AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0172080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0172080 MtrunA17_Chr1g0190341 98.036 560 11 0 1 560 1 560 0.0 1142
Msa0172080 MtrunA17_Chr1g0190371 98.036 560 11 0 1 560 1 560 0.0 1142
Msa0172080 MtrunA17_Chr5g0395701 55.729 576 226 7 5 558 37 605 0.0 663
Msa0172080 MtrunA17_Chr4g0039581 55.185 569 240 8 1 558 3 567 0.0 651
Msa0172080 MtrunA17_Chr2g0309191 47.434 565 265 12 6 558 8 552 2.59e-175 506
Msa0172080 MtrunA17_Chr2g0310081 45.652 552 263 10 20 558 51 578 7.03e-170 494
Msa0172080 MtrunA17_Chr2g0309181 46.196 552 270 10 18 558 50 585 6.59e-169 491
Msa0172080 MtrunA17_Chr4g0074491 44.828 551 273 10 23 558 12 546 1.85e-161 471
Msa0172080 MtrunA17_Chr2g0309171 45.624 537 263 9 35 558 631 1151 3.16e-154 471
Msa0172080 MtrunA17_Chr2g0309171 45.779 533 259 9 35 554 14 529 1.81e-146 451
Msa0172080 MtrunA17_Chr2g0309131 42.804 542 228 8 23 558 20 485 2.03e-141 417
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0172080 AT3G04350.1 64.510 572 186 7 1 560 1 567 0.0 758
Msa0172080 AT5G18490.1 64.825 543 174 7 22 560 24 553 0.0 736
Msa0172080 AT3G04350.2 65.421 535 171 6 35 560 16 545 0.0 726
Msa0172080 AT1G04090.1 54.246 577 242 9 1 560 1 572 0.0 653
Msa0172080 AT5G43950.1 53.578 573 242 9 1 558 1 564 0.0 627
Msa0172080 AT2G44260.1 45.772 544 267 9 23 558 29 552 6.16e-168 488
Msa0172080 AT2G44230.1 45.338 547 263 10 23 558 20 541 6.33e-167 485
Msa0172080 AT2G44260.2 45.677 532 261 9 35 558 71 582 1.77e-162 475
Msa0172080 AT3G01870.1 41.416 565 291 13 11 558 42 583 1.34e-140 419
Msa0172080 AT3G01880.1 41.281 562 290 14 15 558 50 589 3.26e-137 411

Find 188 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCATCAATGACACTTTA+AGG 0.107306 1_4:+57016380 None:intergenic
ACTGCGTGAATGCGTAAATT+TGG 0.163385 1_4:+57015669 None:intergenic
ACACTGAAAACAAAAGAATT+TGG 0.203333 1_4:+57015469 None:intergenic
GTAGTTACTTATAGCTTTCT+TGG 0.219890 1_4:-57015361 Msa0172080:three_prime_UTR
TAAACAAGTTTGAGAAAGTT+TGG 0.235719 1_4:-57017329 Msa0172080:CDS
CTGAGCACAGTGGAGGTAAA+TGG 0.247800 1_4:-57016261 Msa0172080:CDS
TTATTTCCAACAGAGCTTTC+TGG 0.254169 1_4:-57015887 Msa0172080:CDS
CACTTAATTACTCGTTAATA+TGG 0.260129 1_4:-57017107 Msa0172080:CDS
ATTCGATTTGGAGTTTATTA+AGG 0.263278 1_4:-57016230 Msa0172080:CDS
AGCCAATTGTCCTTCTCCTT+TGG 0.307063 1_4:+57015845 None:intergenic
CGTATTGCTTGTAATGGAAT+AGG 0.307831 1_4:-57015181 Msa0172080:three_prime_UTR
GCGAACTCCTATTCCAAGTT+TGG 0.314359 1_4:+57016129 None:intergenic
TCCTTTACCATAAGAATGAT+TGG 0.315404 1_4:+57015753 None:intergenic
TGTCTTGATGAATAAACTAT+TGG 0.322222 1_4:+57016199 None:intergenic
ACAGAAAACCTAACAAATAT+TGG 0.329471 1_4:+57015926 None:intergenic
GATATAATGATGGTGCGTTT+TGG 0.329648 1_4:-57016555 Msa0172080:CDS
CATCGAACTTCTTCAACTTT+CGG 0.340671 1_4:+57016985 None:intergenic
TCTTCAACTTTCGGTTCATC+TGG 0.342527 1_4:+57016994 None:intergenic
TCCGAAAACATACCATTATT+AGG 0.342536 1_4:+57015710 None:intergenic
CAACATTAATTACTTTGTTT+CGG 0.343146 1_4:+57018142 None:intergenic
ATGGGTTAATGCATTCGATT+TGG 0.345620 1_4:-57016242 Msa0172080:CDS
ATGATGAATGTGTTTACTTT+TGG 0.348745 1_4:-57017071 Msa0172080:CDS
TCCTTCTCCTTTGGACCAGT+TGG 0.349557 1_4:+57015854 None:intergenic
GACGGACCAGATATCAAGTT+TGG 0.351841 1_4:+57015563 None:intergenic
ACATGCTTCCAATATTTGTT+AGG 0.353415 1_4:-57015934 Msa0172080:CDS
AATGACACTTTAAGGGTTGC+AGG 0.360391 1_4:+57016388 None:intergenic
CATGCTCTCATTGAGCATTA+CGG 0.360621 1_4:-57016721 Msa0172080:CDS
TTCATTCGTATTGCTTGTAA+TGG 0.364694 1_4:-57015187 Msa0172080:three_prime_UTR
TCATCTTTCTGTCCTAATAA+TGG 0.365027 1_4:-57015722 Msa0172080:three_prime_UTR
GCTGGATCCAATCATTCTTA+TGG 0.369974 1_4:-57015760 Msa0172080:three_prime_UTR
GTTCATCAATGACACTTTAA+GGG 0.377575 1_4:+57016381 None:intergenic
GGATCAGAGTCAAAGAATTC+TGG 0.378539 1_4:+57017933 None:intergenic
GTATCAACTGTATGTATAGA+AGG 0.379258 1_4:-57015408 Msa0172080:three_prime_UTR
TCTGGTGAGGAGGGGCCAAC+TGG 0.379305 1_4:-57015869 Msa0172080:CDS
ATGCTCTCATTGAGCATTAC+GGG 0.380356 1_4:-57016720 Msa0172080:CDS
AAAATTCCAAACTTGATATC+TGG 0.383640 1_4:-57015569 Msa0172080:three_prime_UTR
AACTTTCGGTTCATCTGGAT+TGG 0.384698 1_4:+57016999 None:intergenic
TGGAGATGCACAAATTCTAA+TGG 0.385168 1_4:-57017309 Msa0172080:CDS
CTGTTGGAAATAATTCAAAA+AGG 0.390774 1_4:+57015897 None:intergenic
CTGCGTGAATGCGTAAATTT+GGG 0.393049 1_4:+57015670 None:intergenic
AGAGGTGAAGGAAGAGAAAA+GGG 0.395917 1_4:+57017906 None:intergenic
AAGAGGTGAAGGAAGAGAAA+AGG 0.400057 1_4:+57017905 None:intergenic
TAAGATAATATTATTGCTAA+AGG 0.408489 1_4:-57015231 Msa0172080:three_prime_UTR
TCATGCAGGGACTTACCTTC+AGG 0.415789 1_4:-57016158 Msa0172080:CDS
TGTGGTTGGTAAGAGATGTT+TGG 0.416589 1_4:-57017984 Msa0172080:exon
AAGAGAGTAGAGGGAGGAGG+AGG 0.423853 1_4:-57018081 Msa0172080:five_prime_UTR
AGGGTTGCAGGTCCATTGAA+TGG 0.426014 1_4:+57016400 None:intergenic
TCCTCGCAACGGCTGATCAT+TGG 0.426252 1_4:+57017209 None:intergenic
GTTCATGTAAAACCAGCATT+AGG 0.426763 1_4:-57016460 Msa0172080:CDS
CCGACGGCTTTATAACCCTT+TGG 0.428360 1_4:+57017036 None:intergenic
CTTCAGGGATCATCCAAACT+TGG 0.432488 1_4:-57016142 Msa0172080:CDS
CGGTGAACATGTCGGTGATT+GGG 0.432674 1_4:-57016341 Msa0172080:CDS
TCCAATCATTCTTATGGTAA+AGG 0.432784 1_4:-57015754 Msa0172080:three_prime_UTR
TCGGTGAACATGTCGGTGAT+TGG 0.434338 1_4:-57016342 Msa0172080:CDS
GCTCAATGAGAGCATGAATC+TGG 0.436544 1_4:+57016728 None:intergenic
CATATTAACGAGTAATTAAG+TGG 0.438102 1_4:+57017108 None:intergenic
GATACATGGCGACGATATCT+TGG 0.440980 1_4:+57015426 None:intergenic
GCAACTTCACCGGAGAGCTT+TGG 0.443367 1_4:-57016297 Msa0172080:CDS
ATATTATTGCTAAAGGTTGA+TGG 0.447274 1_4:-57015224 Msa0172080:three_prime_UTR
TTATAACCCTTTGGAGGGTT+AGG 0.448233 1_4:+57017045 None:intergenic
GGATCATCCAAACTTGGAAT+AGG 0.450282 1_4:-57016136 Msa0172080:CDS
GATGGCATGTATTTCTCATC+AGG 0.457793 1_4:+57016679 None:intergenic
TGTATGTATAGAAGGGGTAT+AGG 0.458755 1_4:-57015400 Msa0172080:three_prime_UTR
CCCAAGGGATATTCTTCCAC+CGG 0.460403 1_4:+57017371 None:intergenic
TCCTCACCAGAAAGCTCTGT+TGG 0.461764 1_4:+57015881 None:intergenic
TATTATTGCTAAAGGTTGAT+GGG 0.466225 1_4:-57015223 Msa0172080:three_prime_UTR
AATACACAACCTTGCGATAG+AGG 0.468770 1_4:-57016877 Msa0172080:CDS
CCAAGACAGGAAAATCCATC+TGG 0.469039 1_4:+57017246 None:intergenic
GCATGAATCTGGTTCAGATT+CGG 0.470765 1_4:+57016739 None:intergenic
GAGGACACGTTCTTGTCGCT+CGG 0.471944 1_4:-57017191 Msa0172080:CDS
TGGATCCAGCTCATGAGAAA+TGG 0.475127 1_4:+57015773 None:intergenic
TGAGCACAGTGGAGGTAAAT+GGG 0.475593 1_4:-57016260 Msa0172080:CDS
CTTTACTGATATTGCAATGT+GGG 0.475927 1_4:-57016431 Msa0172080:CDS
GAAGGAAGAGAAAAGGGAAG+TGG 0.478043 1_4:+57017912 None:intergenic
TGCGAGAAATAATCTTAAGA+AGG 0.480833 1_4:-57016509 Msa0172080:CDS
GCAGGCACGTCAGTGGTCAT+TGG 0.482146 1_4:-57015644 Msa0172080:three_prime_UTR
ACGGCTTTATAACCCTTTGG+AGG 0.486012 1_4:+57017039 None:intergenic
TTTCGGTTCATCTGGATTGG+TGG 0.487936 1_4:+57017002 None:intergenic
ATTGTTGCTGCCGAGTATCT+TGG 0.490221 1_4:-57016055 Msa0172080:CDS
GTCCAAAGGAGAAGGACAAT+TGG 0.490950 1_4:-57015847 Msa0172080:CDS
AAACAGAATAAGAGAGTAGA+GGG 0.491921 1_4:-57018090 Msa0172080:five_prime_UTR
CTCACAAACTTCTGTTAGAT+CGG 0.493970 1_4:+57016954 None:intergenic
ACTAGCCATTTCTCATGAGC+TGG 0.497310 1_4:-57015778 Msa0172080:three_prime_UTR
AGGACATGTATATACATTTG+TGG 0.499083 1_4:-57015262 Msa0172080:three_prime_UTR
GGGTTGCAGGTCCATTGAAT+GGG 0.500640 1_4:+57016401 None:intergenic
GCCGGTGGAAGAATATCCCT+TGG 0.503378 1_4:-57017372 Msa0172080:CDS
AATAAGAGAGTAGAGGGAGG+AGG 0.505306 1_4:-57018084 Msa0172080:five_prime_UTR
CTACTTTGATTCTGAACAAG+TGG 0.505519 1_4:-57016809 Msa0172080:CDS
GAGAAATGGCTAGTAGCATA+TGG 0.508226 1_4:+57015787 None:intergenic
CGGTGAAGTTGCTCACGCGA+AGG 0.508371 1_4:+57016308 None:intergenic
CTGATGATGGTGTGAATGTG+TGG 0.509669 1_4:-57015512 Msa0172080:three_prime_UTR
TTGTTCCGAGTCAGAATCCT+TGG 0.510563 1_4:-57017142 Msa0172080:CDS
CATGCTAGCTATCCTCATGC+AGG 0.510869 1_4:-57016172 Msa0172080:CDS
TACGCATTCACGCAGTCGGC+AGG 0.512700 1_4:-57015662 Msa0172080:three_prime_UTR
CCTTGTGGCCATTGTGGAAG+AGG 0.512962 1_4:+57017888 None:intergenic
CCACATTGCAATATCAGTAA+AGG 0.513990 1_4:+57016432 None:intergenic
GGTGGCCGTTGGATCTAGAT+TGG 0.518329 1_4:+57015541 None:intergenic
TATCAACTGTATGTATAGAA+GGG 0.523623 1_4:-57015407 Msa0172080:three_prime_UTR
TTGGTTGCCTAACCCTCCAA+AGG 0.523651 1_4:-57017052 Msa0172080:CDS
GGGGTATAGGAGGTGTGCCT+TGG 0.525597 1_4:-57015387 Msa0172080:three_prime_UTR
AATTCTAATGGAAAGGCACT+AGG 0.529623 1_4:-57017297 Msa0172080:CDS
CATGCAGGGACTTACCTTCA+GGG 0.530671 1_4:-57016157 Msa0172080:CDS
GGTAAAGCTATAGATTATCA+TGG 0.537015 1_4:-57016598 Msa0172080:CDS
AACAGAGCTTTCTGGTGAGG+AGG 0.540070 1_4:-57015879 Msa0172080:CDS
GTATACTGCGGGTAATGCAA+AGG 0.543009 1_4:-57016620 Msa0172080:CDS
ACAGAGCTTTCTGGTGAGGA+GGG 0.543440 1_4:-57015878 Msa0172080:CDS
GTAAAGGCTCCTCCTAATGC+TGG 0.544725 1_4:+57016448 None:intergenic
ATCAGCACATCGGTGGCCGT+TGG 0.546497 1_4:+57015530 None:intergenic
CTATACATACAGTTGATACA+TGG 0.547754 1_4:+57015412 None:intergenic
AGGACACGTTCTTGTCGCTC+GGG 0.549143 1_4:-57017190 Msa0172080:CDS
CCGGTGGAAGAATATCCCTT+GGG 0.549609 1_4:-57017371 Msa0172080:CDS
AGACCTTTGGAGATTCCAGA+TGG 0.551683 1_4:-57017261 Msa0172080:CDS
TTCCTTCACCTCTTCCACAA+TGG 0.552183 1_4:-57017896 Msa0172080:CDS
GACTCCATCACCAAGATACT+CGG 0.556847 1_4:+57016045 None:intergenic
TTACTCGTTAATATGGTGCA+TGG 0.557123 1_4:-57017100 Msa0172080:CDS
CGGCTTTATAACCCTTTGGA+GGG 0.557691 1_4:+57017040 None:intergenic
GGTGAAGTTGCTCACGCGAA+GGG 0.560176 1_4:+57016309 None:intergenic
ATTATTTCTCGCATCTTCAT+CGG 0.561997 1_4:+57016519 None:intergenic
GCCGTTGGATCTAGATTGGA+CGG 0.562927 1_4:+57015545 None:intergenic
TATCATGGCACAAATTTACC+TGG 0.563406 1_4:-57016583 Msa0172080:CDS
CGTGAATCATATACAATGGT+AGG 0.564534 1_4:+57015980 None:intergenic
TCCAACAGAGCTTTCTGGTG+AGG 0.565118 1_4:-57015882 Msa0172080:CDS
ATGTATAGAAGGGGTATAGG+AGG 0.567366 1_4:-57015397 Msa0172080:three_prime_UTR
GCGAGAAATAATCTTAAGAA+GGG 0.567421 1_4:-57016508 Msa0172080:CDS
GACTCGGAACAATCAGCTTG+AGG 0.567833 1_4:+57017153 None:intergenic
GGCACAAATTTACCTGGTGG+AGG 0.569883 1_4:-57016577 Msa0172080:CDS
TTTCTCGCATCTTCATCGGT+AGG 0.570074 1_4:+57016523 None:intergenic
ATGCACAAATTCTAATGGAA+AGG 0.570132 1_4:-57017304 Msa0172080:CDS
AATTTACGCATTCACGCAGT+CGG 0.570803 1_4:-57015666 Msa0172080:three_prime_UTR
TATACTGCGGGTAATGCAAA+GGG 0.571900 1_4:-57016619 Msa0172080:CDS
CATGTAAAACCAGCATTAGG+AGG 0.572269 1_4:-57016457 Msa0172080:CDS
AACATTGAGATGAACAAGAT+CGG 0.572272 1_4:-57016361 Msa0172080:CDS
TGATGATGGTGTGAATGTGT+GGG 0.575230 1_4:-57015511 Msa0172080:three_prime_UTR
CAGAATAAGAGAGTAGAGGG+AGG 0.577200 1_4:-57018087 Msa0172080:five_prime_UTR
TGGTTGCCTAACCCTCCAAA+GGG 0.582899 1_4:-57017051 Msa0172080:CDS
CTTCGCGTGAGCAACTTCAC+CGG 0.582952 1_4:-57016307 Msa0172080:CDS
TCCAATGATCAGCCGTTGCG+AGG 0.585934 1_4:-57017210 Msa0172080:CDS
AAAACAGAATAAGAGAGTAG+AGG 0.588580 1_4:-57018091 Msa0172080:five_prime_UTR
GCCAACTGGTCCAAAGGAGA+AGG 0.588714 1_4:-57015855 Msa0172080:CDS
GTGGCAGTAGTAACCAAGAC+AGG 0.592567 1_4:+57017233 None:intergenic
AAGGTTGTGTATTCCAAACC+TGG 0.594362 1_4:+57016887 None:intergenic
AATCCATCTGGAATCTCCAA+AGG 0.594832 1_4:+57017258 None:intergenic
ACATGCCATCATCGGTGTCG+TGG 0.595421 1_4:-57016666 Msa0172080:CDS
TCCGTCCAATCTAGATCCAA+CGG 0.595498 1_4:-57015546 Msa0172080:three_prime_UTR
CTCATATATTGCAACCAACA+TGG 0.598495 1_4:+57016013 None:intergenic
AAGAGCCAAGGATTCTGACT+CGG 0.598761 1_4:+57017137 None:intergenic
CCTCTTCCACAATGGCCACA+AGG 0.602749 1_4:-57017888 Msa0172080:intron
GGTTGCAATATATGAGAGAG+TGG 0.604682 1_4:-57016006 Msa0172080:CDS
CATTGAGCATTACGGGCCAA+CGG 0.604760 1_4:-57016713 Msa0172080:CDS
CTATAAGTAACTACTATCCA+AGG 0.605011 1_4:+57015370 None:intergenic
TGAGAAATACATGCCATCAT+CGG 0.607689 1_4:-57016674 Msa0172080:CDS
CTAGCTAGAGGTGTATCTGT+CGG 0.607900 1_4:-57016850 Msa0172080:CDS
GGCCACCGATGTGCTGATGA+TGG 0.609192 1_4:-57015525 Msa0172080:three_prime_UTR
TAATGGAATAGGAATGTGCT+TGG 0.609971 1_4:-57015170 Msa0172080:three_prime_UTR
AAGGAGAAGGACAATTGGCT+AGG 0.611868 1_4:-57015842 Msa0172080:CDS
TAGTTTATTCATCAAGACAT+GGG 0.614112 1_4:-57016195 Msa0172080:CDS
CCAAAGGGTTATAAAGCCGT+CGG 0.615266 1_4:-57017036 Msa0172080:CDS
GGAGGGGCCAACTGGTCCAA+AGG 0.615580 1_4:-57015861 Msa0172080:CDS
CCTGGTGGAGGATATAATGA+TGG 0.615594 1_4:-57016565 Msa0172080:CDS
TCAGGATGAAAATATACCGT+TGG 0.617396 1_4:+57016697 None:intergenic
GGTGGTAACTACTATGCCGA+CGG 0.618472 1_4:+57017020 None:intergenic
CAAGTTTGGATGATCCCTGA+AGG 0.618933 1_4:+57016143 None:intergenic
CCTTTACTGATATTGCAATG+TGG 0.624376 1_4:-57016432 Msa0172080:CDS
ATAATACCTTGTGGCCATTG+TGG 0.625787 1_4:+57017882 None:intergenic
CCATCATTATATCCTCCACC+AGG 0.627153 1_4:+57016565 None:intergenic
GTTGCAATATATGAGAGAGT+GGG 0.627285 1_4:-57016005 Msa0172080:CDS
GGCCATTGTGGAAGAGGTGA+AGG 0.627997 1_4:+57017894 None:intergenic
CACCATCATCAGCACATCGG+TGG 0.634242 1_4:+57015523 None:intergenic
GCTGCCGAGTATCTTGGTGA+TGG 0.635810 1_4:-57016049 Msa0172080:CDS
GAAGGGAAACATAGAGAGTG+CGG 0.636222 1_4:-57016491 Msa0172080:CDS
TGAAGGTAAGTCCCTGCATG+AGG 0.636865 1_4:+57016160 None:intergenic
ATAGTTTATTCATCAAGACA+TGG 0.637290 1_4:-57016196 Msa0172080:CDS
ACAAGAACGTGTCCTCGCAA+CGG 0.637737 1_4:+57017198 None:intergenic
ATCAACTGTATGTATAGAAG+GGG 0.638480 1_4:-57015406 Msa0172080:three_prime_UTR
CATGGCACAAATTTACCTGG+TGG 0.638731 1_4:-57016580 Msa0172080:CDS
TCTGTCGGAACATTCTTCTG+TGG 0.649136 1_4:-57016835 Msa0172080:CDS
AACAAGATCGGTGAACATGT+CGG 0.653405 1_4:-57016349 Msa0172080:CDS
CACTTGTTCAGAATCAAAGT+AGG 0.653816 1_4:+57016810 None:intergenic
AGAACGTGAATCATATACAA+TGG 0.654517 1_4:+57015976 None:intergenic
GCTAGCATACCTCTATCGCA+AGG 0.655324 1_4:+57016868 None:intergenic
ATGCTAGCTATCCTCATGCA+GGG 0.655682 1_4:-57016171 Msa0172080:CDS
CAGAGCTTTCTGGTGAGGAG+GGG 0.657357 1_4:-57015877 Msa0172080:CDS
GCAACGGCTGATCATTGGAG+TGG 0.664542 1_4:+57017214 None:intergenic
GAGTCATTACAGAACCATGT+TGG 0.666649 1_4:-57016027 Msa0172080:CDS
TTGCAATATATGAGAGAGTG+GGG 0.676061 1_4:-57016004 Msa0172080:CDS
GATAGAGGTATGCTAGCTAG+AGG 0.685865 1_4:-57016862 Msa0172080:CDS
GCAGTCGGCAGGCACGTCAG+TGG 0.703576 1_4:-57015651 Msa0172080:three_prime_UTR
TCACACCATCATCAGCACAT+CGG 0.709953 1_4:+57015520 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAAAATAATAGAAAAA+GGG + chr1_4:57015432-57015451 None:intergenic 10.0%
!! AAGAAAAAAATAATAGAAAA+AGG + chr1_4:57015433-57015452 None:intergenic 10.0%
!!! TTTTTAACTAACATAAACAT+TGG + chr1_4:57017970-57017989 None:intergenic 15.0%
!! TAAGATAATATTATTGCTAA+AGG - chr1_4:57018047-57018066 Msa0172080:five_prime_UTR 15.0%
!! AAAAATAATAGAAAAAGGGA+AGG + chr1_4:57015428-57015447 None:intergenic 20.0%
!!! ATATTTGTGCTGTTTTTTAT+TGG - chr1_4:57015575-57015594 Msa0172080:three_prime_UTR 20.0%
!!! AATACTATTTGATTTCGTTT+TGG - chr1_4:57015785-57015804 Msa0172080:three_prime_UTR 20.0%
!!! TGCTAAAAGTAATTTTATTC+TGG - chr1_4:57017180-57017199 Msa0172080:CDS 20.0%
!!! TTTGAGTTGATGATTAAAAC+AGG + chr1_4:57015479-57015498 None:intergenic 25.0%
!! TTACTGTGTTCTTTCTATTT+TGG - chr1_4:57015516-57015535 Msa0172080:three_prime_UTR 25.0%
!! GGTATTACTGTGATTAATTT+TGG - chr1_4:57015596-57015615 Msa0172080:three_prime_UTR 25.0%
!!! GTAGTATTTTTTGCAGATAT+TGG - chr1_4:57015624-57015643 Msa0172080:three_prime_UTR 25.0%
!!! TTTGATTTCGTTTTGGTTAT+TGG - chr1_4:57015792-57015811 Msa0172080:three_prime_UTR 25.0%
!!! TATAACTTGTATTTTCCCAA+GGG + chr1_4:57015925-57015944 None:intergenic 25.0%
!!! TTATAACTTGTATTTTCCCA+AGG + chr1_4:57015926-57015945 None:intergenic 25.0%
! TAAACAAGTTTGAGAAAGTT+TGG - chr1_4:57015949-57015968 Msa0172080:CDS 25.0%
!! TTTCACATTTTATAGACCTT+TGG - chr1_4:57016004-57016023 Msa0172080:CDS 25.0%
! CATATTAACGAGTAATTAAG+TGG + chr1_4:57016173-57016192 None:intergenic 25.0%
! CACTTAATTACTCGTTAATA+TGG - chr1_4:57016171-57016190 Msa0172080:CDS 25.0%
!! ATGATGAATGTGTTTACTTT+TGG - chr1_4:57016207-57016226 Msa0172080:CDS 25.0%
!!! ATTCGATTTGGAGTTTATTA+AGG - chr1_4:57017048-57017067 Msa0172080:CDS 25.0%
! TGTCTTGATGAATAAACTAT+TGG + chr1_4:57017082-57017101 None:intergenic 25.0%
! ATAGTTTATTCATCAAGACA+TGG - chr1_4:57017082-57017101 Msa0172080:CDS 25.0%
! TAGTTTATTCATCAAGACAT+GGG - chr1_4:57017083-57017102 Msa0172080:CDS 25.0%
! ACAGAAAACCTAACAAATAT+TGG + chr1_4:57017355-57017374 None:intergenic 25.0%
!!! AATATTTGTTAGGTTTTCTG+TGG - chr1_4:57017354-57017373 Msa0172080:CDS 25.0%
! CTGTTGGAAATAATTCAAAA+AGG + chr1_4:57017384-57017403 None:intergenic 25.0%
!! TCCTAATAATGGTATGTTTT+CGG - chr1_4:57017567-57017586 Msa0172080:intron 25.0%
!!! TATGTTTTCGGATTTTGATT+TGG - chr1_4:57017579-57017598 Msa0172080:intron 25.0%
! AAAATTCCAAACTTGATATC+TGG - chr1_4:57017709-57017728 Msa0172080:intron 25.0%
! ACACTGAAAACAAAAGAATT+TGG + chr1_4:57017812-57017831 None:intergenic 25.0%
! TATCAACTGTATGTATAGAA+GGG - chr1_4:57017871-57017890 Msa0172080:intron 25.0%
! GTATAATTACGCAAAAACTT+AGG - chr1_4:57017996-57018015 Msa0172080:five_prime_UTR 25.0%
! ATATTATTGCTAAAGGTTGA+TGG - chr1_4:57018054-57018073 Msa0172080:five_prime_UTR 25.0%
!! TATTATTGCTAAAGGTTGAT+GGG - chr1_4:57018055-57018074 Msa0172080:five_prime_UTR 25.0%
AAAACAGAATAAGAGAGTAG+AGG - chr1_4:57015187-57015206 Msa0172080:three_prime_UTR 30.0%
AAACAGAATAAGAGAGTAGA+GGG - chr1_4:57015188-57015207 Msa0172080:three_prime_UTR 30.0%
ATGCACAAATTCTAATGGAA+AGG - chr1_4:57015974-57015993 Msa0172080:CDS 30.0%
GTCAAAGAAAAATTCTTTCC+AGG - chr1_4:57016373-57016392 Msa0172080:CDS 30.0%
AGAAAAATTCTTTCCAGGTT+TGG - chr1_4:57016378-57016397 Msa0172080:CDS 30.0%
GGTAAAGCTATAGATTATCA+TGG - chr1_4:57016680-57016699 Msa0172080:CDS 30.0%
! ATTATTTCTCGCATCTTCAT+CGG + chr1_4:57016762-57016781 None:intergenic 30.0%
TGCGAGAAATAATCTTAAGA+AGG - chr1_4:57016769-57016788 Msa0172080:CDS 30.0%
GCGAGAAATAATCTTAAGAA+GGG - chr1_4:57016770-57016789 Msa0172080:CDS 30.0%
CTTTACTGATATTGCAATGT+GGG - chr1_4:57016847-57016866 Msa0172080:CDS 30.0%
GTTCATCAATGACACTTTAA+GGG + chr1_4:57016900-57016919 None:intergenic 30.0%
TGTTCATCAATGACACTTTA+AGG + chr1_4:57016901-57016920 None:intergenic 30.0%
AACATTGAGATGAACAAGAT+CGG - chr1_4:57016917-57016936 Msa0172080:CDS 30.0%
AGAACGTGAATCATATACAA+TGG + chr1_4:57017305-57017324 None:intergenic 30.0%
ACATGCTTCCAATATTTGTT+AGG - chr1_4:57017344-57017363 Msa0172080:CDS 30.0%
TCCAATCATTCTTATGGTAA+AGG - chr1_4:57017524-57017543 Msa0172080:intron 30.0%
TCCTTTACCATAAGAATGAT+TGG + chr1_4:57017528-57017547 None:intergenic 30.0%
TCATCTTTCTGTCCTAATAA+TGG - chr1_4:57017556-57017575 Msa0172080:intron 30.0%
TCCGAAAACATACCATTATT+AGG + chr1_4:57017571-57017590 None:intergenic 30.0%
!!! AGCGAACAGATTTTGATTTT+TGG - chr1_4:57017679-57017698 Msa0172080:intron 30.0%
! CTATACATACAGTTGATACA+TGG + chr1_4:57017869-57017888 None:intergenic 30.0%
GTATCAACTGTATGTATAGA+AGG - chr1_4:57017870-57017889 Msa0172080:intron 30.0%
ATCAACTGTATGTATAGAAG+GGG - chr1_4:57017872-57017891 Msa0172080:intron 30.0%
CTATAAGTAACTACTATCCA+AGG + chr1_4:57017911-57017930 None:intergenic 30.0%
GTAGTTACTTATAGCTTTCT+TGG - chr1_4:57017917-57017936 Msa0172080:CDS 30.0%
AGGACATGTATATACATTTG+TGG - chr1_4:57018016-57018035 Msa0172080:five_prime_UTR 30.0%
TTCATTCGTATTGCTTGTAA+TGG - chr1_4:57018091-57018110 Msa0172080:five_prime_UTR 30.0%
!!! TTGGTTTTGAGTGTTCTTGT+TGG - chr1_4:57015313-57015332 Msa0172080:three_prime_UTR 35.0%
!!! TGGTTTTGAGTGTTCTTGTT+GGG - chr1_4:57015314-57015333 Msa0172080:three_prime_UTR 35.0%
!! AGGTTGATGATAATACCTTG+TGG + chr1_4:57015408-57015427 None:intergenic 35.0%
TGGAGATGCACAAATTCTAA+TGG - chr1_4:57015969-57015988 Msa0172080:CDS 35.0%
!! AATTCTAATGGAAAGGCACT+AGG - chr1_4:57015981-57016000 Msa0172080:CDS 35.0%
TTACTCGTTAATATGGTGCA+TGG - chr1_4:57016178-57016197 Msa0172080:CDS 35.0%
CATCGAACTTCTTCAACTTT+CGG + chr1_4:57016296-57016315 None:intergenic 35.0%
CTCACAAACTTCTGTTAGAT+CGG + chr1_4:57016327-57016346 None:intergenic 35.0%
CACTTGTTCAGAATCAAAGT+AGG + chr1_4:57016471-57016490 None:intergenic 35.0%
CTACTTTGATTCTGAACAAG+TGG - chr1_4:57016469-57016488 Msa0172080:CDS 35.0%
TCAGGATGAAAATATACCGT+TGG + chr1_4:57016584-57016603 None:intergenic 35.0%
TGAGAAATACATGCCATCAT+CGG - chr1_4:57016604-57016623 Msa0172080:CDS 35.0%
! TGGAGCAATTTTGTATACTG+CGG - chr1_4:57016646-57016665 Msa0172080:CDS 35.0%
TATCATGGCACAAATTTACC+TGG - chr1_4:57016695-57016714 Msa0172080:CDS 35.0%
!! GATATAATGATGGTGCGTTT+TGG - chr1_4:57016723-57016742 Msa0172080:CDS 35.0%
GTTCATGTAAAACCAGCATT+AGG - chr1_4:57016818-57016837 Msa0172080:CDS 35.0%
CCACATTGCAATATCAGTAA+AGG + chr1_4:57016849-57016868 None:intergenic 35.0%
CCTTTACTGATATTGCAATG+TGG - chr1_4:57016846-57016865 Msa0172080:CDS 35.0%
! ATGGGTTAATGCATTCGATT+TGG - chr1_4:57017036-57017055 Msa0172080:CDS 35.0%
CTCATATATTGCAACCAACA+TGG + chr1_4:57017268-57017287 None:intergenic 35.0%
GTTGCAATATATGAGAGAGT+GGG - chr1_4:57017273-57017292 Msa0172080:CDS 35.0%
TTGCAATATATGAGAGAGTG+GGG - chr1_4:57017274-57017293 Msa0172080:CDS 35.0%
CGTGAATCATATACAATGGT+AGG + chr1_4:57017301-57017320 None:intergenic 35.0%
TTATTTCCAACAGAGCTTTC+TGG - chr1_4:57017391-57017410 Msa0172080:intron 35.0%
!! TGTTTTCAGTGTGTCATTGA+TGG - chr1_4:57017820-57017839 Msa0172080:intron 35.0%
! TGTATGTATAGAAGGGGTAT+AGG - chr1_4:57017878-57017897 Msa0172080:intron 35.0%
! CGTATTGCTTGTAATGGAAT+AGG - chr1_4:57018097-57018116 Msa0172080:five_prime_UTR 35.0%
TAATGGAATAGGAATGTGCT+TGG - chr1_4:57018108-57018127 Msa0172080:five_prime_UTR 35.0%
!! TGTGGTTGGTAAGAGATGTT+TGG - chr1_4:57015294-57015313 Msa0172080:three_prime_UTR 40.0%
GGATCAGAGTCAAAGAATTC+TGG + chr1_4:57015348-57015367 None:intergenic 40.0%
AGAGGTGAAGGAAGAGAAAA+GGG + chr1_4:57015375-57015394 None:intergenic 40.0%
AAGAGGTGAAGGAAGAGAAA+AGG + chr1_4:57015376-57015395 None:intergenic 40.0%
ATAATACCTTGTGGCCATTG+TGG + chr1_4:57015399-57015418 None:intergenic 40.0%
! AATCCATCTGGAATCTCCAA+AGG + chr1_4:57016023-57016042 None:intergenic 40.0%
!! AAGTGGCTTTTTAAGAGCCA+AGG + chr1_4:57016156-57016175 None:intergenic 40.0%
! TTATAACCCTTTGGAGGGTT+AGG + chr1_4:57016236-57016255 None:intergenic 40.0%
AACTTTCGGTTCATCTGGAT+TGG + chr1_4:57016282-57016301 None:intergenic 40.0%
TCTTCAACTTTCGGTTCATC+TGG + chr1_4:57016287-57016306 None:intergenic 40.0%
AAGGTTGTGTATTCCAAACC+TGG + chr1_4:57016394-57016413 None:intergenic 40.0%
AATACACAACCTTGCGATAG+AGG - chr1_4:57016401-57016420 Msa0172080:CDS 40.0%
! GCATGAATCTGGTTCAGATT+CGG + chr1_4:57016542-57016561 None:intergenic 40.0%
CATGCTCTCATTGAGCATTA+CGG - chr1_4:57016557-57016576 Msa0172080:CDS 40.0%
ATGCTCTCATTGAGCATTAC+GGG - chr1_4:57016558-57016577 Msa0172080:CDS 40.0%
GATGGCATGTATTTCTCATC+AGG + chr1_4:57016602-57016621 None:intergenic 40.0%
!!! GTGTCGTGGTTTTTCAAGAA+TGG - chr1_4:57016626-57016645 Msa0172080:CDS 40.0%
! GGAGCAATTTTGTATACTGC+GGG - chr1_4:57016647-57016666 Msa0172080:CDS 40.0%
TATACTGCGGGTAATGCAAA+GGG - chr1_4:57016659-57016678 Msa0172080:CDS 40.0%
CATGTAAAACCAGCATTAGG+AGG - chr1_4:57016821-57016840 Msa0172080:CDS 40.0%
!!! TGGGTTTTTTGCCCATTCAA+TGG - chr1_4:57016866-57016885 Msa0172080:CDS 40.0%
! AATGACACTTTAAGGGTTGC+AGG + chr1_4:57016893-57016912 None:intergenic 40.0%
AACAAGATCGGTGAACATGT+CGG - chr1_4:57016929-57016948 Msa0172080:CDS 40.0%
AAAAACAGACCAAAGCTCTC+CGG + chr1_4:57016993-57017012 None:intergenic 40.0%
!!! GTTTTTTTCTCTGAGCACAG+TGG - chr1_4:57017007-57017026 Msa0172080:CDS 40.0%
GGATCATCCAAACTTGGAAT+AGG - chr1_4:57017142-57017161 Msa0172080:CDS 40.0%
GAGTCATTACAGAACCATGT+TGG - chr1_4:57017251-57017270 Msa0172080:CDS 40.0%
GGTTGCAATATATGAGAGAG+TGG - chr1_4:57017272-57017291 Msa0172080:CDS 40.0%
GAGAAATGGCTAGTAGCATA+TGG + chr1_4:57017494-57017513 None:intergenic 40.0%
GCTGGATCCAATCATTCTTA+TGG - chr1_4:57017518-57017537 Msa0172080:intron 40.0%
CTGCGTGAATGCGTAAATTT+GGG + chr1_4:57017611-57017630 None:intergenic 40.0%
ACTGCGTGAATGCGTAAATT+TGG + chr1_4:57017612-57017631 None:intergenic 40.0%
AATTTACGCATTCACGCAGT+CGG - chr1_4:57017612-57017631 Msa0172080:intron 40.0%
!! TGATGATGGTGTGAATGTGT+GGG - chr1_4:57017767-57017786 Msa0172080:intron 40.0%
! ATGTATAGAAGGGGTATAGG+AGG - chr1_4:57017881-57017900 Msa0172080:intron 40.0%
CAGAATAAGAGAGTAGAGGG+AGG - chr1_4:57015191-57015210 Msa0172080:three_prime_UTR 45.0%
AATAAGAGAGTAGAGGGAGG+AGG - chr1_4:57015194-57015213 Msa0172080:three_prime_UTR 45.0%
GAGAGAGAGAGAGAGAAGAA+GGG + chr1_4:57015269-57015288 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAAGA+AGG + chr1_4:57015270-57015289 None:intergenic 45.0%
! CTCTCTCTCTCTCTCTTTTG+TGG - chr1_4:57015276-57015295 Msa0172080:three_prime_UTR 45.0%
! CTCTCTCTCTCTTTTGTGGT+TGG - chr1_4:57015280-57015299 Msa0172080:three_prime_UTR 45.0%
GAAGGAAGAGAAAAGGGAAG+TGG + chr1_4:57015369-57015388 None:intergenic 45.0%
TTCCTTCACCTCTTCCACAA+TGG - chr1_4:57015382-57015401 Msa0172080:three_prime_UTR 45.0%
AGCTTGTGAGTGATCTACTC+AGG - chr1_4:57015873-57015892 Msa0172080:CDS 45.0%
TTGTGAGTGATCTACTCAGG+TGG - chr1_4:57015876-57015895 Msa0172080:CDS 45.0%
! AGACCTTTGGAGATTCCAGA+TGG - chr1_4:57016017-57016036 Msa0172080:CDS 45.0%
CCAAGACAGGAAAATCCATC+TGG + chr1_4:57016035-57016054 None:intergenic 45.0%
!! CCAGATGGATTTTCCTGTCT+TGG - chr1_4:57016032-57016051 Msa0172080:CDS 45.0%
TTGTTCCGAGTCAGAATCCT+TGG - chr1_4:57016136-57016155 Msa0172080:CDS 45.0%
AAGAGCCAAGGATTCTGACT+CGG + chr1_4:57016144-57016163 None:intergenic 45.0%
! CGGCTTTATAACCCTTTGGA+GGG + chr1_4:57016241-57016260 None:intergenic 45.0%
! ACGGCTTTATAACCCTTTGG+AGG + chr1_4:57016242-57016261 None:intergenic 45.0%
CCAAAGGGTTATAAAGCCGT+CGG - chr1_4:57016242-57016261 Msa0172080:CDS 45.0%
! TTTCGGTTCATCTGGATTGG+TGG + chr1_4:57016279-57016298 None:intergenic 45.0%
! GATAGAGGTATGCTAGCTAG+AGG - chr1_4:57016416-57016435 Msa0172080:CDS 45.0%
! CTAGCTAGAGGTGTATCTGT+CGG - chr1_4:57016428-57016447 Msa0172080:CDS 45.0%
TCTGTCGGAACATTCTTCTG+TGG - chr1_4:57016443-57016462 Msa0172080:CDS 45.0%
! GCTCAATGAGAGCATGAATC+TGG + chr1_4:57016553-57016572 None:intergenic 45.0%
AAAAACCACGACACCGATGA+TGG + chr1_4:57016620-57016639 None:intergenic 45.0%
GTATACTGCGGGTAATGCAA+AGG - chr1_4:57016658-57016677 Msa0172080:CDS 45.0%
CATGGCACAAATTTACCTGG+TGG - chr1_4:57016698-57016717 Msa0172080:CDS 45.0%
CCATCATTATATCCTCCACC+AGG + chr1_4:57016716-57016735 None:intergenic 45.0%
CCTGGTGGAGGATATAATGA+TGG - chr1_4:57016713-57016732 Msa0172080:CDS 45.0%
TTTCTCGCATCTTCATCGGT+AGG + chr1_4:57016758-57016777 None:intergenic 45.0%
GAAGGGAAACATAGAGAGTG+CGG - chr1_4:57016787-57016806 Msa0172080:CDS 45.0%
! TTTTTCTCTGAGCACAGTGG+AGG - chr1_4:57017010-57017029 Msa0172080:CDS 45.0%
TGAGCACAGTGGAGGTAAAT+GGG - chr1_4:57017018-57017037 Msa0172080:CDS 45.0%
ATGCTAGCTATCCTCATGCA+GGG - chr1_4:57017107-57017126 Msa0172080:CDS 45.0%
CAAGTTTGGATGATCCCTGA+AGG + chr1_4:57017138-57017157 None:intergenic 45.0%
CTTCAGGGATCATCCAAACT+TGG - chr1_4:57017136-57017155 Msa0172080:CDS 45.0%
GCGAACTCCTATTCCAAGTT+TGG + chr1_4:57017152-57017171 None:intergenic 45.0%
ATTGTTGCTGCCGAGTATCT+TGG - chr1_4:57017223-57017242 Msa0172080:CDS 45.0%
GACTCCATCACCAAGATACT+CGG + chr1_4:57017236-57017255 None:intergenic 45.0%
GTCCAAAGGAGAAGGACAAT+TGG - chr1_4:57017431-57017450 Msa0172080:intron 45.0%
AGCCAATTGTCCTTCTCCTT+TGG + chr1_4:57017436-57017455 None:intergenic 45.0%
AAGGAGAAGGACAATTGGCT+AGG - chr1_4:57017436-57017455 Msa0172080:intron 45.0%
ACTAGCCATTTCTCATGAGC+TGG - chr1_4:57017500-57017519 Msa0172080:intron 45.0%
TGGATCCAGCTCATGAGAAA+TGG + chr1_4:57017508-57017527 None:intergenic 45.0%
GACGGACCAGATATCAAGTT+TGG + chr1_4:57017718-57017737 None:intergenic 45.0%
TCCGTCCAATCTAGATCCAA+CGG - chr1_4:57017732-57017751 Msa0172080:intron 45.0%
TCACACCATCATCAGCACAT+CGG + chr1_4:57017761-57017780 None:intergenic 45.0%
!! CTGATGATGGTGTGAATGTG+TGG - chr1_4:57017766-57017785 Msa0172080:intron 45.0%
GATACATGGCGACGATATCT+TGG + chr1_4:57017855-57017874 None:intergenic 45.0%
TGAGTGATCTACTCAGGTGG+TGG - chr1_4:57015879-57015898 Msa0172080:CDS 50.0%
!! TACTCAGGTGGTGGTTTTGC+CGG - chr1_4:57015888-57015907 Msa0172080:CDS 50.0%
CCCAAGGGATATTCTTCCAC+CGG + chr1_4:57015910-57015929 None:intergenic 50.0%
CCGGTGGAAGAATATCCCTT+GGG - chr1_4:57015907-57015926 Msa0172080:CDS 50.0%
GTGGCAGTAGTAACCAAGAC+AGG + chr1_4:57016048-57016067 None:intergenic 50.0%
ACAAGAACGTGTCCTCGCAA+CGG + chr1_4:57016083-57016102 None:intergenic 50.0%
GACTCGGAACAATCAGCTTG+AGG + chr1_4:57016128-57016147 None:intergenic 50.0%
TTGGTTGCCTAACCCTCCAA+AGG - chr1_4:57016226-57016245 Msa0172080:CDS 50.0%
TGGTTGCCTAACCCTCCAAA+GGG - chr1_4:57016227-57016246 Msa0172080:CDS 50.0%
! CCGACGGCTTTATAACCCTT+TGG + chr1_4:57016245-57016264 None:intergenic 50.0%
GGTGGTAACTACTATGCCGA+CGG + chr1_4:57016261-57016280 None:intergenic 50.0%
GCTAGCATACCTCTATCGCA+AGG + chr1_4:57016413-57016432 None:intergenic 50.0%
CATTGAGCATTACGGGCCAA+CGG - chr1_4:57016565-57016584 Msa0172080:CDS 50.0%
GGCACAAATTTACCTGGTGG+AGG - chr1_4:57016701-57016720 Msa0172080:CDS 50.0%
GTAAAGGCTCCTCCTAATGC+TGG + chr1_4:57016833-57016852 None:intergenic 50.0%
GGGTTGCAGGTCCATTGAAT+GGG + chr1_4:57016880-57016899 None:intergenic 50.0%
AGGGTTGCAGGTCCATTGAA+TGG + chr1_4:57016881-57016900 None:intergenic 50.0%
TCGGTGAACATGTCGGTGAT+TGG - chr1_4:57016936-57016955 Msa0172080:CDS 50.0%
CGGTGAACATGTCGGTGATT+GGG - chr1_4:57016937-57016956 Msa0172080:CDS 50.0%
CTGAGCACAGTGGAGGTAAA+TGG - chr1_4:57017017-57017036 Msa0172080:CDS 50.0%
CATGCTAGCTATCCTCATGC+AGG - chr1_4:57017106-57017125 Msa0172080:CDS 50.0%
TGAAGGTAAGTCCCTGCATG+AGG + chr1_4:57017121-57017140 None:intergenic 50.0%
TCATGCAGGGACTTACCTTC+AGG - chr1_4:57017120-57017139 Msa0172080:CDS 50.0%
CATGCAGGGACTTACCTTCA+GGG - chr1_4:57017121-57017140 Msa0172080:CDS 50.0%
! TCCAACAGAGCTTTCTGGTG+AGG - chr1_4:57017396-57017415 Msa0172080:intron 50.0%
TCCTCACCAGAAAGCTCTGT+TGG + chr1_4:57017400-57017419 None:intergenic 50.0%
! AACAGAGCTTTCTGGTGAGG+AGG - chr1_4:57017399-57017418 Msa0172080:intron 50.0%
! ACAGAGCTTTCTGGTGAGGA+GGG - chr1_4:57017400-57017419 Msa0172080:intron 50.0%
TCCTTCTCCTTTGGACCAGT+TGG + chr1_4:57017427-57017446 None:intergenic 50.0%
GCCGTTGGATCTAGATTGGA+CGG + chr1_4:57017736-57017755 None:intergenic 50.0%
AAGAGAGTAGAGGGAGGAGG+AGG - chr1_4:57015197-57015216 Msa0172080:three_prime_UTR 55.0%
GGCCATTGTGGAAGAGGTGA+AGG + chr1_4:57015387-57015406 None:intergenic 55.0%
CCTTGTGGCCATTGTGGAAG+AGG + chr1_4:57015393-57015412 None:intergenic 55.0%
CCTCTTCCACAATGGCCACA+AGG - chr1_4:57015390-57015409 Msa0172080:three_prime_UTR 55.0%
GCCGGTGGAAGAATATCCCT+TGG - chr1_4:57015906-57015925 Msa0172080:CDS 55.0%
GCAACGGCTGATCATTGGAG+TGG + chr1_4:57016067-57016086 None:intergenic 55.0%
TCCAATGATCAGCCGTTGCG+AGG - chr1_4:57016068-57016087 Msa0172080:CDS 55.0%
TCCTCGCAACGGCTGATCAT+TGG + chr1_4:57016072-57016091 None:intergenic 55.0%
GAGGACACGTTCTTGTCGCT+CGG - chr1_4:57016087-57016106 Msa0172080:CDS 55.0%
AGGACACGTTCTTGTCGCTC+GGG - chr1_4:57016088-57016107 Msa0172080:CDS 55.0%
!! ACATGCCATCATCGGTGTCG+TGG - chr1_4:57016612-57016631 Msa0172080:CDS 55.0%
GGTGAAGTTGCTCACGCGAA+GGG + chr1_4:57016972-57016991 None:intergenic 55.0%
CTTCGCGTGAGCAACTTCAC+CGG - chr1_4:57016971-57016990 Msa0172080:CDS 55.0%
GCAACTTCACCGGAGAGCTT+TGG - chr1_4:57016981-57017000 Msa0172080:CDS 55.0%
GCTGCCGAGTATCTTGGTGA+TGG - chr1_4:57017229-57017248 Msa0172080:CDS 55.0%
! CAGAGCTTTCTGGTGAGGAG+GGG - chr1_4:57017401-57017420 Msa0172080:intron 55.0%
GCCAACTGGTCCAAAGGAGA+AGG - chr1_4:57017423-57017442 Msa0172080:intron 55.0%
GGTGGCCGTTGGATCTAGAT+TGG + chr1_4:57017740-57017759 None:intergenic 55.0%
CACCATCATCAGCACATCGG+TGG + chr1_4:57017758-57017777 None:intergenic 55.0%
!! TCAGGTGGTGGTTTTGCCGG+TGG - chr1_4:57015891-57015910 Msa0172080:CDS 60.0%
CGGTGAAGTTGCTCACGCGA+AGG + chr1_4:57016973-57016992 None:intergenic 60.0%
TACGCATTCACGCAGTCGGC+AGG - chr1_4:57017616-57017635 Msa0172080:intron 60.0%
GCAGGCACGTCAGTGGTCAT+TGG - chr1_4:57017634-57017653 Msa0172080:intron 60.0%
ATCAGCACATCGGTGGCCGT+TGG + chr1_4:57017751-57017770 None:intergenic 60.0%
! GGCCACCGATGTGCTGATGA+TGG - chr1_4:57017753-57017772 Msa0172080:intron 60.0%
! GGGGTATAGGAGGTGTGCCT+TGG - chr1_4:57017891-57017910 Msa0172080:CDS 60.0%
TCTGGTGAGGAGGGGCCAAC+TGG - chr1_4:57017409-57017428 Msa0172080:intron 65.0%
GGAGGGGCCAACTGGTCCAA+AGG - chr1_4:57017417-57017436 Msa0172080:intron 65.0%
GCAGTCGGCAGGCACGTCAG+TGG - chr1_4:57017627-57017646 Msa0172080:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 57015137 57018163 57015137 ID=Msa0172080;Name=Msa0172080
chr1_4 mRNA 57015137 57018163 57015137 ID=Msa0172080-mRNA-1;Parent=Msa0172080;Name=Msa0172080-mRNA-1;_AED=0.01;_eAED=0.01;_QI=172|1|1|1|1|1|2|689|560
chr1_4 exon 57015137 57017405 57015137 ID=Msa0172080-mRNA-1:exon:17399;Parent=Msa0172080-mRNA-1
chr1_4 exon 57017889 57018163 57017889 ID=Msa0172080-mRNA-1:exon:17398;Parent=Msa0172080-mRNA-1
chr1_4 five_prime_UTR 57017992 57018163 57017992 ID=Msa0172080-mRNA-1:five_prime_utr;Parent=Msa0172080-mRNA-1
chr1_4 CDS 57017889 57017991 57017889 ID=Msa0172080-mRNA-1:cds;Parent=Msa0172080-mRNA-1
chr1_4 CDS 57015826 57017405 57015826 ID=Msa0172080-mRNA-1:cds;Parent=Msa0172080-mRNA-1
chr1_4 three_prime_UTR 57015137 57015825 57015137 ID=Msa0172080-mRNA-1:three_prime_utr;Parent=Msa0172080-mRNA-1
Gene Sequence

>Msa0172080

ATGTTTGGTTTTGAGTGTTCTTGTTGGGATAGTTTGCCAGAATTCTTTGACTCTGATCCACTTCCCTTTTCTCTTCCTTCACCTCTTCCACAATGGCCACAAGGTGGTGGTTTTGCCGGTGGAAGAATATCCCTTGGGAAAATACAAGTTATAAAAGTAAACAAGTTTGAGAAAGTTTGGAGATGCACAAATTCTAATGGAAAGGCACTAGGTTTCACATTTTATAGACCTTTGGAGATTCCAGATGGATTTTCCTGTCTTGGTTACTACTGCCACTCCAATGATCAGCCGTTGCGAGGACACGTTCTTGTCGCTCGGGAGACTACTTACGAACCTCAAGCTGATTGTTCCGAGTCAGAATCCTTGGCTCTTAAAAAGCCACTTAATTACTCGTTAATATGGTGCATGGACTCACATGATGAATGTGTTTACTTTTGGTTGCCTAACCCTCCAAAGGGTTATAAAGCCGTCGGCATAGTAGTTACCACCAATCCAGATGAACCGAAAGTTGAAGAAGTTCGATGCGTGCGAACCGATCTAACAGAAGTTTGTGAGACATCTGATCTCTTACTAACAATAAAGTCAAAGAAAAATTCTTTCCAGGTTTGGAATACACAACCTTGCGATAGAGGTATGCTAGCTAGAGGTGTATCTGTCGGAACATTCTTCTGTGGCACCTACTTTGATTCTGAACAAGTGGTTGATGTTGTGTGTTTGAAGAATCTTGATTCTTCGTTGCACGCAATGCCGAATCTGAACCAGATTCATGCTCTCATTGAGCATTACGGGCCAACGGTATATTTTCATCCTGATGAGAAATACATGCCATCATCGGTGTCGTGGTTTTTCAAGAATGGAGCAATTTTGTATACTGCGGGTAATGCAAAGGGTAAAGCTATAGATTATCATGGCACAAATTTACCTGGTGGAGGATATAATGATGGTGCGTTTTGGATTGATTTGCCTACCGATGAAGATGCGAGAAATAATCTTAAGAAGGGAAACATAGAGAGTGCGGAACTCTATGTTCATGTAAAACCAGCATTAGGAGGAGCCTTTACTGATATTGCAATGTGGGTTTTTTGCCCATTCAATGGACCTGCAACCCTTAAAGTGTCATTGATGAACATTGAGATGAACAAGATCGGTGAACATGTCGGTGATTGGGAGCACTTCACCCTTCGCGTGAGCAACTTCACCGGAGAGCTTTGGTCTGTTTTTTTCTCTGAGCACAGTGGAGGTAAATGGGTTAATGCATTCGATTTGGAGTTTATTAAGGAGAATAAACCAATAGTTTATTCATCAAGACATGGGCATGCTAGCTATCCTCATGCAGGGACTTACCTTCAGGGATCATCCAAACTTGGAATAGGAGTTCGCAACGATGCTGCTAAAAGTAATTTTATTCTGGATTCGAGCTTTAGATACAAGATTGTTGCTGCCGAGTATCTTGGTGATGGAGTCATTACAGAACCATGTTGGTTGCAATATATGAGAGAGTGGGGTCCTACCATTGTATATGATTCACGTTCTGAAATAGAGAAGATAATAGACATGCTTCCAATATTTGTTAGGTTTTCTGTGGAGAACCTTTTTGAATTATTTCCAACAGAGCTTTCTGGTGAGGAGGGGCCAACTGGTCCAAAGGAGAAGGACAATTGGCTAGGTGATGAATATTGCTAG

Protein sequence

>Msa0172080

MFGFECSCWDSLPEFFDSDPLPFSLPSPLPQWPQGGGFAGGRISLGKIQVIKVNKFEKVWRCTNSNGKALGFTFYRPLEIPDGFSCLGYYCHSNDQPLRGHVLVARETTYEPQADCSESESLALKKPLNYSLIWCMDSHDECVYFWLPNPPKGYKAVGIVVTTNPDEPKVEEVRCVRTDLTEVCETSDLLLTIKSKKNSFQVWNTQPCDRGMLARGVSVGTFFCGTYFDSEQVVDVVCLKNLDSSLHAMPNLNQIHALIEHYGPTVYFHPDEKYMPSSVSWFFKNGAILYTAGNAKGKAIDYHGTNLPGGGYNDGAFWIDLPTDEDARNNLKKGNIESAELYVHVKPALGGAFTDIAMWVFCPFNGPATLKVSLMNIEMNKIGEHVGDWEHFTLRVSNFTGELWSVFFSEHSGGKWVNAFDLEFIKENKPIVYSSRHGHASYPHAGTYLQGSSKLGIGVRNDAAKSNFILDSSFRYKIVAAEYLGDGVITEPCWLQYMREWGPTIVYDSRSEIEKIIDMLPIFVRFSVENLFELFPTELSGEEGPTGPKEKDNWLGDEYC*