Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0244590 | XP_024632321.1 | 96.084 | 383 | 13 | 1 | 1 | 381 | 3 | 385 | 0.0 | 753 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0244590 | sp|Q9SW00|ORP4B_ARATH | 55.381 | 381 | 164 | 4 | 2 | 379 | 4 | 381 | 1.32e-149 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0244590 | G7INK5 | 96.063 | 381 | 13 | 1 | 3 | 381 | 2 | 382 | 0.0 | 748 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0172080 | Msa0244590 | 0.803326 | 3.676631e-49 | -8.615850e-47 |
| Msa0244590 | Msa1026640 | 0.814519 | 1.478211e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0244590 | MtrunA17_Chr2g0298561 | 96.063 | 381 | 13 | 1 | 3 | 381 | 2 | 382 | 0.0 | 748 |
| Msa0244590 | MtrunA17_Chr2g0298571 | 72.800 | 375 | 101 | 1 | 8 | 381 | 10 | 384 | 0.0 | 570 |
| Msa0244590 | MtrunA17_Chr4g0071881 | 67.810 | 379 | 115 | 4 | 8 | 379 | 16 | 394 | 0.0 | 514 |
| Msa0244590 | MtrunA17_Chr4g0071891 | 70.783 | 332 | 95 | 2 | 52 | 381 | 7 | 338 | 3.17e-170 | 478 |
| Msa0244590 | MtrunA17_Chr4g0031691 | 27.545 | 334 | 214 | 11 | 45 | 358 | 79 | 404 | 4.68e-20 | 91.3 |
| Msa0244590 | MtrunA17_Chr7g0238731 | 26.190 | 336 | 216 | 11 | 45 | 358 | 83 | 408 | 4.76e-16 | 79.3 |
| Msa0244590 | MtrunA17_Chr3g0131011 | 24.859 | 354 | 207 | 15 | 45 | 363 | 393 | 722 | 5.68e-12 | 67.4 |
| Msa0244590 | MtrunA17_Chr3g0115081 | 25.352 | 355 | 201 | 16 | 45 | 359 | 413 | 743 | 6.28e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0244590 | AT4G25850.1 | 55.381 | 381 | 164 | 4 | 2 | 379 | 4 | 381 | 1.34e-150 | 431 |
| Msa0244590 | AT5G57240.2 | 53.298 | 379 | 171 | 4 | 4 | 379 | 1 | 376 | 2.57e-149 | 427 |
| Msa0244590 | AT5G57240.5 | 53.298 | 379 | 171 | 4 | 4 | 379 | 1 | 376 | 2.57e-149 | 427 |
| Msa0244590 | AT5G57240.1 | 53.298 | 379 | 171 | 4 | 4 | 379 | 1 | 376 | 2.57e-149 | 427 |
| Msa0244590 | AT4G25850.2 | 55.381 | 381 | 164 | 4 | 2 | 379 | 106 | 483 | 8.20e-149 | 430 |
| Msa0244590 | AT5G57240.4 | 49.877 | 405 | 172 | 5 | 4 | 380 | 1 | 402 | 1.36e-143 | 414 |
| Msa0244590 | AT5G57240.3 | 49.877 | 405 | 172 | 5 | 4 | 380 | 1 | 402 | 1.36e-143 | 414 |
| Msa0244590 | AT4G25860.1 | 52.756 | 381 | 174 | 4 | 2 | 379 | 5 | 382 | 7.60e-142 | 409 |
| Msa0244590 | AT4G25860.2 | 53.600 | 375 | 168 | 4 | 8 | 379 | 5 | 376 | 2.34e-141 | 407 |
| Msa0244590 | AT4G25850.3 | 56.981 | 265 | 109 | 3 | 2 | 263 | 4 | 266 | 6.15e-104 | 308 |
| Msa0244590 | AT5G02100.3 | 27.576 | 330 | 211 | 11 | 45 | 354 | 51 | 372 | 3.30e-18 | 86.3 |
| Msa0244590 | AT5G02100.1 | 27.576 | 330 | 211 | 11 | 45 | 354 | 78 | 399 | 3.94e-18 | 86.3 |
| Msa0244590 | AT5G59420.1 | 27.628 | 333 | 213 | 11 | 45 | 357 | 78 | 402 | 7.03e-18 | 85.5 |
| Msa0244590 | AT3G09300.1 | 27.219 | 338 | 210 | 12 | 45 | 358 | 83 | 408 | 4.54e-17 | 82.8 |
| Msa0244590 | AT2G31030.1 | 25.895 | 363 | 214 | 17 | 45 | 368 | 136 | 482 | 8.30e-12 | 67.0 |
| Msa0244590 | AT2G31020.1 | 26.446 | 363 | 212 | 17 | 45 | 368 | 421 | 767 | 1.01e-11 | 67.0 |
Find 101 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATGTCTCTCCATGATTT+AGG | 0.195416 | 2_2:-23178957 | None:intergenic |
| ATAAGAATTCTTCCTGTTAC+TGG | 0.231549 | 2_2:+23179003 | Msa0244590:CDS |
| AAGGTTCTCTTTACAGTTAA+TGG | 0.252451 | 2_2:+23179168 | Msa0244590:CDS |
| ACTAATGATGACTTATAAAA+TGG | 0.253948 | 2_2:-23180352 | None:intergenic |
| GAATCACTTCTTAACGAAAA+TGG | 0.254434 | 2_2:-23176218 | None:intergenic |
| ATCTATAAACTAAACAATTA+TGG | 0.267897 | 2_2:+23180390 | Msa0244590:three_prime_UTR |
| CAACTGAATCGGCTCTTATT+TGG | 0.268015 | 2_2:+23180066 | Msa0244590:CDS |
| TACATAAGTCAATCATTCTT+TGG | 0.268802 | 2_2:+23179090 | Msa0244590:CDS |
| AGTCAATCATTCTTTGGATT+TGG | 0.271109 | 2_2:+23179096 | Msa0244590:CDS |
| TGAGACAATGTGAAATGTTT+AGG | 0.274415 | 2_2:-23180212 | None:intergenic |
| GCTCCTTATAATCCAATTCT+TGG | 0.280213 | 2_2:+23177920 | Msa0244590:CDS |
| AGAATTCTTATAAAGAGATT+TGG | 0.285918 | 2_2:-23178991 | None:intergenic |
| CTTGTACTTTGAGACAAAAT+TGG | 0.298635 | 2_2:-23180445 | None:intergenic |
| TCACCAAGAATTGGATTATA+AGG | 0.307580 | 2_2:-23177923 | None:intergenic |
| TTTATAAGTCATCATTAGTT+AGG | 0.324465 | 2_2:+23180356 | Msa0244590:three_prime_UTR |
| TGTTGATTCACTGACATCTA+AGG | 0.339119 | 2_2:+23179149 | Msa0244590:CDS |
| TTTGTCTCAAAGTACAAGTT+TGG | 0.339951 | 2_2:+23180450 | Msa0244590:three_prime_UTR |
| TCCTGTTACTGGAGTTGATT+GGG | 0.344104 | 2_2:+23179014 | Msa0244590:CDS |
| TGGTAATAGAAGATTAATAA+AGG | 0.358423 | 2_2:+23179119 | Msa0244590:CDS |
| TTCCTGTTACTGGAGTTGAT+TGG | 0.361020 | 2_2:+23179013 | Msa0244590:CDS |
| TTCCCAGTCTTTGCTCAAGA+TGG | 0.372216 | 2_2:-23180105 | None:intergenic |
| GACTTTGGAAAGTTGAATAA+TGG | 0.375860 | 2_2:-23177752 | None:intergenic |
| CTCAAAGCAAAGAAGGGTCT+TGG | 0.381086 | 2_2:+23180231 | Msa0244590:CDS |
| ACAAATTACAAGGTTACAAT+AGG | 0.388938 | 2_2:-23180290 | None:intergenic |
| AATATACGTTGCAATAGATT+AGG | 0.395019 | 2_2:-23176266 | None:intergenic |
| TGATGAGTCTCACCAAGAAT+TGG | 0.396025 | 2_2:-23177932 | None:intergenic |
| TCTTTACAGTTAATGGTCAC+TGG | 0.403190 | 2_2:+23179175 | Msa0244590:CDS |
| ACCCAATCAACTCCAGTAAC+AGG | 0.403466 | 2_2:-23179015 | None:intergenic |
| CATCCTTGACAGTTGGAGCT+TGG | 0.404350 | 2_2:-23179371 | None:intergenic |
| ATATTATAGTAATGCTGAAA+TGG | 0.404924 | 2_2:-23180324 | None:intergenic |
| TTACTGGAGTTGATTGGGTT+GGG | 0.408955 | 2_2:+23179019 | Msa0244590:CDS |
| AATATCAGGTGTATAGAAAC+AGG | 0.411151 | 2_2:+23179048 | Msa0244590:CDS |
| AGTCTTTGCTCAAGATGGCT+TGG | 0.411471 | 2_2:-23180100 | None:intergenic |
| AGGAACCCAAGTTTCTCCTT+TGG | 0.413382 | 2_2:-23180192 | None:intergenic |
| TAGCATTGAAGTTGTGACTT+TGG | 0.417021 | 2_2:-23177767 | None:intergenic |
| GGTAATAGAAGATTAATAAA+GGG | 0.417175 | 2_2:+23179120 | Msa0244590:CDS |
| CAATCATTCTTTGGATTTGG+TGG | 0.424280 | 2_2:+23179099 | Msa0244590:CDS |
| GGGTTGGGAATGTCAATATC+AGG | 0.433233 | 2_2:+23179034 | Msa0244590:CDS |
| TCTTAATGTCCTACTAGAAC+AGG | 0.449092 | 2_2:+23177970 | Msa0244590:CDS |
| TCAAAGCAAAGAAGGGTCTT+GGG | 0.449719 | 2_2:+23180232 | Msa0244590:CDS |
| CAGTTAATGGTCACTGGGAT+AGG | 0.453037 | 2_2:+23179181 | Msa0244590:CDS |
| ATGCAAAAGAAGTTATTTCA+AGG | 0.453420 | 2_2:+23179346 | Msa0244590:CDS |
| TAGGACATTAAGATTTCCCT+TGG | 0.465061 | 2_2:-23177960 | None:intergenic |
| GAGCGTGTGGCCAACTGAAT+CGG | 0.470504 | 2_2:+23180055 | Msa0244590:intron |
| ACCTCTGCATCCTTGACAGT+TGG | 0.470686 | 2_2:-23179378 | None:intergenic |
| CTGTTTACCTATTCAAAAGT+TGG | 0.472757 | 2_2:+23180256 | Msa0244590:CDS |
| CTTTACAGTTAATGGTCACT+GGG | 0.473952 | 2_2:+23179176 | Msa0244590:CDS |
| GAGAGTCCAAAGGAGAAACT+TGG | 0.475652 | 2_2:+23180186 | Msa0244590:CDS |
| CGGAAAACATAGAAATCATA+TGG | 0.479297 | 2_2:+23178619 | Msa0244590:CDS |
| ATACAAGTAATGGTGAAGAA+AGG | 0.481881 | 2_2:+23179313 | Msa0244590:CDS |
| CGTCTCGTCAGTTGCATGGA+GGG | 0.482943 | 2_2:-23178598 | None:intergenic |
| TATCCTGCTGCAAAGTTCAA+TGG | 0.486814 | 2_2:+23178648 | Msa0244590:CDS |
| AAGCTCAGGTGCACGGAAAA+CGG | 0.491909 | 2_2:+23178923 | Msa0244590:CDS |
| AAGCCATCTTGAGCAAAGAC+TGG | 0.494838 | 2_2:+23180102 | Msa0244590:CDS |
| AGGTACTTCAGTGGAAGCTC+AGG | 0.503215 | 2_2:+23178909 | Msa0244590:intron |
| GTTACTGGAGTTGATTGGGT+TGG | 0.503780 | 2_2:+23179018 | Msa0244590:CDS |
| TACAAGTAATGGTGAAGAAA+GGG | 0.504165 | 2_2:+23179314 | Msa0244590:CDS |
| TACTCTGTCCAGTGTTACAC+TGG | 0.506161 | 2_2:-23177829 | None:intergenic |
| TTTCCGTCTCGTCAGTTGCA+TGG | 0.508394 | 2_2:-23178602 | None:intergenic |
| ACATTGTCTCAAAGCAAAGA+AGG | 0.512371 | 2_2:+23180224 | Msa0244590:CDS |
| GCATGGAGGGCAGATACAGC+AGG | 0.518949 | 2_2:-23178585 | None:intergenic |
| TAGTTTATAGATAAATCAGC+TGG | 0.519276 | 2_2:-23180379 | None:intergenic |
| TTACCATTGAACTTTGCAGC+AGG | 0.521587 | 2_2:-23178651 | None:intergenic |
| CTTCTTAAGAATGTGCGGCC+AGG | 0.525043 | 2_2:+23176293 | Msa0244590:CDS |
| GACTCATTTCTGTTGTAGCA+TGG | 0.526069 | 2_2:+23177861 | Msa0244590:CDS |
| AAACATGTACCTGTTCTAGT+AGG | 0.534118 | 2_2:-23177979 | None:intergenic |
| AAACTGAGGCTCCTAAATCA+TGG | 0.537321 | 2_2:+23178946 | Msa0244590:CDS |
| AAGTCACAACTTCAATGCTA+TGG | 0.555129 | 2_2:+23177770 | Msa0244590:CDS |
| TTGACTTATGTAACTTAACT+CGG | 0.556810 | 2_2:-23179079 | None:intergenic |
| TGAGACTCATCATGTTTCCA+AGG | 0.561100 | 2_2:+23177943 | Msa0244590:CDS |
| GCTTAGTAAGTCTGAAGATG+TGG | 0.562051 | 2_2:-23177807 | None:intergenic |
| CAAATAAGAGCCGATTCAGT+TGG | 0.568756 | 2_2:-23180065 | None:intergenic |
| CCGTCTCGTCAGTTGCATGG+AGG | 0.573774 | 2_2:-23178599 | None:intergenic |
| GTAATAGAAGATTAATAAAG+GGG | 0.575521 | 2_2:+23179121 | Msa0244590:CDS |
| AAGAAGTGATTCAGATTCAG+AGG | 0.580601 | 2_2:+23176229 | Msa0244590:CDS |
| CCTCCATGCAACTGACGAGA+CGG | 0.581666 | 2_2:+23178599 | Msa0244590:CDS |
| AAACTATATGACAAATTACA+AGG | 0.584395 | 2_2:-23180300 | None:intergenic |
| GTTTGCTTCATCAGAGCGTG+TGG | 0.585015 | 2_2:+23180042 | Msa0244590:intron |
| TTACTAAGCCAGTGTAACAC+TGG | 0.589877 | 2_2:+23177821 | Msa0244590:CDS |
| AGCCATCTTGAGCAAAGACT+GGG | 0.590587 | 2_2:+23180103 | Msa0244590:CDS |
| TCTCAGAACCAATCAAAATG+AGG | 0.591412 | 2_2:-23180417 | None:intergenic |
| AGAGTCCAAAGGAGAAACTT+GGG | 0.596821 | 2_2:+23180187 | Msa0244590:CDS |
| GCTCCAAGCTCCAACTGTCA+AGG | 0.602521 | 2_2:+23179368 | Msa0244590:CDS |
| TACAAGGTTACAATAGGAGA+GGG | 0.603103 | 2_2:-23180284 | None:intergenic |
| AAACGTGTGAGATCAGATCC+TGG | 0.604506 | 2_2:-23176311 | None:intergenic |
| AAGGTTACAATAGGAGAGGG+TGG | 0.609878 | 2_2:-23180281 | None:intergenic |
| CATTGTCTCAAAGCAAAGAA+GGG | 0.612396 | 2_2:+23180225 | Msa0244590:CDS |
| TCAGTGGAAGCTCAGGTGCA+CGG | 0.614792 | 2_2:+23178916 | Msa0244590:CDS |
| TTTGGAAAGTTGAATAATGG+TGG | 0.620708 | 2_2:-23177749 | None:intergenic |
| TCGAGAGAAAGAGAGTCCAA+AGG | 0.621558 | 2_2:+23180176 | Msa0244590:CDS |
| TCCAACTGTCAAGGATGCAG+AGG | 0.624949 | 2_2:+23179377 | Msa0244590:CDS |
| TAAGTCTTCTTAAGAATGTG+CGG | 0.626069 | 2_2:+23176288 | Msa0244590:CDS |
| AGGTTACAATAGGAGAGGGT+GGG | 0.632365 | 2_2:-23180280 | None:intergenic |
| ACACTGAAGGATACAAGTAA+TGG | 0.634095 | 2_2:+23179303 | Msa0244590:CDS |
| GTGTATAGAAACAGGTCTTG+TGG | 0.641940 | 2_2:+23179056 | Msa0244590:CDS |
| TTACAAGGTTACAATAGGAG+AGG | 0.643460 | 2_2:-23180285 | None:intergenic |
| GAGACTCATCATGTTTCCAA+GGG | 0.644355 | 2_2:+23177944 | Msa0244590:CDS |
| TGCACGGAAAACGGAAACTG+AGG | 0.670770 | 2_2:+23178932 | Msa0244590:CDS |
| AAGAGAAGCAAAGAAAACTG+TGG | 0.683712 | 2_2:+23180133 | Msa0244590:CDS |
| CATGGAGGGCAGATACAGCA+GGG | 0.685622 | 2_2:-23178584 | None:intergenic |
| ATGCAGTACTGTAACACTGA+AGG | 0.694791 | 2_2:+23179290 | Msa0244590:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAACAATCATATATTT+TGG | - | chr2_2:23178252-23178271 | None:intergenic | 10.0% |
| !! | AAAGTAATCAAAATATTATG+AGG | + | chr2_2:23176504-23176523 | Msa0244590:intron | 15.0% |
| !! | ATTATCATATGAAGATAATA+TGG | + | chr2_2:23176556-23176575 | Msa0244590:intron | 15.0% |
| !!! | AAGAGTGTTTTTTATTTTTT+TGG | + | chr2_2:23176791-23176810 | Msa0244590:intron | 15.0% |
| !!! | TTTTTATTTTTTTGGTCAAT+CGG | + | chr2_2:23176799-23176818 | Msa0244590:intron | 15.0% |
| !!! | AAAAAATTTAATTGCACTTT+TGG | - | chr2_2:23176880-23176899 | None:intergenic | 15.0% |
| !!! | CAATTAAATTTTTTGTTTGA+AGG | + | chr2_2:23176886-23176905 | Msa0244590:intron | 15.0% |
| !!! | ATAAGATATTTTTTAGTTGT+TGG | - | chr2_2:23177028-23177047 | None:intergenic | 15.0% |
| !!! | TCATTTTTCTTTCATTTTAT+TGG | + | chr2_2:23177255-23177274 | Msa0244590:intron | 15.0% |
| !!! | AACACAATGTTATTTTTTTA+TGG | - | chr2_2:23177708-23177727 | None:intergenic | 15.0% |
| !! | ATCACATTATAGTATTAATT+AGG | - | chr2_2:23179272-23179291 | None:intergenic | 15.0% |
| !! | CTAAATATTTATACTTTGAT+TGG | - | chr2_2:23179545-23179564 | None:intergenic | 15.0% |
| !!! | TATTTTTATGTAATGTATGA+AGG | + | chr2_2:23179976-23179995 | Msa0244590:intron | 15.0% |
| !! | ATCTATAAACTAAACAATTA+TGG | + | chr2_2:23180390-23180409 | Msa0244590:three_prime_UTR | 15.0% |
| !!! | TACTTTTTTTCTTCTTTGTT+TGG | + | chr2_2:23176359-23176378 | Msa0244590:intron | 20.0% |
| !!! | TTTTAGGATGAGTAAAAATA+GGG | + | chr2_2:23176406-23176425 | Msa0244590:intron | 20.0% |
| !!! | CTTTTTTTCTTTGAATTTAG+AGG | + | chr2_2:23176440-23176459 | Msa0244590:intron | 20.0% |
| !!! | AGAGATTTTGTCAAAAATAA+CGG | - | chr2_2:23176534-23176553 | None:intergenic | 20.0% |
| !!! | TATTTTTTGGTCAAAAAACT+AGG | + | chr2_2:23176823-23176842 | Msa0244590:intron | 20.0% |
| !!! | ATTTTTTGGTCAAAAAACTA+GGG | + | chr2_2:23176824-23176843 | Msa0244590:intron | 20.0% |
| !!! | TTAGTTTTAAAAAGAATGAG+TGG | - | chr2_2:23177092-23177111 | None:intergenic | 20.0% |
| !! | TATCTAACAATGTTTGAATA+AGG | + | chr2_2:23177127-23177146 | Msa0244590:intron | 20.0% |
| !! | TTTAAAAAAACTGCATGAAA+GGG | - | chr2_2:23177325-23177344 | None:intergenic | 20.0% |
| !! | AAAAAATAACATTGTGTTGT+TGG | + | chr2_2:23177710-23177729 | Msa0244590:intron | 20.0% |
| !! | ATACTGACAATGTAAATTTA+CGG | + | chr2_2:23178416-23178435 | Msa0244590:intron | 20.0% |
| !! | TAAATTTGTATGCAAATCTA+TGG | + | chr2_2:23178726-23178745 | Msa0244590:intron | 20.0% |
| !! | AGAATTCTTATAAAGAGATT+TGG | - | chr2_2:23178994-23179013 | None:intergenic | 20.0% |
| !! | TGGTAATAGAAGATTAATAA+AGG | + | chr2_2:23179119-23179138 | Msa0244590:CDS | 20.0% |
| !! | GGTAATAGAAGATTAATAAA+GGG | + | chr2_2:23179120-23179139 | Msa0244590:CDS | 20.0% |
| !! | GTAATAGAAGATTAATAAAG+GGG | + | chr2_2:23179121-23179140 | Msa0244590:CDS | 20.0% |
| !!! | ACTTCTTAATATTTTGATGA+TGG | + | chr2_2:23179228-23179247 | Msa0244590:intron | 20.0% |
| !! | AAACTATATGACAAATTACA+AGG | - | chr2_2:23180303-23180322 | None:intergenic | 20.0% |
| !! | ATATTATAGTAATGCTGAAA+TGG | - | chr2_2:23180327-23180346 | None:intergenic | 20.0% |
| !! | ACTAATGATGACTTATAAAA+TGG | - | chr2_2:23180355-23180374 | None:intergenic | 20.0% |
| !! | TTTATAAGTCATCATTAGTT+AGG | + | chr2_2:23180356-23180375 | Msa0244590:three_prime_UTR | 20.0% |
| ! | AATATACGTTGCAATAGATT+AGG | - | chr2_2:23176269-23176288 | None:intergenic | 25.0% |
| !! | TTCTTCATTTCTTGTGTTTT+AGG | + | chr2_2:23176390-23176409 | Msa0244590:intron | 25.0% |
| !!! | GTTTTAGGATGAGTAAAAAT+AGG | + | chr2_2:23176405-23176424 | Msa0244590:intron | 25.0% |
| !! | TTTAGGATGAGTAAAAATAG+GGG | + | chr2_2:23176407-23176426 | Msa0244590:intron | 25.0% |
| ! | TTTGAATTTAGAGGAGAAAT+AGG | + | chr2_2:23176449-23176468 | Msa0244590:intron | 25.0% |
| ! | ATCATCAACATTTGGTTAAA+GGG | - | chr2_2:23176604-23176623 | None:intergenic | 25.0% |
| ! | AATCATCAACATTTGGTTAA+AGG | - | chr2_2:23176605-23176624 | None:intergenic | 25.0% |
| ! | AAGATTCAATCATCAACATT+TGG | - | chr2_2:23176612-23176631 | None:intergenic | 25.0% |
| !! | ATATGTTTAGTTTCGTGTTA+CGG | + | chr2_2:23176635-23176654 | Msa0244590:intron | 25.0% |
| ! | GAAAATTTATGTTAACGTTG+AGG | + | chr2_2:23176674-23176693 | Msa0244590:intron | 25.0% |
| ! | CAAAAGTAAAAGCTATAAAG+TGG | - | chr2_2:23176702-23176721 | None:intergenic | 25.0% |
| ! | TAAGATATCATGTAATTGTG+CGG | + | chr2_2:23176727-23176746 | Msa0244590:intron | 25.0% |
| ! | AGTGAACAAAAAAAATGTAC+AGG | - | chr2_2:23177064-23177083 | None:intergenic | 25.0% |
| ! | CTGTGAAAACAAAATTAAGT+TGG | - | chr2_2:23177168-23177187 | None:intergenic | 25.0% |
| !!! | ACTTAATTTTGTTTTCACAG+TGG | + | chr2_2:23177168-23177187 | Msa0244590:intron | 25.0% |
| !!! | CTCTTTGATTTTTACAACTT+TGG | - | chr2_2:23177210-23177229 | None:intergenic | 25.0% |
| !! | TTTCATTTTATTGGTGAAGT+AGG | + | chr2_2:23177264-23177283 | Msa0244590:intron | 25.0% |
| ! | TTAAAAAAACTGCATGAAAG+GGG | - | chr2_2:23177324-23177343 | None:intergenic | 25.0% |
| ! | GTTTAAAAAAACTGCATGAA+AGG | - | chr2_2:23177326-23177345 | None:intergenic | 25.0% |
| ! | AGTATACTCATGCATAAATA+TGG | + | chr2_2:23177352-23177371 | Msa0244590:intron | 25.0% |
| ! | ACTTTGGTATACATAATTGT+AGG | - | chr2_2:23178154-23178173 | None:intergenic | 25.0% |
| ! | AGTAACTCGAATAGAATATT+AGG | - | chr2_2:23178222-23178241 | None:intergenic | 25.0% |
| ! | ATGTTAAAACTTAGTTCAAC+CGG | + | chr2_2:23178299-23178318 | Msa0244590:intron | 25.0% |
| !!! | ATTGGTCTATATTTTAGCAT+TGG | - | chr2_2:23178354-23178373 | None:intergenic | 25.0% |
| ! | ATGCTAAAATATAGACCAAT+CGG | + | chr2_2:23178354-23178373 | Msa0244590:intron | 25.0% |
| ! | CAATGAATAATCTGTTAAGT+TGG | + | chr2_2:23178478-23178497 | Msa0244590:intron | 25.0% |
| ! | TACAAGAATTCAATCATCTA+TGG | - | chr2_2:23178538-23178557 | None:intergenic | 25.0% |
| ! | ATACTTGTTCTAACTCAATT+GGG | - | chr2_2:23178764-23178783 | None:intergenic | 25.0% |
| !!! | AAAAGTTTTAAGGAGGTTTA+GGG | + | chr2_2:23178838-23178857 | Msa0244590:intron | 25.0% |
| !!! | TTTTTTGGATAGACAAATGA+TGG | - | chr2_2:23178885-23178904 | None:intergenic | 25.0% |
| ! | TTGTCTATCCAAAAAATTGT+AGG | + | chr2_2:23178889-23178908 | Msa0244590:intron | 25.0% |
| ! | TTGACTTATGTAACTTAACT+CGG | - | chr2_2:23179082-23179101 | None:intergenic | 25.0% |
| ! | TACATAAGTCAATCATTCTT+TGG | + | chr2_2:23179090-23179109 | Msa0244590:CDS | 25.0% |
| !! | ATGCAAAAGAAGTTATTTCA+AGG | + | chr2_2:23179346-23179365 | Msa0244590:CDS | 25.0% |
| !!! | TATAGTACTTTTTTGTGTAC+CGG | - | chr2_2:23179836-23179855 | None:intergenic | 25.0% |
| ! | ACAAATTACAAGGTTACAAT+AGG | - | chr2_2:23180293-23180312 | None:intergenic | 25.0% |
| ! | TAGTTTATAGATAAATCAGC+TGG | - | chr2_2:23180382-23180401 | None:intergenic | 25.0% |
| GAATCACTTCTTAACGAAAA+TGG | - | chr2_2:23176221-23176240 | None:intergenic | 30.0% | |
| TAAGTCTTCTTAAGAATGTG+CGG | + | chr2_2:23176288-23176307 | Msa0244590:CDS | 30.0% | |
| !!! | TTGGTCAATCGGATATTTTT+TGG | + | chr2_2:23176810-23176829 | Msa0244590:intron | 30.0% |
| TTTGGAAAGTTGAATAATGG+TGG | - | chr2_2:23177752-23177771 | None:intergenic | 30.0% | |
| ! | GACTTTGGAAAGTTGAATAA+TGG | - | chr2_2:23177755-23177774 | None:intergenic | 30.0% |
| TCACCAAGAATTGGATTATA+AGG | - | chr2_2:23177926-23177945 | None:intergenic | 30.0% | |
| ACTCGAATAGAATATTAGGT+CGG | - | chr2_2:23178218-23178237 | None:intergenic | 30.0% | |
| !! | GGTTGAACTAAGTTTTAACA+TGG | - | chr2_2:23178300-23178319 | None:intergenic | 30.0% |
| TGGTTTGACTGTAAAAAAAC+AGG | - | chr2_2:23178334-23178353 | None:intergenic | 30.0% | |
| AAAATATAGACCAATCGGAT+CGG | + | chr2_2:23178359-23178378 | Msa0244590:intron | 30.0% | |
| !! | TATACATTAGAGGTGTCAAA+CGG | - | chr2_2:23178399-23178418 | None:intergenic | 30.0% |
| ACATTGTCAGTATACATTAG+AGG | - | chr2_2:23178409-23178428 | None:intergenic | 30.0% | |
| ! | TCTTGTATTTGACTGTTTTC+AGG | + | chr2_2:23178551-23178570 | Msa0244590:intron | 30.0% |
| CGGAAAACATAGAAATCATA+TGG | + | chr2_2:23178619-23178638 | Msa0244590:CDS | 30.0% | |
| CATACTTGTTCTAACTCAAT+TGG | - | chr2_2:23178765-23178784 | None:intergenic | 30.0% | |
| TTGAGTTAGAACAAGTATGT+AGG | + | chr2_2:23178766-23178785 | Msa0244590:intron | 30.0% | |
| !!! | GAAAAGTTTTAAGGAGGTTT+AGG | + | chr2_2:23178837-23178856 | Msa0244590:intron | 30.0% |
| !!! | CTGAAGTACCTACAATTTTT+TGG | - | chr2_2:23178900-23178919 | None:intergenic | 30.0% |
| AAAAATTGTAGGTACTTCAG+TGG | + | chr2_2:23178900-23178919 | Msa0244590:intron | 30.0% | |
| ATAAGAATTCTTCCTGTTAC+TGG | + | chr2_2:23179003-23179022 | Msa0244590:CDS | 30.0% | |
| AATATCAGGTGTATAGAAAC+AGG | + | chr2_2:23179048-23179067 | Msa0244590:CDS | 30.0% | |
| AGTCAATCATTCTTTGGATT+TGG | + | chr2_2:23179096-23179115 | Msa0244590:CDS | 30.0% | |
| AAGGTTCTCTTTACAGTTAA+TGG | + | chr2_2:23179168-23179187 | Msa0244590:CDS | 30.0% | |
| ATACAAGTAATGGTGAAGAA+AGG | + | chr2_2:23179313-23179332 | Msa0244590:CDS | 30.0% | |
| TACAAGTAATGGTGAAGAAA+GGG | + | chr2_2:23179314-23179333 | Msa0244590:CDS | 30.0% | |
| !! | TTAGAGAATGAAAAGTGTTC+CGG | + | chr2_2:23179561-23179580 | Msa0244590:intron | 30.0% |
| ! | TATTCATGCCTCAATTTTCA+TGG | - | chr2_2:23179607-23179626 | None:intergenic | 30.0% |
| ATACATTCACTCTATTCATC+CGG | + | chr2_2:23179631-23179650 | Msa0244590:intron | 30.0% | |
| GAAACATTGACATTAGAAGT+AGG | + | chr2_2:23179747-23179766 | Msa0244590:intron | 30.0% | |
| TACTTGAGAATCAAGTAAAG+CGG | + | chr2_2:23179857-23179876 | Msa0244590:intron | 30.0% | |
| TCGGAAAGAAAACAAATTAG+AGG | + | chr2_2:23179896-23179915 | Msa0244590:intron | 30.0% | |
| TGAGACAATGTGAAATGTTT+AGG | - | chr2_2:23180215-23180234 | None:intergenic | 30.0% | |
| CTGTTTACCTATTCAAAAGT+TGG | + | chr2_2:23180256-23180275 | Msa0244590:CDS | 30.0% | |
| !! | CTTGTACTTTGAGACAAAAT+TGG | - | chr2_2:23180448-23180467 | None:intergenic | 30.0% |
| TTTGTCTCAAAGTACAAGTT+TGG | + | chr2_2:23180450-23180469 | Msa0244590:three_prime_UTR | 30.0% | |
| AAGAAGTGATTCAGATTCAG+AGG | + | chr2_2:23176229-23176248 | Msa0244590:CDS | 35.0% | |
| TGAAGATAATATGGTCCAAG+TGG | + | chr2_2:23176565-23176584 | Msa0244590:intron | 35.0% | |
| !!! | GATTTTTACAACTTTGGAGC+CGG | - | chr2_2:23177204-23177223 | None:intergenic | 35.0% |
| ! | GTATATGTATCGATGTTGTG+CGG | + | chr2_2:23177580-23177599 | Msa0244590:intron | 35.0% |
| ! | TAGCATTGAAGTTGTGACTT+TGG | - | chr2_2:23177770-23177789 | None:intergenic | 35.0% |
| AAGTCACAACTTCAATGCTA+TGG | + | chr2_2:23177770-23177789 | Msa0244590:CDS | 35.0% | |
| TAAGGAGCAACACCAAAAAT+TGG | - | chr2_2:23177908-23177927 | None:intergenic | 35.0% | |
| GCTCCTTATAATCCAATTCT+TGG | + | chr2_2:23177920-23177939 | Msa0244590:CDS | 35.0% | |
| TAGGACATTAAGATTTCCCT+TGG | - | chr2_2:23177963-23177982 | None:intergenic | 35.0% | |
| TCTTAATGTCCTACTAGAAC+AGG | + | chr2_2:23177970-23177989 | Msa0244590:CDS | 35.0% | |
| AAACATGTACCTGTTCTAGT+AGG | - | chr2_2:23177982-23178001 | None:intergenic | 35.0% | |
| ATAATGCTGCATGCTTAGTT+TGG | + | chr2_2:23178007-23178026 | Msa0244590:intron | 35.0% | |
| ACCATGATTCAAACCTAAGT+TGG | - | chr2_2:23178079-23178098 | None:intergenic | 35.0% | |
| ACTTAGGTTTGAATCATGGT+TGG | + | chr2_2:23178079-23178098 | Msa0244590:intron | 35.0% | |
| CTTAGGTTTGAATCATGGTT+GGG | + | chr2_2:23178080-23178099 | Msa0244590:intron | 35.0% | |
| TTATGTATACCAAAGTTCCC+AGG | + | chr2_2:23178158-23178177 | Msa0244590:intron | 35.0% | |
| AATAGAATATTAGGTCGGGT+TGG | - | chr2_2:23178213-23178232 | None:intergenic | 35.0% | |
| CTCGAATAGAATATTAGGTC+GGG | - | chr2_2:23178217-23178236 | None:intergenic | 35.0% | |
| TAAAACTTAGTTCAACCGGA+CGG | + | chr2_2:23178303-23178322 | Msa0244590:intron | 35.0% | |
| !! | TCTGTTAAGTTGGCGAAATA+TGG | + | chr2_2:23178488-23178507 | Msa0244590:intron | 35.0% |
| !! | TTAAGTTGGCGAAATATGGT+TGG | + | chr2_2:23178492-23178511 | Msa0244590:intron | 35.0% |
| ! | GGAACACTGGAAAAGTTTTA+AGG | + | chr2_2:23178828-23178847 | Msa0244590:intron | 35.0% |
| !!! | ACACTGGAAAAGTTTTAAGG+AGG | + | chr2_2:23178831-23178850 | Msa0244590:intron | 35.0% |
| ! | GGTTTAGGGTTTACATCAAT+CGG | + | chr2_2:23178852-23178871 | Msa0244590:intron | 35.0% |
| CATATGTCTCTCCATGATTT+AGG | - | chr2_2:23178960-23178979 | None:intergenic | 35.0% | |
| CAATCATTCTTTGGATTTGG+TGG | + | chr2_2:23179099-23179118 | Msa0244590:CDS | 35.0% | |
| !! | TGTTGATTCACTGACATCTA+AGG | + | chr2_2:23179149-23179168 | Msa0244590:CDS | 35.0% |
| TCTTTACAGTTAATGGTCAC+TGG | + | chr2_2:23179175-23179194 | Msa0244590:CDS | 35.0% | |
| CTTTACAGTTAATGGTCACT+GGG | + | chr2_2:23179176-23179195 | Msa0244590:CDS | 35.0% | |
| ACACTGAAGGATACAAGTAA+TGG | + | chr2_2:23179303-23179322 | Msa0244590:CDS | 35.0% | |
| ! | TTCATGGAATGCTAGACTTT+TGG | - | chr2_2:23179591-23179610 | None:intergenic | 35.0% |
| CTAGCATTCCATGAAAATTG+AGG | + | chr2_2:23179596-23179615 | Msa0244590:intron | 35.0% | |
| !! | AGCTCTGAAAATTGGTGTTA+CGG | + | chr2_2:23179714-23179733 | Msa0244590:intron | 35.0% |
| AAGAGAAGCAAAGAAAACTG+TGG | + | chr2_2:23180133-23180152 | Msa0244590:CDS | 35.0% | |
| AAACTGTGGAGCAAAAACAA+AGG | + | chr2_2:23180147-23180166 | Msa0244590:CDS | 35.0% | |
| AACTGTGGAGCAAAAACAAA+GGG | + | chr2_2:23180148-23180167 | Msa0244590:CDS | 35.0% | |
| ACATTGTCTCAAAGCAAAGA+AGG | + | chr2_2:23180224-23180243 | Msa0244590:CDS | 35.0% | |
| CATTGTCTCAAAGCAAAGAA+GGG | + | chr2_2:23180225-23180244 | Msa0244590:CDS | 35.0% | |
| TACAAGGTTACAATAGGAGA+GGG | - | chr2_2:23180287-23180306 | None:intergenic | 35.0% | |
| TTACAAGGTTACAATAGGAG+AGG | - | chr2_2:23180288-23180307 | None:intergenic | 35.0% | |
| !! | ATGGTCTACCTCATTTTGAT+TGG | + | chr2_2:23180409-23180428 | Msa0244590:three_prime_UTR | 35.0% |
| TCTCAGAACCAATCAAAATG+AGG | - | chr2_2:23180420-23180439 | None:intergenic | 35.0% | |
| !!! | CATTTTGATTGGTTCTGAGA+AGG | + | chr2_2:23180420-23180439 | Msa0244590:three_prime_UTR | 35.0% |
| ! | ATCTGATCTCACACGTTTTC+AGG | + | chr2_2:23176316-23176335 | Msa0244590:CDS | 40.0% |
| TGTTACGGTCTGTAAAATCG+AGG | + | chr2_2:23176650-23176669 | Msa0244590:intron | 40.0% | |
| GATATCATGTAATTGTGCGG+TGG | + | chr2_2:23176730-23176749 | Msa0244590:intron | 40.0% | |
| TGCATGAAAGGGGAAAACTT+TGG | - | chr2_2:23177314-23177333 | None:intergenic | 40.0% | |
| TTCAAGTGTCAGACACGTAT+CGG | - | chr2_2:23177615-23177634 | None:intergenic | 40.0% | |
| ACTTGAACATGCCTCATATG+AGG | + | chr2_2:23177628-23177647 | Msa0244590:intron | 40.0% | |
| !! | AAGAGATTGATTCGACTGCA+GGG | + | chr2_2:23177674-23177693 | Msa0244590:intron | 40.0% |
| ! | ACATTGTGTTGTTGGTTGCT+TGG | + | chr2_2:23177718-23177737 | Msa0244590:intron | 40.0% |
| GCTTAGTAAGTCTGAAGATG+TGG | - | chr2_2:23177810-23177829 | None:intergenic | 40.0% | |
| TTACTAAGCCAGTGTAACAC+TGG | + | chr2_2:23177821-23177840 | Msa0244590:CDS | 40.0% | |
| GACTCATTTCTGTTGTAGCA+TGG | + | chr2_2:23177861-23177880 | Msa0244590:CDS | 40.0% | |
| TGATGAGTCTCACCAAGAAT+TGG | - | chr2_2:23177935-23177954 | None:intergenic | 40.0% | |
| TGAGACTCATCATGTTTCCA+AGG | + | chr2_2:23177943-23177962 | Msa0244590:CDS | 40.0% | |
| GAGACTCATCATGTTTCCAA+GGG | + | chr2_2:23177944-23177963 | Msa0244590:CDS | 40.0% | |
| GCCAACTTAGGTTTGAATCA+TGG | + | chr2_2:23178075-23178094 | Msa0244590:intron | 40.0% | |
| GTGTTTGACAAGTCTCGAAT+AGG | + | chr2_2:23178118-23178137 | Msa0244590:intron | 40.0% | |
| AAAACTTAGTTCAACCGGAC+GGG | + | chr2_2:23178304-23178323 | Msa0244590:intron | 40.0% | |
| AAAAAACAGGTAATCCCGTC+CGG | - | chr2_2:23178321-23178340 | None:intergenic | 40.0% | |
| TATCCTGCTGCAAAGTTCAA+TGG | + | chr2_2:23178648-23178667 | Msa0244590:CDS | 40.0% | |
| TTACCATTGAACTTTGCAGC+AGG | - | chr2_2:23178654-23178673 | None:intergenic | 40.0% | |
| AAACTGAGGCTCCTAAATCA+TGG | + | chr2_2:23178946-23178965 | Msa0244590:CDS | 40.0% | |
| ! | TTCCTGTTACTGGAGTTGAT+TGG | + | chr2_2:23179013-23179032 | Msa0244590:CDS | 40.0% |
| ! | TCCTGTTACTGGAGTTGATT+GGG | + | chr2_2:23179014-23179033 | Msa0244590:CDS | 40.0% |
| ! | TTACTGGAGTTGATTGGGTT+GGG | + | chr2_2:23179019-23179038 | Msa0244590:CDS | 40.0% |
| GTGTATAGAAACAGGTCTTG+TGG | + | chr2_2:23179056-23179075 | Msa0244590:CDS | 40.0% | |
| ATGCAGTACTGTAACACTGA+AGG | + | chr2_2:23179290-23179309 | Msa0244590:intron | 40.0% | |
| ATGCGCAATATGTGTGTATG+TGG | + | chr2_2:23179409-23179428 | Msa0244590:intron | 40.0% | |
| TGCGCAATATGTGTGTATGT+GGG | + | chr2_2:23179410-23179429 | Msa0244590:intron | 40.0% | |
| !! | ATGCTAGACTTTTGGTGTAC+CGG | - | chr2_2:23179583-23179602 | None:intergenic | 40.0% |
| GAGCATGCAAGACTTGAAAT+CGG | + | chr2_2:23179686-23179705 | Msa0244590:intron | 40.0% | |
| !! | CGGACAATAGCTCTGAAAAT+TGG | + | chr2_2:23179706-23179725 | Msa0244590:intron | 40.0% |
| ! | ATTCAGGTTAAGGGGCTAAA+GGG | - | chr2_2:23179797-23179816 | None:intergenic | 40.0% |
| ! | AATTCAGGTTAAGGGGCTAA+AGG | - | chr2_2:23179798-23179817 | None:intergenic | 40.0% |
| TTTAGCCCCTTAACCTGAAT+TGG | + | chr2_2:23179797-23179816 | Msa0244590:intron | 40.0% | |
| TTAGCCCCTTAACCTGAATT+GGG | + | chr2_2:23179798-23179817 | Msa0244590:intron | 40.0% | |
| AATCAAGTAAAGCGGTACAG+AGG | + | chr2_2:23179865-23179884 | Msa0244590:intron | 40.0% | |
| ! | CAAATAAGAGCCGATTCAGT+TGG | - | chr2_2:23180068-23180087 | None:intergenic | 40.0% |
| ! | CAACTGAATCGGCTCTTATT+TGG | + | chr2_2:23180066-23180085 | Msa0244590:CDS | 40.0% |
| AGAGTCCAAAGGAGAAACTT+GGG | + | chr2_2:23180187-23180206 | Msa0244590:CDS | 40.0% | |
| TCAAAGCAAAGAAGGGTCTT+GGG | + | chr2_2:23180232-23180251 | Msa0244590:CDS | 40.0% | |
| AAACGTGTGAGATCAGATCC+TGG | - | chr2_2:23176314-23176333 | None:intergenic | 45.0% | |
| GATAATATGGTCCAAGTGGC+TGG | + | chr2_2:23176569-23176588 | Msa0244590:intron | 45.0% | |
| ATCATGTAATTGTGCGGTGG+TGG | + | chr2_2:23176733-23176752 | Msa0244590:intron | 45.0% | |
| GGTGAAAAGAAAAACGAGCG+TGG | + | chr2_2:23176754-23176773 | Msa0244590:intron | 45.0% | |
| GCACATACACTCCTCATATG+AGG | - | chr2_2:23177642-23177661 | None:intergenic | 45.0% | |
| !! | CAAGAGATTGATTCGACTGC+AGG | + | chr2_2:23177673-23177692 | Msa0244590:intron | 45.0% |
| TACTCTGTCCAGTGTTACAC+TGG | - | chr2_2:23177832-23177851 | None:intergenic | 45.0% | |
| ! | ACCACACGTCCTCCAATTTT+TGG | + | chr2_2:23177893-23177912 | Msa0244590:CDS | 45.0% |
| ACCAAAAATTGGAGGACGTG+TGG | - | chr2_2:23177897-23177916 | None:intergenic | 45.0% | |
| GGAGCAACACCAAAAATTGG+AGG | - | chr2_2:23177905-23177924 | None:intergenic | 45.0% | |
| GTGACAAGACTCTCACAACT+TGG | + | chr2_2:23178053-23178072 | Msa0244590:intron | 45.0% | |
| TCTCACAACTTGGCCAACTT+AGG | + | chr2_2:23178063-23178082 | Msa0244590:intron | 45.0% | |
| GTATACCAAAGTTCCCAGGT+TGG | + | chr2_2:23178162-23178181 | Msa0244590:intron | 45.0% | |
| ACCCAATCAACTCCAGTAAC+AGG | - | chr2_2:23179018-23179037 | None:intergenic | 45.0% | |
| ! | GTTACTGGAGTTGATTGGGT+TGG | + | chr2_2:23179018-23179037 | Msa0244590:CDS | 45.0% |
| GGGTTGGGAATGTCAATATC+AGG | + | chr2_2:23179034-23179053 | Msa0244590:CDS | 45.0% | |
| CAGTTAATGGTCACTGGGAT+AGG | + | chr2_2:23179181-23179200 | Msa0244590:CDS | 45.0% | |
| AAGTAGGCCTAATCCCACTA+GGG | + | chr2_2:23179763-23179782 | Msa0244590:intron | 45.0% | |
| CGGTACAGAGGACTTGATTT+CGG | + | chr2_2:23179877-23179896 | Msa0244590:intron | 45.0% | |
| AGTCTTTGCTCAAGATGGCT+TGG | - | chr2_2:23180103-23180122 | None:intergenic | 45.0% | |
| AAGCCATCTTGAGCAAAGAC+TGG | + | chr2_2:23180102-23180121 | Msa0244590:CDS | 45.0% | |
| AGCCATCTTGAGCAAAGACT+GGG | + | chr2_2:23180103-23180122 | Msa0244590:CDS | 45.0% | |
| TTCCCAGTCTTTGCTCAAGA+TGG | - | chr2_2:23180108-23180127 | None:intergenic | 45.0% | |
| TGTGGAGCAAAAACAAAGGG+AGG | + | chr2_2:23180151-23180170 | Msa0244590:CDS | 45.0% | |
| TCGAGAGAAAGAGAGTCCAA+AGG | + | chr2_2:23180176-23180195 | Msa0244590:CDS | 45.0% | |
| GAGAGTCCAAAGGAGAAACT+TGG | + | chr2_2:23180186-23180205 | Msa0244590:CDS | 45.0% | |
| AGGAACCCAAGTTTCTCCTT+TGG | - | chr2_2:23180195-23180214 | None:intergenic | 45.0% | |
| CTCAAAGCAAAGAAGGGTCT+TGG | + | chr2_2:23180231-23180250 | Msa0244590:CDS | 45.0% | |
| ! | GGTGGGACCAACTTTTGAAT+AGG | - | chr2_2:23180266-23180285 | None:intergenic | 45.0% |
| AGGTTACAATAGGAGAGGGT+GGG | - | chr2_2:23180283-23180302 | None:intergenic | 45.0% | |
| AAGGTTACAATAGGAGAGGG+TGG | - | chr2_2:23180284-23180303 | None:intergenic | 45.0% | |
| !! | ATAAAATAAAATAAAAACTT+TGG | - | chr2_2:23176996-23177015 | None:intergenic | 5.0% |
| !!! | TATTATAGATAATTTTTTTT+AGG | + | chr2_2:23177464-23177483 | Msa0244590:intron | 5.0% |
| !!! | ATTATAGATAATTTTTTTTA+GGG | + | chr2_2:23177465-23177484 | Msa0244590:intron | 5.0% |
| CTTCTTAAGAATGTGCGGCC+AGG | + | chr2_2:23176293-23176312 | Msa0244590:CDS | 50.0% | |
| GGTCAATACTACCAGCCACT+TGG | - | chr2_2:23176583-23176602 | None:intergenic | 50.0% | |
| ! | GTATCGATGTTGTGCGGTGT+CGG | + | chr2_2:23177586-23177605 | Msa0244590:intron | 50.0% |
| ! | TACCAAAGTTCCCAGGTTGG+TGG | + | chr2_2:23178165-23178184 | Msa0244590:intron | 50.0% |
| !! | ACCAAAGTTCCCAGGTTGGT+GGG | + | chr2_2:23178166-23178185 | Msa0244590:intron | 50.0% |
| ! | TGGTGGGCCTATTGACTGAA+TGG | + | chr2_2:23178182-23178201 | Msa0244590:intron | 50.0% |
| ! | GGTGGGCCTATTGACTGAAT+GGG | + | chr2_2:23178183-23178202 | Msa0244590:intron | 50.0% |
| !! | GAATATTAGGTCGGGTTGGC+TGG | - | chr2_2:23178209-23178228 | None:intergenic | 50.0% |
| GTCTAATGAGCCGATCCGAT+TGG | - | chr2_2:23178372-23178391 | None:intergenic | 50.0% | |
| !! | ATTAGAGGTGTCAAACGGCC+TGG | - | chr2_2:23178394-23178413 | None:intergenic | 50.0% |
| TTTCCGTCTCGTCAGTTGCA+TGG | - | chr2_2:23178605-23178624 | None:intergenic | 50.0% | |
| TAGGTACTACAGTCCCCTCT+AGG | + | chr2_2:23178785-23178804 | Msa0244590:intron | 50.0% | |
| ACAGTCCCCTCTAGGTAGTT+CGG | + | chr2_2:23178793-23178812 | Msa0244590:intron | 50.0% | |
| ACCAACCGAACTACCTAGAG+GGG | - | chr2_2:23178801-23178820 | None:intergenic | 50.0% | |
| CACCAACCGAACTACCTAGA+GGG | - | chr2_2:23178802-23178821 | None:intergenic | 50.0% | |
| TCACCAACCGAACTACCTAG+AGG | - | chr2_2:23178803-23178822 | None:intergenic | 50.0% | |
| !! | GTAGTTCGGTTGGTGAGCTA+AGG | + | chr2_2:23178807-23178826 | Msa0244590:intron | 50.0% |
| ! | GTTGGTGAGCTAAGGAACAC+TGG | + | chr2_2:23178815-23178834 | Msa0244590:intron | 50.0% |
| AGGTACTTCAGTGGAAGCTC+AGG | + | chr2_2:23178909-23178928 | Msa0244590:intron | 50.0% | |
| AAGCTCAGGTGCACGGAAAA+CGG | + | chr2_2:23178923-23178942 | Msa0244590:CDS | 50.0% | |
| TGCACGGAAAACGGAAACTG+AGG | + | chr2_2:23178932-23178951 | Msa0244590:CDS | 50.0% | |
| CATCCTTGACAGTTGGAGCT+TGG | - | chr2_2:23179374-23179393 | None:intergenic | 50.0% | |
| TCCAACTGTCAAGGATGCAG+AGG | + | chr2_2:23179377-23179396 | Msa0244590:CDS | 50.0% | |
| ACCTCTGCATCCTTGACAGT+TGG | - | chr2_2:23179381-23179400 | None:intergenic | 50.0% | |
| CTCTATTCATCCGGCTGAGT+CGG | + | chr2_2:23179640-23179659 | Msa0244590:intron | 50.0% | |
| GAAGTAGGCCTAATCCCACT+AGG | + | chr2_2:23179762-23179781 | Msa0244590:intron | 50.0% | |
| GTTTGCTTCATCAGAGCGTG+TGG | + | chr2_2:23180042-23180061 | Msa0244590:intron | 50.0% | |
| !! | TACAACTTTGGAGCCGGTCG+AGG | - | chr2_2:23177198-23177217 | None:intergenic | 55.0% |
| GTCAATAGGCCCACCAACCT+GGG | - | chr2_2:23178178-23178197 | None:intergenic | 55.0% | |
| AGTCAATAGGCCCACCAACC+TGG | - | chr2_2:23178179-23178198 | None:intergenic | 55.0% | |
| ! | GGCTGGCCCATTCAGTCAAT+AGG | - | chr2_2:23178192-23178211 | None:intergenic | 55.0% |
| ! | TCGGATCGGCTCATTAGACC+AGG | + | chr2_2:23178373-23178392 | Msa0244590:intron | 55.0% |
| CATGGAGGGCAGATACAGCA+GGG | - | chr2_2:23178587-23178606 | None:intergenic | 55.0% | |
| CGTCTCGTCAGTTGCATGGA+GGG | - | chr2_2:23178601-23178620 | None:intergenic | 55.0% | |
| CCTCCATGCAACTGACGAGA+CGG | + | chr2_2:23178599-23178618 | Msa0244590:CDS | 55.0% | |
| TCCCCTCTAGGTAGTTCGGT+TGG | + | chr2_2:23178797-23178816 | Msa0244590:intron | 55.0% | |
| TCAGTGGAAGCTCAGGTGCA+CGG | + | chr2_2:23178916-23178935 | Msa0244590:CDS | 55.0% | |
| GCTCCAAGCTCCAACTGTCA+AGG | + | chr2_2:23179368-23179387 | Msa0244590:CDS | 55.0% | |
| ! | CAGTTTGAAGCCGACTCAGC+CGG | - | chr2_2:23179653-23179672 | None:intergenic | 55.0% |
| ! | GCTGAGTCGGCTTCAAACTG+TGG | + | chr2_2:23179653-23179672 | Msa0244590:intron | 55.0% |
| CAGTCAGCCCTAGTGGGATT+AGG | - | chr2_2:23179773-23179792 | None:intergenic | 55.0% | |
| CTAATCCCACTAGGGCTGAC+TGG | + | chr2_2:23179771-23179790 | Msa0244590:intron | 55.0% | |
| GCCCCTTAACCTGAATTGGG+CGG | + | chr2_2:23179801-23179820 | Msa0244590:intron | 55.0% | |
| ! | CCCGCCCAATTCAGGTTAAG+GGG | - | chr2_2:23179805-23179824 | None:intergenic | 55.0% |
| CCCCTTAACCTGAATTGGGC+GGG | + | chr2_2:23179802-23179821 | Msa0244590:intron | 55.0% | |
| ! | CCCCGCCCAATTCAGGTTAA+GGG | - | chr2_2:23179806-23179825 | None:intergenic | 55.0% |
| CCCTTAACCTGAATTGGGCG+GGG | + | chr2_2:23179803-23179822 | Msa0244590:intron | 55.0% | |
| !! | AAAAGTGCCCCGCCCAATTC+AGG | - | chr2_2:23179813-23179832 | None:intergenic | 55.0% |
| !! | AATTGGGCGGGGCACTTTTC+CGG | + | chr2_2:23179814-23179833 | Msa0244590:intron | 55.0% |
| GAGCGTGTGGCCAACTGAAT+CGG | + | chr2_2:23180055-23180074 | Msa0244590:intron | 55.0% | |
| TCACAGTGGTCCTCCTCGAC+CGG | + | chr2_2:23177182-23177201 | Msa0244590:intron | 60.0% | |
| !! | AACTTTGGAGCCGGTCGAGG+AGG | - | chr2_2:23177195-23177214 | None:intergenic | 60.0% |
| GCCCACCAACCTGGGAACTT+TGG | - | chr2_2:23178170-23178189 | None:intergenic | 60.0% | |
| GCATGGAGGGCAGATACAGC+AGG | - | chr2_2:23178588-23178607 | None:intergenic | 60.0% | |
| CCGTCTCGTCAGTTGCATGG+AGG | - | chr2_2:23178602-23178621 | None:intergenic | 60.0% | |
| AAGGGCCAGTCAGCCCTAGT+GGG | - | chr2_2:23179779-23179798 | None:intergenic | 60.0% | |
| AAAGGGCCAGTCAGCCCTAG+TGG | - | chr2_2:23179780-23179799 | None:intergenic | 60.0% | |
| ! | GCCCCGCCCAATTCAGGTTA+AGG | - | chr2_2:23179807-23179826 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 23176182 | 23180515 | 23176182 | ID=Msa0244590;Name=Msa0244590 |
| chr2_2 | mRNA | 23176182 | 23180515 | 23176182 | ID=Msa0244590-mRNA-1;Parent=Msa0244590;Name=Msa0244590-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.83|1|1|1|6|208|381 |
| chr2_2 | exon | 23176182 | 23176337 | 23176182 | ID=Msa0244590-mRNA-1:exon:8838;Parent=Msa0244590-mRNA-1 |
| chr2_2 | exon | 23177746 | 23177991 | 23177746 | ID=Msa0244590-mRNA-1:exon:8839;Parent=Msa0244590-mRNA-1 |
| chr2_2 | exon | 23178573 | 23178669 | 23178573 | ID=Msa0244590-mRNA-1:exon:8840;Parent=Msa0244590-mRNA-1 |
| chr2_2 | exon | 23178911 | 23179202 | 23178911 | ID=Msa0244590-mRNA-1:exon:8841;Parent=Msa0244590-mRNA-1 |
| chr2_2 | exon | 23179296 | 23179398 | 23179296 | ID=Msa0244590-mRNA-1:exon:8842;Parent=Msa0244590-mRNA-1 |
| chr2_2 | exon | 23180056 | 23180515 | 23180056 | ID=Msa0244590-mRNA-1:exon:8843;Parent=Msa0244590-mRNA-1 |
| chr2_2 | CDS | 23176182 | 23176337 | 23176182 | ID=Msa0244590-mRNA-1:cds;Parent=Msa0244590-mRNA-1 |
| chr2_2 | CDS | 23177746 | 23177991 | 23177746 | ID=Msa0244590-mRNA-1:cds;Parent=Msa0244590-mRNA-1 |
| chr2_2 | CDS | 23178573 | 23178669 | 23178573 | ID=Msa0244590-mRNA-1:cds;Parent=Msa0244590-mRNA-1 |
| chr2_2 | CDS | 23178911 | 23179202 | 23178911 | ID=Msa0244590-mRNA-1:cds;Parent=Msa0244590-mRNA-1 |
| chr2_2 | CDS | 23179296 | 23179398 | 23179296 | ID=Msa0244590-mRNA-1:cds;Parent=Msa0244590-mRNA-1 |
| chr2_2 | CDS | 23180056 | 23180307 | 23180056 | ID=Msa0244590-mRNA-1:cds;Parent=Msa0244590-mRNA-1 |
| chr2_2 | three_prime_UTR | 23180308 | 23180515 | 23180308 | ID=Msa0244590-mRNA-1:three_prime_utr;Parent=Msa0244590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
