AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0168960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168960 MtrunA17_Chr1g0185581 94.504 928 33 4 1 922 1 916 0.0 1699
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168960 AT1G03160.1 54.940 921 386 12 6 922 11 906 0.0 991
Msa0168960 AT1G03160.4 52.660 921 378 13 6 922 11 877 0.0 928
Msa0168960 AT1G03160.2 56.714 700 276 11 18 713 21 697 0.0 763
Msa0168960 AT1G03160.3 56.857 700 273 12 6 701 11 685 0.0 757

Find 227 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGGTTGGGCTTGGGCCTT+AGG 0.170981 1_4:-52001197 None:intergenic
TTCTAGGCTGGGGTTGGGCT+TGG 0.177671 1_4:-52001205 None:intergenic
GACTGAAGCAGTAGAAAATT+TGG 0.183151 1_4:+52006210 Msa0168960:CDS
TACTTGGAGATTACGAAAAT+TGG 0.200895 1_4:+52004657 Msa0168960:CDS
CTCAGGACACATGAAGATTT+TGG 0.203758 1_4:-52006360 None:intergenic
GTTACTAGTTTGAAAAGTTT+TGG 0.218135 1_4:+52001818 Msa0168960:CDS
CTTATGGCTACCTCTAGTTT+TGG 0.219944 1_4:+52003817 Msa0168960:CDS
GATTGACGAGCCGTTCTTAT+TGG 0.233034 1_4:+52002247 Msa0168960:CDS
CTCAAGCTCGTAAAAGCTAT+TGG 0.253669 1_4:-52003884 None:intergenic
TCTAGGCTGGGGTTGGGCTT+GGG 0.258533 1_4:-52001204 None:intergenic
AATCACAATTCCAACGGATT+TGG 0.263231 1_4:-52001351 None:intergenic
TCCTTCTGTGTCATCTGTTC+AGG 0.271301 1_4:+52004391 Msa0168960:CDS
CATACCTCACTTCCAGTTAA+AGG 0.273809 1_4:-52003269 None:intergenic
GCTTCGAGTTTACTTGCTTC+TGG 0.273889 1_4:+52001782 Msa0168960:CDS
ATTAATGATTTCCTGGAATA+GGG 0.274023 1_4:-52006506 None:intergenic
GGAGAGGAGGGAGGGAGATA+TGG 0.274707 1_4:-52000978 None:intergenic
TTCATGTGTCCTGAGTTCTT+TGG 0.283565 1_4:+52006368 Msa0168960:exon
ACTGTGATTAATGCGCTTCT+TGG 0.287328 1_4:+52002875 Msa0168960:CDS
TCATGTGTCCTGAGTTCTTT+GGG 0.289607 1_4:+52006369 Msa0168960:exon
CCTTGTATATTCTCCCTTGT+TGG 0.292272 1_4:-52004697 None:intergenic
GATTTGTTAAACTGGAAGAT+AGG 0.296689 1_4:+52001990 Msa0168960:CDS
GGAAGCAATGTCCTTCATTA+AGG 0.301311 1_4:+52003717 Msa0168960:CDS
AAAATCAGCACCTTCAGATT+TGG 0.302212 1_4:-52001636 None:intergenic
GGGGTGAAGAAGGGAGTAGG+AGG 0.308927 1_4:-52001076 None:intergenic
CTCCACAACACGTGATTTAG+TGG 0.321750 1_4:-52004255 None:intergenic
TTGGAAGATCTTCTTGCTCT+TGG 0.322078 1_4:+52005868 Msa0168960:CDS
TGACTTACTTCTCTAAGAAT+TGG 0.324069 1_4:-52003031 None:intergenic
TTCAGTCAAATCCCTCTTCA+TGG 0.324417 1_4:-52006194 None:intergenic
CCGCCTGGGAAGAGTGTTCT+AGG 0.325337 1_4:-52001221 None:intergenic
TGGAAAATGAGAGCCTTTCT+TGG 0.326351 1_4:+52004109 Msa0168960:CDS
GATTAATGATTTCCTGGAAT+AGG 0.331902 1_4:-52006507 None:intergenic
TTATATGATTAATGATTTCC+TGG 0.345972 1_4:-52006513 None:intergenic
TCAGCTGATCGCCCTTTAAC+TGG 0.347584 1_4:+52003257 Msa0168960:CDS
GGAGAAACAGTTAATAGAAA+TGG 0.348551 1_4:+52002012 Msa0168960:CDS
CTTGTATATTCTCCCTTGTT+GGG 0.350679 1_4:-52004696 None:intergenic
TGCTCTTGAAGCAAAACTTA+TGG 0.354047 1_4:+52003801 Msa0168960:CDS
TTCCTTCGTAAATTATTTGA+TGG 0.357226 1_4:+52001857 Msa0168960:CDS
GCCTATTCTGCGCCTGATCT+TGG 0.360092 1_4:-52006264 None:intergenic
TCAGTCTCTGGTTCTCAATA+TGG 0.360347 1_4:+52003859 Msa0168960:CDS
GATACCTTTGTGAGAGTCAT+TGG 0.361581 1_4:+52006232 Msa0168960:CDS
TGAAGAATTACATTAGTTCC+AGG 0.368480 1_4:-52003173 None:intergenic
CTGGGAAGAGTGTTCTAGGC+TGG 0.369317 1_4:-52001217 None:intergenic
TCGATATGCCAAGCAGGATT+TGG 0.369694 1_4:+52004038 Msa0168960:CDS
GAAATGGCGAGAAACATTAT+TGG 0.371244 1_4:-52001171 None:intergenic
AGGGGATCAAGCTGGCTATC+AGG 0.372164 1_4:+52004799 Msa0168960:CDS
AGGTGTGGATAGCGAGAGAA+GGG 0.383193 1_4:-52001110 None:intergenic
AGAAGGGGTTGTTATGGAAC+AGG 0.385359 1_4:-52001045 None:intergenic
GTTGCTAGGAATACAATGTT+AGG 0.385672 1_4:+52001539 Msa0168960:CDS
TGTGGGTGGATTTGTTAAAC+TGG 0.386432 1_4:+52001982 Msa0168960:CDS
GAGAGTGGGGACTTTGAGTT+CGG 0.387486 1_4:-52001255 None:intergenic
TCAAGCTCGTAAAAGCTATT+GGG 0.388699 1_4:-52003883 None:intergenic
AGAGTGTTCTAGGCTGGGGT+TGG 0.391496 1_4:-52001211 None:intergenic
AGAGTGGGGACTTTGAGTTC+GGG 0.394024 1_4:-52001254 None:intergenic
TGAAGAAGGGAGTAGGAGGG+AGG 0.396511 1_4:-52001072 None:intergenic
GAATGGAGAGTGCGGCGAAA+AGG 0.399526 1_4:-52001134 None:intergenic
AAGAACCACCAATTCGCTAT+TGG 0.400572 1_4:-52001564 None:intergenic
GGAATAAGAAGGGGTTGTTA+TGG 0.401637 1_4:-52001051 None:intergenic
GAGTGTTCTAGGCTGGGGTT+GGG 0.404490 1_4:-52001210 None:intergenic
CTTTATGTTGTCCTTAATGA+AGG 0.405933 1_4:-52003728 None:intergenic
TCGGGGCGTTTGTAACCGCC+TGG 0.409314 1_4:-52001236 None:intergenic
TAGCAAATATATTGACCATC+TGG 0.411722 1_4:-52002998 None:intergenic
ATGTCCTTGAACCCTATTCC+AGG 0.418990 1_4:+52006495 Msa0168960:three_prime_UTR
GTGTAAGGGAGGGGTGAAGA+AGG 0.420309 1_4:-52001086 None:intergenic
GGGGTTGGGCTTGGGCCTTA+GGG 0.425443 1_4:-52001196 None:intergenic
TTCGTAAATTATTTGATGGT+GGG 0.427307 1_4:+52001861 Msa0168960:CDS
ATTCGCCACGTGTAAGAATC+TGG 0.429208 1_4:-52001298 None:intergenic
CGAATTGGTGGTTCTTCCAT+TGG 0.431065 1_4:+52001571 Msa0168960:CDS
ATAGTAAACATTATTTCAAA+AGG 0.431471 1_4:+52006633 Msa0168960:three_prime_UTR
GAAAGAAGGGAGAGGAGGGA+GGG 0.431825 1_4:-52000986 None:intergenic
AGTAGGAGGGAGGAATAAGA+AGG 0.433949 1_4:-52001062 None:intergenic
GCTCTTGGAATTTGTTCTGT+TGG 0.439392 1_4:+52005883 Msa0168960:CDS
AGAAAGAAGGGAGAGGAGGG+AGG 0.444007 1_4:-52000987 None:intergenic
CATATGAGTTGCTAAAGAAA+GGG 0.444121 1_4:+52004780 Msa0168960:CDS
GAGGTGTGGATAGCGAGAGA+AGG 0.445791 1_4:-52001111 None:intergenic
TGGGAAGAGTGTTCTAGGCT+GGG 0.448377 1_4:-52001216 None:intergenic
GATAGAAAGAAGGGAGAGGA+GGG 0.451930 1_4:-52000990 None:intergenic
ACCAAGATCAGGCGCAGAAT+AGG 0.452346 1_4:+52006263 Msa0168960:CDS
CTTCGTAAATTATTTGATGG+TGG 0.456739 1_4:+52001860 Msa0168960:CDS
GCAGAGTATAACAGAGGTTG+TGG 0.456855 1_4:+52001964 Msa0168960:CDS
TTCTGAATTCTTGAGGTGGC+AGG 0.456958 1_4:-52004356 None:intergenic
GAGTTTGTTTCCTCCAAGAA+AGG 0.457846 1_4:-52004122 None:intergenic
AACGAAGAATTGTCAGTCTC+TGG 0.458078 1_4:+52003847 Msa0168960:CDS
GGGGAATGAAGATAGAAAGA+AGG 0.458157 1_4:-52001000 None:intergenic
ATACCTCACTTCCAGTTAAA+GGG 0.459106 1_4:-52003268 None:intergenic
GTTAGGTTCCAATAGCGAAT+TGG 0.463663 1_4:+52001556 Msa0168960:CDS
TTCTCGCCATTTCTTCCCTA+AGG 0.464182 1_4:+52001181 Msa0168960:CDS
TATAAAGAAAGCTGCACCTC+TGG 0.469112 1_4:+52002066 Msa0168960:CDS
ACATATGAGTTGCTAAAGAA+AGG 0.469855 1_4:+52004779 Msa0168960:CDS
CTTATATATGGTGGTGGTGG+TGG 0.469889 1_4:+52001659 Msa0168960:CDS
GGAGGGGTGAAGAAGGGAGT+AGG 0.471511 1_4:-52001079 None:intergenic
AATGTGATCTCATTCGTTGT+TGG 0.473194 1_4:-52002926 None:intergenic
ATTGGTGGTTCTTCCATTGG+TGG 0.475310 1_4:+52001574 Msa0168960:CDS
CTTGGTCAACTAGGAGTGGC+TGG 0.475698 1_4:+52005805 Msa0168960:CDS
AATGGAGAGTGCGGCGAAAA+GGG 0.479516 1_4:-52001133 None:intergenic
TGTAAGGGAGGGGTGAAGAA+GGG 0.481471 1_4:-52001085 None:intergenic
TTGGAATTTGTTCTGTTGGC+GGG 0.483032 1_4:+52005887 Msa0168960:CDS
AGAAACATTATTGGAAGTGA+TGG 0.485938 1_4:-52001162 None:intergenic
CGAATTTCCCATCTCGGAGG+CGG 0.487689 1_4:+52006113 Msa0168960:CDS
GGGAATGAAGATAGAAAGAA+GGG 0.487751 1_4:-52000999 None:intergenic
ATTTCCTGGAATAGGGTTCA+AGG 0.489984 1_4:-52006499 None:intergenic
GAGAAAGATATCTCAAAGAC+GGG 0.490849 1_4:+52002897 Msa0168960:CDS
GGGTGAAGAAGGGAGTAGGA+GGG 0.495213 1_4:-52001075 None:intergenic
TGGCAAACCTTACCAAGATC+AGG 0.496944 1_4:+52006252 Msa0168960:CDS
TTGAGTTGGAGAATGAGAGT+GGG 0.497301 1_4:-52001269 None:intergenic
ATCACACGCCGCCTCCGAGA+TGG 0.500627 1_4:-52006121 None:intergenic
CTTGGGCCTTAGGGAAGAAA+TGG 0.502374 1_4:-52001187 None:intergenic
TTAGGGACTCTTGGTCAACT+AGG 0.502895 1_4:+52005796 Msa0168960:CDS
TTCTGCGCCTGATCTTGGTA+AGG 0.503435 1_4:-52006259 None:intergenic
CATAAAGAGATTGTTGAAAA+CGG 0.503693 1_4:+52003744 Msa0168960:CDS
TTTCTTATATATGGTGGTGG+TGG 0.504919 1_4:+52001656 Msa0168960:CDS
CTTAAACTTGAAACACCTGT+TGG 0.505262 1_4:+52003964 Msa0168960:CDS
GATTGGATACAGAAAATACT+TGG 0.505510 1_4:+52004641 Msa0168960:intron
CTTGGAATTTGTTCTGTTGG+CGG 0.506769 1_4:+52005886 Msa0168960:CDS
AGTCTGTCTGCAATTCCAAC+AGG 0.507009 1_4:-52003979 None:intergenic
CTATTTCGAATTTCCCATCT+CGG 0.507858 1_4:+52006107 Msa0168960:CDS
GGGAAGAGTGTTCTAGGCTG+GGG 0.508896 1_4:-52001215 None:intergenic
TTACTTGCTTCTGGTGCTAG+TGG 0.511768 1_4:+52001791 Msa0168960:CDS
TTCTTCGTTATTCACAGCAA+TGG 0.512194 1_4:+52003399 Msa0168960:CDS
CTAGATGGGTCAACGATCGC+AGG 0.516747 1_4:+52003925 Msa0168960:CDS
ATTTGTTAAACTGGAAGATA+GGG 0.520690 1_4:+52001991 Msa0168960:CDS
GAATCTGGTCGGAGTTGAGT+TGG 0.524814 1_4:-52001283 None:intergenic
AGATAGAAAGAAGGGAGAGG+AGG 0.526108 1_4:-52000991 None:intergenic
TACCATGGATTTGATTTGAA+GGG 0.526464 1_4:-52001021 None:intergenic
CAGCCTAGAACACTCTTCCC+AGG 0.529886 1_4:+52001218 Msa0168960:CDS
GTACCATGGATTTGATTTGA+AGG 0.530377 1_4:-52001022 None:intergenic
GTGTGGATAGCGAGAGAAGG+GGG 0.530632 1_4:-52001108 None:intergenic
AAAATGAGAGCCTTTCTTGG+AGG 0.531067 1_4:+52004112 Msa0168960:CDS
GTAGGAGGGAGGAATAAGAA+GGG 0.531691 1_4:-52001061 None:intergenic
AGGTTCCAATAGCGAATTGG+TGG 0.531924 1_4:+52001559 Msa0168960:CDS
TCACACGCCGCCTCCGAGAT+GGG 0.532753 1_4:-52006120 None:intergenic
TATTGCAGCCAAATCCTGCT+TGG 0.535558 1_4:-52004046 None:intergenic
GTTGAGTTGGAGAATGAGAG+TGG 0.535932 1_4:-52001270 None:intergenic
CAGAGTATAACAGAGGTTGT+GGG 0.536041 1_4:+52001965 Msa0168960:CDS
TTCTTCAAGTTCATTCGCCA+AGG 0.537920 1_4:-52006170 None:intergenic
TGGAAGTGATGGGAGAGGAA+TGG 0.537999 1_4:-52001151 None:intergenic
AGGAGGGAGGGAGATATGGA+TGG 0.538742 1_4:-52000974 None:intergenic
AAATTAGTCAATGAGAGTAA+TGG 0.541323 1_4:+52001938 Msa0168960:CDS
AAAGCAGTTTCCAAATCCGT+TGG 0.544631 1_4:+52001341 Msa0168960:CDS
AACAGTAGGAAGACCTTGAT+CGG 0.550869 1_4:-52001516 None:intergenic
CCAACAAGGGAGAATATACA+AGG 0.551313 1_4:+52004697 Msa0168960:CDS
TCATTCTGTTATTGATGCGA+TGG 0.553003 1_4:+52006397 Msa0168960:three_prime_UTR
TGGGTCAACGATCGCAGGGA+TGG 0.557970 1_4:+52003930 Msa0168960:CDS
GTCTTCCTACTGTTGTTGCT+AGG 0.559275 1_4:+52001525 Msa0168960:CDS
TGAAATATCCCAAAGAACTC+AGG 0.564402 1_4:-52006377 None:intergenic
CTAAAGAAAGGGGATCAAGC+TGG 0.564620 1_4:+52004791 Msa0168960:CDS
ATCCACTAAATCACGTGTTG+TGG 0.567456 1_4:+52004253 Msa0168960:CDS
GAAACATTATTGGAAGTGAT+GGG 0.567733 1_4:-52001161 None:intergenic
AGGCCATGGCAAATTAAAAG+TGG 0.567870 1_4:-52006427 None:intergenic
TGAGTTGGAGAATGAGAGTG+GGG 0.570172 1_4:-52001268 None:intergenic
CGGGGCGTTTGTAACCGCCT+GGG 0.570320 1_4:-52001235 None:intergenic
GAGGCGGCGTGTGATAGATA+AGG 0.570406 1_4:+52006129 Msa0168960:CDS
TATGTCATTCTGAATTCTTG+AGG 0.570562 1_4:-52004363 None:intergenic
TACTTCTCTAAGAATTGGAG+CGG 0.570606 1_4:-52003026 None:intergenic
GCCGTTCTTATTGGTCATAG+TGG 0.574438 1_4:+52002256 Msa0168960:CDS
TCTTGCTTAAAGAGAGGCCA+TGG 0.574910 1_4:-52006441 None:intergenic
GGGAGGGAGATATGGATGGA+TGG 0.575219 1_4:-52000970 None:intergenic
GTGTGATAGATAAGGTGAAA+AGG 0.575343 1_4:+52006137 Msa0168960:CDS
ACTTCTCTAAGAATTGGAGC+GGG 0.575454 1_4:-52003025 None:intergenic
TGAGCAAGAAGTTCGTGAGA+TGG 0.577980 1_4:+52004862 Msa0168960:CDS
ATCTGTACTGCAAACCACAT+TGG 0.578353 1_4:+52005849 Msa0168960:CDS
GAGTGGGGACTTTGAGTTCG+GGG 0.580394 1_4:-52001253 None:intergenic
TGAAGATAGAAAGAAGGGAG+AGG 0.581729 1_4:-52000994 None:intergenic
GAGGAAACAAACTCTATCCA+TGG 0.582861 1_4:+52004131 Msa0168960:CDS
GGTGTGGATAGCGAGAGAAG+GGG 0.584107 1_4:-52001109 None:intergenic
ATGACAATTGTTGATACACC+TGG 0.584916 1_4:+52003155 Msa0168960:CDS
GAAAAGGAAAGCAGATACCT+TGG 0.585138 1_4:+52006153 Msa0168960:CDS
CTCTAAGAATTGGAGCGGGA+AGG 0.585703 1_4:-52003021 None:intergenic
GGAGAAAGATATCTCAAAGA+CGG 0.586536 1_4:+52002896 Msa0168960:CDS
GTTAATAGAAATGGAGAGGT+CGG 0.587179 1_4:+52002021 Msa0168960:CDS
TGTTATGGAACAGGGTACCA+TGG 0.587563 1_4:-52001036 None:intergenic
TGGCCTCTCTTTAAGCAAGA+AGG 0.588310 1_4:+52006444 Msa0168960:three_prime_UTR
AACTTGAAGAAGCCATGAAG+AGG 0.589676 1_4:+52006182 Msa0168960:CDS
ATCGGAGAGTAAAACGCCAC+TGG 0.590084 1_4:-52001498 None:intergenic
ACCATGGATTTGATTTGAAG+GGG 0.592880 1_4:-52001020 None:intergenic
GACTCTTGGTCAACTAGGAG+TGG 0.595185 1_4:+52005801 Msa0168960:CDS
AGACTATCGATATGCCAAGC+AGG 0.596164 1_4:+52004032 Msa0168960:CDS
GTTGAGTTTCCCAAAACTAG+AGG 0.598083 1_4:-52003827 None:intergenic
CATGGCAAATTAAAAGTGGA+TGG 0.598743 1_4:-52006423 None:intergenic
GATGGATGACTCTCCGTCAG+TGG 0.599652 1_4:-52000952 None:intergenic
ACTTGAAGAAGCCATGAAGA+GGG 0.600088 1_4:+52006183 Msa0168960:CDS
AACAGTTAATAGAAATGGAG+AGG 0.600267 1_4:+52002017 Msa0168960:CDS
ATTATTGGAAGTGATGGGAG+AGG 0.603910 1_4:-52001156 None:intergenic
AACAACTCAGATTCCACTGA+CGG 0.605575 1_4:+52000939 None:intergenic
TAGGAGGGAGGAATAAGAAG+GGG 0.608955 1_4:-52001060 None:intergenic
TCGCAGGGATGGATAGAATG+AGG 0.611057 1_4:+52003941 Msa0168960:CDS
GCGCCTTCTTGCTTAAAGAG+AGG 0.614736 1_4:-52006447 None:intergenic
GTGCGGCGAAAAGGGAGGTG+TGG 0.619577 1_4:-52001125 None:intergenic
CCATGGATTTGATTTGAAGG+GGG 0.619733 1_4:-52001019 None:intergenic
GTCATTCTGAATTCTTGAGG+TGG 0.619878 1_4:-52004360 None:intergenic
ATATGAGTTGCTAAAGAAAG+GGG 0.621951 1_4:+52004781 Msa0168960:CDS
AGAGCAGATCGAGCAGACAC+AGG 0.622073 1_4:-52003784 None:intergenic
ACCACTATGACCAATAAGAA+CGG 0.622805 1_4:-52002257 None:intergenic
TGTACAAATCTAGCCACCAA+TGG 0.622816 1_4:-52001587 None:intergenic
AGTTAGAATCACAATTCCAA+CGG 0.632514 1_4:-52001357 None:intergenic
GCTGCCGCTGCTGTTACCAG+TGG 0.632649 1_4:+52001482 Msa0168960:CDS
CACCATCAAATAATTTACGA+AGG 0.635780 1_4:-52001859 None:intergenic
ACAGCAATGGAAGAAGAAAG+TGG 0.636739 1_4:+52003412 Msa0168960:CDS
GGAGAGTGCGGCGAAAAGGG+AGG 0.644910 1_4:-52001130 None:intergenic
ACCTGAACAGATGACACAGA+AGG 0.647984 1_4:-52004392 None:intergenic
GTAAATGCATCCAAATCTGA+AGG 0.648586 1_4:+52001626 Msa0168960:CDS
GAGAAACTTGTCATGCGATG+AGG 0.653040 1_4:+52001760 Msa0168960:CDS
GTATTCCTAGCAACAACAGT+AGG 0.653665 1_4:-52001530 None:intergenic
GCCACGTGTAAGAATCTGGT+CGG 0.655214 1_4:-52001294 None:intergenic
TAGATGGGTCAACGATCGCA+GGG 0.658514 1_4:+52003926 Msa0168960:CDS
GAGACAACAGCGTCTTACAG+AGG 0.659308 1_4:+52003196 Msa0168960:CDS
TTTATCGATCAAGTCTAGTG+CGG 0.664777 1_4:-52001321 None:intergenic
AAAAGAAGTAAGTCTGCTCG+AGG 0.665143 1_4:-52003227 None:intergenic
AGTATAACAGAGGTTGTGGG+TGG 0.666437 1_4:+52001968 Msa0168960:CDS
GTGTAACTTGATATATGCAA+TGG 0.666867 1_4:+52006551 Msa0168960:three_prime_UTR
CACTGTGAAAGGTATCCAGA+TGG 0.669931 1_4:+52002983 Msa0168960:CDS
CAAGTTTCTCCCCACAAACG+AGG 0.670479 1_4:-52001747 None:intergenic
TTTCGAATTTCCCATCTCGG+AGG 0.670630 1_4:+52006110 Msa0168960:CDS
AACGCCACTGGTAACAGCAG+CGG 0.672510 1_4:-52001486 None:intergenic
CTAACTAGTAATGAACAAAG+TGG 0.676424 1_4:+52001374 Msa0168960:CDS
TGCAAATGATGAGAGAACAC+TGG 0.676506 1_4:+52001886 Msa0168960:CDS
TGGGAGAGGAATGGAGAGTG+CGG 0.678631 1_4:-52001142 None:intergenic
TGGTTTGCAGAGTATAACAG+AGG 0.684199 1_4:+52001958 Msa0168960:CDS
TCGCCCTTTAACTGGAAGTG+AGG 0.689500 1_4:+52003265 Msa0168960:CDS
GAAGGGGTTGTTATGGAACA+GGG 0.689780 1_4:-52001044 None:intergenic
ACTAGTAATGAACAAAGTGG+TGG 0.690621 1_4:+52001377 Msa0168960:CDS
AGCAAGAAGATCTTCCAATG+TGG 0.693565 1_4:-52005863 None:intergenic
CATTTATCAGAATAATCATG+AGG 0.697867 1_4:+52003457 Msa0168960:CDS
TCCGACCAGATTCTTACACG+TGG 0.712840 1_4:+52001293 Msa0168960:CDS
TTTGCCAATGACTCTCACAA+AGG 0.714611 1_4:-52006236 None:intergenic
CCTAGAACACTCTTCCCAGG+CGG 0.742141 1_4:+52001221 Msa0168960:CDS
AGAAAGATATCTCAAAGACG+GGG 0.744416 1_4:+52002898 Msa0168960:CDS
GAGAGAACACTGGATGATCG+TGG 0.745507 1_4:+52001896 Msa0168960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTTACATTATTTTACA+AGG - chr1_4:52004901-52004920 None:intergenic 15.0%
!!! TTTTTATGCTATTTTACTTA+CGG - chr1_4:52005261-52005280 None:intergenic 15.0%
!! ATAGTAATGAAATAATATCT+AGG + chr1_4:52006012-52006031 Msa0168960:intron 15.0%
!! ATAGTAAACATTATTTCAAA+AGG + chr1_4:52006633-52006652 Msa0168960:three_prime_UTR 15.0%
!!! TTACTAGTTTGAAAAGTTTT+GGG + chr1_4:52001819-52001838 Msa0168960:CDS 20.0%
!! GTTAAAACTAGTTAACAAAT+AGG + chr1_4:52002374-52002393 Msa0168960:intron 20.0%
!!! TTAGTCCTTTTTTTTTAGTA+TGG + chr1_4:52003293-52003312 Msa0168960:intron 20.0%
!!! TAGTCCTTTTTTTTTAGTAT+GGG + chr1_4:52003294-52003313 Msa0168960:intron 20.0%
!!! CATGTTTTATTTTCTTTTTC+AGG + chr1_4:52003370-52003389 Msa0168960:intron 20.0%
!! TTATGTTTCATGATTCATAT+TGG + chr1_4:52003485-52003504 Msa0168960:intron 20.0%
!! TATGTTTCATGATTCATATT+GGG + chr1_4:52003486-52003505 Msa0168960:intron 20.0%
!! AATATTTGTTTAGTGTACAA+TGG - chr1_4:52003595-52003614 None:intergenic 20.0%
!! ATTGTACACTAAACAAATAT+TGG + chr1_4:52003594-52003613 Msa0168960:intron 20.0%
!! TTGTACACTAAACAAATATT+GGG + chr1_4:52003595-52003614 Msa0168960:intron 20.0%
!!! TTTTTATATAGCTTTCTAGA+TGG + chr1_4:52003910-52003929 Msa0168960:CDS 20.0%
!!! TTTTATATAGCTTTCTAGAT+GGG + chr1_4:52003911-52003930 Msa0168960:CDS 20.0%
!!! AAATGATTTTGCATTGAATA+TGG + chr1_4:52004089-52004108 Msa0168960:CDS 20.0%
!! TTAAGAACATACTAATTAAG+AGG - chr1_4:52004205-52004224 None:intergenic 20.0%
!! ACATTTAAGCAAAACATAAA+TGG - chr1_4:52004613-52004632 None:intergenic 20.0%
!!! ATGTTTTGCTTAAATGTTTT+TGG + chr1_4:52004616-52004635 Msa0168960:intron 20.0%
!!! TTTTATGCTATTTTACTTAC+GGG - chr1_4:52005260-52005279 None:intergenic 20.0%
!! GACAATATTCATTCATATAT+GGG - chr1_4:52005653-52005672 None:intergenic 20.0%
!! AGACAATATTCATTCATATA+TGG - chr1_4:52005654-52005673 None:intergenic 20.0%
!! ATTTCATTACTATCTCTTAA+AGG - chr1_4:52006005-52006024 None:intergenic 20.0%
!! TTATATGATTAATGATTTCC+TGG - chr1_4:52006516-52006535 None:intergenic 20.0%
!!! CAAAAGGTTAATTAAGTTTT+TGG + chr1_4:52006649-52006668 Msa0168960:three_prime_UTR 20.0%
!! GAACTTTTAAATCAGGAAAT+TGG + chr1_4:52001689-52001708 Msa0168960:CDS 25.0%
!!! GTTACTAGTTTGAAAAGTTT+TGG + chr1_4:52001818-52001837 Msa0168960:CDS 25.0%
! TTCCTTCGTAAATTATTTGA+TGG + chr1_4:52001857-52001876 Msa0168960:CDS 25.0%
!! TTCGTAAATTATTTGATGGT+GGG + chr1_4:52001861-52001880 Msa0168960:CDS 25.0%
! AAATTAGTCAATGAGAGTAA+TGG + chr1_4:52001938-52001957 Msa0168960:CDS 25.0%
!! ATTTGTTAAACTGGAAGATA+GGG + chr1_4:52001991-52002010 Msa0168960:CDS 25.0%
!!! GATCTTTTAACTAAAACAGT+TGG + chr1_4:52002090-52002109 Msa0168960:intron 25.0%
! ACACAAAGTAAACAATATAC+TGG - chr1_4:52002162-52002181 None:intergenic 25.0%
! TTGTTTACTTTGTGTTGAAT+TGG + chr1_4:52002167-52002186 Msa0168960:intron 25.0%
! TTCCTATATCGTTATACTTA+TGG + chr1_4:52002611-52002630 Msa0168960:intron 25.0%
! TTCCATAAGTATAACGATAT+AGG - chr1_4:52002616-52002635 None:intergenic 25.0%
! AAAGATAATAAATAGTGACG+TGG - chr1_4:52002728-52002747 None:intergenic 25.0%
!!! AGTGTTGTTTTTCAATATCT+AGG - chr1_4:52002967-52002986 None:intergenic 25.0%
!!! TTAGTTTTCTCCTTATGTTT+TGG + chr1_4:52003062-52003081 Msa0168960:intron 25.0%
! CAAACAGAAATTGTAATCAA+GGG - chr1_4:52003092-52003111 None:intergenic 25.0%
!!! AGTCCTTTTTTTTTAGTATG+GGG + chr1_4:52003295-52003314 Msa0168960:intron 25.0%
! CATTTATCAGAATAATCATG+AGG + chr1_4:52003457-52003476 Msa0168960:CDS 25.0%
! AAGTAAAGACAACAACATTA+GGG - chr1_4:52003626-52003645 None:intergenic 25.0%
!!! TTGTTCTTTTGTACTGATAT+AGG + chr1_4:52003644-52003663 Msa0168960:intron 25.0%
! ATGTATAACGTAAAACTACT+TGG - chr1_4:52003676-52003695 None:intergenic 25.0%
! CATAAAGAGATTGTTGAAAA+CGG + chr1_4:52003744-52003763 Msa0168960:CDS 25.0%
!! GTTCATAATTTTTGAATGTC+AGG + chr1_4:52004167-52004186 Msa0168960:intron 25.0%
! AGTATGTTCTTAAATTGCAA+TGG + chr1_4:52004212-52004231 Msa0168960:intron 25.0%
!! GTTGTATCATATGTTTTCAA+AGG + chr1_4:52004317-52004336 Msa0168960:CDS 25.0%
! TGATTTATTTGACCATAAAC+TGG + chr1_4:52004494-52004513 Msa0168960:intron 25.0%
! TTTAATCTCGCATTAGTATT+TGG - chr1_4:52004562-52004581 None:intergenic 25.0%
!!! CTTAAATGTTTTTGGTTGAT+TGG + chr1_4:52004624-52004643 Msa0168960:intron 25.0%
!! ACTATTTTCATGAATCAATG+AGG - chr1_4:52004744-52004763 None:intergenic 25.0%
!! TTCTCATGATTTGAAATCAA+AGG + chr1_4:52005004-52005023 Msa0168960:intron 25.0%
!!! GTTTTATACAAGTTTGGTTT+TGG - chr1_4:52005170-52005189 None:intergenic 25.0%
! TATATGTGTAACAAACTTTC+CGG + chr1_4:52005197-52005216 Msa0168960:intron 25.0%
!! AAACTTCCATTTAAAATGTC+CGG - chr1_4:52005219-52005238 None:intergenic 25.0%
!! TTAGCATTTAGAATGATTTC+TGG + chr1_4:52005335-52005354 Msa0168960:intron 25.0%
!! ATTGATCATTCATCATTTTG+AGG - chr1_4:52005393-52005412 None:intergenic 25.0%
! ATGATGAATGATCAATCAAT+AGG + chr1_4:52005397-52005416 Msa0168960:intron 25.0%
! AAATATTATATTTACCGCTG+AGG - chr1_4:52005684-52005703 None:intergenic 25.0%
! ATTAATGATTTCCTGGAATA+GGG - chr1_4:52006509-52006528 None:intergenic 25.0%
!! TACCATGGATTTGATTTGAA+GGG - chr1_4:52001024-52001043 None:intergenic 30.0%
GAAACATTATTGGAAGTGAT+GGG - chr1_4:52001164-52001183 None:intergenic 30.0%
AGAAACATTATTGGAAGTGA+TGG - chr1_4:52001165-52001184 None:intergenic 30.0%
AGTTAGAATCACAATTCCAA+CGG - chr1_4:52001360-52001379 None:intergenic 30.0%
CTAACTAGTAATGAACAAAG+TGG + chr1_4:52001374-52001393 Msa0168960:CDS 30.0%
!!! GGTGCTGATTTTCTTATATA+TGG + chr1_4:52001647-52001666 Msa0168960:CDS 30.0%
!! GCTGATTTTCTTATATATGG+TGG + chr1_4:52001650-52001669 Msa0168960:CDS 30.0%
! GATTTTCTTATATATGGTGG+TGG + chr1_4:52001653-52001672 Msa0168960:CDS 30.0%
! CGATATGGAACTTTTAAATC+AGG + chr1_4:52001682-52001701 Msa0168960:CDS 30.0%
CACCATCAAATAATTTACGA+AGG - chr1_4:52001862-52001881 None:intergenic 30.0%
CTTCGTAAATTATTTGATGG+TGG + chr1_4:52001860-52001879 Msa0168960:CDS 30.0%
!! GATTTGTTAAACTGGAAGAT+AGG + chr1_4:52001990-52002009 Msa0168960:CDS 30.0%
GGAGAAACAGTTAATAGAAA+TGG + chr1_4:52002012-52002031 Msa0168960:CDS 30.0%
AACAGTTAATAGAAATGGAG+AGG + chr1_4:52002017-52002036 Msa0168960:CDS 30.0%
TTTAGTTAAAAGATCACCAG+AGG - chr1_4:52002085-52002104 None:intergenic 30.0%
ACTTTGTGTTGAATTGGAAT+TGG + chr1_4:52002173-52002192 Msa0168960:intron 30.0%
! AATTGGTTTCAAATGACAGA+TGG + chr1_4:52002190-52002209 Msa0168960:intron 30.0%
!! TTTACTAGAGTGTTGATTCA+TGG + chr1_4:52002476-52002495 Msa0168960:intron 30.0%
TCTGAAGAATGCAATATGTT+GGG + chr1_4:52002569-52002588 Msa0168960:intron 30.0%
ATTTATTTGACTCTATTGCC+AGG + chr1_4:52002829-52002848 Msa0168960:intron 30.0%
TTTATTTGACTCTATTGCCA+GGG + chr1_4:52002830-52002849 Msa0168960:intron 30.0%
TTGAAAAACAACACTGTGAA+AGG + chr1_4:52002972-52002991 Msa0168960:CDS 30.0%
TAGCAAATATATTGACCATC+TGG - chr1_4:52003001-52003020 None:intergenic 30.0%
! TGACTTACTTCTCTAAGAAT+TGG - chr1_4:52003034-52003053 None:intergenic 30.0%
GCAAACAGAAATTGTAATCA+AGG - chr1_4:52003093-52003112 None:intergenic 30.0%
CAATTTCTGTTTGCAATTAG+TGG + chr1_4:52003099-52003118 Msa0168960:intron 30.0%
! AATTGTCATCTGTTTTCAGA+AGG - chr1_4:52003144-52003163 None:intergenic 30.0%
TGAAGAATTACATTAGTTCC+AGG - chr1_4:52003176-52003195 None:intergenic 30.0%
ATGCCCCATACTAAAAAAAA+AGG - chr1_4:52003301-52003320 None:intergenic 30.0%
ATTTGTTTAGTGTACAATGG+AGG - chr1_4:52003592-52003611 None:intergenic 30.0%
CAAGTAAAGACAACAACATT+AGG - chr1_4:52003627-52003646 None:intergenic 30.0%
CTTTATGTTGTCCTTAATGA+AGG - chr1_4:52003731-52003750 None:intergenic 30.0%
TATGTCATTCTGAATTCTTG+AGG - chr1_4:52004366-52004385 None:intergenic 30.0%
GATTGGATACAGAAAATACT+TGG + chr1_4:52004641-52004660 Msa0168960:intron 30.0%
TACTTGGAGATTACGAAAAT+TGG + chr1_4:52004657-52004676 Msa0168960:CDS 30.0%
ACATATGAGTTGCTAAAGAA+AGG + chr1_4:52004779-52004798 Msa0168960:CDS 30.0%
CATATGAGTTGCTAAAGAAA+GGG + chr1_4:52004780-52004799 Msa0168960:CDS 30.0%
ATATGAGTTGCTAAAGAAAG+GGG + chr1_4:52004781-52004800 Msa0168960:CDS 30.0%
TGTAAAAACTCTTCTCTTCT+AGG + chr1_4:52004911-52004930 Msa0168960:intron 30.0%
TCAGTTGAACAACTAACTAA+TGG + chr1_4:52005079-52005098 Msa0168960:intron 30.0%
TGAACAACTAACTAATGGAA+TGG + chr1_4:52005084-52005103 Msa0168960:intron 30.0%
AACCAAACTTGTATAAAACC+AGG + chr1_4:52005171-52005190 Msa0168960:intron 30.0%
ACCAAACTTGTATAAAACCA+GGG + chr1_4:52005172-52005191 Msa0168960:intron 30.0%
! AACTTTCCGGACATTTTAAA+TGG + chr1_4:52005210-52005229 Msa0168960:intron 30.0%
! ATGTCTAAGATATTGCCTTA+AGG + chr1_4:52005312-52005331 Msa0168960:intron 30.0%
CATTCTAAATGCTAACCTTA+AGG - chr1_4:52005330-52005349 None:intergenic 30.0%
ATAACCAGTGTGATTTATTC+AGG + chr1_4:52005434-52005453 Msa0168960:intron 30.0%
! TTCCCTATATTAACGTTTTC+TGG + chr1_4:52005519-52005538 Msa0168960:intron 30.0%
TGCCAGAAAACGTTAATATA+GGG - chr1_4:52005524-52005543 None:intergenic 30.0%
TTGTTATATAGTAGCTTCCA+GGG - chr1_4:52005548-52005567 None:intergenic 30.0%
ACTTAATTGTTGATCAGACA+AGG - chr1_4:52005582-52005601 None:intergenic 30.0%
AGAATTGTTTAGTGACATAG+TGG - chr1_4:52005746-52005765 None:intergenic 30.0%
! TTCCTTCTGTGTAGATTTTA+GGG + chr1_4:52005779-52005798 Msa0168960:intron 30.0%
TTCACTTCTTGCTAATATCT+GGG + chr1_4:52006056-52006075 Msa0168960:intron 30.0%
GATTAATGATTTCCTGGAAT+AGG - chr1_4:52006510-52006529 None:intergenic 30.0%
GTGTAACTTGATATATGCAA+TGG + chr1_4:52006551-52006570 Msa0168960:three_prime_UTR 30.0%
GGGAATGAAGATAGAAAGAA+GGG - chr1_4:52001002-52001021 None:intergenic 35.0%
!! ACCATGGATTTGATTTGAAG+GGG - chr1_4:52001023-52001042 None:intergenic 35.0%
!! GTACCATGGATTTGATTTGA+AGG - chr1_4:52001025-52001044 None:intergenic 35.0%
GAAATGGCGAGAAACATTAT+TGG - chr1_4:52001174-52001193 None:intergenic 35.0%
TTTATCGATCAAGTCTAGTG+CGG - chr1_4:52001324-52001343 None:intergenic 35.0%
! AATCACAATTCCAACGGATT+TGG - chr1_4:52001354-52001373 None:intergenic 35.0%
ACTAGTAATGAACAAAGTGG+TGG + chr1_4:52001377-52001396 Msa0168960:CDS 35.0%
GTTGCTAGGAATACAATGTT+AGG + chr1_4:52001539-52001558 Msa0168960:CDS 35.0%
GTAAATGCATCCAAATCTGA+AGG + chr1_4:52001626-52001645 Msa0168960:CDS 35.0%
AAAATCAGCACCTTCAGATT+TGG - chr1_4:52001639-52001658 None:intergenic 35.0%
!! TTTCTTATATATGGTGGTGG+TGG + chr1_4:52001656-52001675 Msa0168960:CDS 35.0%
GTTAATAGAAATGGAGAGGT+CGG + chr1_4:52002021-52002040 Msa0168960:CDS 35.0%
ACCACTATGACCAATAAGAA+CGG - chr1_4:52002260-52002279 None:intergenic 35.0%
TGCTGAATCTCAACAAATTC+TGG + chr1_4:52002287-52002306 Msa0168960:intron 35.0%
CTAATACCAATGTATATCCC+AGG - chr1_4:52002315-52002334 None:intergenic 35.0%
CAAATAGGTGCTCTTTATTG+TGG + chr1_4:52002389-52002408 Msa0168960:intron 35.0%
! CTCTGAAGAATGCAATATGT+TGG + chr1_4:52002568-52002587 Msa0168960:intron 35.0%
!! ATGCAATATGTTGGGTTAGT+TGG + chr1_4:52002577-52002596 Msa0168960:intron 35.0%
!! TGCAATATGTTGGGTTAGTT+GGG + chr1_4:52002578-52002597 Msa0168960:intron 35.0%
! ATGAGTATTGTCAGCTATTG+CGG - chr1_4:52002650-52002669 None:intergenic 35.0%
TAGCTGACAATACTCATCAT+AGG + chr1_4:52002653-52002672 Msa0168960:intron 35.0%
AACTTTCCAACTTTCACCTT+AGG + chr1_4:52002676-52002695 Msa0168960:intron 35.0%
TCAGATAACTACTCAACCTA+AGG - chr1_4:52002695-52002714 None:intergenic 35.0%
TTTCTGTCTCACAAAGCAAT+TGG + chr1_4:52002746-52002765 Msa0168960:intron 35.0%
TTCTGTCTCACAAAGCAATT+GGG + chr1_4:52002747-52002766 Msa0168960:intron 35.0%
TTATTTGACTCTATTGCCAG+GGG + chr1_4:52002831-52002850 Msa0168960:intron 35.0%
GGAGAAAGATATCTCAAAGA+CGG + chr1_4:52002896-52002915 Msa0168960:CDS 35.0%
GAGAAAGATATCTCAAAGAC+GGG + chr1_4:52002897-52002916 Msa0168960:CDS 35.0%
AGAAAGATATCTCAAAGACG+GGG + chr1_4:52002898-52002917 Msa0168960:CDS 35.0%
AATGTGATCTCATTCGTTGT+TGG - chr1_4:52002929-52002948 None:intergenic 35.0%
! TACTTCTCTAAGAATTGGAG+CGG - chr1_4:52003029-52003048 None:intergenic 35.0%
ATGACAATTGTTGATACACC+TGG + chr1_4:52003155-52003174 Msa0168960:CDS 35.0%
ATACCTCACTTCCAGTTAAA+GGG - chr1_4:52003271-52003290 None:intergenic 35.0%
ATAAAACATGTCATACCCCT+GGG - chr1_4:52003360-52003379 None:intergenic 35.0%
AATAAAACATGTCATACCCC+TGG - chr1_4:52003361-52003380 None:intergenic 35.0%
TTCTTCGTTATTCACAGCAA+TGG + chr1_4:52003399-52003418 Msa0168960:CDS 35.0%
TAGATCAATCCTAGAAGCTT+CGG - chr1_4:52003517-52003536 None:intergenic 35.0%
TGCTCTTGAAGCAAAACTTA+TGG + chr1_4:52003801-52003820 Msa0168960:CDS 35.0%
!!! TTATGGCTACCTCTAGTTTT+GGG + chr1_4:52003818-52003837 Msa0168960:CDS 35.0%
TCAAGCTCGTAAAAGCTATT+GGG - chr1_4:52003886-52003905 None:intergenic 35.0%
CTTAAACTTGAAACACCTGT+TGG + chr1_4:52003964-52003983 Msa0168960:CDS 35.0%
GAACTTCTTGTAACATACCA+TGG - chr1_4:52004151-52004170 None:intergenic 35.0%
!!! CATCTGTTCAGGTTAGTTTT+TGG + chr1_4:52004402-52004421 Msa0168960:intron 35.0%
ACTAAATGTGCAGTACAATC+TGG - chr1_4:52004444-52004463 None:intergenic 35.0%
CTTGTATATTCTCCCTTGTT+GGG - chr1_4:52004699-52004718 None:intergenic 35.0%
ACGAACTAAAAGAGAACTTG+AGG - chr1_4:52004937-52004956 None:intergenic 35.0%
! CTGTGCCATTGATATCAATA+AGG + chr1_4:52005046-52005065 Msa0168960:intron 35.0%
!! CTTGGCCTTATTGATATCAA+TGG - chr1_4:52005054-52005073 None:intergenic 35.0%
!!! ACCCTGGTTTTATACAAGTT+TGG - chr1_4:52005176-52005195 None:intergenic 35.0%
TTTGTTACACATATAGACCC+TGG - chr1_4:52005192-52005211 None:intergenic 35.0%
! TTTGTATTGCCACTTATCGT+TGG + chr1_4:52005487-52005506 Msa0168960:intron 35.0%
GTGCCAGAAAACGTTAATAT+AGG - chr1_4:52005525-52005544 None:intergenic 35.0%
TGTTATATAGTAGCTTCCAG+GGG - chr1_4:52005547-52005566 None:intergenic 35.0%
! CTTGTTATATAGTAGCTTCC+AGG - chr1_4:52005549-52005568 None:intergenic 35.0%
ATTGTTTAGTGACATAGTGG+TGG - chr1_4:52005743-52005762 None:intergenic 35.0%
! CTTCCTTCTGTGTAGATTTT+AGG + chr1_4:52005778-52005797 Msa0168960:intron 35.0%
! CTAGGCAATGTTGTTTGAAA+TGG + chr1_4:52006030-52006049 Msa0168960:intron 35.0%
GTTCACTTCTTGCTAATATC+TGG + chr1_4:52006055-52006074 Msa0168960:intron 35.0%
!!! GGTCGATATTTGTTTTACTC+AGG + chr1_4:52006077-52006096 Msa0168960:intron 35.0%
CTATTTCGAATTTCCCATCT+CGG + chr1_4:52006107-52006126 Msa0168960:CDS 35.0%
GTGTGATAGATAAGGTGAAA+AGG + chr1_4:52006137-52006156 Msa0168960:CDS 35.0%
GACTGAAGCAGTAGAAAATT+TGG + chr1_4:52006210-52006229 Msa0168960:CDS 35.0%
TGAAATATCCCAAAGAACTC+AGG - chr1_4:52006380-52006399 None:intergenic 35.0%
TCATTCTGTTATTGATGCGA+TGG + chr1_4:52006397-52006416 Msa0168960:three_prime_UTR 35.0%
CATGGCAAATTAAAAGTGGA+TGG - chr1_4:52006426-52006445 None:intergenic 35.0%
!!! CATCCACTTTTAATTTGCCA+TGG + chr1_4:52006424-52006443 Msa0168960:three_prime_UTR 35.0%
!!! AGGCGCTATTTTTGAATCAA+TGG + chr1_4:52006464-52006483 Msa0168960:three_prime_UTR 35.0%
TGAAGATAGAAAGAAGGGAG+AGG - chr1_4:52000997-52001016 None:intergenic 40.0%
GGGGAATGAAGATAGAAAGA+AGG - chr1_4:52001003-52001022 None:intergenic 40.0%
!! CCATGGATTTGATTTGAAGG+GGG - chr1_4:52001022-52001041 None:intergenic 40.0%
GGAATAAGAAGGGGTTGTTA+TGG - chr1_4:52001054-52001073 None:intergenic 40.0%
! ATTATTGGAAGTGATGGGAG+AGG - chr1_4:52001159-52001178 None:intergenic 40.0%
!! TTGAGTTGGAGAATGAGAGT+GGG - chr1_4:52001272-52001291 None:intergenic 40.0%
AAAGCAGTTTCCAAATCCGT+TGG + chr1_4:52001341-52001360 Msa0168960:CDS 40.0%
AACAGTAGGAAGACCTTGAT+CGG - chr1_4:52001519-52001538 None:intergenic 40.0%
GTATTCCTAGCAACAACAGT+AGG - chr1_4:52001533-52001552 None:intergenic 40.0%
GTTAGGTTCCAATAGCGAAT+TGG + chr1_4:52001556-52001575 Msa0168960:CDS 40.0%
AAGAACCACCAATTCGCTAT+TGG - chr1_4:52001567-52001586 None:intergenic 40.0%
TGTACAAATCTAGCCACCAA+TGG - chr1_4:52001590-52001609 None:intergenic 40.0%
!!! ACCTATTTTTGCCTCGTTTG+TGG + chr1_4:52001736-52001755 Msa0168960:CDS 40.0%
!!! CCTATTTTTGCCTCGTTTGT+GGG + chr1_4:52001737-52001756 Msa0168960:CDS 40.0%
!!! CTATTTTTGCCTCGTTTGTG+GGG + chr1_4:52001738-52001757 Msa0168960:CDS 40.0%
TGCAAATGATGAGAGAACAC+TGG + chr1_4:52001886-52001905 Msa0168960:CDS 40.0%
! TGGTTTGCAGAGTATAACAG+AGG + chr1_4:52001958-52001977 Msa0168960:CDS 40.0%
CAGAGTATAACAGAGGTTGT+GGG + chr1_4:52001965-52001984 Msa0168960:CDS 40.0%
!! TGTGGGTGGATTTGTTAAAC+TGG + chr1_4:52001982-52002001 Msa0168960:CDS 40.0%
TATAAAGAAAGCTGCACCTC+TGG + chr1_4:52002066-52002085 Msa0168960:CDS 40.0%
TGGTTTCAAATGACAGATGG+AGG + chr1_4:52002193-52002212 Msa0168960:intron 40.0%
!! TCTCAACAAATTCTGGTTCC+TGG + chr1_4:52002294-52002313 Msa0168960:intron 40.0%
!! CTCAACAAATTCTGGTTCCT+GGG + chr1_4:52002295-52002314 Msa0168960:intron 40.0%
GTGTACTTACAGTGAGTAGT+TGG + chr1_4:52002498-52002517 Msa0168960:intron 40.0%
ACTCAACCTAAGGTGAAAGT+TGG - chr1_4:52002685-52002704 None:intergenic 40.0%
TATTTGACTCTATTGCCAGG+GGG + chr1_4:52002832-52002851 Msa0168960:intron 40.0%
ACTGTGATTAATGCGCTTCT+TGG + chr1_4:52002875-52002894 Msa0168960:CDS 40.0%
! ACTTCTCTAAGAATTGGAGC+GGG - chr1_4:52003028-52003047 None:intergenic 40.0%
CAAGGGAGAACCAAAACATA+AGG - chr1_4:52003075-52003094 None:intergenic 40.0%
AAGGACGAAGAAAAATGCTG+AGG - chr1_4:52003125-52003144 None:intergenic 40.0%
AAAAGAAGTAAGTCTGCTCG+AGG - chr1_4:52003230-52003249 None:intergenic 40.0%
CATACCTCACTTCCAGTTAA+AGG - chr1_4:52003272-52003291 None:intergenic 40.0%
CTTTAACTGGAAGTGAGGTA+TGG + chr1_4:52003270-52003289 Msa0168960:intron 40.0%
ACAGCAATGGAAGAAGAAAG+TGG + chr1_4:52003412-52003431 Msa0168960:CDS 40.0%
!! AGCTTCTAGGATTGATCTAG+TGG + chr1_4:52003518-52003537 Msa0168960:intron 40.0%
TAGGATTGATCTAGTGGTGA+GGG + chr1_4:52003524-52003543 Msa0168960:intron 40.0%
TCACAATTCAATGCAGCTTG+AGG + chr1_4:52003696-52003715 Msa0168960:intron 40.0%
GGAAGCAATGTCCTTCATTA+AGG + chr1_4:52003717-52003736 Msa0168960:CDS 40.0%
!! CTTATGGCTACCTCTAGTTT+TGG + chr1_4:52003817-52003836 Msa0168960:CDS 40.0%
GTTGAGTTTCCCAAAACTAG+AGG - chr1_4:52003830-52003849 None:intergenic 40.0%
AACGAAGAATTGTCAGTCTC+TGG + chr1_4:52003847-52003866 Msa0168960:CDS 40.0%
!! TCAGTCTCTGGTTCTCAATA+TGG + chr1_4:52003859-52003878 Msa0168960:CDS 40.0%
CTCAAGCTCGTAAAAGCTAT+TGG - chr1_4:52003887-52003906 None:intergenic 40.0%
TGGAAAATGAGAGCCTTTCT+TGG + chr1_4:52004109-52004128 Msa0168960:CDS 40.0%
AAAATGAGAGCCTTTCTTGG+AGG + chr1_4:52004112-52004131 Msa0168960:CDS 40.0%
! GAGTTTGTTTCCTCCAAGAA+AGG - chr1_4:52004125-52004144 None:intergenic 40.0%
GAGGAAACAAACTCTATCCA+TGG + chr1_4:52004131-52004150 Msa0168960:CDS 40.0%
ATCCACTAAATCACGTGTTG+TGG + chr1_4:52004253-52004272 Msa0168960:CDS 40.0%
GTCATTCTGAATTCTTGAGG+TGG - chr1_4:52004363-52004382 None:intergenic 40.0%
AAAAAGCGGAGTCCAGTTTA+TGG - chr1_4:52004509-52004528 None:intergenic 40.0%
TTGGATGTACTAGCCATGTT+GGG - chr1_4:52004543-52004562 None:intergenic 40.0%
TTTGGATGTACTAGCCATGT+TGG - chr1_4:52004544-52004563 None:intergenic 40.0%
! TCTCCCTTGTTGGGTATTTT+TGG - chr1_4:52004690-52004709 None:intergenic 40.0%
CCTTGTATATTCTCCCTTGT+TGG - chr1_4:52004700-52004719 None:intergenic 40.0%
CCAACAAGGGAGAATATACA+AGG + chr1_4:52004697-52004716 Msa0168960:CDS 40.0%
!! AGGAATCTTTTGAGAAGCGA+TGG + chr1_4:52004717-52004736 Msa0168960:CDS 40.0%
GTTGTTCAACTGAAGTGACT+TGG - chr1_4:52005072-52005091 None:intergenic 40.0%
GCAACCTGAATAAATCACAC+TGG - chr1_4:52005441-52005460 None:intergenic 40.0%
TTTCCCTGTTCAGTCTTTGT+TGG + chr1_4:52005618-52005637 Msa0168960:intron 40.0%
AGTCCAACAAAGACTGAACA+GGG - chr1_4:52005624-52005643 None:intergenic 40.0%
AAGTCCAACAAAGACTGAAC+AGG - chr1_4:52005625-52005644 None:intergenic 40.0%
GTCCCTAAAATCTACACAGA+AGG - chr1_4:52005784-52005803 None:intergenic 40.0%
!! GTGTAGATTTTAGGGACTCT+TGG + chr1_4:52005787-52005806 Msa0168960:intron 40.0%
ATCTGTACTGCAAACCACAT+TGG + chr1_4:52005849-52005868 Msa0168960:CDS 40.0%
AGCAAGAAGATCTTCCAATG+TGG - chr1_4:52005866-52005885 None:intergenic 40.0%
TTGGAAGATCTTCTTGCTCT+TGG + chr1_4:52005868-52005887 Msa0168960:CDS 40.0%
! GCTCTTGGAATTTGTTCTGT+TGG + chr1_4:52005883-52005902 Msa0168960:CDS 40.0%
! CTTGGAATTTGTTCTGTTGG+CGG + chr1_4:52005886-52005905 Msa0168960:CDS 40.0%
! TTGGAATTTGTTCTGTTGGC+GGG + chr1_4:52005887-52005906 Msa0168960:CDS 40.0%
GAAAAGGAAAGCAGATACCT+TGG + chr1_4:52006153-52006172 Msa0168960:CDS 40.0%
! TTCTTCAAGTTCATTCGCCA+AGG - chr1_4:52006173-52006192 None:intergenic 40.0%
AACTTGAAGAAGCCATGAAG+AGG + chr1_4:52006182-52006201 Msa0168960:CDS 40.0%
ACTTGAAGAAGCCATGAAGA+GGG + chr1_4:52006183-52006202 Msa0168960:CDS 40.0%
TTCAGTCAAATCCCTCTTCA+TGG - chr1_4:52006197-52006216 None:intergenic 40.0%
GATACCTTTGTGAGAGTCAT+TGG + chr1_4:52006232-52006251 Msa0168960:CDS 40.0%
TTTGCCAATGACTCTCACAA+AGG - chr1_4:52006239-52006258 None:intergenic 40.0%
! CTCAGGACACATGAAGATTT+TGG - chr1_4:52006363-52006382 None:intergenic 40.0%
TTCATGTGTCCTGAGTTCTT+TGG + chr1_4:52006368-52006387 Msa0168960:exon 40.0%
TCATGTGTCCTGAGTTCTTT+GGG + chr1_4:52006369-52006388 Msa0168960:exon 40.0%
AGGCCATGGCAAATTAAAAG+TGG - chr1_4:52006430-52006449 None:intergenic 40.0%
ATTTCCTGGAATAGGGTTCA+AGG - chr1_4:52006502-52006521 None:intergenic 40.0%
GATAGAAAGAAGGGAGAGGA+GGG - chr1_4:52000993-52001012 None:intergenic 45.0%
AGATAGAAAGAAGGGAGAGG+AGG - chr1_4:52000994-52001013 None:intergenic 45.0%
CCCCCTTCAAATCAAATCCA+TGG + chr1_4:52001019-52001038 Msa0168960:exon 45.0%
! TGTTATGGAACAGGGTACCA+TGG - chr1_4:52001039-52001058 None:intergenic 45.0%
GAAGGGGTTGTTATGGAACA+GGG - chr1_4:52001047-52001066 None:intergenic 45.0%
AGAAGGGGTTGTTATGGAAC+AGG - chr1_4:52001048-52001067 None:intergenic 45.0%
TAGGAGGGAGGAATAAGAAG+GGG - chr1_4:52001063-52001082 None:intergenic 45.0%
GTAGGAGGGAGGAATAAGAA+GGG - chr1_4:52001064-52001083 None:intergenic 45.0%
AGTAGGAGGGAGGAATAAGA+AGG - chr1_4:52001065-52001084 None:intergenic 45.0%
TTCTCGCCATTTCTTCCCTA+AGG + chr1_4:52001181-52001200 Msa0168960:CDS 45.0%
! TGAGTTGGAGAATGAGAGTG+GGG - chr1_4:52001271-52001290 None:intergenic 45.0%
!! GTTGAGTTGGAGAATGAGAG+TGG - chr1_4:52001273-52001292 None:intergenic 45.0%
ATTCGCCACGTGTAAGAATC+TGG - chr1_4:52001301-52001320 None:intergenic 45.0%
GTCTTCCTACTGTTGTTGCT+AGG + chr1_4:52001525-52001544 Msa0168960:CDS 45.0%
AGGTTCCAATAGCGAATTGG+TGG + chr1_4:52001559-52001578 Msa0168960:CDS 45.0%
! CGAATTGGTGGTTCTTCCAT+TGG + chr1_4:52001571-52001590 Msa0168960:CDS 45.0%
! ATTGGTGGTTCTTCCATTGG+TGG + chr1_4:52001574-52001593 Msa0168960:CDS 45.0%
!! CTTATATATGGTGGTGGTGG+TGG + chr1_4:52001659-52001678 Msa0168960:CDS 45.0%
CCCACAAACGAGGCAAAAAT+AGG - chr1_4:52001740-52001759 None:intergenic 45.0%
GAGAAACTTGTCATGCGATG+AGG + chr1_4:52001760-52001779 Msa0168960:CDS 45.0%
! GCTTCGAGTTTACTTGCTTC+TGG + chr1_4:52001782-52001801 Msa0168960:CDS 45.0%
! TTACTTGCTTCTGGTGCTAG+TGG + chr1_4:52001791-52001810 Msa0168960:CDS 45.0%
GCAGAGTATAACAGAGGTTG+TGG + chr1_4:52001964-52001983 Msa0168960:CDS 45.0%
AGTATAACAGAGGTTGTGGG+TGG + chr1_4:52001968-52001987 Msa0168960:CDS 45.0%
GATTGACGAGCCGTTCTTAT+TGG + chr1_4:52002247-52002266 Msa0168960:CDS 45.0%
GCCGTTCTTATTGGTCATAG+TGG + chr1_4:52002256-52002275 Msa0168960:CDS 45.0%
CTGGTTCCTGGGATATACAT+TGG + chr1_4:52002306-52002325 Msa0168960:intron 45.0%
GGGTGAGATGCAAATACAAC+TGG + chr1_4:52002767-52002786 Msa0168960:intron 45.0%
!! CACTGTGAAAGGTATCCAGA+TGG + chr1_4:52002983-52003002 Msa0168960:CDS 45.0%
TGGGTATTACCGAAGCTTCT+AGG + chr1_4:52003505-52003524 Msa0168960:intron 45.0%
CTAGGATTGATCTAGTGGTG+AGG + chr1_4:52003523-52003542 Msa0168960:intron 45.0%
TGATCTAGTGGTGAGGGATT+TGG + chr1_4:52003530-52003549 Msa0168960:intron 45.0%
GATCTAGTGGTGAGGGATTT+GGG + chr1_4:52003531-52003550 Msa0168960:intron 45.0%
GGATTTGGGTAGTATGCATG+AGG + chr1_4:52003545-52003564 Msa0168960:intron 45.0%
GGTAGTATGCATGAGGTCTT+AGG + chr1_4:52003552-52003571 Msa0168960:intron 45.0%
AGTGTACAATGGAGGCAATG+AGG - chr1_4:52003584-52003603 None:intergenic 45.0%
AGTCTGTCTGCAATTCCAAC+AGG - chr1_4:52003982-52004001 None:intergenic 45.0%
AGACTATCGATATGCCAAGC+AGG + chr1_4:52004032-52004051 Msa0168960:CDS 45.0%
TCGATATGCCAAGCAGGATT+TGG + chr1_4:52004038-52004057 Msa0168960:CDS 45.0%
TATTGCAGCCAAATCCTGCT+TGG - chr1_4:52004049-52004068 None:intergenic 45.0%
CTCCACAACACGTGATTTAG+TGG - chr1_4:52004258-52004277 None:intergenic 45.0%
TTCTGAATTCTTGAGGTGGC+AGG - chr1_4:52004359-52004378 None:intergenic 45.0%
TCCTTCTGTGTCATCTGTTC+AGG + chr1_4:52004391-52004410 Msa0168960:CDS 45.0%
ACCTGAACAGATGACACAGA+AGG - chr1_4:52004395-52004414 None:intergenic 45.0%
!!! ACTGGACTCCGCTTTTTCTT+TGG + chr1_4:52004512-52004531 Msa0168960:intron 45.0%
GGGGACATCCAAAGAAAAAG+CGG - chr1_4:52004523-52004542 None:intergenic 45.0%
TTCTTTGGATGTCCCCAACA+TGG + chr1_4:52004527-52004546 Msa0168960:intron 45.0%
TGGATGTACTAGCCATGTTG+GGG - chr1_4:52004542-52004561 None:intergenic 45.0%
AGCGCCAAAAATACCCAACA+AGG + chr1_4:52004683-52004702 Msa0168960:CDS 45.0%
GCGCCAAAAATACCCAACAA+GGG + chr1_4:52004684-52004703 Msa0168960:CDS 45.0%
CTAAAGAAAGGGGATCAAGC+TGG + chr1_4:52004791-52004810 Msa0168960:CDS 45.0%
TGAGCAAGAAGTTCGTGAGA+TGG + chr1_4:52004862-52004881 Msa0168960:CDS 45.0%
CAAAGGCAACTTTGCTGATG+TGG + chr1_4:52005021-52005040 Msa0168960:intron 45.0%
GGTGATCTATGATGCTAGAG+AGG + chr1_4:52005356-52005375 Msa0168960:intron 45.0%
CACATGAAGCCAACGATAAG+TGG - chr1_4:52005499-52005518 None:intergenic 45.0%
ATTGTCTGAGTCTTCCTCAG+CGG + chr1_4:52005667-52005686 Msa0168960:intron 45.0%
GTTTAGTGACATAGTGGTGG+TGG - chr1_4:52005740-52005759 None:intergenic 45.0%
TTAGGGACTCTTGGTCAACT+AGG + chr1_4:52005796-52005815 Msa0168960:CDS 45.0%
TTTCGAATTTCCCATCTCGG+AGG + chr1_4:52006110-52006129 Msa0168960:CDS 45.0%
TGGCAAACCTTACCAAGATC+AGG + chr1_4:52006252-52006271 Msa0168960:CDS 45.0%
TCTTGCTTAAAGAGAGGCCA+TGG - chr1_4:52006444-52006463 None:intergenic 45.0%
TGGCCTCTCTTTAAGCAAGA+AGG + chr1_4:52006444-52006463 Msa0168960:three_prime_UTR 45.0%
ATGTCCTTGAACCCTATTCC+AGG + chr1_4:52006495-52006514 Msa0168960:three_prime_UTR 45.0%
TGTAAGGGAGGGGTGAAGAA+GGG - chr1_4:52001088-52001107 None:intergenic 50.0%
AGGTGTGGATAGCGAGAGAA+GGG - chr1_4:52001113-52001132 None:intergenic 50.0%
! AATGGAGAGTGCGGCGAAAA+GGG - chr1_4:52001136-52001155 None:intergenic 50.0%
! TGGAAGTGATGGGAGAGGAA+TGG - chr1_4:52001154-52001173 None:intergenic 50.0%
CTTGGGCCTTAGGGAAGAAA+TGG - chr1_4:52001190-52001209 None:intergenic 50.0%
!! TGGGAAGAGTGTTCTAGGCT+GGG - chr1_4:52001219-52001238 None:intergenic 50.0%
! AGAGTGGGGACTTTGAGTTC+GGG - chr1_4:52001257-52001276 None:intergenic 50.0%
! GAGAGTGGGGACTTTGAGTT+CGG - chr1_4:52001258-52001277 None:intergenic 50.0%
GAATCTGGTCGGAGTTGAGT+TGG - chr1_4:52001286-52001305 None:intergenic 50.0%
TCCGACCAGATTCTTACACG+TGG + chr1_4:52001293-52001312 Msa0168960:CDS 50.0%
GCCACGTGTAAGAATCTGGT+CGG - chr1_4:52001297-52001316 None:intergenic 50.0%
ATCGGAGAGTAAAACGCCAC+TGG - chr1_4:52001501-52001520 None:intergenic 50.0%
! GGCGTTTTACTCTCCGATCA+AGG + chr1_4:52001503-52001522 Msa0168960:CDS 50.0%
CAAGTTTCTCCCCACAAACG+AGG - chr1_4:52001750-52001769 None:intergenic 50.0%
GAGAGAACACTGGATGATCG+TGG + chr1_4:52001896-52001915 Msa0168960:CDS 50.0%
! CTCTAAGAATTGGAGCGGGA+AGG - chr1_4:52003024-52003043 None:intergenic 50.0%
GAGACAACAGCGTCTTACAG+AGG + chr1_4:52003196-52003215 Msa0168960:CDS 50.0%
TCAGCTGATCGCCCTTTAAC+TGG + chr1_4:52003257-52003276 Msa0168960:CDS 50.0%
TCGCCCTTTAACTGGAAGTG+AGG + chr1_4:52003265-52003284 Msa0168960:CDS 50.0%
TACAGTGTACTTACCCACCC+AGG + chr1_4:52003340-52003359 Msa0168960:intron 50.0%
ACAGTGTACTTACCCACCCA+GGG + chr1_4:52003341-52003360 Msa0168960:intron 50.0%
AACATGTCATACCCCTGGGT+GGG - chr1_4:52003356-52003375 None:intergenic 50.0%
AAACATGTCATACCCCTGGG+TGG - chr1_4:52003357-52003376 None:intergenic 50.0%
TAGATGGGTCAACGATCGCA+GGG + chr1_4:52003926-52003945 Msa0168960:CDS 50.0%
TCGCAGGGATGGATAGAATG+AGG + chr1_4:52003941-52003960 Msa0168960:CDS 50.0%
!! TTAACGTTTTCTGGCACCCC+TGG + chr1_4:52005528-52005547 Msa0168960:intron 50.0%
GACTCTTGGTCAACTAGGAG+TGG + chr1_4:52005801-52005820 Msa0168960:CDS 50.0%
! AGAGCGCTTTATGATTCCCC+AGG + chr1_4:52005928-52005947 Msa0168960:intron 50.0%
TTCTGCGCCTGATCTTGGTA+AGG - chr1_4:52006262-52006281 None:intergenic 50.0%
ACCAAGATCAGGCGCAGAAT+AGG + chr1_4:52006263-52006282 Msa0168960:CDS 50.0%
GCGCCTTCTTGCTTAAAGAG+AGG - chr1_4:52006450-52006469 None:intergenic 50.0%
GGGAGGGAGATATGGATGGA+TGG - chr1_4:52000973-52000992 None:intergenic 55.0%
AGGAGGGAGGGAGATATGGA+TGG - chr1_4:52000977-52000996 None:intergenic 55.0%
GAAAGAAGGGAGAGGAGGGA+GGG - chr1_4:52000989-52001008 None:intergenic 55.0%
AGAAAGAAGGGAGAGGAGGG+AGG - chr1_4:52000990-52001009 None:intergenic 55.0%
TGAAGAAGGGAGTAGGAGGG+AGG - chr1_4:52001075-52001094 None:intergenic 55.0%
GGGTGAAGAAGGGAGTAGGA+GGG - chr1_4:52001078-52001097 None:intergenic 55.0%
GTGTAAGGGAGGGGTGAAGA+AGG - chr1_4:52001089-52001108 None:intergenic 55.0%
! AGAGAAGGGGGTGTAAGGGA+GGG - chr1_4:52001099-52001118 None:intergenic 55.0%
! AGCGAGAGAAGGGGGTGTAA+GGG - chr1_4:52001103-52001122 None:intergenic 55.0%
! TAGCGAGAGAAGGGGGTGTA+AGG - chr1_4:52001104-52001123 None:intergenic 55.0%
GTGTGGATAGCGAGAGAAGG+GGG - chr1_4:52001111-52001130 None:intergenic 55.0%
GGTGTGGATAGCGAGAGAAG+GGG - chr1_4:52001112-52001131 None:intergenic 55.0%
GAGGTGTGGATAGCGAGAGA+AGG - chr1_4:52001114-52001133 None:intergenic 55.0%
! GAATGGAGAGTGCGGCGAAA+AGG - chr1_4:52001137-52001156 None:intergenic 55.0%
TGGGAGAGGAATGGAGAGTG+CGG - chr1_4:52001145-52001164 None:intergenic 55.0%
! GAGTGTTCTAGGCTGGGGTT+GGG - chr1_4:52001213-52001232 None:intergenic 55.0%
! AGAGTGTTCTAGGCTGGGGT+TGG - chr1_4:52001214-52001233 None:intergenic 55.0%
!! GGGAAGAGTGTTCTAGGCTG+GGG - chr1_4:52001218-52001237 None:intergenic 55.0%
!! CTGGGAAGAGTGTTCTAGGC+TGG - chr1_4:52001220-52001239 None:intergenic 55.0%
CAGCCTAGAACACTCTTCCC+AGG + chr1_4:52001218-52001237 Msa0168960:CDS 55.0%
CCTAGAACACTCTTCCCAGG+CGG + chr1_4:52001221-52001240 Msa0168960:CDS 55.0%
! GAGTGGGGACTTTGAGTTCG+GGG - chr1_4:52001256-52001275 None:intergenic 55.0%
AACGCCACTGGTAACAGCAG+CGG - chr1_4:52001489-52001508 None:intergenic 55.0%
TGCCAGGGGGAATTCAACTC+TGG + chr1_4:52002845-52002864 Msa0168960:intron 55.0%
TGCCAGAGTTGAATTCCCCC+TGG - chr1_4:52002850-52002869 None:intergenic 55.0%
CAGTGTACTTACCCACCCAG+GGG + chr1_4:52003342-52003361 Msa0168960:intron 55.0%
AGAGCAGATCGAGCAGACAC+AGG - chr1_4:52003787-52003806 None:intergenic 55.0%
CTAGATGGGTCAACGATCGC+AGG + chr1_4:52003925-52003944 Msa0168960:CDS 55.0%
AGGGGATCAAGCTGGCTATC+AGG + chr1_4:52004799-52004818 Msa0168960:CDS 55.0%
CTTGGTCAACTAGGAGTGGC+TGG + chr1_4:52005805-52005824 Msa0168960:CDS 55.0%
CGAATTTCCCATCTCGGAGG+CGG + chr1_4:52006113-52006132 Msa0168960:CDS 55.0%
GAGGCGGCGTGTGATAGATA+AGG + chr1_4:52006129-52006148 Msa0168960:CDS 55.0%
GCCTATTCTGCGCCTGATCT+TGG - chr1_4:52006267-52006286 None:intergenic 55.0%
GGAGAGGAGGGAGGGAGATA+TGG - chr1_4:52000981-52001000 None:intergenic 60.0%
GGGGTGAAGAAGGGAGTAGG+AGG - chr1_4:52001079-52001098 None:intergenic 60.0%
GGAGGGGTGAAGAAGGGAGT+AGG - chr1_4:52001082-52001101 None:intergenic 60.0%
! GAGAAGGGGGTGTAAGGGAG+GGG - chr1_4:52001098-52001117 None:intergenic 60.0%
! GAGAGAAGGGGGTGTAAGGG+AGG - chr1_4:52001100-52001119 None:intergenic 60.0%
TCTAGGCTGGGGTTGGGCTT+GGG - chr1_4:52001207-52001226 None:intergenic 60.0%
TTCTAGGCTGGGGTTGGGCT+TGG - chr1_4:52001208-52001227 None:intergenic 60.0%
!! CCGCCTGGGAAGAGTGTTCT+AGG - chr1_4:52001224-52001243 None:intergenic 60.0%
!! TGGTGGTGGTGGTGGCGATA+TGG + chr1_4:52001667-52001686 Msa0168960:CDS 60.0%
TGGGTCAACGATCGCAGGGA+TGG + chr1_4:52003930-52003949 Msa0168960:CDS 60.0%
GTGCGGCGAAAAGGGAGGTG+TGG - chr1_4:52001128-52001147 None:intergenic 65.0%
! GGAGAGTGCGGCGAAAAGGG+AGG - chr1_4:52001133-52001152 None:intergenic 65.0%
GGGGTTGGGCTTGGGCCTTA+GGG - chr1_4:52001199-52001218 None:intergenic 65.0%
TGGGGTTGGGCTTGGGCCTT+AGG - chr1_4:52001200-52001219 None:intergenic 65.0%
! CGGGGCGTTTGTAACCGCCT+GGG - chr1_4:52001238-52001257 None:intergenic 65.0%
! TCGGGGCGTTTGTAACCGCC+TGG - chr1_4:52001239-52001258 None:intergenic 65.0%
GCTGCCGCTGCTGTTACCAG+TGG + chr1_4:52001482-52001501 Msa0168960:CDS 65.0%
TCACACGCCGCCTCCGAGAT+GGG - chr1_4:52006123-52006142 None:intergenic 65.0%
ATCACACGCCGCCTCCGAGA+TGG - chr1_4:52006124-52006143 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 52000953 52006682 52000953 ID=Msa0168960;Name=Msa0168960
chr1_4 mRNA 52000953 52006682 52000953 ID=Msa0168960-mRNA-1;Parent=Msa0168960;Name=Msa0168960-mRNA-1;_AED=0.15;_eAED=0.15;_QI=85|1|1|1|1|1|10|301|922
chr1_4 exon 52000953 52002087 52000953 ID=Msa0168960-mRNA-1:exon:15320;Parent=Msa0168960-mRNA-1
chr1_4 exon 52002209 52002277 52002209 ID=Msa0168960-mRNA-1:exon:15321;Parent=Msa0168960-mRNA-1
chr1_4 exon 52002851 52003045 52002851 ID=Msa0168960-mRNA-1:exon:15322;Parent=Msa0168960-mRNA-1
chr1_4 exon 52003155 52003286 52003155 ID=Msa0168960-mRNA-1:exon:15323;Parent=Msa0168960-mRNA-1
chr1_4 exon 52003392 52003478 52003392 ID=Msa0168960-mRNA-1:exon:15324;Parent=Msa0168960-mRNA-1
chr1_4 exon 52003712 52004152 52003712 ID=Msa0168960-mRNA-1:exon:15325;Parent=Msa0168960-mRNA-1
chr1_4 exon 52004248 52004412 52004248 ID=Msa0168960-mRNA-1:exon:15326;Parent=Msa0168960-mRNA-1
chr1_4 exon 52004653 52004883 52004653 ID=Msa0168960-mRNA-1:exon:15327;Parent=Msa0168960-mRNA-1
chr1_4 exon 52005793 52005908 52005793 ID=Msa0168960-mRNA-1:exon:15328;Parent=Msa0168960-mRNA-1
chr1_4 exon 52006099 52006682 52006099 ID=Msa0168960-mRNA-1:exon:15329;Parent=Msa0168960-mRNA-1
chr1_4 five_prime_UTR 52000953 52001037 52000953 ID=Msa0168960-mRNA-1:five_prime_utr;Parent=Msa0168960-mRNA-1
chr1_4 CDS 52001038 52002087 52001038 ID=Msa0168960-mRNA-1:cds;Parent=Msa0168960-mRNA-1
chr1_4 CDS 52002209 52002277 52002209 ID=Msa0168960-mRNA-1:cds;Parent=Msa0168960-mRNA-1
chr1_4 CDS 52002851 52003045 52002851 ID=Msa0168960-mRNA-1:cds;Parent=Msa0168960-mRNA-1
chr1_4 CDS 52003155 52003286 52003155 ID=Msa0168960-mRNA-1:cds;Parent=Msa0168960-mRNA-1
chr1_4 CDS 52003392 52003478 52003392 ID=Msa0168960-mRNA-1:cds;Parent=Msa0168960-mRNA-1
chr1_4 CDS 52003712 52004152 52003712 ID=Msa0168960-mRNA-1:cds;Parent=Msa0168960-mRNA-1
chr1_4 CDS 52004248 52004412 52004248 ID=Msa0168960-mRNA-1:cds;Parent=Msa0168960-mRNA-1
chr1_4 CDS 52004653 52004883 52004653 ID=Msa0168960-mRNA-1:cds;Parent=Msa0168960-mRNA-1
chr1_4 CDS 52005793 52005908 52005793 ID=Msa0168960-mRNA-1:cds;Parent=Msa0168960-mRNA-1
chr1_4 CDS 52006099 52006381 52006099 ID=Msa0168960-mRNA-1:cds;Parent=Msa0168960-mRNA-1
chr1_4 three_prime_UTR 52006382 52006682 52006382 ID=Msa0168960-mRNA-1:three_prime_utr;Parent=Msa0168960-mRNA-1
Gene Sequence

>Msa0168960

ATGGTACCCTGTTCCATAACAACCCCTTCTTATTCCTCCCTCCTACTCCCTTCTTCACCCCTCCCTTACACCCCCTTCTCTCGCTATCCACACCTCCCTTTTCGCCGCACTCTCCATTCCTCTCCCATCACTTCCAATAATGTTTCTCGCCATTTCTTCCCTAAGGCCCAAGCCCAACCCCAGCCTAGAACACTCTTCCCAGGCGGTTACAAACGCCCCGAACTCAAAGTCCCCACTCTCATTCTCCAACTCAACTCCGACCAGATTCTTACACGTGGCGAATCCGCACTAGACTTGATCGATAAAGCAGTTTCCAAATCCGTTGGAATTGTGATTCTAACTAGTAATGAACAAAGTGGTGGTAAACTCTACGAAGCTGCTTGTTTATTGAAATCGCTTATTCGTGATCGCGCTTATTTGTTAGTTGCTGAGCGTGTTGATATTGCTGCCGCTGCTGTTACCAGTGGCGTTTTACTCTCCGATCAAGGTCTTCCTACTGTTGTTGCTAGGAATACAATGTTAGGTTCCAATAGCGAATTGGTGGTTCTTCCATTGGTGGCTAGATTTGTACAAACTGTAGATGCTGCTGTAAATGCATCCAAATCTGAAGGTGCTGATTTTCTTATATATGGTGGTGGTGGTGGCGATATGGAACTTTTAAATCAGGAAATTGGTAATGTAGTTGAGAATGTGAAGATACCTATTTTTGCCTCGTTTGTGGGGAGAAACTTGTCATGCGATGAGGCTTCGAGTTTACTTGCTTCTGGTGCTAGTGGTTTTGTTACTAGTTTGAAAAGTTTTGGGATGTTTGATGATGATTTCCTTCGTAAATTATTTGATGGTGGGTTTGCAAATGATGAGAGAACACTGGATGATCGTGGTGATAAAATTGATGATGATAAATTAGTCAATGAGAGTAATGGTTTGCAGAGTATAACAGAGGTTGTGGGTGGATTTGTTAAACTGGAAGATAGGGAGAAACAGTTAATAGAAATGGAGAGGTCGGTGTTGAATGAAGCTATTGAAGTTATAAAGAAAGCTGCACCTCTGATGGAGGAAGTTTCGCTTCTTGATGATGCAGTTTCTCAGATTGACGAGCCGTTCTTATTGGTCATAGTGGGGGAATTCAACTCTGGCAAATCTACTGTGATTAATGCGCTTCTTGGAGAAAGATATCTCAAAGACGGGGTTGTTCCAACAACGAATGAGATCACATTTTTACGATATAATGACCTAGATATTGAAAAACAACACTGTGAAAGGTATCCAGATGGTCAATATATTTGCTACCTTCCCGCTCCAATTCTTAGAGAAATGACAATTGTTGATACACCTGGAACTAATGTAATTCTTCAGAGACAACAGCGTCTTACAGAGGAATTTGTGCCTCGAGCAGACTTACTTCTTTTTGTTATTTCAGCTGATCGCCCTTTAACTGGAAGTGAGGTTGCTTTTCTTCGTTATTCACAGCAATGGAAGAAGAAAGTGGTCTTTGTTTTGAACAAAGCTGACATTTATCAGAATAATCATGAGCTTGAGGAAGCAATGTCCTTCATTAAGGACAACATAAAGAGATTGTTGAAAACGGAAGATGTGATATTATATCCTGTGTCTGCTCGATCTGCTCTTGAAGCAAAACTTATGGCTACCTCTAGTTTTGGGAAACTCAACGAAGAATTGTCAGTCTCTGGTTCTCAATATGGTCCCAATAGCTTTTACGAGCTTGAGAAATTTTTATATAGCTTTCTAGATGGGTCAACGATCGCAGGGATGGATAGAATGAGGCTTAAACTTGAAACACCTGTTGGAATTGCAGACAGACTGATTTCTGCATGTGAAACTCTTGTGACACAAGACTATCGATATGCCAAGCAGGATTTGGCTGCAATAAACGATGTTGTCAACAGTGTAAATGATTTTGCATTGAATATGGAAAATGAGAGCCTTTCTTGGAGGAAACAAACTCTATCCATGATTGAATCCACTAAATCACGTGTTGTGGAGCTTGTAGAAGCTACAATGCAATTGTCAAATCTTGATATTGTTGTATCATATGTTTTCAAAGGAGAGAAACATGCGACACCTGCCACCTCAAGAATTCAGAATGACATAATTGATCCTTCTGTGTCATCTGTTCAGAAAATACTTGGAGATTACGAAAATTGGTTAAGCGCCAAAAATACCCAACAAGGGAGAATATACAAGGAATCTTTTGAGAAGCGATGGTCCTCATTGATTCATGAAAATAGTCAGAAGAATATTGAGACATATGAGTTGCTAAAGAAAGGGGATCAAGCTGGCTATCAGGTGATTGAAAATTTCAGCAGCAGTGCAGTTTCAAAGTCATTTGAGCAAGAAGTTCGTGAGATGATTTTAGGGACTCTTGGTCAACTAGGAGTGGCTGGTTTTTCTGCTTCACTATTGACATCTGTACTGCAAACCACATTGGAAGATCTTCTTGCTCTTGGAATTTGTTCTGTTGGCGGGTATATAGCTATTTCGAATTTCCCATCTCGGAGGCGGCGTGTGATAGATAAGGTGAAAAGGAAAGCAGATACCTTGGCGAATGAACTTGAAGAAGCCATGAAGAGGGATTTGACTGAAGCAGTAGAAAATTTGGATACCTTTGTGAGAGTCATTGGCAAACCTTACCAAGATCAGGCGCAGAATAGGCTAAACAAGCTAGTTGAGATTCAAGAAGAAATATCAAATATTGAAAAGAAACTTAGAACACTACAAATTGATATCCAAAATCTTCATGTGTCCTGA
Protein sequence

>Msa0168960

MVPCSITTPSYSSLLLPSSPLPYTPFSRYPHLPFRRTLHSSPITSNNVSRHFFPKAQAQPQPRTLFPGGYKRPELKVPTLILQLNSDQILTRGESALDLIDKAVSKSVGIVILTSNEQSGGKLYEAACLLKSLIRDRAYLLVAERVDIAAAAVTSGVLLSDQGLPTVVARNTMLGSNSELVVLPLVARFVQTVDAAVNASKSEGADFLIYGGGGGDMELLNQEIGNVVENVKIPIFASFVGRNLSCDEASSLLASGASGFVTSLKSFGMFDDDFLRKLFDGGFANDERTLDDRGDKIDDDKLVNESNGLQSITEVVGGFVKLEDREKQLIEMERSVLNEAIEVIKKAAPLMEEVSLLDDAVSQIDEPFLLVIVGEFNSGKSTVINALLGERYLKDGVVPTTNEITFLRYNDLDIEKQHCERYPDGQYICYLPAPILREMTIVDTPGTNVILQRQQRLTEEFVPRADLLLFVISADRPLTGSEVAFLRYSQQWKKKVVFVLNKADIYQNNHELEEAMSFIKDNIKRLLKTEDVILYPVSARSALEAKLMATSSFGKLNEELSVSGSQYGPNSFYELEKFLYSFLDGSTIAGMDRMRLKLETPVGIADRLISACETLVTQDYRYAKQDLAAINDVVNSVNDFALNMENESLSWRKQTLSMIESTKSRVVELVEATMQLSNLDIVVSYVFKGEKHATPATSRIQNDIIDPSVSSVQKILGDYENWLSAKNTQQGRIYKESFEKRWSSLIHENSQKNIETYELLKKGDQAGYQVIENFSSSAVSKSFEQEVREMILGTLGQLGVAGFSASLLTSVLQTTLEDLLALGICSVGGYIAISNFPSRRRRVIDKVKRKADTLANELEEAMKRDLTEAVENLDTFVRVIGKPYQDQAQNRLNKLVEIQEEISNIEKKLRTLQIDIQNLHVS*