Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245120 | XP_003595135.2 | 92.715 | 302 | 22 | 0 | 1 | 302 | 1 | 302 | 0.0 | 513 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245120 | sp|Q9SZI6|GAT22_ARATH | 33.673 | 294 | 147 | 9 | 49 | 296 | 61 | 352 | 1.05e-28 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245120 | A0A396J909 | 92.715 | 302 | 22 | 0 | 1 | 302 | 1 | 302 | 0.0 | 513 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0245120 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0202160 | Msa0245120 | 0.842908 | 1.940328e-58 | -8.615850e-47 |
| Msa0245120 | Msa0321840 | 0.858960 | 5.752783e-63 | -8.615850e-47 |
| Msa0245120 | Msa0544780 | 0.810318 | 1.223716e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245120 | MtrunA17_Chr2g0299081 | 92.715 | 302 | 22 | 0 | 1 | 302 | 1 | 302 | 0.0 | 513 |
| Msa0245120 | MtrunA17_Chr4g0071301 | 45.015 | 331 | 133 | 17 | 8 | 296 | 10 | 333 | 1.80e-51 | 172 |
| Msa0245120 | MtrunA17_Chr1g0151461 | 43.972 | 141 | 50 | 3 | 115 | 230 | 108 | 244 | 3.68e-27 | 107 |
| Msa0245120 | MtrunA17_Chr4g0068031 | 62.000 | 50 | 19 | 0 | 164 | 213 | 25 | 74 | 4.11e-17 | 76.6 |
| Msa0245120 | MtrunA17_Chr7g0271861 | 75.000 | 36 | 9 | 0 | 169 | 204 | 22 | 57 | 5.01e-14 | 67.8 |
| Msa0245120 | MtrunA17_Chr5g0404131 | 44.706 | 85 | 41 | 1 | 127 | 205 | 144 | 228 | 3.60e-13 | 68.9 |
| Msa0245120 | MtrunA17_Chr1g0213161 | 64.865 | 37 | 13 | 0 | 168 | 204 | 151 | 187 | 1.13e-11 | 63.5 |
| Msa0245120 | MtrunA17_Chr8g0373231 | 65.789 | 38 | 13 | 0 | 168 | 205 | 124 | 161 | 6.49e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245120 | AT4G26150.1 | 33.673 | 294 | 147 | 9 | 49 | 296 | 61 | 352 | 1.06e-29 | 115 |
| Msa0245120 | AT5G56860.1 | 35.323 | 201 | 81 | 9 | 51 | 202 | 63 | 263 | 5.96e-20 | 89.7 |
| Msa0245120 | AT5G49300.1 | 62.500 | 56 | 20 | 1 | 152 | 206 | 18 | 73 | 1.15e-17 | 78.6 |
| Msa0245120 | AT5G26930.1 | 73.171 | 41 | 11 | 0 | 166 | 206 | 23 | 63 | 3.35e-17 | 76.6 |
| Msa0245120 | AT3G06740.1 | 63.830 | 47 | 17 | 0 | 161 | 207 | 33 | 79 | 8.69e-15 | 70.9 |
| Msa0245120 | AT3G16870.1 | 68.293 | 41 | 13 | 0 | 166 | 206 | 39 | 79 | 3.08e-14 | 70.5 |
| Msa0245120 | AT4G16141.1 | 65.854 | 41 | 14 | 0 | 166 | 206 | 34 | 74 | 6.68e-14 | 69.7 |
| Msa0245120 | AT1G08010.2 | 54.717 | 53 | 24 | 0 | 152 | 204 | 203 | 255 | 1.04e-12 | 67.8 |
| Msa0245120 | AT1G08010.1 | 54.717 | 53 | 24 | 0 | 152 | 204 | 203 | 255 | 1.04e-12 | 67.8 |
| Msa0245120 | AT1G08010.3 | 54.717 | 53 | 24 | 0 | 152 | 204 | 203 | 255 | 1.04e-12 | 67.8 |
| Msa0245120 | AT1G08000.2 | 40.698 | 86 | 47 | 2 | 120 | 204 | 171 | 253 | 1.74e-12 | 67.0 |
| Msa0245120 | AT1G08000.1 | 40.698 | 86 | 47 | 2 | 120 | 204 | 171 | 253 | 1.74e-12 | 67.0 |
| Msa0245120 | AT3G50870.1 | 61.538 | 52 | 19 | 1 | 168 | 219 | 151 | 201 | 1.87e-12 | 67.0 |
| Msa0245120 | AT4G36620.1 | 59.184 | 49 | 20 | 0 | 164 | 212 | 70 | 118 | 4.80e-12 | 64.7 |
| Msa0245120 | AT2G18380.1 | 57.895 | 57 | 21 | 2 | 169 | 222 | 92 | 148 | 6.26e-12 | 64.3 |
| Msa0245120 | AT3G60530.1 | 31.481 | 108 | 68 | 2 | 136 | 242 | 130 | 232 | 5.52e-11 | 62.0 |
| Msa0245120 | AT2G45050.1 | 36.250 | 80 | 50 | 1 | 157 | 235 | 167 | 246 | 8.67e-11 | 61.6 |
Find 73 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATCTTCTGGCTTGCTTAA+TGG | 0.177034 | 2_2:-24331286 | Msa0245120:CDS |
| AGATCAATGTTTGGGGAAAT+AGG | 0.218766 | 2_2:-24331180 | Msa0245120:three_prime_UTR |
| TATTTAAAATAAAGTTCTTT+AGG | 0.220302 | 2_2:-24331156 | Msa0245120:three_prime_UTR |
| ATCTTGTTTGATCTTGATTT+TGG | 0.229038 | 2_2:+24332895 | None:intergenic |
| CTACTCATGGCTTTATCTTC+TGG | 0.251698 | 2_2:-24331298 | Msa0245120:CDS |
| TTTCAAACAACAACACTGTT+AGG | 0.256322 | 2_2:-24332351 | Msa0245120:CDS |
| TTAATCATTCTCTTCTTTGA+TGG | 0.270861 | 2_2:+24332478 | None:intergenic |
| TCCTCAGTTCTTACTAGATT+TGG | 0.275505 | 2_2:+24332391 | None:intergenic |
| ATCAAACAAGATCTTATTCT+TGG | 0.275784 | 2_2:-24332884 | Msa0245120:CDS |
| ATTTAAAATAAAGTTCTTTA+GGG | 0.311024 | 2_2:-24331155 | Msa0245120:three_prime_UTR |
| GGATCATCAAGAAGTGAAAA+AGG | 0.339108 | 2_2:-24332575 | Msa0245120:CDS |
| AACTTCTTTCCCTTCACATA+TGG | 0.359398 | 2_2:+24331487 | None:intergenic |
| AGTGACAATGAAGTATTAGA+TGG | 0.364168 | 2_2:-24331122 | Msa0245120:three_prime_UTR |
| TTTGTATGAGATCAATGTTT+GGG | 0.369528 | 2_2:-24331188 | Msa0245120:three_prime_UTR |
| CATCTTGAGGGAAAACTTGA+TGG | 0.376163 | 2_2:+24331338 | None:intergenic |
| ACCATTTGCAGCTGCTGCAA+GGG | 0.392222 | 2_2:+24331534 | None:intergenic |
| ATTTGTATGAGATCAATGTT+TGG | 0.405757 | 2_2:-24331189 | Msa0245120:three_prime_UTR |
| GCCCTTGCAGCAGCTGCAAA+TGG | 0.406328 | 2_2:-24331535 | Msa0245120:CDS |
| CTCTGGAGAAGTGGACCAAC+TGG | 0.407869 | 2_2:-24332295 | Msa0245120:CDS |
| GAAAGAAGTTGCAAGTCAAT+AGG | 0.415316 | 2_2:-24331474 | Msa0245120:CDS |
| TTGTAACTTCTGGTGAATCA+TGG | 0.418749 | 2_2:-24332597 | Msa0245120:CDS |
| GATCAATGTTTGGGGAAATA+GGG | 0.420396 | 2_2:-24331179 | Msa0245120:three_prime_UTR |
| CACCATTTGCAGCTGCTGCA+AGG | 0.426560 | 2_2:+24331533 | None:intergenic |
| CAAAGAAGAGAATGATTAAG+AGG | 0.444414 | 2_2:-24332474 | Msa0245120:CDS |
| TCAAACAAGATCTTATTCTT+GGG | 0.457205 | 2_2:-24332883 | Msa0245120:CDS |
| TTCAAACAACAACACTGTTA+GGG | 0.464863 | 2_2:-24332350 | Msa0245120:CDS |
| AATTCAATAAAATTATTACA+AGG | 0.465976 | 2_2:-24331002 | Msa0245120:three_prime_UTR |
| GAGAATGATTAAGAGGATGA+TGG | 0.470043 | 2_2:-24332467 | Msa0245120:CDS |
| TAGAGAAGAAGATGAAGAAG+TGG | 0.474019 | 2_2:+24332938 | None:intergenic |
| TTGAAGATTTGATAACAAGT+TGG | 0.482551 | 2_2:-24331378 | Msa0245120:CDS |
| GAGGATGATGGAAGATCAAA+GGG | 0.487515 | 2_2:-24332455 | Msa0245120:CDS |
| TGTAACTTCTGGTGAATCAT+GGG | 0.493931 | 2_2:-24332596 | Msa0245120:CDS |
| GATGCAGAATAACGATAAGT+TGG | 0.493962 | 2_2:+24333035 | None:intergenic |
| TTGGTCCACTTCTCCAGAGA+GGG | 0.496789 | 2_2:+24332299 | None:intergenic |
| TTCAATAAAATTATTACAAG+GGG | 0.498539 | 2_2:-24331000 | Msa0245120:three_prime_UTR |
| ATAACGATAAGTTGGTATCA+TGG | 0.500444 | 2_2:+24333043 | None:intergenic |
| CTACACCATCACTTAGTATG+TGG | 0.505698 | 2_2:+24332853 | None:intergenic |
| AACAAGTTGGAGCAACAACT+TGG | 0.506773 | 2_2:-24331365 | Msa0245120:CDS |
| ACACAACTAAGACCCCTCTC+TGG | 0.508622 | 2_2:-24332312 | Msa0245120:CDS |
| AGTTGCAAGTCAATAGGAAA+AGG | 0.508683 | 2_2:-24331468 | Msa0245120:CDS |
| ATTGTGCACCACAATTGAAA+AGG | 0.511689 | 2_2:-24331432 | Msa0245120:CDS |
| CAGCCTCCTTCACATCTTGA+GGG | 0.514868 | 2_2:+24331326 | None:intergenic |
| ATTCAATAAAATTATTACAA+GGG | 0.524576 | 2_2:-24331001 | Msa0245120:three_prime_UTR |
| GTTGATTAGTATTGAAGAGA+TGG | 0.528693 | 2_2:+24332964 | None:intergenic |
| AGAGGATGATGGAAGATCAA+AGG | 0.536944 | 2_2:-24332456 | Msa0245120:CDS |
| GCAGCCTCCTTCACATCTTG+AGG | 0.537105 | 2_2:+24331325 | None:intergenic |
| AGGATAGAACTTCAATGAAG+TGG | 0.543169 | 2_2:-24332504 | Msa0245120:CDS |
| AAGACCCCTCTCTGGAGAAG+TGG | 0.553472 | 2_2:-24332304 | Msa0245120:CDS |
| GGCAGAGAAACCATATGTGA+AGG | 0.565007 | 2_2:-24331497 | Msa0245120:CDS |
| TGCACCACAATTGAAAAGGA+AGG | 0.566431 | 2_2:-24331428 | Msa0245120:CDS |
| GGAGGCTGCTATTCTACTCA+TGG | 0.567161 | 2_2:-24331311 | Msa0245120:CDS |
| AAATCTTAGCATTCATCAGA+AGG | 0.570288 | 2_2:+24331259 | None:intergenic |
| CATACTAAGTGATGGTGTAG+AGG | 0.591541 | 2_2:-24332850 | Msa0245120:intron |
| AAGTGGACCAACTGGTCCCA+AGG | 0.591915 | 2_2:-24332287 | Msa0245120:intron |
| AGAGAGGGGTCTTAGTTGTG+TGG | 0.598153 | 2_2:+24332314 | None:intergenic |
| GTGACAATGAAGTATTAGAT+GGG | 0.599566 | 2_2:-24331121 | Msa0245120:three_prime_UTR |
| ATCTTGAGGGAAAACTTGAT+GGG | 0.607027 | 2_2:+24331339 | None:intergenic |
| ATATGTACCTTGGGACCAGT+TGG | 0.609719 | 2_2:+24332280 | None:intergenic |
| TTGTATGAGATCAATGTTTG+GGG | 0.620702 | 2_2:-24331187 | Msa0245120:three_prime_UTR |
| TGGTCCACTTCTCCAGAGAG+GGG | 0.626088 | 2_2:+24332300 | None:intergenic |
| GCAGAGAAACCATATGTGAA+GGG | 0.631828 | 2_2:-24331496 | Msa0245120:CDS |
| TGCAAATGGTGAGACTCTTG+TGG | 0.634220 | 2_2:-24331521 | Msa0245120:CDS |
| GCACCACAATTGAAAAGGAA+GGG | 0.634758 | 2_2:-24331427 | Msa0245120:CDS |
| TTTCCCTCAAGATGTGAAGG+AGG | 0.643884 | 2_2:-24331329 | Msa0245120:CDS |
| TCAAACCACATACTAAGTGA+TGG | 0.647670 | 2_2:-24332858 | Msa0245120:CDS |
| GTATTAGATGGGTACATGTG+TGG | 0.664895 | 2_2:-24331110 | Msa0245120:three_prime_UTR |
| CAGTCACTTTGCAATGCCTG+CGG | 0.673738 | 2_2:-24331583 | Msa0245120:CDS |
| GTTGGTCCACTTCTCCAGAG+AGG | 0.682429 | 2_2:+24332298 | None:intergenic |
| GTGTGACTGTAGACTGTGGA+AGG | 0.684080 | 2_2:+24333110 | None:intergenic |
| AAATGGTGAGACTCTTGTGG+TGG | 0.684853 | 2_2:-24331518 | Msa0245120:CDS |
| TGTACGATCATATATGAACA+AGG | 0.699706 | 2_2:+24331032 | None:intergenic |
| ACCAAATCTAGTAAGAACTG+AGG | 0.700207 | 2_2:-24332392 | Msa0245120:CDS |
| AAAGGTGTGACTGTAGACTG+TGG | 0.775569 | 2_2:+24333106 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATATAAAATTTTAAAA+GGG | + | chr2_2:24331327-24331346 | None:intergenic | 0.0% |
| !!! | TATATATATAAAATTTTAAA+AGG | + | chr2_2:24331328-24331347 | None:intergenic | 0.0% |
| !!! | AAATAATTTTTTTTTAATTA+TGG | - | chr2_2:24332230-24332249 | Msa0245120:intron | 0.0% |
| !!! | ATATATATAAAATTTTAAAA+GGG | + | chr2_2:24331327-24331346 | None:intergenic | 0.0% |
| !!! | TATATATATAAAATTTTAAA+AGG | + | chr2_2:24331328-24331347 | None:intergenic | 0.0% |
| !!! | AAATAATTTTTTTTTAATTA+TGG | - | chr2_2:24332230-24332249 | Msa0245120:intron | 0.0% |
| !!! | TATTTAAAATAAAGTTCTTT+AGG | - | chr2_2:24332950-24332969 | Msa0245120:CDS | 10.0% |
| !!! | ATTTAAAATAAAGTTCTTTA+GGG | - | chr2_2:24332951-24332970 | Msa0245120:CDS | 10.0% |
| !! | AATTCAATAAAATTATTACA+AGG | - | chr2_2:24333104-24333123 | Msa0245120:five_prime_UTR | 10.0% |
| !! | ATTCAATAAAATTATTACAA+GGG | - | chr2_2:24333105-24333124 | Msa0245120:five_prime_UTR | 10.0% |
| !!! | TATTTAAAATAAAGTTCTTT+AGG | - | chr2_2:24332950-24332969 | Msa0245120:CDS | 10.0% |
| !!! | ATTTAAAATAAAGTTCTTTA+GGG | - | chr2_2:24332951-24332970 | Msa0245120:CDS | 10.0% |
| !! | AATTCAATAAAATTATTACA+AGG | - | chr2_2:24333104-24333123 | Msa0245120:five_prime_UTR | 10.0% |
| !! | ATTCAATAAAATTATTACAA+GGG | - | chr2_2:24333105-24333124 | Msa0245120:five_prime_UTR | 10.0% |
| !! | TCATTATTTAGATCAAAAAA+AGG | + | chr2_2:24331110-24331129 | None:intergenic | 15.0% |
| !! | TTCAATAAAATTATTACAAG+GGG | - | chr2_2:24333106-24333125 | Msa0245120:five_prime_UTR | 15.0% |
| !! | TCATTATTTAGATCAAAAAA+AGG | + | chr2_2:24331110-24331129 | None:intergenic | 15.0% |
| !! | TTCAATAAAATTATTACAAG+GGG | - | chr2_2:24333106-24333125 | Msa0245120:five_prime_UTR | 15.0% |
| !! | TACAAAATTCTTAACCTAAA+AGG | + | chr2_2:24331494-24331513 | None:intergenic | 20.0% |
| !!! | TTAGAGAAATGTTTTAAAGA+TGG | - | chr2_2:24331933-24331952 | Msa0245120:intron | 20.0% |
| !!! | TGTGGTTTTATTAATTATGT+TGG | - | chr2_2:24333014-24333033 | Msa0245120:CDS | 20.0% |
| !! | TACAAAATTCTTAACCTAAA+AGG | + | chr2_2:24331494-24331513 | None:intergenic | 20.0% |
| !!! | TTAGAGAAATGTTTTAAAGA+TGG | - | chr2_2:24331933-24331952 | Msa0245120:intron | 20.0% |
| !!! | TGTGGTTTTATTAATTATGT+TGG | - | chr2_2:24333014-24333033 | Msa0245120:CDS | 20.0% |
| ! | AAGAAGAAAAAAAGAGACAA+AGG | + | chr2_2:24331021-24331040 | None:intergenic | 25.0% |
| !! | TTTAGATCAAAAAAAGGCAT+AGG | + | chr2_2:24331104-24331123 | None:intergenic | 25.0% |
| !!! | ATCTTGTTTGATCTTGATTT+TGG | + | chr2_2:24331214-24331233 | None:intergenic | 25.0% |
| ! | ATCAAACAAGATCTTATTCT+TGG | - | chr2_2:24331222-24331241 | Msa0245120:three_prime_UTR | 25.0% |
| ! | TCAAACAAGATCTTATTCTT+GGG | - | chr2_2:24331223-24331242 | Msa0245120:three_prime_UTR | 25.0% |
| !! | GTTAAGAATTTTGTAACTTC+TGG | - | chr2_2:24331499-24331518 | Msa0245120:CDS | 25.0% |
| ! | TGAAAAAGGATGAAAAAGAT+TGG | - | chr2_2:24331545-24331564 | Msa0245120:CDS | 25.0% |
| !! | AGATGAGTGTGAAAATTTTA+TGG | - | chr2_2:24331576-24331595 | Msa0245120:CDS | 25.0% |
| ! | TTAATCATTCTCTTCTTTGA+TGG | + | chr2_2:24331631-24331650 | None:intergenic | 25.0% |
| ! | GAGTTCGAGATTAATTAATT+TGG | - | chr2_2:24331955-24331974 | Msa0245120:intron | 25.0% |
| !! | TTCATGATTAAGCTCTTTTA+TGG | - | chr2_2:24332377-24332396 | Msa0245120:CDS | 25.0% |
| !! | TTGAAGATTTGATAACAAGT+TGG | - | chr2_2:24332728-24332747 | Msa0245120:intron | 25.0% |
| ! | ATTTGTATGAGATCAATGTT+TGG | - | chr2_2:24332917-24332936 | Msa0245120:CDS | 25.0% |
| ! | TTTGTATGAGATCAATGTTT+GGG | - | chr2_2:24332918-24332937 | Msa0245120:CDS | 25.0% |
| ! | AAGAAGAAAAAAAGAGACAA+AGG | + | chr2_2:24331021-24331040 | None:intergenic | 25.0% |
| !! | TTTAGATCAAAAAAAGGCAT+AGG | + | chr2_2:24331104-24331123 | None:intergenic | 25.0% |
| !!! | ATCTTGTTTGATCTTGATTT+TGG | + | chr2_2:24331214-24331233 | None:intergenic | 25.0% |
| ! | ATCAAACAAGATCTTATTCT+TGG | - | chr2_2:24331222-24331241 | Msa0245120:three_prime_UTR | 25.0% |
| ! | TCAAACAAGATCTTATTCTT+GGG | - | chr2_2:24331223-24331242 | Msa0245120:three_prime_UTR | 25.0% |
| !! | GTTAAGAATTTTGTAACTTC+TGG | - | chr2_2:24331499-24331518 | Msa0245120:CDS | 25.0% |
| ! | TGAAAAAGGATGAAAAAGAT+TGG | - | chr2_2:24331545-24331564 | Msa0245120:CDS | 25.0% |
| !! | AGATGAGTGTGAAAATTTTA+TGG | - | chr2_2:24331576-24331595 | Msa0245120:CDS | 25.0% |
| ! | TTAATCATTCTCTTCTTTGA+TGG | + | chr2_2:24331631-24331650 | None:intergenic | 25.0% |
| ! | GAGTTCGAGATTAATTAATT+TGG | - | chr2_2:24331955-24331974 | Msa0245120:intron | 25.0% |
| !! | TTCATGATTAAGCTCTTTTA+TGG | - | chr2_2:24332377-24332396 | Msa0245120:CDS | 25.0% |
| !! | TTGAAGATTTGATAACAAGT+TGG | - | chr2_2:24332728-24332747 | Msa0245120:intron | 25.0% |
| ! | ATTTGTATGAGATCAATGTT+TGG | - | chr2_2:24332917-24332936 | Msa0245120:CDS | 25.0% |
| ! | TTTGTATGAGATCAATGTTT+GGG | - | chr2_2:24332918-24332937 | Msa0245120:CDS | 25.0% |
| !! | ATAACGATAAGTTGGTATCA+TGG | + | chr2_2:24331066-24331085 | None:intergenic | 30.0% |
| ! | GTTGATTAGTATTGAAGAGA+TGG | + | chr2_2:24331145-24331164 | None:intergenic | 30.0% |
| ! | GTGTGAAAATTTTATGGATG+AGG | - | chr2_2:24331582-24331601 | Msa0245120:CDS | 30.0% |
| CAAAGAAGAGAATGATTAAG+AGG | - | chr2_2:24331632-24331651 | Msa0245120:intron | 30.0% | |
| TTTCAAACAACAACACTGTT+AGG | - | chr2_2:24331755-24331774 | Msa0245120:intron | 30.0% | |
| TTCAAACAACAACACTGTTA+GGG | - | chr2_2:24331756-24331775 | Msa0245120:intron | 30.0% | |
| ATATTAGATGTCAGTCTATG+AGG | - | chr2_2:24332071-24332090 | Msa0245120:intron | 30.0% | |
| !! | CTATTATGGTTCTGAAACAA+TGG | + | chr2_2:24332101-24332120 | None:intergenic | 30.0% |
| TTGTTTCAGAACCATAATAG+AGG | - | chr2_2:24332101-24332120 | Msa0245120:intron | 30.0% | |
| GAAAACTAAAGCCTCTATTA+TGG | + | chr2_2:24332115-24332134 | None:intergenic | 30.0% | |
| GAACAAATCTTATACAAGCA+AGG | + | chr2_2:24332360-24332379 | None:intergenic | 30.0% | |
| ! | ATTAAGCTCTTTTATGGCTT+AGG | - | chr2_2:24332383-24332402 | Msa0245120:CDS | 30.0% |
| AAATCTTAGCATTCATCAGA+AGG | + | chr2_2:24332850-24332869 | None:intergenic | 30.0% | |
| TTGTATGAGATCAATGTTTG+GGG | - | chr2_2:24332919-24332938 | Msa0245120:CDS | 30.0% | |
| ! | AGTGACAATGAAGTATTAGA+TGG | - | chr2_2:24332984-24333003 | Msa0245120:CDS | 30.0% |
| ! | GTGACAATGAAGTATTAGAT+GGG | - | chr2_2:24332985-24333004 | Msa0245120:CDS | 30.0% |
| TGTACGATCATATATGAACA+AGG | + | chr2_2:24333077-24333096 | None:intergenic | 30.0% | |
| !! | ATAACGATAAGTTGGTATCA+TGG | + | chr2_2:24331066-24331085 | None:intergenic | 30.0% |
| ! | GTTGATTAGTATTGAAGAGA+TGG | + | chr2_2:24331145-24331164 | None:intergenic | 30.0% |
| ! | GTGTGAAAATTTTATGGATG+AGG | - | chr2_2:24331582-24331601 | Msa0245120:CDS | 30.0% |
| CAAAGAAGAGAATGATTAAG+AGG | - | chr2_2:24331632-24331651 | Msa0245120:intron | 30.0% | |
| TTTCAAACAACAACACTGTT+AGG | - | chr2_2:24331755-24331774 | Msa0245120:intron | 30.0% | |
| TTCAAACAACAACACTGTTA+GGG | - | chr2_2:24331756-24331775 | Msa0245120:intron | 30.0% | |
| ATATTAGATGTCAGTCTATG+AGG | - | chr2_2:24332071-24332090 | Msa0245120:intron | 30.0% | |
| !! | CTATTATGGTTCTGAAACAA+TGG | + | chr2_2:24332101-24332120 | None:intergenic | 30.0% |
| TTGTTTCAGAACCATAATAG+AGG | - | chr2_2:24332101-24332120 | Msa0245120:intron | 30.0% | |
| GAAAACTAAAGCCTCTATTA+TGG | + | chr2_2:24332115-24332134 | None:intergenic | 30.0% | |
| GAACAAATCTTATACAAGCA+AGG | + | chr2_2:24332360-24332379 | None:intergenic | 30.0% | |
| ! | ATTAAGCTCTTTTATGGCTT+AGG | - | chr2_2:24332383-24332402 | Msa0245120:CDS | 30.0% |
| AAATCTTAGCATTCATCAGA+AGG | + | chr2_2:24332850-24332869 | None:intergenic | 30.0% | |
| TTGTATGAGATCAATGTTTG+GGG | - | chr2_2:24332919-24332938 | Msa0245120:CDS | 30.0% | |
| ! | AGTGACAATGAAGTATTAGA+TGG | - | chr2_2:24332984-24333003 | Msa0245120:CDS | 30.0% |
| ! | GTGACAATGAAGTATTAGAT+GGG | - | chr2_2:24332985-24333004 | Msa0245120:CDS | 30.0% |
| TGTACGATCATATATGAACA+AGG | + | chr2_2:24333077-24333096 | None:intergenic | 30.0% | |
| GATGCAGAATAACGATAAGT+TGG | + | chr2_2:24331074-24331093 | None:intergenic | 35.0% | |
| ! | AGATCAAAAAAAGGCATAGG+AGG | + | chr2_2:24331101-24331120 | None:intergenic | 35.0% |
| TAGAGAAGAAGATGAAGAAG+TGG | + | chr2_2:24331171-24331190 | None:intergenic | 35.0% | |
| TCAAACCACATACTAAGTGA+TGG | - | chr2_2:24331248-24331267 | Msa0245120:exon | 35.0% | |
| ! | CATGAGATTGTCATCCTTTT+AGG | - | chr2_2:24331477-24331496 | Msa0245120:CDS | 35.0% |
| TTGTAACTTCTGGTGAATCA+TGG | - | chr2_2:24331509-24331528 | Msa0245120:CDS | 35.0% | |
| TGTAACTTCTGGTGAATCAT+GGG | - | chr2_2:24331510-24331529 | Msa0245120:CDS | 35.0% | |
| GGATCATCAAGAAGTGAAAA+AGG | - | chr2_2:24331531-24331550 | Msa0245120:CDS | 35.0% | |
| AGGATAGAACTTCAATGAAG+TGG | - | chr2_2:24331602-24331621 | Msa0245120:intron | 35.0% | |
| GAGAATGATTAAGAGGATGA+TGG | - | chr2_2:24331639-24331658 | Msa0245120:intron | 35.0% | |
| ACCAAATCTAGTAAGAACTG+AGG | - | chr2_2:24331714-24331733 | Msa0245120:intron | 35.0% | |
| TCCTCAGTTCTTACTAGATT+TGG | + | chr2_2:24331718-24331737 | None:intergenic | 35.0% | |
| GTTAATGCGAAGTTATATCG+AGG | + | chr2_2:24332416-24332435 | None:intergenic | 35.0% | |
| AACTTCTTTCCCTTCACATA+TGG | + | chr2_2:24332622-24332641 | None:intergenic | 35.0% | |
| GAAAGAAGTTGCAAGTCAAT+AGG | - | chr2_2:24332632-24332651 | Msa0245120:intron | 35.0% | |
| AGTTGCAAGTCAATAGGAAA+AGG | - | chr2_2:24332638-24332657 | Msa0245120:intron | 35.0% | |
| ATTGTGCACCACAATTGAAA+AGG | - | chr2_2:24332674-24332693 | Msa0245120:intron | 35.0% | |
| ! | TTACCCTTCCTTTTCAATTG+TGG | + | chr2_2:24332685-24332704 | None:intergenic | 35.0% |
| ATCTTGAGGGAAAACTTGAT+GGG | + | chr2_2:24332770-24332789 | None:intergenic | 35.0% | |
| !! | TTATCTTCTGGCTTGCTTAA+TGG | - | chr2_2:24332820-24332839 | Msa0245120:intron | 35.0% |
| AGATCAATGTTTGGGGAAAT+AGG | - | chr2_2:24332926-24332945 | Msa0245120:CDS | 35.0% | |
| GATCAATGTTTGGGGAAATA+GGG | - | chr2_2:24332927-24332946 | Msa0245120:CDS | 35.0% | |
| GATGCAGAATAACGATAAGT+TGG | + | chr2_2:24331074-24331093 | None:intergenic | 35.0% | |
| ! | AGATCAAAAAAAGGCATAGG+AGG | + | chr2_2:24331101-24331120 | None:intergenic | 35.0% |
| TAGAGAAGAAGATGAAGAAG+TGG | + | chr2_2:24331171-24331190 | None:intergenic | 35.0% | |
| TCAAACCACATACTAAGTGA+TGG | - | chr2_2:24331248-24331267 | Msa0245120:exon | 35.0% | |
| ! | CATGAGATTGTCATCCTTTT+AGG | - | chr2_2:24331477-24331496 | Msa0245120:CDS | 35.0% |
| TTGTAACTTCTGGTGAATCA+TGG | - | chr2_2:24331509-24331528 | Msa0245120:CDS | 35.0% | |
| TGTAACTTCTGGTGAATCAT+GGG | - | chr2_2:24331510-24331529 | Msa0245120:CDS | 35.0% | |
| GGATCATCAAGAAGTGAAAA+AGG | - | chr2_2:24331531-24331550 | Msa0245120:CDS | 35.0% | |
| AGGATAGAACTTCAATGAAG+TGG | - | chr2_2:24331602-24331621 | Msa0245120:intron | 35.0% | |
| GAGAATGATTAAGAGGATGA+TGG | - | chr2_2:24331639-24331658 | Msa0245120:intron | 35.0% | |
| ACCAAATCTAGTAAGAACTG+AGG | - | chr2_2:24331714-24331733 | Msa0245120:intron | 35.0% | |
| TCCTCAGTTCTTACTAGATT+TGG | + | chr2_2:24331718-24331737 | None:intergenic | 35.0% | |
| GTTAATGCGAAGTTATATCG+AGG | + | chr2_2:24332416-24332435 | None:intergenic | 35.0% | |
| AACTTCTTTCCCTTCACATA+TGG | + | chr2_2:24332622-24332641 | None:intergenic | 35.0% | |
| GAAAGAAGTTGCAAGTCAAT+AGG | - | chr2_2:24332632-24332651 | Msa0245120:intron | 35.0% | |
| AGTTGCAAGTCAATAGGAAA+AGG | - | chr2_2:24332638-24332657 | Msa0245120:intron | 35.0% | |
| ATTGTGCACCACAATTGAAA+AGG | - | chr2_2:24332674-24332693 | Msa0245120:intron | 35.0% | |
| ! | TTACCCTTCCTTTTCAATTG+TGG | + | chr2_2:24332685-24332704 | None:intergenic | 35.0% |
| ATCTTGAGGGAAAACTTGAT+GGG | + | chr2_2:24332770-24332789 | None:intergenic | 35.0% | |
| !! | TTATCTTCTGGCTTGCTTAA+TGG | - | chr2_2:24332820-24332839 | Msa0245120:intron | 35.0% |
| AGATCAATGTTTGGGGAAAT+AGG | - | chr2_2:24332926-24332945 | Msa0245120:CDS | 35.0% | |
| GATCAATGTTTGGGGAAATA+GGG | - | chr2_2:24332927-24332946 | Msa0245120:CDS | 35.0% | |
| CTACACCATCACTTAGTATG+TGG | + | chr2_2:24331256-24331275 | None:intergenic | 40.0% | |
| ! | CATACTAAGTGATGGTGTAG+AGG | - | chr2_2:24331256-24331275 | Msa0245120:exon | 40.0% |
| !! | AGAGGATGATGGAAGATCAA+AGG | - | chr2_2:24331650-24331669 | Msa0245120:intron | 40.0% |
| !! | GAGGATGATGGAAGATCAAA+GGG | - | chr2_2:24331651-24331670 | Msa0245120:intron | 40.0% |
| ! | TTTTCTTTGTCGAATACCGC+AGG | + | chr2_2:24332542-24332561 | None:intergenic | 40.0% |
| GCAGAGAAACCATATGTGAA+GGG | - | chr2_2:24332610-24332629 | Msa0245120:CDS | 40.0% | |
| TGCACCACAATTGAAAAGGA+AGG | - | chr2_2:24332678-24332697 | Msa0245120:intron | 40.0% | |
| GCACCACAATTGAAAAGGAA+GGG | - | chr2_2:24332679-24332698 | Msa0245120:intron | 40.0% | |
| ! | AACAAGTTGGAGCAACAACT+TGG | - | chr2_2:24332741-24332760 | Msa0245120:intron | 40.0% |
| CATCTTGAGGGAAAACTTGA+TGG | + | chr2_2:24332771-24332790 | None:intergenic | 40.0% | |
| ! | AGTTTTCCCTCAAGATGTGA+AGG | - | chr2_2:24332774-24332793 | Msa0245120:intron | 40.0% |
| !! | CTACTCATGGCTTTATCTTC+TGG | - | chr2_2:24332808-24332827 | Msa0245120:intron | 40.0% |
| GTATTAGATGGGTACATGTG+TGG | - | chr2_2:24332996-24333015 | Msa0245120:CDS | 40.0% | |
| CTACACCATCACTTAGTATG+TGG | + | chr2_2:24331256-24331275 | None:intergenic | 40.0% | |
| ! | CATACTAAGTGATGGTGTAG+AGG | - | chr2_2:24331256-24331275 | Msa0245120:exon | 40.0% |
| !! | AGAGGATGATGGAAGATCAA+AGG | - | chr2_2:24331650-24331669 | Msa0245120:intron | 40.0% |
| !! | GAGGATGATGGAAGATCAAA+GGG | - | chr2_2:24331651-24331670 | Msa0245120:intron | 40.0% |
| ! | TTTTCTTTGTCGAATACCGC+AGG | + | chr2_2:24332542-24332561 | None:intergenic | 40.0% |
| GCAGAGAAACCATATGTGAA+GGG | - | chr2_2:24332610-24332629 | Msa0245120:CDS | 40.0% | |
| TGCACCACAATTGAAAAGGA+AGG | - | chr2_2:24332678-24332697 | Msa0245120:intron | 40.0% | |
| GCACCACAATTGAAAAGGAA+GGG | - | chr2_2:24332679-24332698 | Msa0245120:intron | 40.0% | |
| ! | AACAAGTTGGAGCAACAACT+TGG | - | chr2_2:24332741-24332760 | Msa0245120:intron | 40.0% |
| CATCTTGAGGGAAAACTTGA+TGG | + | chr2_2:24332771-24332790 | None:intergenic | 40.0% | |
| ! | AGTTTTCCCTCAAGATGTGA+AGG | - | chr2_2:24332774-24332793 | Msa0245120:intron | 40.0% |
| !! | CTACTCATGGCTTTATCTTC+TGG | - | chr2_2:24332808-24332827 | Msa0245120:intron | 40.0% |
| GTATTAGATGGGTACATGTG+TGG | - | chr2_2:24332996-24333015 | Msa0245120:CDS | 40.0% | |
| ! | AAAGGTGTGACTGTAGACTG+TGG | + | chr2_2:24331003-24331022 | None:intergenic | 45.0% |
| ATATGTACCTTGGGACCAGT+TGG | + | chr2_2:24331829-24331848 | None:intergenic | 45.0% | |
| CCGTGAGCAATATGTACCTT+GGG | + | chr2_2:24331838-24331857 | None:intergenic | 45.0% | |
| CCCAAGGTACATATTGCTCA+CGG | - | chr2_2:24331835-24331854 | Msa0245120:intron | 45.0% | |
| TCCGTGAGCAATATGTACCT+TGG | + | chr2_2:24331839-24331858 | None:intergenic | 45.0% | |
| TGCAAATGGTGAGACTCTTG+TGG | - | chr2_2:24332585-24332604 | Msa0245120:CDS | 45.0% | |
| AAATGGTGAGACTCTTGTGG+TGG | - | chr2_2:24332588-24332607 | Msa0245120:CDS | 45.0% | |
| GGCAGAGAAACCATATGTGA+AGG | - | chr2_2:24332609-24332628 | Msa0245120:CDS | 45.0% | |
| TTTCCCTCAAGATGTGAAGG+AGG | - | chr2_2:24332777-24332796 | Msa0245120:intron | 45.0% | |
| ! | AAAGGTGTGACTGTAGACTG+TGG | + | chr2_2:24331003-24331022 | None:intergenic | 45.0% |
| ATATGTACCTTGGGACCAGT+TGG | + | chr2_2:24331829-24331848 | None:intergenic | 45.0% | |
| CCGTGAGCAATATGTACCTT+GGG | + | chr2_2:24331838-24331857 | None:intergenic | 45.0% | |
| CCCAAGGTACATATTGCTCA+CGG | - | chr2_2:24331835-24331854 | Msa0245120:intron | 45.0% | |
| TCCGTGAGCAATATGTACCT+TGG | + | chr2_2:24331839-24331858 | None:intergenic | 45.0% | |
| TGCAAATGGTGAGACTCTTG+TGG | - | chr2_2:24332585-24332604 | Msa0245120:CDS | 45.0% | |
| AAATGGTGAGACTCTTGTGG+TGG | - | chr2_2:24332588-24332607 | Msa0245120:CDS | 45.0% | |
| GGCAGAGAAACCATATGTGA+AGG | - | chr2_2:24332609-24332628 | Msa0245120:CDS | 45.0% | |
| TTTCCCTCAAGATGTGAAGG+AGG | - | chr2_2:24332777-24332796 | Msa0245120:intron | 45.0% | |
| !!! | GAAAAAAATATTATTTTAAA+AGG | + | chr2_2:24331867-24331886 | None:intergenic | 5.0% |
| !! | TAGTAATAAAAAAAAAAAAT+TGG | + | chr2_2:24331995-24332014 | None:intergenic | 5.0% |
| !!! | GAAAAAAATATTATTTTAAA+AGG | + | chr2_2:24331867-24331886 | None:intergenic | 5.0% |
| !! | TAGTAATAAAAAAAAAAAAT+TGG | + | chr2_2:24331995-24332014 | None:intergenic | 5.0% |
| GTGTGACTGTAGACTGTGGA+AGG | + | chr2_2:24330999-24331018 | None:intergenic | 50.0% | |
| AGAGAGGGGTCTTAGTTGTG+TGG | + | chr2_2:24331795-24331814 | None:intergenic | 50.0% | |
| ACACAACTAAGACCCCTCTC+TGG | - | chr2_2:24331794-24331813 | Msa0245120:intron | 50.0% | |
| TTGGTCCACTTCTCCAGAGA+GGG | + | chr2_2:24331810-24331829 | None:intergenic | 50.0% | |
| ! | CAGTCACTTTGCAATGCCTG+CGG | - | chr2_2:24332523-24332542 | Msa0245120:CDS | 50.0% |
| ACCATTTGCAGCTGCTGCAA+GGG | + | chr2_2:24332575-24332594 | None:intergenic | 50.0% | |
| CAGCCTCCTTCACATCTTGA+GGG | + | chr2_2:24332783-24332802 | None:intergenic | 50.0% | |
| GGAGGCTGCTATTCTACTCA+TGG | - | chr2_2:24332795-24332814 | Msa0245120:intron | 50.0% | |
| GTGTGACTGTAGACTGTGGA+AGG | + | chr2_2:24330999-24331018 | None:intergenic | 50.0% | |
| AGAGAGGGGTCTTAGTTGTG+TGG | + | chr2_2:24331795-24331814 | None:intergenic | 50.0% | |
| ACACAACTAAGACCCCTCTC+TGG | - | chr2_2:24331794-24331813 | Msa0245120:intron | 50.0% | |
| TTGGTCCACTTCTCCAGAGA+GGG | + | chr2_2:24331810-24331829 | None:intergenic | 50.0% | |
| ! | CAGTCACTTTGCAATGCCTG+CGG | - | chr2_2:24332523-24332542 | Msa0245120:CDS | 50.0% |
| ACCATTTGCAGCTGCTGCAA+GGG | + | chr2_2:24332575-24332594 | None:intergenic | 50.0% | |
| CAGCCTCCTTCACATCTTGA+GGG | + | chr2_2:24332783-24332802 | None:intergenic | 50.0% | |
| GGAGGCTGCTATTCTACTCA+TGG | - | chr2_2:24332795-24332814 | Msa0245120:intron | 50.0% | |
| ! | AAGACCCCTCTCTGGAGAAG+TGG | - | chr2_2:24331802-24331821 | Msa0245120:intron | 55.0% |
| TGGTCCACTTCTCCAGAGAG+GGG | + | chr2_2:24331809-24331828 | None:intergenic | 55.0% | |
| GTTGGTCCACTTCTCCAGAG+AGG | + | chr2_2:24331811-24331830 | None:intergenic | 55.0% | |
| ! | CTCTGGAGAAGTGGACCAAC+TGG | - | chr2_2:24331811-24331830 | Msa0245120:intron | 55.0% |
| AAGTGGACCAACTGGTCCCA+AGG | - | chr2_2:24331819-24331838 | Msa0245120:intron | 55.0% | |
| CACCATTTGCAGCTGCTGCA+AGG | + | chr2_2:24332576-24332595 | None:intergenic | 55.0% | |
| GCAGCCTCCTTCACATCTTG+AGG | + | chr2_2:24332784-24332803 | None:intergenic | 55.0% | |
| ! | AAGACCCCTCTCTGGAGAAG+TGG | - | chr2_2:24331802-24331821 | Msa0245120:intron | 55.0% |
| TGGTCCACTTCTCCAGAGAG+GGG | + | chr2_2:24331809-24331828 | None:intergenic | 55.0% | |
| GTTGGTCCACTTCTCCAGAG+AGG | + | chr2_2:24331811-24331830 | None:intergenic | 55.0% | |
| ! | CTCTGGAGAAGTGGACCAAC+TGG | - | chr2_2:24331811-24331830 | Msa0245120:intron | 55.0% |
| AAGTGGACCAACTGGTCCCA+AGG | - | chr2_2:24331819-24331838 | Msa0245120:intron | 55.0% | |
| CACCATTTGCAGCTGCTGCA+AGG | + | chr2_2:24332576-24332595 | None:intergenic | 55.0% | |
| GCAGCCTCCTTCACATCTTG+AGG | + | chr2_2:24332784-24332803 | None:intergenic | 55.0% | |
| GCCCTTGCAGCAGCTGCAAA+TGG | - | chr2_2:24332571-24332590 | Msa0245120:CDS | 60.0% | |
| GCCCTTGCAGCAGCTGCAAA+TGG | - | chr2_2:24332571-24332590 | Msa0245120:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 24330985 | 24333143 | 24330985 | ID=Msa0245120;Name=Msa0245120 |
| chr2_2 | mRNA | 24330985 | 24333143 | 24330985 | ID=Msa0245120-mRNA-1;Parent=Msa0245120;Name=Msa0245120-mRNA-1;_AED=0.01;_eAED=0.01;_QI=65|1|1|1|1|1|3|279|302 |
| chr2_2 | exon | 24330985 | 24331602 | 24330985 | ID=Msa0245120-mRNA-1:exon:9273;Parent=Msa0245120-mRNA-1 |
| chr2_2 | exon | 24332288 | 24332629 | 24332288 | ID=Msa0245120-mRNA-1:exon:9272;Parent=Msa0245120-mRNA-1 |
| chr2_2 | exon | 24332851 | 24333143 | 24332851 | ID=Msa0245120-mRNA-1:exon:9271;Parent=Msa0245120-mRNA-1 |
| chr2_2 | five_prime_UTR | 24333079 | 24333143 | 24333079 | ID=Msa0245120-mRNA-1:five_prime_utr;Parent=Msa0245120-mRNA-1 |
| chr2_2 | CDS | 24332851 | 24333078 | 24332851 | ID=Msa0245120-mRNA-1:cds;Parent=Msa0245120-mRNA-1 |
| chr2_2 | CDS | 24332288 | 24332629 | 24332288 | ID=Msa0245120-mRNA-1:cds;Parent=Msa0245120-mRNA-1 |
| chr2_2 | CDS | 24331264 | 24331602 | 24331264 | ID=Msa0245120-mRNA-1:cds;Parent=Msa0245120-mRNA-1 |
| chr2_2 | three_prime_UTR | 24330985 | 24331263 | 24330985 | ID=Msa0245120-mRNA-1:three_prime_utr;Parent=Msa0245120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
