Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0321840 | XP_003595135.2 | 91.391 | 302 | 26 | 0 | 1 | 302 | 1 | 302 | 3.37e-178 | 504 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0321840 | sp|Q9SZI6|GAT22_ARATH | 33.333 | 294 | 148 | 9 | 49 | 296 | 61 | 352 | 1.25e-27 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0321840 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0245120 | Msa0321840 | 0.858960 | 5.752783e-63 | -8.615850e-47 |
| Msa0321840 | Msa0600390 | 0.824277 | 8.809049e-54 | -8.615850e-47 |
| Msa0321840 | Msa0640880 | 0.812881 | 3.392201e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0321840 | MtrunA17_Chr2g0299081 | 91.391 | 302 | 26 | 0 | 1 | 302 | 1 | 302 | 0.0 | 504 |
| Msa0321840 | MtrunA17_Chr4g0071301 | 44.109 | 331 | 136 | 17 | 8 | 296 | 10 | 333 | 2.51e-48 | 164 |
| Msa0321840 | MtrunA17_Chr1g0151461 | 63.291 | 79 | 25 | 1 | 152 | 230 | 170 | 244 | 1.33e-25 | 103 |
| Msa0321840 | MtrunA17_Chr4g0068031 | 62.000 | 50 | 19 | 0 | 164 | 213 | 25 | 74 | 2.97e-17 | 77.0 |
| Msa0321840 | MtrunA17_Chr7g0271861 | 75.000 | 36 | 9 | 0 | 169 | 204 | 22 | 57 | 4.36e-14 | 68.2 |
| Msa0321840 | MtrunA17_Chr5g0404131 | 44.706 | 85 | 41 | 1 | 127 | 205 | 144 | 228 | 2.56e-13 | 69.3 |
| Msa0321840 | MtrunA17_Chr1g0213161 | 64.865 | 37 | 13 | 0 | 168 | 204 | 151 | 187 | 9.27e-12 | 63.9 |
| Msa0321840 | MtrunA17_Chr8g0373231 | 65.789 | 38 | 13 | 0 | 168 | 205 | 124 | 161 | 5.57e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0321840 | AT4G26150.1 | 33.333 | 294 | 148 | 9 | 49 | 296 | 61 | 352 | 1.27e-28 | 113 |
| Msa0321840 | AT5G56860.1 | 34.826 | 201 | 82 | 9 | 51 | 202 | 63 | 263 | 4.58e-19 | 87.0 |
| Msa0321840 | AT5G49300.1 | 62.500 | 56 | 20 | 1 | 152 | 206 | 18 | 73 | 7.20e-18 | 79.0 |
| Msa0321840 | AT5G26930.1 | 73.171 | 41 | 11 | 0 | 166 | 206 | 23 | 63 | 2.11e-17 | 77.0 |
| Msa0321840 | AT3G06740.1 | 63.830 | 47 | 17 | 0 | 161 | 207 | 33 | 79 | 6.56e-15 | 71.2 |
| Msa0321840 | AT3G16870.1 | 68.293 | 41 | 13 | 0 | 166 | 206 | 39 | 79 | 2.31e-14 | 70.9 |
| Msa0321840 | AT4G16141.1 | 65.854 | 41 | 14 | 0 | 166 | 206 | 34 | 74 | 4.32e-14 | 70.1 |
| Msa0321840 | AT1G08010.2 | 54.717 | 53 | 24 | 0 | 152 | 204 | 203 | 255 | 8.64e-13 | 68.2 |
| Msa0321840 | AT1G08010.1 | 54.717 | 53 | 24 | 0 | 152 | 204 | 203 | 255 | 8.64e-13 | 68.2 |
| Msa0321840 | AT1G08010.3 | 54.717 | 53 | 24 | 0 | 152 | 204 | 203 | 255 | 8.64e-13 | 68.2 |
| Msa0321840 | AT3G50870.1 | 61.538 | 52 | 19 | 1 | 168 | 219 | 151 | 201 | 1.52e-12 | 67.4 |
| Msa0321840 | AT1G08000.2 | 40.698 | 86 | 47 | 2 | 120 | 204 | 171 | 253 | 1.53e-12 | 67.4 |
| Msa0321840 | AT1G08000.1 | 40.698 | 86 | 47 | 2 | 120 | 204 | 171 | 253 | 1.53e-12 | 67.4 |
| Msa0321840 | AT4G36620.1 | 59.184 | 49 | 20 | 0 | 164 | 212 | 70 | 118 | 3.95e-12 | 64.7 |
| Msa0321840 | AT2G18380.1 | 57.895 | 57 | 21 | 2 | 169 | 222 | 92 | 148 | 5.16e-12 | 64.3 |
| Msa0321840 | AT3G60530.1 | 31.481 | 108 | 68 | 2 | 136 | 242 | 130 | 232 | 5.52e-11 | 62.0 |
| Msa0321840 | AT2G45050.1 | 36.250 | 80 | 50 | 1 | 157 | 235 | 167 | 246 | 7.89e-11 | 62.0 |
Find 71 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATCTTCTGGCTTGCTTAA+TGG | 0.177034 | 2_4:-23776140 | Msa0321840:CDS |
| AGATCAATGTTTGGGGAAAT+AGG | 0.218766 | 2_4:-23776034 | Msa0321840:three_prime_UTR |
| TATTTAAAATAAAGTTCTTT+AGG | 0.220302 | 2_4:-23776010 | Msa0321840:three_prime_UTR |
| ATCTTGTTTGATCTTGATTT+TGG | 0.229038 | 2_4:+23777755 | None:intergenic |
| CTACTCATGGCTTTATCTTC+TGG | 0.251698 | 2_4:-23776152 | Msa0321840:CDS |
| TTTCAAACAACAACACTGTT+AGG | 0.256322 | 2_4:-23777204 | Msa0321840:CDS |
| TTAATCATTCTCTTCTTTGA+TGG | 0.270861 | 2_4:+23777331 | None:intergenic |
| TCCTCAGTTCTTACTAGATT+TGG | 0.275505 | 2_4:+23777244 | None:intergenic |
| ATCAAACAAGATCTTATTCT+TGG | 0.275784 | 2_4:-23777744 | Msa0321840:CDS |
| ATTTAAAATAAAGTTCTTTA+GGG | 0.311024 | 2_4:-23776009 | Msa0321840:three_prime_UTR |
| GGATCATCAAGAAGTGAAAA+AGG | 0.339108 | 2_4:-23777428 | Msa0321840:CDS |
| AACTTCTTTCCCTTCACATA+TGG | 0.359398 | 2_4:+23776341 | None:intergenic |
| AGTGACAATGAAGTATTAGA+TGG | 0.364168 | 2_4:-23775976 | Msa0321840:three_prime_UTR |
| CATCTTGAGGGAAAACTTGA+TGG | 0.367521 | 2_4:+23776192 | None:intergenic |
| TTTGTATGAGATCAATGTTT+GGG | 0.369528 | 2_4:-23776042 | Msa0321840:three_prime_UTR |
| ACCATTTGCAGCTGCTGCAA+GGG | 0.392222 | 2_4:+23776388 | None:intergenic |
| ATTTGTATGAGATCAATGTT+TGG | 0.405757 | 2_4:-23776043 | Msa0321840:three_prime_UTR |
| GCCCTTGCAGCAGCTGCAAA+TGG | 0.406328 | 2_4:-23776389 | Msa0321840:CDS |
| CTCTGGAGAAGTGGACCAAC+TGG | 0.407869 | 2_4:-23777148 | Msa0321840:CDS |
| GAAAGAAGTTGCAAGTCAAT+AGG | 0.415316 | 2_4:-23776328 | Msa0321840:CDS |
| TTGTAACTTCTGGTGAATCA+TGG | 0.418749 | 2_4:-23777450 | Msa0321840:CDS |
| GATCAATGTTTGGGGAAATA+GGG | 0.420396 | 2_4:-23776033 | Msa0321840:three_prime_UTR |
| CACCATTTGCAGCTGCTGCA+AGG | 0.426560 | 2_4:+23776387 | None:intergenic |
| CATTCAATAAAATTATTACA+AGG | 0.433600 | 2_4:-23775850 | Msa0321840:three_prime_UTR |
| CAAAGAAGAGAATGATTAAG+AGG | 0.444414 | 2_4:-23777327 | Msa0321840:CDS |
| TCAAACAAGATCTTATTCTT+GGG | 0.457205 | 2_4:-23777743 | Msa0321840:CDS |
| TTCAAACAACAACACTGTTA+GGG | 0.464863 | 2_4:-23777203 | Msa0321840:CDS |
| GAGAATGATTAAGAGGATGA+TGG | 0.470043 | 2_4:-23777320 | Msa0321840:CDS |
| TAGAGAAGAAGATGAAGAAG+TGG | 0.474019 | 2_4:+23777798 | None:intergenic |
| TTGAAGATTTGATAACAAGT+TGG | 0.482551 | 2_4:-23776232 | Msa0321840:CDS |
| CTACACCATCACTTAATATG+TGG | 0.485834 | 2_4:+23777713 | None:intergenic |
| GAGGATGATGGAAGATCAAA+GGG | 0.487515 | 2_4:-23777308 | Msa0321840:CDS |
| TGTAACTTCTGGTGAATCAT+GGG | 0.493931 | 2_4:-23777449 | Msa0321840:CDS |
| GATGCAGAATAACGATAAGT+TGG | 0.493962 | 2_4:+23777895 | None:intergenic |
| TTGGTCCACTTCTCCAGAGA+GGG | 0.496789 | 2_4:+23777152 | None:intergenic |
| ATAACGATAAGTTGGTATCA+TGG | 0.500444 | 2_4:+23777903 | None:intergenic |
| AACAAGTTGGAGCAACAACT+TGG | 0.506773 | 2_4:-23776219 | Msa0321840:CDS |
| ACACAACTAAGACCCCTCTC+TGG | 0.508622 | 2_4:-23777165 | Msa0321840:CDS |
| AGTTGCAAGTCAATAGGAAA+AGG | 0.508683 | 2_4:-23776322 | Msa0321840:CDS |
| ATTGTGCACCACAATTGAAA+AGG | 0.511689 | 2_4:-23776286 | Msa0321840:CDS |
| TTCAATAAAATTATTACAAG+GGG | 0.513495 | 2_4:-23775848 | Msa0321840:three_prime_UTR |
| CAGCCTCCTTCACATCTTGA+GGG | 0.514868 | 2_4:+23776180 | None:intergenic |
| GTTGATTAGTATTGAAGAGA+TGG | 0.528693 | 2_4:+23777824 | None:intergenic |
| AGAGGATGATGGAAGATCAA+AGG | 0.536944 | 2_4:-23777309 | Msa0321840:CDS |
| GCAGCCTCCTTCACATCTTG+AGG | 0.537105 | 2_4:+23776179 | None:intergenic |
| AAGACCCCTCTCTGGAGAAG+TGG | 0.553472 | 2_4:-23777157 | Msa0321840:CDS |
| CATATTAAGTGATGGTGTAG+AGG | 0.563231 | 2_4:-23777710 | Msa0321840:intron |
| GGCAGAGAAACCATATGTGA+AGG | 0.565007 | 2_4:-23776351 | Msa0321840:CDS |
| TGCACCACAATTGAAAAGGA+AGG | 0.566431 | 2_4:-23776282 | Msa0321840:CDS |
| GGAGGCTGCTATTCTACTCA+TGG | 0.567161 | 2_4:-23776165 | Msa0321840:CDS |
| ATTCAATAAAATTATTACAA+GGG | 0.570035 | 2_4:-23775849 | Msa0321840:three_prime_UTR |
| AAATCTTAGCATTCATCAGA+AGG | 0.570288 | 2_4:+23776113 | None:intergenic |
| AAGTGGACCAACTGGTCCCA+AGG | 0.591915 | 2_4:-23777140 | Msa0321840:intron |
| AGAGAGGGGTCTTAGTTGTG+TGG | 0.598153 | 2_4:+23777167 | None:intergenic |
| GTGACAATGAAGTATTAGAT+GGG | 0.599566 | 2_4:-23775975 | Msa0321840:three_prime_UTR |
| ATATGTACCTTGGGACCAGT+TGG | 0.609719 | 2_4:+23777133 | None:intergenic |
| TCAAACCACATATTAAGTGA+TGG | 0.619574 | 2_4:-23777718 | Msa0321840:CDS |
| TTGTATGAGATCAATGTTTG+GGG | 0.620702 | 2_4:-23776041 | Msa0321840:three_prime_UTR |
| TGGTCCACTTCTCCAGAGAG+GGG | 0.626088 | 2_4:+23777153 | None:intergenic |
| GCAGAGAAACCATATGTGAA+GGG | 0.631828 | 2_4:-23776350 | Msa0321840:CDS |
| TGCAAATGGTGAGACTCTTG+TGG | 0.634220 | 2_4:-23776375 | Msa0321840:CDS |
| GCACCACAATTGAAAAGGAA+GGG | 0.634758 | 2_4:-23776281 | Msa0321840:CDS |
| TTTCCCTCAAGATGTGAAGG+AGG | 0.643884 | 2_4:-23776183 | Msa0321840:CDS |
| GTATTAGATGGGTACATGTG+TGG | 0.664895 | 2_4:-23775964 | Msa0321840:three_prime_UTR |
| CAGTCACTTTGCAATGCCTG+CGG | 0.673738 | 2_4:-23776437 | Msa0321840:CDS |
| GTTGGTCCACTTCTCCAGAG+AGG | 0.682429 | 2_4:+23777151 | None:intergenic |
| GTGTGACTGTAGACTGTGGA+AGG | 0.684080 | 2_4:+23777970 | None:intergenic |
| AAATGGTGAGACTCTTGTGG+TGG | 0.684853 | 2_4:-23776372 | Msa0321840:CDS |
| TGTACGATCATATATGAACA+AGG | 0.699706 | 2_4:+23775886 | None:intergenic |
| ACCAAATCTAGTAAGAACTG+AGG | 0.700207 | 2_4:-23777245 | Msa0321840:CDS |
| AAAGGTGTGACTGTAGACTG+TGG | 0.775569 | 2_4:+23777966 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATATATAAAATTTTAAA+GGG | + | chr2_4:23776177-23776196 | None:intergenic | 0.0% |
| !!! | ATATATATATAAAATTTTAA+AGG | + | chr2_4:23776178-23776197 | None:intergenic | 0.0% |
| !!! | AAATAATTTTTTTTTAATTA+TGG | - | chr2_4:23777084-23777103 | Msa0321840:intron | 0.0% |
| !!! | TATATATATAAAATTTTAAA+GGG | + | chr2_4:23776177-23776196 | None:intergenic | 0.0% |
| !!! | ATATATATATAAAATTTTAA+AGG | + | chr2_4:23776178-23776197 | None:intergenic | 0.0% |
| !!! | AAATAATTTTTTTTTAATTA+TGG | - | chr2_4:23777084-23777103 | Msa0321840:intron | 0.0% |
| !!! | TATTTAAAATAAAGTTCTTT+AGG | - | chr2_4:23777804-23777823 | Msa0321840:CDS | 10.0% |
| !!! | ATTTAAAATAAAGTTCTTTA+GGG | - | chr2_4:23777805-23777824 | Msa0321840:CDS | 10.0% |
| !! | ATTCAATAAAATTATTACAA+GGG | - | chr2_4:23777965-23777984 | Msa0321840:five_prime_UTR | 10.0% |
| !!! | TATTTAAAATAAAGTTCTTT+AGG | - | chr2_4:23777804-23777823 | Msa0321840:CDS | 10.0% |
| !!! | ATTTAAAATAAAGTTCTTTA+GGG | - | chr2_4:23777805-23777824 | Msa0321840:CDS | 10.0% |
| !! | ATTCAATAAAATTATTACAA+GGG | - | chr2_4:23777965-23777984 | Msa0321840:five_prime_UTR | 10.0% |
| !! | TCATTATTTAGATCAAAAAA+AGG | + | chr2_4:23775958-23775977 | None:intergenic | 15.0% |
| !! | CATTCAATAAAATTATTACA+AGG | - | chr2_4:23777964-23777983 | Msa0321840:five_prime_UTR | 15.0% |
| !! | TTCAATAAAATTATTACAAG+GGG | - | chr2_4:23777966-23777985 | Msa0321840:five_prime_UTR | 15.0% |
| !! | TCATTATTTAGATCAAAAAA+AGG | + | chr2_4:23775958-23775977 | None:intergenic | 15.0% |
| !! | CATTCAATAAAATTATTACA+AGG | - | chr2_4:23777964-23777983 | Msa0321840:five_prime_UTR | 15.0% |
| !! | TTCAATAAAATTATTACAAG+GGG | - | chr2_4:23777966-23777985 | Msa0321840:five_prime_UTR | 15.0% |
| !! | TACAAAATTCTTAACCTAAA+AGG | + | chr2_4:23776349-23776368 | None:intergenic | 20.0% |
| !!! | TTAGAGAAATGTTTTAAAGA+TGG | - | chr2_4:23776788-23776807 | Msa0321840:intron | 20.0% |
| !!! | TGTGGTTTTATTAATTATGT+TGG | - | chr2_4:23777868-23777887 | Msa0321840:CDS | 20.0% |
| !! | TACAAAATTCTTAACCTAAA+AGG | + | chr2_4:23776349-23776368 | None:intergenic | 20.0% |
| !!! | TTAGAGAAATGTTTTAAAGA+TGG | - | chr2_4:23776788-23776807 | Msa0321840:intron | 20.0% |
| !!! | TGTGGTTTTATTAATTATGT+TGG | - | chr2_4:23777868-23777887 | Msa0321840:CDS | 20.0% |
| ! | AAGAAGAAAAAAAGAGACAA+AGG | + | chr2_4:23775869-23775888 | None:intergenic | 25.0% |
| !! | TTTAGATCAAAAAAAGGCAT+AGG | + | chr2_4:23775952-23775971 | None:intergenic | 25.0% |
| !!! | ATCTTGTTTGATCTTGATTT+TGG | + | chr2_4:23776062-23776081 | None:intergenic | 25.0% |
| ! | ATCAAACAAGATCTTATTCT+TGG | - | chr2_4:23776070-23776089 | Msa0321840:three_prime_UTR | 25.0% |
| ! | TCAAACAAGATCTTATTCTT+GGG | - | chr2_4:23776071-23776090 | Msa0321840:three_prime_UTR | 25.0% |
| !! | GTTAAGAATTTTGTAACTTC+TGG | - | chr2_4:23776354-23776373 | Msa0321840:CDS | 25.0% |
| ! | TGAAAAAGGATGAAAAAGAT+TGG | - | chr2_4:23776400-23776419 | Msa0321840:CDS | 25.0% |
| ! | TTAATCATTCTCTTCTTTGA+TGG | + | chr2_4:23776486-23776505 | None:intergenic | 25.0% |
| ! | GAGTTCGAGATTAATTAATT+TGG | - | chr2_4:23776810-23776829 | Msa0321840:intron | 25.0% |
| !! | TTCATGATTAAGCTCTTTTA+TGG | - | chr2_4:23777231-23777250 | Msa0321840:CDS | 25.0% |
| !! | TTGAAGATTTGATAACAAGT+TGG | - | chr2_4:23777582-23777601 | Msa0321840:intron | 25.0% |
| ! | ATTTGTATGAGATCAATGTT+TGG | - | chr2_4:23777771-23777790 | Msa0321840:CDS | 25.0% |
| ! | TTTGTATGAGATCAATGTTT+GGG | - | chr2_4:23777772-23777791 | Msa0321840:CDS | 25.0% |
| ! | AAGAAGAAAAAAAGAGACAA+AGG | + | chr2_4:23775869-23775888 | None:intergenic | 25.0% |
| !! | TTTAGATCAAAAAAAGGCAT+AGG | + | chr2_4:23775952-23775971 | None:intergenic | 25.0% |
| !!! | ATCTTGTTTGATCTTGATTT+TGG | + | chr2_4:23776062-23776081 | None:intergenic | 25.0% |
| ! | ATCAAACAAGATCTTATTCT+TGG | - | chr2_4:23776070-23776089 | Msa0321840:three_prime_UTR | 25.0% |
| ! | TCAAACAAGATCTTATTCTT+GGG | - | chr2_4:23776071-23776090 | Msa0321840:three_prime_UTR | 25.0% |
| !! | GTTAAGAATTTTGTAACTTC+TGG | - | chr2_4:23776354-23776373 | Msa0321840:CDS | 25.0% |
| ! | TGAAAAAGGATGAAAAAGAT+TGG | - | chr2_4:23776400-23776419 | Msa0321840:CDS | 25.0% |
| ! | TTAATCATTCTCTTCTTTGA+TGG | + | chr2_4:23776486-23776505 | None:intergenic | 25.0% |
| ! | GAGTTCGAGATTAATTAATT+TGG | - | chr2_4:23776810-23776829 | Msa0321840:intron | 25.0% |
| !! | TTCATGATTAAGCTCTTTTA+TGG | - | chr2_4:23777231-23777250 | Msa0321840:CDS | 25.0% |
| !! | TTGAAGATTTGATAACAAGT+TGG | - | chr2_4:23777582-23777601 | Msa0321840:intron | 25.0% |
| ! | ATTTGTATGAGATCAATGTT+TGG | - | chr2_4:23777771-23777790 | Msa0321840:CDS | 25.0% |
| ! | TTTGTATGAGATCAATGTTT+GGG | - | chr2_4:23777772-23777791 | Msa0321840:CDS | 25.0% |
| !! | ATAACGATAAGTTGGTATCA+TGG | + | chr2_4:23775914-23775933 | None:intergenic | 30.0% |
| ! | GTTGATTAGTATTGAAGAGA+TGG | + | chr2_4:23775993-23776012 | None:intergenic | 30.0% |
| TCAAACCACATATTAAGTGA+TGG | - | chr2_4:23776096-23776115 | Msa0321840:three_prime_UTR | 30.0% | |
| ! | AGACGAGTATGAAAGTTTTA+TGG | - | chr2_4:23776431-23776450 | Msa0321840:CDS | 30.0% |
| CAAAGAAGAGAATGATTAAG+AGG | - | chr2_4:23776487-23776506 | Msa0321840:intron | 30.0% | |
| TTTCAAACAACAACACTGTT+AGG | - | chr2_4:23776610-23776629 | Msa0321840:intron | 30.0% | |
| TTCAAACAACAACACTGTTA+GGG | - | chr2_4:23776611-23776630 | Msa0321840:intron | 30.0% | |
| ATATTAGATGTCAGTCTATG+AGG | - | chr2_4:23776925-23776944 | Msa0321840:intron | 30.0% | |
| !! | CTATTATGGTTCTGAAACAA+TGG | + | chr2_4:23776955-23776974 | None:intergenic | 30.0% |
| TTGTTTCAGAACCATAATAG+AGG | - | chr2_4:23776955-23776974 | Msa0321840:intron | 30.0% | |
| GAAAACTAAAGCCTCTATTA+TGG | + | chr2_4:23776969-23776988 | None:intergenic | 30.0% | |
| GAACAAATCTTATACAAGCA+AGG | + | chr2_4:23777214-23777233 | None:intergenic | 30.0% | |
| ! | ATTAAGCTCTTTTATGGCTT+AGG | - | chr2_4:23777237-23777256 | Msa0321840:CDS | 30.0% |
| AAATCTTAGCATTCATCAGA+AGG | + | chr2_4:23777704-23777723 | None:intergenic | 30.0% | |
| TTGTATGAGATCAATGTTTG+GGG | - | chr2_4:23777773-23777792 | Msa0321840:CDS | 30.0% | |
| ! | AGTGACAATGAAGTATTAGA+TGG | - | chr2_4:23777838-23777857 | Msa0321840:CDS | 30.0% |
| ! | GTGACAATGAAGTATTAGAT+GGG | - | chr2_4:23777839-23777858 | Msa0321840:CDS | 30.0% |
| TGTACGATCATATATGAACA+AGG | + | chr2_4:23777931-23777950 | None:intergenic | 30.0% | |
| !! | ATAACGATAAGTTGGTATCA+TGG | + | chr2_4:23775914-23775933 | None:intergenic | 30.0% |
| ! | GTTGATTAGTATTGAAGAGA+TGG | + | chr2_4:23775993-23776012 | None:intergenic | 30.0% |
| TCAAACCACATATTAAGTGA+TGG | - | chr2_4:23776096-23776115 | Msa0321840:three_prime_UTR | 30.0% | |
| ! | AGACGAGTATGAAAGTTTTA+TGG | - | chr2_4:23776431-23776450 | Msa0321840:CDS | 30.0% |
| CAAAGAAGAGAATGATTAAG+AGG | - | chr2_4:23776487-23776506 | Msa0321840:intron | 30.0% | |
| TTTCAAACAACAACACTGTT+AGG | - | chr2_4:23776610-23776629 | Msa0321840:intron | 30.0% | |
| TTCAAACAACAACACTGTTA+GGG | - | chr2_4:23776611-23776630 | Msa0321840:intron | 30.0% | |
| ATATTAGATGTCAGTCTATG+AGG | - | chr2_4:23776925-23776944 | Msa0321840:intron | 30.0% | |
| !! | CTATTATGGTTCTGAAACAA+TGG | + | chr2_4:23776955-23776974 | None:intergenic | 30.0% |
| TTGTTTCAGAACCATAATAG+AGG | - | chr2_4:23776955-23776974 | Msa0321840:intron | 30.0% | |
| GAAAACTAAAGCCTCTATTA+TGG | + | chr2_4:23776969-23776988 | None:intergenic | 30.0% | |
| GAACAAATCTTATACAAGCA+AGG | + | chr2_4:23777214-23777233 | None:intergenic | 30.0% | |
| ! | ATTAAGCTCTTTTATGGCTT+AGG | - | chr2_4:23777237-23777256 | Msa0321840:CDS | 30.0% |
| AAATCTTAGCATTCATCAGA+AGG | + | chr2_4:23777704-23777723 | None:intergenic | 30.0% | |
| TTGTATGAGATCAATGTTTG+GGG | - | chr2_4:23777773-23777792 | Msa0321840:CDS | 30.0% | |
| ! | AGTGACAATGAAGTATTAGA+TGG | - | chr2_4:23777838-23777857 | Msa0321840:CDS | 30.0% |
| ! | GTGACAATGAAGTATTAGAT+GGG | - | chr2_4:23777839-23777858 | Msa0321840:CDS | 30.0% |
| TGTACGATCATATATGAACA+AGG | + | chr2_4:23777931-23777950 | None:intergenic | 30.0% | |
| GATGCAGAATAACGATAAGT+TGG | + | chr2_4:23775922-23775941 | None:intergenic | 35.0% | |
| ! | AGATCAAAAAAAGGCATAGG+AGG | + | chr2_4:23775949-23775968 | None:intergenic | 35.0% |
| TAGAGAAGAAGATGAAGAAG+TGG | + | chr2_4:23776019-23776038 | None:intergenic | 35.0% | |
| CTACACCATCACTTAATATG+TGG | + | chr2_4:23776104-23776123 | None:intergenic | 35.0% | |
| ! | CATATTAAGTGATGGTGTAG+AGG | - | chr2_4:23776104-23776123 | Msa0321840:exon | 35.0% |
| ! | CATGTGATTGTCATCCTTTT+AGG | - | chr2_4:23776332-23776351 | Msa0321840:CDS | 35.0% |
| TTGTAACTTCTGGTGAATCA+TGG | - | chr2_4:23776364-23776383 | Msa0321840:CDS | 35.0% | |
| TGTAACTTCTGGTGAATCAT+GGG | - | chr2_4:23776365-23776384 | Msa0321840:CDS | 35.0% | |
| GGATCATCAAGAAGTGAAAA+AGG | - | chr2_4:23776386-23776405 | Msa0321840:CDS | 35.0% | |
| !! | GTATGAAAGTTTTATGGCTG+AGG | - | chr2_4:23776437-23776456 | Msa0321840:CDS | 35.0% |
| GAGAATGATTAAGAGGATGA+TGG | - | chr2_4:23776494-23776513 | Msa0321840:intron | 35.0% | |
| ACCAAATCTAGTAAGAACTG+AGG | - | chr2_4:23776569-23776588 | Msa0321840:intron | 35.0% | |
| TCCTCAGTTCTTACTAGATT+TGG | + | chr2_4:23776573-23776592 | None:intergenic | 35.0% | |
| GTTAATGCGAAGTTATATCG+AGG | + | chr2_4:23777270-23777289 | None:intergenic | 35.0% | |
| AACTTCTTTCCCTTCACATA+TGG | + | chr2_4:23777476-23777495 | None:intergenic | 35.0% | |
| GAAAGAAGTTGCAAGTCAAT+AGG | - | chr2_4:23777486-23777505 | Msa0321840:intron | 35.0% | |
| AGTTGCAAGTCAATAGGAAA+AGG | - | chr2_4:23777492-23777511 | Msa0321840:intron | 35.0% | |
| ATTGTGCACCACAATTGAAA+AGG | - | chr2_4:23777528-23777547 | Msa0321840:intron | 35.0% | |
| ! | TTACCCTTCCTTTTCAATTG+TGG | + | chr2_4:23777539-23777558 | None:intergenic | 35.0% |
| !! | TTATCTTCTGGCTTGCTTAA+TGG | - | chr2_4:23777674-23777693 | Msa0321840:intron | 35.0% |
| AGATCAATGTTTGGGGAAAT+AGG | - | chr2_4:23777780-23777799 | Msa0321840:CDS | 35.0% | |
| GATCAATGTTTGGGGAAATA+GGG | - | chr2_4:23777781-23777800 | Msa0321840:CDS | 35.0% | |
| GATGCAGAATAACGATAAGT+TGG | + | chr2_4:23775922-23775941 | None:intergenic | 35.0% | |
| ! | AGATCAAAAAAAGGCATAGG+AGG | + | chr2_4:23775949-23775968 | None:intergenic | 35.0% |
| TAGAGAAGAAGATGAAGAAG+TGG | + | chr2_4:23776019-23776038 | None:intergenic | 35.0% | |
| CTACACCATCACTTAATATG+TGG | + | chr2_4:23776104-23776123 | None:intergenic | 35.0% | |
| ! | CATATTAAGTGATGGTGTAG+AGG | - | chr2_4:23776104-23776123 | Msa0321840:exon | 35.0% |
| ! | CATGTGATTGTCATCCTTTT+AGG | - | chr2_4:23776332-23776351 | Msa0321840:CDS | 35.0% |
| TTGTAACTTCTGGTGAATCA+TGG | - | chr2_4:23776364-23776383 | Msa0321840:CDS | 35.0% | |
| TGTAACTTCTGGTGAATCAT+GGG | - | chr2_4:23776365-23776384 | Msa0321840:CDS | 35.0% | |
| GGATCATCAAGAAGTGAAAA+AGG | - | chr2_4:23776386-23776405 | Msa0321840:CDS | 35.0% | |
| !! | GTATGAAAGTTTTATGGCTG+AGG | - | chr2_4:23776437-23776456 | Msa0321840:CDS | 35.0% |
| GAGAATGATTAAGAGGATGA+TGG | - | chr2_4:23776494-23776513 | Msa0321840:intron | 35.0% | |
| ACCAAATCTAGTAAGAACTG+AGG | - | chr2_4:23776569-23776588 | Msa0321840:intron | 35.0% | |
| TCCTCAGTTCTTACTAGATT+TGG | + | chr2_4:23776573-23776592 | None:intergenic | 35.0% | |
| GTTAATGCGAAGTTATATCG+AGG | + | chr2_4:23777270-23777289 | None:intergenic | 35.0% | |
| AACTTCTTTCCCTTCACATA+TGG | + | chr2_4:23777476-23777495 | None:intergenic | 35.0% | |
| GAAAGAAGTTGCAAGTCAAT+AGG | - | chr2_4:23777486-23777505 | Msa0321840:intron | 35.0% | |
| AGTTGCAAGTCAATAGGAAA+AGG | - | chr2_4:23777492-23777511 | Msa0321840:intron | 35.0% | |
| ATTGTGCACCACAATTGAAA+AGG | - | chr2_4:23777528-23777547 | Msa0321840:intron | 35.0% | |
| ! | TTACCCTTCCTTTTCAATTG+TGG | + | chr2_4:23777539-23777558 | None:intergenic | 35.0% |
| !! | TTATCTTCTGGCTTGCTTAA+TGG | - | chr2_4:23777674-23777693 | Msa0321840:intron | 35.0% |
| AGATCAATGTTTGGGGAAAT+AGG | - | chr2_4:23777780-23777799 | Msa0321840:CDS | 35.0% | |
| GATCAATGTTTGGGGAAATA+GGG | - | chr2_4:23777781-23777800 | Msa0321840:CDS | 35.0% | |
| !! | AGAGGATGATGGAAGATCAA+AGG | - | chr2_4:23776505-23776524 | Msa0321840:intron | 40.0% |
| !! | GAGGATGATGGAAGATCAAA+GGG | - | chr2_4:23776506-23776525 | Msa0321840:intron | 40.0% |
| ! | TTTTCTTTGTCGAATACCGC+AGG | + | chr2_4:23777396-23777415 | None:intergenic | 40.0% |
| GCAGAGAAACCATATGTGAA+GGG | - | chr2_4:23777464-23777483 | Msa0321840:intron | 40.0% | |
| TGCACCACAATTGAAAAGGA+AGG | - | chr2_4:23777532-23777551 | Msa0321840:intron | 40.0% | |
| GCACCACAATTGAAAAGGAA+GGG | - | chr2_4:23777533-23777552 | Msa0321840:intron | 40.0% | |
| ! | AACAAGTTGGAGCAACAACT+TGG | - | chr2_4:23777595-23777614 | Msa0321840:intron | 40.0% |
| CATCTTGAGGGAAAACTTGA+TGG | + | chr2_4:23777625-23777644 | None:intergenic | 40.0% | |
| ! | AGTTTTCCCTCAAGATGTGA+AGG | - | chr2_4:23777628-23777647 | Msa0321840:intron | 40.0% |
| !! | CTACTCATGGCTTTATCTTC+TGG | - | chr2_4:23777662-23777681 | Msa0321840:intron | 40.0% |
| GTATTAGATGGGTACATGTG+TGG | - | chr2_4:23777850-23777869 | Msa0321840:CDS | 40.0% | |
| !! | AGAGGATGATGGAAGATCAA+AGG | - | chr2_4:23776505-23776524 | Msa0321840:intron | 40.0% |
| !! | GAGGATGATGGAAGATCAAA+GGG | - | chr2_4:23776506-23776525 | Msa0321840:intron | 40.0% |
| ! | TTTTCTTTGTCGAATACCGC+AGG | + | chr2_4:23777396-23777415 | None:intergenic | 40.0% |
| GCAGAGAAACCATATGTGAA+GGG | - | chr2_4:23777464-23777483 | Msa0321840:intron | 40.0% | |
| TGCACCACAATTGAAAAGGA+AGG | - | chr2_4:23777532-23777551 | Msa0321840:intron | 40.0% | |
| GCACCACAATTGAAAAGGAA+GGG | - | chr2_4:23777533-23777552 | Msa0321840:intron | 40.0% | |
| ! | AACAAGTTGGAGCAACAACT+TGG | - | chr2_4:23777595-23777614 | Msa0321840:intron | 40.0% |
| CATCTTGAGGGAAAACTTGA+TGG | + | chr2_4:23777625-23777644 | None:intergenic | 40.0% | |
| ! | AGTTTTCCCTCAAGATGTGA+AGG | - | chr2_4:23777628-23777647 | Msa0321840:intron | 40.0% |
| !! | CTACTCATGGCTTTATCTTC+TGG | - | chr2_4:23777662-23777681 | Msa0321840:intron | 40.0% |
| GTATTAGATGGGTACATGTG+TGG | - | chr2_4:23777850-23777869 | Msa0321840:CDS | 40.0% | |
| ! | AAAGGTGTGACTGTAGACTG+TGG | + | chr2_4:23775851-23775870 | None:intergenic | 45.0% |
| ATATGTACCTTGGGACCAGT+TGG | + | chr2_4:23776684-23776703 | None:intergenic | 45.0% | |
| CCGTGAGCAATATGTACCTT+GGG | + | chr2_4:23776693-23776712 | None:intergenic | 45.0% | |
| CCCAAGGTACATATTGCTCA+CGG | - | chr2_4:23776690-23776709 | Msa0321840:intron | 45.0% | |
| TCCGTGAGCAATATGTACCT+TGG | + | chr2_4:23776694-23776713 | None:intergenic | 45.0% | |
| TGCAAATGGTGAGACTCTTG+TGG | - | chr2_4:23777439-23777458 | Msa0321840:CDS | 45.0% | |
| AAATGGTGAGACTCTTGTGG+TGG | - | chr2_4:23777442-23777461 | Msa0321840:CDS | 45.0% | |
| GGCAGAGAAACCATATGTGA+AGG | - | chr2_4:23777463-23777482 | Msa0321840:CDS | 45.0% | |
| TTTCCCTCAAGATGTGAAGG+AGG | - | chr2_4:23777631-23777650 | Msa0321840:intron | 45.0% | |
| ! | AAAGGTGTGACTGTAGACTG+TGG | + | chr2_4:23775851-23775870 | None:intergenic | 45.0% |
| ATATGTACCTTGGGACCAGT+TGG | + | chr2_4:23776684-23776703 | None:intergenic | 45.0% | |
| CCGTGAGCAATATGTACCTT+GGG | + | chr2_4:23776693-23776712 | None:intergenic | 45.0% | |
| CCCAAGGTACATATTGCTCA+CGG | - | chr2_4:23776690-23776709 | Msa0321840:intron | 45.0% | |
| TCCGTGAGCAATATGTACCT+TGG | + | chr2_4:23776694-23776713 | None:intergenic | 45.0% | |
| TGCAAATGGTGAGACTCTTG+TGG | - | chr2_4:23777439-23777458 | Msa0321840:CDS | 45.0% | |
| AAATGGTGAGACTCTTGTGG+TGG | - | chr2_4:23777442-23777461 | Msa0321840:CDS | 45.0% | |
| GGCAGAGAAACCATATGTGA+AGG | - | chr2_4:23777463-23777482 | Msa0321840:CDS | 45.0% | |
| TTTCCCTCAAGATGTGAAGG+AGG | - | chr2_4:23777631-23777650 | Msa0321840:intron | 45.0% | |
| !!! | ATATATATAAAATTTTAAAG+GGG | + | chr2_4:23776176-23776195 | None:intergenic | 5.0% |
| !!! | GAAAAAAATATTATTTTAAA+AGG | + | chr2_4:23776722-23776741 | None:intergenic | 5.0% |
| !! | TAGTAATAAAAAAAAAAAAT+TGG | + | chr2_4:23776850-23776869 | None:intergenic | 5.0% |
| !!! | ATATATATAAAATTTTAAAG+GGG | + | chr2_4:23776176-23776195 | None:intergenic | 5.0% |
| !!! | GAAAAAAATATTATTTTAAA+AGG | + | chr2_4:23776722-23776741 | None:intergenic | 5.0% |
| !! | TAGTAATAAAAAAAAAAAAT+TGG | + | chr2_4:23776850-23776869 | None:intergenic | 5.0% |
| GTGTGACTGTAGACTGTGGA+AGG | + | chr2_4:23775847-23775866 | None:intergenic | 50.0% | |
| AGAGAGGGGTCTTAGTTGTG+TGG | + | chr2_4:23776650-23776669 | None:intergenic | 50.0% | |
| ACACAACTAAGACCCCTCTC+TGG | - | chr2_4:23776649-23776668 | Msa0321840:intron | 50.0% | |
| TTGGTCCACTTCTCCAGAGA+GGG | + | chr2_4:23776665-23776684 | None:intergenic | 50.0% | |
| ! | CAGTCACTTTGCAATGCCTG+CGG | - | chr2_4:23777377-23777396 | Msa0321840:CDS | 50.0% |
| ACCATTTGCAGCTGCTGCAA+GGG | + | chr2_4:23777429-23777448 | None:intergenic | 50.0% | |
| CAGCCTCCTTCACATCTTGA+GGG | + | chr2_4:23777637-23777656 | None:intergenic | 50.0% | |
| GGAGGCTGCTATTCTACTCA+TGG | - | chr2_4:23777649-23777668 | Msa0321840:intron | 50.0% | |
| GTGTGACTGTAGACTGTGGA+AGG | + | chr2_4:23775847-23775866 | None:intergenic | 50.0% | |
| AGAGAGGGGTCTTAGTTGTG+TGG | + | chr2_4:23776650-23776669 | None:intergenic | 50.0% | |
| ACACAACTAAGACCCCTCTC+TGG | - | chr2_4:23776649-23776668 | Msa0321840:intron | 50.0% | |
| TTGGTCCACTTCTCCAGAGA+GGG | + | chr2_4:23776665-23776684 | None:intergenic | 50.0% | |
| ! | CAGTCACTTTGCAATGCCTG+CGG | - | chr2_4:23777377-23777396 | Msa0321840:CDS | 50.0% |
| ACCATTTGCAGCTGCTGCAA+GGG | + | chr2_4:23777429-23777448 | None:intergenic | 50.0% | |
| CAGCCTCCTTCACATCTTGA+GGG | + | chr2_4:23777637-23777656 | None:intergenic | 50.0% | |
| GGAGGCTGCTATTCTACTCA+TGG | - | chr2_4:23777649-23777668 | Msa0321840:intron | 50.0% | |
| ! | AAGACCCCTCTCTGGAGAAG+TGG | - | chr2_4:23776657-23776676 | Msa0321840:intron | 55.0% |
| TGGTCCACTTCTCCAGAGAG+GGG | + | chr2_4:23776664-23776683 | None:intergenic | 55.0% | |
| GTTGGTCCACTTCTCCAGAG+AGG | + | chr2_4:23776666-23776685 | None:intergenic | 55.0% | |
| ! | CTCTGGAGAAGTGGACCAAC+TGG | - | chr2_4:23776666-23776685 | Msa0321840:intron | 55.0% |
| AAGTGGACCAACTGGTCCCA+AGG | - | chr2_4:23776674-23776693 | Msa0321840:intron | 55.0% | |
| CACCATTTGCAGCTGCTGCA+AGG | + | chr2_4:23777430-23777449 | None:intergenic | 55.0% | |
| GCAGCCTCCTTCACATCTTG+AGG | + | chr2_4:23777638-23777657 | None:intergenic | 55.0% | |
| ! | AAGACCCCTCTCTGGAGAAG+TGG | - | chr2_4:23776657-23776676 | Msa0321840:intron | 55.0% |
| TGGTCCACTTCTCCAGAGAG+GGG | + | chr2_4:23776664-23776683 | None:intergenic | 55.0% | |
| GTTGGTCCACTTCTCCAGAG+AGG | + | chr2_4:23776666-23776685 | None:intergenic | 55.0% | |
| ! | CTCTGGAGAAGTGGACCAAC+TGG | - | chr2_4:23776666-23776685 | Msa0321840:intron | 55.0% |
| AAGTGGACCAACTGGTCCCA+AGG | - | chr2_4:23776674-23776693 | Msa0321840:intron | 55.0% | |
| CACCATTTGCAGCTGCTGCA+AGG | + | chr2_4:23777430-23777449 | None:intergenic | 55.0% | |
| GCAGCCTCCTTCACATCTTG+AGG | + | chr2_4:23777638-23777657 | None:intergenic | 55.0% | |
| GCCCTTGCAGCAGCTGCAAA+TGG | - | chr2_4:23777425-23777444 | Msa0321840:CDS | 60.0% | |
| GCCCTTGCAGCAGCTGCAAA+TGG | - | chr2_4:23777425-23777444 | Msa0321840:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 23775833 | 23778003 | 23775833 | ID=Msa0321840;Name=Msa0321840 |
| chr2_4 | mRNA | 23775833 | 23778003 | 23775833 | ID=Msa0321840-mRNA-1;Parent=Msa0321840;Name=Msa0321840-mRNA-1;_AED=0.00;_eAED=0.00;_QI=65|1|1|1|1|1|3|285|302 |
| chr2_4 | exon | 23775833 | 23776456 | 23775833 | ID=Msa0321840-mRNA-1:exon:8591;Parent=Msa0321840-mRNA-1 |
| chr2_4 | exon | 23777141 | 23777482 | 23777141 | ID=Msa0321840-mRNA-1:exon:8590;Parent=Msa0321840-mRNA-1 |
| chr2_4 | exon | 23777711 | 23778003 | 23777711 | ID=Msa0321840-mRNA-1:exon:8589;Parent=Msa0321840-mRNA-1 |
| chr2_4 | five_prime_UTR | 23777939 | 23778003 | 23777939 | ID=Msa0321840-mRNA-1:five_prime_utr;Parent=Msa0321840-mRNA-1 |
| chr2_4 | CDS | 23777711 | 23777938 | 23777711 | ID=Msa0321840-mRNA-1:cds;Parent=Msa0321840-mRNA-1 |
| chr2_4 | CDS | 23777141 | 23777482 | 23777141 | ID=Msa0321840-mRNA-1:cds;Parent=Msa0321840-mRNA-1 |
| chr2_4 | CDS | 23776118 | 23776456 | 23776118 | ID=Msa0321840-mRNA-1:cds;Parent=Msa0321840-mRNA-1 |
| chr2_4 | three_prime_UTR | 23775833 | 23776117 | 23775833 | ID=Msa0321840-mRNA-1:three_prime_utr;Parent=Msa0321840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
