AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1326800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1326800 MtrunA17_Chr8g0372901 93.891 311 5 1 1 311 120 416 0.0 594
Msa1326800 MtrunA17_Chr8g0372891 92.727 55 4 0 314 368 1 55 4.50e-32 115
Msa1326800 MtrunA17_Chr6g0459721 24.662 296 201 5 2 289 134 415 1.55e-19 89.4
Msa1326800 MtrunA17_Chr5g0404241 24.662 296 201 5 2 289 140 421 1.80e-19 89.4
Msa1326800 MtrunA17_Chr1g0161851 22.302 278 194 5 20 289 99 362 1.23e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1326800 AT5G66470.2 74.675 308 64 1 1 308 131 424 7.94e-176 496
Msa1326800 AT5G66470.1 74.675 308 64 1 1 308 131 424 7.94e-176 496
Msa1326800 AT1G30960.1 25.676 296 198 6 2 289 156 437 2.34e-21 95.1

Find 69 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGCAGAAAATTATCATTAT+TGG 0.131215 8_4:-41666810 Msa1326800:CDS
CTGTAACTATTGACAACTTT+TGG 0.219844 8_4:+41669250 None:intergenic
AAGTAAAGGTTAAAGAAAAT+TGG 0.277803 8_4:-41666388 Msa1326800:CDS
ACACCAAACTGTCTCGAGTA+TGG 0.280705 8_4:-41666093 Msa1326800:CDS
TTTCTTAAGCACTCTGGTTA+TGG 0.300154 8_4:-41666350 Msa1326800:CDS
ATGTTCTGGCTCAGATTATC+AGG 0.305498 8_4:-41669190 Msa1326800:intron
CGAGTTCTTTGTATATGTTC+TGG 0.312570 8_4:-41669204 Msa1326800:CDS
TGACCATACTTGGCACTAAC+TGG 0.325853 8_4:+41668154 None:intergenic
TGTATAAAATCTTTAGCATT+TGG 0.328995 8_4:+41666858 None:intergenic
TCTGGTTATGGAGGTCAAAT+AGG 0.330866 8_4:-41666338 Msa1326800:CDS
AGTGTACTCTTCCCAACATT+TGG 0.337378 8_4:+41669291 None:intergenic
GGTGAATGTTATAAGCTATA+AGG 0.364966 8_4:-41666886 Msa1326800:CDS
ATTCCAGTTAGTGCCAAGTA+TGG 0.379883 8_4:-41668157 Msa1326800:CDS
TCTTGTTAATGCTCTACAAC+AGG 0.388329 8_4:-41666134 Msa1326800:CDS
TTTGACTTTAAACATGCCTT+TGG 0.390366 8_4:+41668070 None:intergenic
GCAGGATATGTGGCTTTACT+TGG 0.408671 8_4:-41669318 None:intergenic
ACTCGATGCCTTGTTGTTTG+AGG 0.409336 8_4:+41669222 None:intergenic
TTTATCTTTGTGGCCTCCTA+TGG 0.409845 8_4:+41668360 None:intergenic
AACCCATACTCGAGACAGTT+TGG 0.426168 8_4:+41666090 None:intergenic
TTCAACCCCATGACCATACT+TGG 0.443016 8_4:+41668144 None:intergenic
CTTTGAACAGATTAAAGTAA+AGG 0.451174 8_4:-41666402 Msa1326800:intron
GGATAATAAGCTGGTCCGTT+AGG 0.454230 8_4:+41668091 None:intergenic
CTTGTTCATAATCAATAAAG+TGG 0.455540 8_4:+41668333 None:intergenic
TTACTTGGTAAACCAAATGT+TGG 0.457541 8_4:-41669303 Msa1326800:CDS
TGAAATCCCCTATGTGTGTC+AGG 0.460264 8_4:-41667101 Msa1326800:intron
TACTTGGTAAACCAAATGTT+GGG 0.461455 8_4:-41669302 Msa1326800:CDS
AGTTTCTTTGCAACTTCACC+AGG 0.463325 8_4:+41668295 None:intergenic
ACTGTATTCTACCATGCTGT+GGG 0.480633 8_4:+41665931 None:intergenic
GGGTTGAAGATGTCAAGAAC+TGG 0.484499 8_4:-41668129 Msa1326800:CDS
CACTGTATTCTACCATGCTG+TGG 0.491981 8_4:+41665930 None:intergenic
TTCACGTATAGTGGTGGTCA+TGG 0.502782 8_4:-41666021 Msa1326800:CDS
TTTATTGATTATGAACAAGA+AGG 0.513200 8_4:-41668329 Msa1326800:CDS
GAGTACACTGGCAAACCAAA+TGG 0.515192 8_4:-41669277 Msa1326800:CDS
TCTTTAGATTGATGAAGTGT+TGG 0.515468 8_4:-41668389 Msa1326800:intron
ATGACTACCTGACACACATA+GGG 0.516207 8_4:+41667094 None:intergenic
CCTTTGTTCTTGTAGAACAC+CGG 0.522067 8_4:+41668572 None:intergenic
GTTAGTGCCAAGTATGGTCA+TGG 0.523721 8_4:-41668151 Msa1326800:CDS
CACCAAACTGTCTCGAGTAT+GGG 0.533113 8_4:-41666092 Msa1326800:CDS
AATGACTACCTGACACACAT+AGG 0.533812 8_4:+41667093 None:intergenic
CATGCCTTTGGATAATAAGC+TGG 0.534355 8_4:+41668082 None:intergenic
CTTAAGCACTCTGGTTATGG+AGG 0.541168 8_4:-41666347 Msa1326800:CDS
AGTTAATGCTGATTGTGTGT+TGG 0.541523 8_4:-41668505 Msa1326800:CDS
CTTTGTTCTTGTAGAACACC+GGG 0.555225 8_4:+41668573 None:intergenic
AAAATTTACTGATGTTGATG+AGG 0.555551 8_4:-41668182 Msa1326800:CDS
CTTGTTAATGCTCTACAACA+GGG 0.563962 8_4:-41666133 Msa1326800:CDS
TTGTTCATAATCAATAAAGT+GGG 0.565630 8_4:+41668334 None:intergenic
AAGAAGGATCTTATCAAACC+TGG 0.576675 8_4:-41668313 Msa1326800:CDS
GTTCATAATCAATAAAGTGG+GGG 0.579333 8_4:+41668336 None:intergenic
TTCATAATCAATAAAGTGGG+GGG 0.583791 8_4:+41668337 None:intergenic
TTAGTGCCAAGTATGGTCAT+GGG 0.584192 8_4:-41668150 Msa1326800:CDS
TGTTCATAATCAATAAAGTG+GGG 0.599446 8_4:+41668335 None:intergenic
ATGGTACTTTATGATACTCC+CGG 0.599677 8_4:-41668591 Msa1326800:CDS
TGTATTCTACCATGCTGTGG+GGG 0.600648 8_4:+41665933 None:intergenic
AAAATTGGCGACAAGACGAA+GGG 0.603140 8_4:-41666373 Msa1326800:CDS
GAAGGGTTTCTTAAGCACTC+TGG 0.605070 8_4:-41666356 Msa1326800:CDS
ACACTGGCAAACCAAATGGT+TGG 0.605579 8_4:-41669273 Msa1326800:CDS
GAAAATTGGCGACAAGACGA+AGG 0.608653 8_4:-41666374 Msa1326800:CDS
CTGTATTCTACCATGCTGTG+GGG 0.619095 8_4:+41665932 None:intergenic
CAGATAAACCTCAAACAACA+AGG 0.633560 8_4:-41669230 Msa1326800:CDS
CGGACCAGCTTATTATCCAA+AGG 0.636393 8_4:-41668086 Msa1326800:CDS
TTGTTAATGCTCTACAACAG+GGG 0.640257 8_4:-41666132 Msa1326800:CDS
GTGTTGGAAGAAGCCATAGG+AGG 0.646829 8_4:-41668373 Msa1326800:CDS
TAGTGCCAAGTATGGTCATG+GGG 0.654939 8_4:-41668149 Msa1326800:CDS
ATACTCTCAAAGCTTCCTAA+CGG 0.655076 8_4:-41668106 Msa1326800:CDS
AAATGTTGGGAAGAGTACAC+TGG 0.663188 8_4:-41669289 Msa1326800:CDS
CCGGTGTTCTACAAGAACAA+AGG 0.666363 8_4:-41668572 Msa1326800:CDS
TGAAGTTGCAAAGAAACTTG+AGG 0.672367 8_4:-41668290 Msa1326800:intron
TGACTACCTGACACACATAG+GGG 0.686657 8_4:+41667095 None:intergenic
GAAGTGTTGGAAGAAGCCAT+AGG 0.698450 8_4:-41668376 Msa1326800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATAAAACTTTTTGAAATA+TGG + chr8_4:41666270-41666289 None:intergenic 10.0%
!! TTATATATAGAGATAAAAGA+AGG - chr8_4:41667242-41667261 Msa1326800:intron 15.0%
!! ATTTATGAAACAGAAAAATA+TGG + chr8_4:41668754-41668773 None:intergenic 15.0%
!! TTGATTATTCATAATATGAT+AGG + chr8_4:41668994-41669013 None:intergenic 15.0%
!! TAAAATCAAACAGAAGAATA+AGG + chr8_4:41666086-41666105 None:intergenic 20.0%
!!! CATATATAATGTCTTTTTCA+TGG + chr8_4:41666318-41666337 None:intergenic 20.0%
!! TTATAACAATCAAATAGACT+CGG + chr8_4:41666518-41666537 None:intergenic 20.0%
!!! TATAATAGTTCTTTTTCATG+AGG - chr8_4:41666533-41666552 Msa1326800:CDS 20.0%
!! TTGTTCATAATCAATAAAGT+GGG + chr8_4:41666902-41666921 None:intergenic 20.0%
!!! TTTATTGATTATGAACAAGA+AGG - chr8_4:41666904-41666923 Msa1326800:intron 20.0%
!! GTATTTATAACTTAATCAAC+TGG - chr8_4:41666991-41667010 Msa1326800:intron 20.0%
!! TGTATAAAATCTTTAGCATT+TGG + chr8_4:41668378-41668397 None:intergenic 20.0%
!!! AAATGCTAAAGATTTTATAC+AGG - chr8_4:41668377-41668396 Msa1326800:CDS 20.0%
!!! ACAAAAAAAAGTTTTTCTAG+AGG - chr8_4:41668701-41668720 Msa1326800:intron 20.0%
!! AAGTAAAGGTTAAAGAAAAT+TGG - chr8_4:41668845-41668864 Msa1326800:intron 20.0%
! ATCAGGTTTAATATTAAGTG+CGG - chr8_4:41666060-41666079 Msa1326800:CDS 25.0%
! TTGAACTTTGATATTACTCA+CGG + chr8_4:41666161-41666180 None:intergenic 25.0%
! CAGATCATTAATCTCTAAAT+GGG + chr8_4:41666375-41666394 None:intergenic 25.0%
! TCAGATCATTAATCTCTAAA+TGG + chr8_4:41666376-41666395 None:intergenic 25.0%
! TGTTCATAATCAATAAAGTG+GGG + chr8_4:41666901-41666920 None:intergenic 25.0%
! CTTGTTCATAATCAATAAAG+TGG + chr8_4:41666903-41666922 None:intergenic 25.0%
! AAAATTTACTGATGTTGATG+AGG - chr8_4:41667051-41667070 Msa1326800:intron 25.0%
! AACAATGGACATTTAAACAA+GGG + chr8_4:41667199-41667218 None:intergenic 25.0%
! TCGCAGAAAATTATCATTAT+TGG - chr8_4:41668423-41668442 Msa1326800:intron 25.0%
! CCAGAATCATAATAATATGT+TGG + chr8_4:41668528-41668547 None:intergenic 25.0%
! CCAACATATTATTATGATTC+TGG - chr8_4:41668525-41668544 Msa1326800:CDS 25.0%
!!! TTGTTGTAGCATTAGTTTTA+AGG - chr8_4:41668550-41668569 Msa1326800:CDS 25.0%
! ATCAAGGTTAAAGTGTAAAT+AGG + chr8_4:41668729-41668748 None:intergenic 25.0%
! CTTTGAACAGATTAAAGTAA+AGG - chr8_4:41668831-41668850 Msa1326800:intron 25.0%
! TACATAATATGATACAAGAC+TGG + chr8_4:41668953-41668972 None:intergenic 25.0%
!! ATAAATCTTTTCACGTATAG+TGG - chr8_4:41669203-41669222 Msa1326800:CDS 25.0%
TTACTTGGTAAACCAAATGT+TGG - chr8_4:41665930-41665949 Msa1326800:three_prime_UTR 30.0%
TACTTGGTAAACCAAATGTT+GGG - chr8_4:41665931-41665950 Msa1326800:three_prime_UTR 30.0%
! CTGTAACTATTGACAACTTT+TGG + chr8_4:41665986-41666005 None:intergenic 30.0%
AAAACAATGAACACAATGTC+TGG + chr8_4:41666247-41666266 None:intergenic 30.0%
AATGCTGTGCAGTAATATAA+TGG - chr8_4:41666415-41666434 Msa1326800:intron 30.0%
! TGCAGTAATATAATGGAATG+TGG - chr8_4:41666422-41666441 Msa1326800:intron 30.0%
AAATTCGTTAGTTCAACCAT+TGG - chr8_4:41666481-41666500 Msa1326800:intron 30.0%
AATTCGTTAGTTCAACCATT+GGG - chr8_4:41666482-41666501 Msa1326800:intron 30.0%
ATCTATGAATCTATTGCAGA+TGG - chr8_4:41666623-41666642 Msa1326800:intron 30.0%
!!! ACCAAAAACCATACTTTTTC+AGG + chr8_4:41666777-41666796 None:intergenic 30.0%
AAGAATGCGATTCAGAAAAA+AGG + chr8_4:41666824-41666843 None:intergenic 30.0%
TCTTTAGATTGATGAAGTGT+TGG - chr8_4:41666844-41666863 Msa1326800:CDS 30.0%
TTCATAATCAATAAAGTGGG+GGG + chr8_4:41666899-41666918 None:intergenic 30.0%
GTTCATAATCAATAAAGTGG+GGG + chr8_4:41666900-41666919 None:intergenic 30.0%
! TTTGACTTTAAACATGCCTT+TGG + chr8_4:41667166-41667185 None:intergenic 30.0%
CAACAATGGACATTTAAACA+AGG + chr8_4:41667200-41667219 None:intergenic 30.0%
CAATTACTCTTTCCATATTC+AGG + chr8_4:41667313-41667332 None:intergenic 30.0%
TACACAATGAGCAAATTAAC+TGG + chr8_4:41667495-41667514 None:intergenic 30.0%
AGCGTAACTAAGATATATTC+AGG + chr8_4:41667967-41667986 None:intergenic 30.0%
TGAATTCAGGAACAACATTA+AGG + chr8_4:41668032-41668051 None:intergenic 30.0%
GAAAGCTAGAAAGAAATTCA+AGG - chr8_4:41668232-41668251 Msa1326800:intron 30.0%
!! TTGTTGTTTCCAATTATTCC+AGG - chr8_4:41668326-41668345 Msa1326800:CDS 30.0%
TAACATTCACCTGGAATAAT+TGG + chr8_4:41668338-41668357 None:intergenic 30.0%
TATAGCTTATAACATTCACC+TGG + chr8_4:41668347-41668366 None:intergenic 30.0%
GGTGAATGTTATAAGCTATA+AGG - chr8_4:41668347-41668366 Msa1326800:CDS 30.0%
! TGCTAAAGATTTTATACAGG+TGG - chr8_4:41668380-41668399 Msa1326800:CDS 30.0%
! TTTTATACAGGTGGAGATTT+TGG - chr8_4:41668389-41668408 Msa1326800:intron 30.0%
GTTGATTACTTGTGAACTTA+TGG - chr8_4:41668474-41668493 Msa1326800:CDS 30.0%
!! TGAACTTATGGTATTGATTG+CGG - chr8_4:41668486-41668505 Msa1326800:CDS 30.0%
CTGCTAAATGATATCAAACT+CGG + chr8_4:41668587-41668606 None:intergenic 30.0%
ACAGAAAAATATGGAGATCA+AGG + chr8_4:41668745-41668764 None:intergenic 30.0%
AATTAATCACGAGCTTCAAT+TGG - chr8_4:41668771-41668790 Msa1326800:intron 30.0%
AATCAAAACACAGACTGAAA+CGG - chr8_4:41669008-41669027 Msa1326800:intron 30.0%
CAGATAAACCTCAAACAACA+AGG - chr8_4:41666003-41666022 Msa1326800:exon 35.0%
CGAGTTCTTTGTATATGTTC+TGG - chr8_4:41666029-41666048 Msa1326800:CDS 35.0%
TGATATTACTCACGGAATGA+AGG + chr8_4:41666153-41666172 None:intergenic 35.0%
! CTGGAAGATCACATCTATTT+TGG + chr8_4:41666228-41666247 None:intergenic 35.0%
TTGTACATGCATAGCAATGA+CGG + chr8_4:41666573-41666592 None:intergenic 35.0%
ATGGTACTTTATGATACTCC+CGG - chr8_4:41666642-41666661 Msa1326800:intron 35.0%
! AGTTAATGCTGATTGTGTGT+TGG - chr8_4:41666728-41666747 Msa1326800:intron 35.0%
GTAAAACGCCTGAAAAAGTA+TGG - chr8_4:41666766-41666785 Msa1326800:intron 35.0%
!! GCCTGAAAAAGTATGGTTTT+TGG - chr8_4:41666773-41666792 Msa1326800:intron 35.0%
AAGAAGGATCTTATCAAACC+TGG - chr8_4:41666920-41666939 Msa1326800:intron 35.0%
TGAAGTTGCAAAGAAACTTG+AGG - chr8_4:41666943-41666962 Msa1326800:intron 35.0%
ATACTCTCAAAGCTTCCTAA+CGG - chr8_4:41667127-41667146 Msa1326800:CDS 35.0%
TGTCCATTGTTGCATTATCA+CGG - chr8_4:41667208-41667227 Msa1326800:intron 35.0%
TAATCCTTTCGCTGTCTAAT+GGG + chr8_4:41667271-41667290 None:intergenic 35.0%
ATAATCCTTTCGCTGTCTAA+TGG + chr8_4:41667272-41667291 None:intergenic 35.0%
TTCTATTACGCTCCTGAATA+TGG - chr8_4:41667298-41667317 Msa1326800:intron 35.0%
GTTGTTCACGTTCATATATC+CGG + chr8_4:41667429-41667448 None:intergenic 35.0%
GAGCATGTAAATACGTGATA+TGG - chr8_4:41667636-41667655 Msa1326800:intron 35.0%
GAGATGCATCAATGTTATTG+TGG - chr8_4:41667677-41667696 Msa1326800:intron 35.0%
ATCAATGTTATTGTGGAGAC+TGG - chr8_4:41667684-41667703 Msa1326800:intron 35.0%
ACATTCACAAATCACGATAC+AGG + chr8_4:41667751-41667770 None:intergenic 35.0%
TATTTCCTGTACTGTCAAAC+TGG - chr8_4:41667773-41667792 Msa1326800:intron 35.0%
! TTTTTCCAGTTTGACAGTAC+AGG + chr8_4:41667781-41667800 None:intergenic 35.0%
TCATGTTATAGTGATAGCTG+TGG + chr8_4:41667917-41667936 None:intergenic 35.0%
AATGTTGTTCCTGAATTCAC+AGG - chr8_4:41668033-41668052 Msa1326800:intron 35.0%
TCAGCGACAAAAAATCTTTC+TGG + chr8_4:41668076-41668095 None:intergenic 35.0%
!! GAACTTATGGTATTGATTGC+GGG - chr8_4:41668487-41668506 Msa1326800:CDS 35.0%
ATTGAGCACAACATACATGT+AGG + chr8_4:41668613-41668632 None:intergenic 35.0%
TGTTGTGCTCAATTACTTTC+AGG - chr8_4:41668620-41668639 Msa1326800:intron 35.0%
TTTCTTAAGCACTCTGGTTA+TGG - chr8_4:41668883-41668902 Msa1326800:intron 35.0%
! TAGGTATTGTATGATGAGCA+CGG - chr8_4:41668914-41668933 Msa1326800:intron 35.0%
TCTTGTTAATGCTCTACAAC+AGG - chr8_4:41669099-41669118 Msa1326800:intron 35.0%
CTTGTTAATGCTCTACAACA+GGG - chr8_4:41669100-41669119 Msa1326800:intron 35.0%
TTGTTAATGCTCTACAACAG+GGG - chr8_4:41669101-41669120 Msa1326800:intron 35.0%
! AATCTTTTCACGTATAGTGG+TGG - chr8_4:41669206-41669225 Msa1326800:CDS 35.0%
AGTGTACTCTTCCCAACATT+TGG + chr8_4:41665945-41665964 None:intergenic 40.0%
! AAATGTTGGGAAGAGTACAC+TGG - chr8_4:41665944-41665963 Msa1326800:three_prime_UTR 40.0%
! ACAACTTTTGGCCAACCATT+TGG + chr8_4:41665974-41665993 None:intergenic 40.0%
!! ATGTTCTGGCTCAGATTATC+AGG - chr8_4:41666043-41666062 Msa1326800:CDS 40.0%
! AATGAAGGCACGAAATCAAG+AGG + chr8_4:41666138-41666157 None:intergenic 40.0%
TAGTTCAACCATTGGGTTCT+AGG - chr8_4:41666489-41666508 Msa1326800:intron 40.0%
TGTACATGCATAGCAATGAC+GGG + chr8_4:41666572-41666591 None:intergenic 40.0%
CTTTGTTCTTGTAGAACACC+GGG + chr8_4:41666663-41666682 None:intergenic 40.0%
CCTTTGTTCTTGTAGAACAC+CGG + chr8_4:41666664-41666683 None:intergenic 40.0%
TTTATCTTTGTGGCCTCCTA+TGG + chr8_4:41666876-41666895 None:intergenic 40.0%
AGTTTCTTTGCAACTTCACC+AGG + chr8_4:41666941-41666960 None:intergenic 40.0%
GTTGCAAAGAAACTTGAGGT+TGG - chr8_4:41666947-41666966 Msa1326800:intron 40.0%
! GATTTTTCCTGTGTTTGCAG+TGG - chr8_4:41667023-41667042 Msa1326800:intron 40.0%
TTGTATACCACTGCAAACAC+AGG + chr8_4:41667033-41667052 None:intergenic 40.0%
ATTCCAGTTAGTGCCAAGTA+TGG - chr8_4:41667076-41667095 Msa1326800:intron 40.0%
TTAGTGCCAAGTATGGTCAT+GGG - chr8_4:41667083-41667102 Msa1326800:intron 40.0%
CATGCCTTTGGATAATAAGC+TGG + chr8_4:41667154-41667173 None:intergenic 40.0%
! AGACCGTGATAATGCAACAA+TGG + chr8_4:41667214-41667233 None:intergenic 40.0%
GCTTATGGTGAACCTCAATA+AGG - chr8_4:41667394-41667413 Msa1326800:intron 40.0%
CTCAATAAGGTATAGCAGAC+CGG - chr8_4:41667407-41667426 Msa1326800:intron 40.0%
TTGATGCATCTCATGTCGTT+AGG + chr8_4:41667669-41667688 None:intergenic 40.0%
ATACAGGTGTGATTACACAC+TGG + chr8_4:41667735-41667754 None:intergenic 40.0%
! TAATGTACGCTGTCACTTGA+AGG + chr8_4:41667809-41667828 None:intergenic 40.0%
CAATAGTAGCATGTCAGTGT+TGG + chr8_4:41667888-41667907 None:intergenic 40.0%
ATGACTACCTGACACACATA+GGG + chr8_4:41668142-41668161 None:intergenic 40.0%
AATGACTACCTGACACACAT+AGG + chr8_4:41668143-41668162 None:intergenic 40.0%
! GCTTTCCTAAACCTTTTGCA+GGG + chr8_4:41668218-41668237 None:intergenic 40.0%
! AGCTTTCCTAAACCTTTTGC+AGG + chr8_4:41668219-41668238 None:intergenic 40.0%
GTGCTCAATTACTTTCAGGA+AGG - chr8_4:41668624-41668643 Msa1326800:intron 40.0%
AAAATTGGCGACAAGACGAA+GGG - chr8_4:41668860-41668879 Msa1326800:intron 40.0%
TCTGGTTATGGAGGTCAAAT+AGG - chr8_4:41668895-41668914 Msa1326800:intron 40.0%
!! ACACAGACTGAAACGGATTT+TGG - chr8_4:41669015-41669034 Msa1326800:intron 40.0%
ACTGTATTCTACCATGCTGT+GGG + chr8_4:41669305-41669324 None:intergenic 40.0%
GAGTACACTGGCAAACCAAA+TGG - chr8_4:41665956-41665975 Msa1326800:three_prime_UTR 45.0%
ACACTGGCAAACCAAATGGT+TGG - chr8_4:41665960-41665979 Msa1326800:three_prime_UTR 45.0%
!! ACTCGATGCCTTGTTGTTTG+AGG + chr8_4:41666014-41666033 None:intergenic 45.0%
CCGGTGTTCTACAAGAACAA+AGG - chr8_4:41666661-41666680 Msa1326800:intron 45.0%
!! GAAGTGTTGGAAGAAGCCAT+AGG - chr8_4:41666857-41666876 Msa1326800:CDS 45.0%
AAGTGGGGGGTTTATCTTTG+TGG + chr8_4:41666886-41666905 None:intergenic 45.0%
TGACCATACTTGGCACTAAC+TGG + chr8_4:41667082-41667101 None:intergenic 45.0%
GTTAGTGCCAAGTATGGTCA+TGG - chr8_4:41667082-41667101 Msa1326800:intron 45.0%
TAGTGCCAAGTATGGTCATG+GGG - chr8_4:41667084-41667103 Msa1326800:intron 45.0%
TTCAACCCCATGACCATACT+TGG + chr8_4:41667092-41667111 None:intergenic 45.0%
GGGTTGAAGATGTCAAGAAC+TGG - chr8_4:41667104-41667123 Msa1326800:CDS 45.0%
GGATAATAAGCTGGTCCGTT+AGG + chr8_4:41667145-41667164 None:intergenic 45.0%
CGGACCAGCTTATTATCCAA+AGG - chr8_4:41667147-41667166 Msa1326800:CDS 45.0%
TCAAACCTTGCTAGTACCCT+TGG - chr8_4:41667371-41667390 Msa1326800:intron 45.0%
CAAACCTTGCTAGTACCCTT+GGG - chr8_4:41667372-41667391 Msa1326800:intron 45.0%
CGGTCTGCTATACCTTATTG+AGG + chr8_4:41667409-41667428 None:intergenic 45.0%
ATGCATCTCATGTCGTTAGG+CGG + chr8_4:41667666-41667685 None:intergenic 45.0%
TCACAGCATCCTGTGAATTC+AGG + chr8_4:41668045-41668064 None:intergenic 45.0%
TGAAATCCCCTATGTGTGTC+AGG - chr8_4:41668132-41668151 Msa1326800:CDS 45.0%
TGACTACCTGACACACATAG+GGG + chr8_4:41668141-41668160 None:intergenic 45.0%
! TCCTAAACCTTTTGCAGGGT+GGG + chr8_4:41668214-41668233 None:intergenic 45.0%
! TTCCTAAACCTTTTGCAGGG+TGG + chr8_4:41668215-41668234 None:intergenic 45.0%
ACGAGCTTCAATTGGTACTG+TGG - chr8_4:41668779-41668798 Msa1326800:intron 45.0%
GGTACAATCGTCATCAACAC+TGG - chr8_4:41668800-41668819 Msa1326800:intron 45.0%
GAAAATTGGCGACAAGACGA+AGG - chr8_4:41668859-41668878 Msa1326800:intron 45.0%
GAAGGGTTTCTTAAGCACTC+TGG - chr8_4:41668877-41668896 Msa1326800:intron 45.0%
CTTAAGCACTCTGGTTATGG+AGG - chr8_4:41668886-41668905 Msa1326800:intron 45.0%
ATTGTATGATGAGCACGGTG+AGG - chr8_4:41668919-41668938 Msa1326800:intron 45.0%
TTGTATGATGAGCACGGTGA+GGG - chr8_4:41668920-41668939 Msa1326800:intron 45.0%
!! CAGACTGAAACGGATTTTGG+TGG - chr8_4:41669018-41669037 Msa1326800:intron 45.0%
ACACCAAACTGTCTCGAGTA+TGG - chr8_4:41669140-41669159 Msa1326800:intron 45.0%
CACCAAACTGTCTCGAGTAT+GGG - chr8_4:41669141-41669160 Msa1326800:intron 45.0%
AACCCATACTCGAGACAGTT+TGG + chr8_4:41669146-41669165 None:intergenic 45.0%
TTCACGTATAGTGGTGGTCA+TGG - chr8_4:41669212-41669231 Msa1326800:CDS 45.0%
TGTATTCTACCATGCTGTGG+GGG + chr8_4:41669303-41669322 None:intergenic 45.0%
CTGTATTCTACCATGCTGTG+GGG + chr8_4:41669304-41669323 None:intergenic 45.0%
CACTGTATTCTACCATGCTG+TGG + chr8_4:41669306-41669325 None:intergenic 45.0%
CTCGGTTACCTAGAACCCAA+TGG + chr8_4:41666500-41666519 None:intergenic 50.0%
GTGTTGGAAGAAGCCATAGG+AGG - chr8_4:41666860-41666879 Msa1326800:CDS 50.0%
GAAGCCCATTAGACAGCGAA+AGG - chr8_4:41667264-41667283 Msa1326800:intron 50.0%
!! TAAGCCCAAGGGTACTAGCA+AGG + chr8_4:41667379-41667398 None:intergenic 50.0%
TGCTAGTACCCTTGGGCTTA+TGG - chr8_4:41667379-41667398 Msa1326800:intron 50.0%
GAGGTTCACCATAAGCCCAA+GGG + chr8_4:41667390-41667409 None:intergenic 50.0%
TGAGGTTCACCATAAGCCCA+AGG + chr8_4:41667391-41667410 None:intergenic 50.0%
! CCTAAACCTTTTGCAGGGTG+GGG + chr8_4:41668213-41668232 None:intergenic 50.0%
AATACCCTTCCTCTCGTTGC+AGG - chr8_4:41669046-41669065 Msa1326800:intron 50.0%
CATACCTGCAACGAGAGGAA+GGG + chr8_4:41669053-41669072 None:intergenic 50.0%
ACATACCTGCAACGAGAGGA+AGG + chr8_4:41669054-41669073 None:intergenic 50.0%
TTGCACATACCTGCAACGAG+AGG + chr8_4:41669058-41669077 None:intergenic 50.0%
GCACGAAATCAAGAGGCGAG+GGG + chr8_4:41666131-41666150 None:intergenic 55.0%
GGCACGAAATCAAGAGGCGA+GGG + chr8_4:41666132-41666151 None:intergenic 55.0%
AGGCACGAAATCAAGAGGCG+AGG + chr8_4:41666133-41666152 None:intergenic 55.0%
CCCCACCCTGCAAAAGGTTT+AGG - chr8_4:41668210-41668229 Msa1326800:intron 55.0%
ATGCTTTAGCCCCCACAGCA+TGG - chr8_4:41669291-41669310 Msa1326800:CDS 55.0%
! CTTTTGCAGGGTGGGGAGTC+GGG + chr8_4:41668206-41668225 None:intergenic 60.0%
! CCTTTTGCAGGGTGGGGAGT+CGG + chr8_4:41668207-41668226 None:intergenic 60.0%
CCGACTCCCCACCCTGCAAA+AGG - chr8_4:41668204-41668223 Msa1326800:intron 65.0%
CAGGGTGGGGAGTCGGGAAG+TGG + chr8_4:41668200-41668219 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 41665921 41669334 41665921 ID=Msa1326800;Name=Msa1326800
chr8_4 mRNA 41665921 41669334 41665921 ID=Msa1326800-mRNA-1;Parent=Msa1326800;Name=Msa1326800-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.66|0.6|0.9|0.77|0.8|10|90|368
chr8_4 exon 41665921 41666187 41665921 ID=Msa1326800-mRNA-1:exon:12200;Parent=Msa1326800-mRNA-1
chr8_4 exon 41666334 41666414 41666334 ID=Msa1326800-mRNA-1:exon:12199;Parent=Msa1326800-mRNA-1
chr8_4 exon 41666533 41666613 41666533 ID=Msa1326800-mRNA-1:exon:12198;Parent=Msa1326800-mRNA-1
chr8_4 exon 41666806 41666907 41666806 ID=Msa1326800-mRNA-1:exon:12197;Parent=Msa1326800-mRNA-1
chr8_4 exon 41667102 41667200 41667102 ID=Msa1326800-mRNA-1:exon:12196;Parent=Msa1326800-mRNA-1
chr8_4 exon 41667659 41667689 41667659 ID=Msa1326800-mRNA-1:exon:12195;Parent=Msa1326800-mRNA-1
chr8_4 exon 41668076 41668212 41668076 ID=Msa1326800-mRNA-1:exon:12194;Parent=Msa1326800-mRNA-1
chr8_4 exon 41668291 41668404 41668291 ID=Msa1326800-mRNA-1:exon:12193;Parent=Msa1326800-mRNA-1
chr8_4 exon 41668473 41668613 41668473 ID=Msa1326800-mRNA-1:exon:12192;Parent=Msa1326800-mRNA-1
chr8_4 exon 41669191 41669334 41669191 ID=Msa1326800-mRNA-1:exon:12191;Parent=Msa1326800-mRNA-1
chr8_4 CDS 41669191 41669334 41669191 ID=Msa1326800-mRNA-1:cds;Parent=Msa1326800-mRNA-1
chr8_4 CDS 41668473 41668613 41668473 ID=Msa1326800-mRNA-1:cds;Parent=Msa1326800-mRNA-1
chr8_4 CDS 41668291 41668404 41668291 ID=Msa1326800-mRNA-1:cds;Parent=Msa1326800-mRNA-1
chr8_4 CDS 41668076 41668212 41668076 ID=Msa1326800-mRNA-1:cds;Parent=Msa1326800-mRNA-1
chr8_4 CDS 41667659 41667689 41667659 ID=Msa1326800-mRNA-1:cds;Parent=Msa1326800-mRNA-1
chr8_4 CDS 41667102 41667200 41667102 ID=Msa1326800-mRNA-1:cds;Parent=Msa1326800-mRNA-1
chr8_4 CDS 41666806 41666907 41666806 ID=Msa1326800-mRNA-1:cds;Parent=Msa1326800-mRNA-1
chr8_4 CDS 41666533 41666613 41666533 ID=Msa1326800-mRNA-1:cds;Parent=Msa1326800-mRNA-1
chr8_4 CDS 41666334 41666414 41666334 ID=Msa1326800-mRNA-1:cds;Parent=Msa1326800-mRNA-1
chr8_4 CDS 41666011 41666187 41666011 ID=Msa1326800-mRNA-1:cds;Parent=Msa1326800-mRNA-1
chr8_4 three_prime_UTR 41665921 41666010 41665921 ID=Msa1326800-mRNA-1:three_prime_utr;Parent=Msa1326800-mRNA-1
Gene Sequence

>Msa1326800

TATGTGGCTTTACTTGGTAAACCAAATGTTGGGAAGAGTACACTGGCAAACCAAATGGTTGGCCAAAAGTTGTCAATAGTTACAGATAAACCTCAAACAACAAGGCATCGAGTTCTTTGTATATGTTCTGGCTCAGATTATCAGATGGTACTTTATGATACTCCCGGTGTTCTACAAGAACAAAGGCACAAGTTAGACTCAATGATGATGCAAAATGTTCGCAGCGCTACAGTTAATGCTGATTGTGTGTTGGTTCTCGTAGATGCATGTAAAACGCCTGAAAAAATTGATGAAGTGTTGGAAGAAGCCATAGGAGGCCACAAAGATAAACCCCCCACTTTATTGATTATGAACAAGAAGGATCTTATCAAACCTGGTGAAGTTGCAAAGAAACTTGAGTGGTATACAAAATTTACTGATGTTGATGAGGTTATTCCAGTTAGTGCCAAGTATGGTCATGGGGTTGAAGATGTCAAGAACTGGATACTCTCAAAGCTTCCTAACGGACCAGCTTATTATCCAAAGGCATGTTTAAATCATATTGTATTTTTTGAATTTGTCTATCAAGATGCTGTGAGTGAGCATCCAGAAAGATTTTTTGTCGCTGAAATTGTTAGAGAGAAGATATTTTTGCAATATCGAAATGAAATCCCCTATGTGTGTCAGGTGAATGTTATAAGCTATAAGGCTCGACCAAATGCTAAAGATTTTATACAGGTGGAGATTTTGGTTGAGAGAAACTCGCAGAAAATTATCATTATTGGAAAAGAAGGAAAAACTTTAAAACTGCTTGCAACAGCTGCGCGTCTTGACGTTGAAGATTTTCTACAAAAAAAAGTTTTTCTAGAGATTAAAGTAAAGGTTAAAGAAAATTGGCGACAAGACGAAGGGTTTCTTAAGCACTCTGGTTATGGAGGTCAAATAGGTATTGTATGTGCAATGATCAATTTTGTTAAGCAAATCTTGTTAATGCTCTACAACAGGGGTGAAGATCGTATTCGAACACCAAACTGTCTCGAGTATGGGTTGATATCACATTATGATTCAAAATGTTCAAACGAGTTCATAAATCTTTTCACGTATAGTGGTGGTCATGGATTCATTTGA

Protein sequence

>Msa1326800

YVALLGKPNVGKSTLANQMVGQKLSIVTDKPQTTRHRVLCICSGSDYQMVLYDTPGVLQEQRHKLDSMMMQNVRSATVNADCVLVLVDACKTPEKIDEVLEEAIGGHKDKPPTLLIMNKKDLIKPGEVAKKLEWYTKFTDVDEVIPVSAKYGHGVEDVKNWILSKLPNGPAYYPKACLNHIVFFEFVYQDAVSEHPERFFVAEIVREKIFLQYRNEIPYVCQVNVISYKARPNAKDFIQVEILVERNSQKIIIIGKEGKTLKLLATAARLDVEDFLQKKVFLEIKVKVKENWRQDEGFLKHSGYGGQIGIVCAMINFVKQILLMLYNRGEDRIRTPNCLEYGLISHYDSKCSNEFINLFTYSGGHGFI*