AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0544780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544780 MtrunA17_Chr4g0025361 97.778 180 1 1 1 180 1 177 1.40e-129 360
Msa0544780 MtrunA17_Chr2g0322221 71.649 194 40 7 1 180 3 195 4.95e-85 248
Msa0544780 MtrunA17_Chr4g0063931 56.069 173 67 4 7 173 12 181 2.93e-55 173
Msa0544780 MtrunA17_Chr4g0011841 56.173 162 57 4 11 160 25 184 3.66e-49 158
Msa0544780 MtrunA17_Chr4g0056521 46.500 200 72 6 8 180 17 208 1.23e-47 154
Msa0544780 MtrunA17_Chr5g0413381 52.288 153 65 3 9 155 12 162 6.16e-47 152
Msa0544780 MtrunA17_Chr5g0419871 45.570 158 73 4 1 154 7 155 1.76e-35 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544780 AT1G08465.1 57.895 190 64 6 1 180 1 184 1.09e-68 207
Msa0544780 AT2G26580.2 59.064 171 57 4 1 166 1 163 2.80e-58 180
Msa0544780 AT2G26580.1 59.064 171 57 4 1 166 1 163 2.80e-58 180
Msa0544780 AT2G45190.1 53.061 196 69 6 8 180 22 217 4.32e-55 174
Msa0544780 AT4G00180.1 47.642 212 70 5 7 180 21 229 1.08e-47 155
Msa0544780 AT4G00180.2 45.274 201 69 5 18 180 1 198 2.60e-37 128
Msa0544780 AT1G23420.1 41.818 165 76 3 10 158 20 180 1.37e-36 127
Msa0544780 AT1G23420.2 41.818 165 76 3 10 158 51 211 4.99e-36 126
Msa0544780 AT2G45190.2 60.952 105 30 3 87 180 49 153 7.14e-34 118
Msa0544780 AT1G69180.1 42.000 150 71 2 9 154 19 156 9.11e-32 113

Find 54 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATCTTTGTTGTAGGATT+AGG 0.226265 4_1:+33688569 None:intergenic
TCCACATCTAACTGTTACTA+TGG 0.283760 4_1:+33692988 None:intergenic
GTGGCTGATATCTGGATTAC+TGG 0.287474 4_1:+33689469 None:intergenic
GCCTCCCTGTGGCTGATATC+TGG 0.289400 4_1:+33689461 None:intergenic
AGTCTCCCAATCTTTGTTGT+AGG 0.307481 4_1:+33688563 None:intergenic
CCTAATCCTACAACAAAGAT+TGG 0.310518 4_1:-33688569 Msa0544780:three_prime_UTR
GAAGCAAGCAGCAAGGAAAT+TGG 0.345303 4_1:-33690974 Msa0544780:CDS
GGATTCTACTGATATAAATA+TGG 0.354690 4_1:-33688646 Msa0544780:exon
GGAGGAAATTCAAAGGATTA+AGG 0.360502 4_1:-33689492 Msa0544780:CDS
CATTTCCCTCATATTCACTT+TGG 0.399992 4_1:-33688721 Msa0544780:CDS
ATTTCCCTCATATTCACTTT+GGG 0.416154 4_1:-33688720 Msa0544780:CDS
ATATAACTTACTTAATGAAC+CGG 0.422652 4_1:+33689850 None:intergenic
GGGAGTTGAGGAGGAGGAAA+TGG 0.440779 4_1:+33692917 None:intergenic
TGCTTCCCAAAGTGAATATG+AGG 0.444364 4_1:+33688715 None:intergenic
GGGACTCGTGAAAAGACTAA+TGG 0.445379 4_1:-33688667 Msa0544780:CDS
CGACGAATGGGAGGAATCCT+AGG 0.445790 4_1:+33690890 None:intergenic
TTCATAACAAAAGAAAGAAA+AGG 0.447990 4_1:+33688481 None:intergenic
ATGGTTAACAAACTGCTGTA+TGG 0.448489 4_1:+33693007 None:intergenic
GTGTTCCTTCTGCTTACAAC+CGG 0.449198 4_1:-33689869 Msa0544780:CDS
TGGGAAGCAGCAAGCAAAGT+TGG 0.453770 4_1:-33688701 Msa0544780:CDS
GAGTTTGAGAGTGTGCTTAG+TGG 0.460152 4_1:+33695032 None:intergenic
TCCTCCTCCTCAACTCCCTC+AGG 0.474865 4_1:-33692912 Msa0544780:intron
CTAATCCTACAACAAAGATT+GGG 0.476392 4_1:-33688568 Msa0544780:three_prime_UTR
TACAACAAAGATTGGGAGAC+TGG 0.485449 4_1:-33688561 Msa0544780:three_prime_UTR
CAACAAAATAGCATCATTTG+AGG 0.493091 4_1:-33690933 Msa0544780:CDS
TAAATCTGTGAAAATTAATG+AGG 0.510309 4_1:-33688596 Msa0544780:three_prime_UTR
TCATAACAAAAGAAAGAAAA+GGG 0.511649 4_1:+33688482 None:intergenic
AGAGTGTGACTCACGACGAA+TGG 0.516345 4_1:+33690877 None:intergenic
TAGTAGAGCACGAACATCCT+AGG 0.516780 4_1:-33690907 Msa0544780:CDS
AGAATACTATACCGCTAGAA+TGG 0.519749 4_1:+33694913 None:intergenic
GAGTGTGACTCACGACGAAT+GGG 0.531160 4_1:+33690878 None:intergenic
ACCTGAGGGAGTTGAGGAGG+AGG 0.539948 4_1:+33692911 None:intergenic
TAAACATTGGTGAGAAGCTG+AGG 0.544262 4_1:+33688526 None:intergenic
GGAGGAAATGGCTGAAGTAA+TGG 0.547935 4_1:+33692929 None:intergenic
CAGCAAGCAAAGTTGGATCA+TGG 0.562735 4_1:-33688694 Msa0544780:CDS
GCAAAGTTGGATCATGGTGA+AGG 0.573037 4_1:-33688688 Msa0544780:CDS
AAACATACCTGAGGGAGTTG+AGG 0.577695 4_1:+33692905 None:intergenic
ATGAACCGGTTGTAAGCAGA+AGG 0.582569 4_1:+33689864 None:intergenic
GTAATCCAGATATCAGCCAC+AGG 0.588300 4_1:-33689466 Msa0544780:CDS
TAATTTGCTATCTGTTAACA+TGG 0.605095 4_1:-33692957 Msa0544780:CDS
CAAAGTTGGATCATGGTGAA+GGG 0.606710 4_1:-33688687 Msa0544780:CDS
TCTGTAGGGAGGAAATTCAA+AGG 0.621966 4_1:-33689499 Msa0544780:intron
CTGAGCTGAAAGCCTCCCTG+TGG 0.623676 4_1:+33689450 None:intergenic
CAGGGAGGCTTTCAGCTCAG+CGG 0.634037 4_1:-33689447 Msa0544780:CDS
CATACCTGAGGGAGTTGAGG+AGG 0.635233 4_1:+33692908 None:intergenic
AAGCACACTCTCAAACTCAA+AGG 0.636057 4_1:-33695027 Msa0544780:five_prime_UTR
ACCATAGTAACAGTTAGATG+TGG 0.643235 4_1:-33692989 Msa0544780:CDS
TGTGACTCACGACGAATGGG+AGG 0.645995 4_1:+33690881 None:intergenic
TCATGAAGAAGCAAGCAGCA+AGG 0.659976 4_1:-33690981 Msa0544780:CDS
GCTTCCCAAAGTGAATATGA+GGG 0.661736 4_1:+33688716 None:intergenic
TTTGCTATCTGTTAACATGG+TGG 0.679420 4_1:-33692954 Msa0544780:CDS
TCCAGATATCAGCCACAGGG+AGG 0.683704 4_1:-33689462 Msa0544780:CDS
TAATCCAGATATCAGCCACA+GGG 0.696359 4_1:-33689465 Msa0544780:CDS
CTTCTGCAACACCATTCTAG+CGG 0.715968 4_1:-33694924 Msa0544780:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAATATTATAAA+AGG + chr4_1:33691150-33691169 None:intergenic 0.0%
!!! TTATAATATTTTTTTTTTTT+AGG - chr4_1:33691151-33691170 Msa0544780:intron 0.0%
!!! AAAAAAATTATTTAAAATAA+AGG - chr4_1:33694068-33694087 Msa0544780:intron 0.0%
!! TATATATATATATATATATA+TGG + chr4_1:33694640-33694659 None:intergenic 0.0%
!!! ATTTATTATTATATATTTTT+AGG - chr4_1:33695028-33695047 Msa0544780:five_prime_UTR 0.0%
!!! TTTATTATTATATATTTTTA+GGG - chr4_1:33695029-33695048 Msa0544780:five_prime_UTR 0.0%
!! ATATAATTTACTAATTACAA+AGG + chr4_1:33690166-33690185 None:intergenic 10.0%
!!! AATATTTTTTTTTTTTAGGA+TGG - chr4_1:33691155-33691174 Msa0544780:intron 10.0%
!!! ATATTTTTTTTTTTTAGGAT+GGG - chr4_1:33691156-33691175 Msa0544780:intron 10.0%
!! TAAAATAAATAAATTAGCTA+TGG - chr4_1:33691328-33691347 Msa0544780:intron 10.0%
!! CTATTAAAAAAACATAAATT+AGG + chr4_1:33691446-33691465 None:intergenic 10.0%
!!! TTAATAGTAAAAATGATTTT+TGG - chr4_1:33691459-33691478 Msa0544780:intron 10.0%
!!! GATTAAAAACTTTTTTTAAA+AGG - chr4_1:33691760-33691779 Msa0544780:intron 10.0%
!!! AAAATAGTATTTTTTATTTG+TGG + chr4_1:33692084-33692103 None:intergenic 10.0%
!!! AATTTGTTACTTAAAAATAA+TGG + chr4_1:33692902-33692921 None:intergenic 10.0%
!! AATTATATAAATAGAAACAT+TGG + chr4_1:33693910-33693929 None:intergenic 10.0%
!! GTTTCTATTTATATAATTAA+AGG - chr4_1:33693912-33693931 Msa0544780:intron 10.0%
!!! ATTTTGTAAAATTTTAAATG+GGG + chr4_1:33694406-33694425 None:intergenic 10.0%
!!! CATTTTGTAAAATTTTAAAT+GGG + chr4_1:33694407-33694426 None:intergenic 10.0%
!!! ACATTTTGTAAAATTTTAAA+TGG + chr4_1:33694408-33694427 None:intergenic 10.0%
!! TGTATTACTATATAATAAAA+AGG - chr4_1:33694425-33694444 Msa0544780:intron 10.0%
!! TTTCTCATAAAATATAAGTT+AGG + chr4_1:33688906-33688925 None:intergenic 15.0%
!! AAAAAACAAAACAAAAACAA+AGG + chr4_1:33689219-33689238 None:intergenic 15.0%
!! TCATTATAGAATGTAATTAA+GGG + chr4_1:33689403-33689422 None:intergenic 15.0%
!! AAAGAAACAAAATGTATATA+TGG + chr4_1:33690094-33690113 None:intergenic 15.0%
!! TTAGTGAAATTAATTGTAAA+TGG - chr4_1:33690376-33690395 Msa0544780:intron 15.0%
!!! ATTTTTTTTGAAGTTTGAAA+TGG - chr4_1:33690414-33690433 Msa0544780:intron 15.0%
!!! AAATTAGTAAGTACATATTT+TGG + chr4_1:33690935-33690954 None:intergenic 15.0%
!!! TATTTTTTTTTTTTAGGATG+GGG - chr4_1:33691157-33691176 Msa0544780:intron 15.0%
!!! AGCTAATTTATTTATTTTAG+TGG + chr4_1:33691327-33691346 None:intergenic 15.0%
!! ATTTAATAACAGATTTAGAA+AGG - chr4_1:33691388-33691407 Msa0544780:intron 15.0%
!!! ATTTTTGGTAAAAACAAAAA+GGG - chr4_1:33691474-33691493 Msa0544780:intron 15.0%
!!! TATACTGAAGTTTTATTTTT+TGG - chr4_1:33691603-33691622 Msa0544780:intron 15.0%
!! ATTTATATAGACAAATTCTA+TGG - chr4_1:33691674-33691693 Msa0544780:intron 15.0%
!! AATTAGCAATAGATTAATTA+AGG + chr4_1:33692435-33692454 None:intergenic 15.0%
!!! TAATTTTTGTATTAGCTTTT+TGG - chr4_1:33692606-33692625 Msa0544780:intron 15.0%
!!! TGTTTTGTATATATTCATAT+AGG - chr4_1:33692928-33692947 Msa0544780:CDS 15.0%
!!! TTTTTCTTCATCAATTTATA+TGG - chr4_1:33692969-33692988 Msa0544780:CDS 15.0%
!!! ACACTTTCTTAATATATTTT+TGG - chr4_1:33693845-33693864 Msa0544780:intron 15.0%
!!! CACTTTCTTAATATATTTTT+GGG - chr4_1:33693846-33693865 Msa0544780:intron 15.0%
!! ATGACTAAAAAAAAATCTAA+AGG - chr4_1:33694340-33694359 Msa0544780:intron 15.0%
!! AAAAAAAAAATGAGTATATC+AGG - chr4_1:33694525-33694544 Msa0544780:intron 15.0%
!! ATATATATATATATGGCATA+TGG + chr4_1:33694633-33694652 None:intergenic 15.0%
!! TGAGATCAACTAATATATAA+AGG - chr4_1:33688709-33688728 Msa0544780:CDS 20.0%
!! ATTGATTATAATGCTTGTAT+TGG - chr4_1:33688796-33688815 Msa0544780:intron 20.0%
!!! TTCATAAACTCTAGATTTTT+TGG - chr4_1:33688945-33688964 Msa0544780:intron 20.0%
!! TAATATCAGAATCAGATATT+AGG - chr4_1:33689190-33689209 Msa0544780:intron 20.0%
!! AATATCAGAATCAGATATTA+GGG - chr4_1:33689191-33689210 Msa0544780:intron 20.0%
!! AAAAAGACAAGAAAAAAATC+TGG + chr4_1:33689321-33689340 None:intergenic 20.0%
!! CTCATTATAGAATGTAATTA+AGG + chr4_1:33689404-33689423 None:intergenic 20.0%
!!! ATTTGTTGTAGAAATAAAGA+GGG + chr4_1:33689561-33689580 None:intergenic 20.0%
!!! AATTTGTTGTAGAAATAAAG+AGG + chr4_1:33689562-33689581 None:intergenic 20.0%
!! AGATGATAAAAGATAGAAAT+TGG + chr4_1:33689809-33689828 None:intergenic 20.0%
!! AAACAAAATGTATATATGGT+TGG + chr4_1:33690090-33690109 None:intergenic 20.0%
!! TGTTTCATATTCATCTTATT+TGG - chr4_1:33690574-33690593 Msa0544780:intron 20.0%
!! GTGTATTTAATACATTGAAA+AGG + chr4_1:33690974-33690993 None:intergenic 20.0%
!! GTATATAGTTGAACTTATTA+AGG - chr4_1:33691119-33691138 Msa0544780:intron 20.0%
!! TGACATTGTTATAATCTTAA+AGG + chr4_1:33691258-33691277 None:intergenic 20.0%
!!! GATTTTTGGTAAAAACAAAA+AGG - chr4_1:33691473-33691492 Msa0544780:intron 20.0%
!!! TTTTTTTAAAAGGAAAACGA+AGG - chr4_1:33691770-33691789 Msa0544780:intron 20.0%
!! AATGACATAAAAGAGATATT+TGG + chr4_1:33691812-33691831 None:intergenic 20.0%
!!! ACACTCAAATACTATTTTTA+TGG - chr4_1:33691949-33691968 Msa0544780:intron 20.0%
!!! ATAGTATTTTTTATTTGTGG+TGG + chr4_1:33692081-33692100 None:intergenic 20.0%
!!! GATAGTGAAATAATACTTTT+AGG - chr4_1:33692360-33692379 Msa0544780:intron 20.0%
!!! AAATAATACTTTTAGGAGTT+AGG - chr4_1:33692367-33692386 Msa0544780:intron 20.0%
!! CTAAATTTGAATAAACAAAG+TGG - chr4_1:33692657-33692676 Msa0544780:intron 20.0%
!!! ATATTTATTTTTGAGAGTCA+TGG - chr4_1:33693108-33693127 Msa0544780:intron 20.0%
!! ATATAACTTACTTAATGAAC+CGG + chr4_1:33693614-33693633 None:intergenic 20.0%
!!! TTTGCTTTTTATTTGAAGAA+AGG - chr4_1:33693786-33693805 Msa0544780:intron 20.0%
!!! TTGCTTTTTATTTGAAGAAA+GGG - chr4_1:33693787-33693806 Msa0544780:intron 20.0%
!!! GCTTATATGTAATTTTTGTA+GGG + chr4_1:33693825-33693844 None:intergenic 20.0%
!!! TGCTTATATGTAATTTTTGT+AGG + chr4_1:33693826-33693845 None:intergenic 20.0%
!!! ATAGAAACATTGGTAAATTT+TGG + chr4_1:33693900-33693919 None:intergenic 20.0%
!!! ATTTAAAATAAAGGTGTTTG+AGG - chr4_1:33694077-33694096 Msa0544780:intron 20.0%
!! ACTAAAAAAAAATCTAAAGG+TGG - chr4_1:33694343-33694362 Msa0544780:intron 20.0%
!!! TGATTTTTAGTAGAATACAA+TGG - chr4_1:33694372-33694391 Msa0544780:intron 20.0%
!! ATATGTTTATATATATGCAG+TGG - chr4_1:33694714-33694733 Msa0544780:intron 20.0%
!! TATGTTTATATATATGCAGT+GGG - chr4_1:33694715-33694734 Msa0544780:intron 20.0%
!!! TCATTAATTTTCACAGATTT+AGG + chr4_1:33694866-33694885 None:intergenic 20.0%
!! TAAATCTGTGAAAATTAATG+AGG - chr4_1:33694865-33694884 Msa0544780:intron 20.0%
!! TCATAACAAAAGAAAGAAAA+GGG + chr4_1:33694982-33695001 None:intergenic 20.0%
!! TTCATAACAAAAGAAAGAAA+AGG + chr4_1:33694983-33695002 None:intergenic 20.0%
!!! ATATATTTTTAGGGTTACTA+TGG - chr4_1:33695038-33695057 Msa0544780:five_prime_UTR 20.0%
! GAGAAAAAGAAAAATGTCAA+TGG - chr4_1:33688474-33688493 Msa0544780:three_prime_UTR 25.0%
!! CTAATTTGCCAAATTAGATA+TGG + chr4_1:33688658-33688677 None:intergenic 25.0%
! TATTGGAAAATCAAGCTTAT+AGG - chr4_1:33688813-33688832 Msa0544780:intron 25.0%
!! GTAAATGTTTTCACATTTTG+AGG - chr4_1:33689502-33689521 Msa0544780:intron 25.0%
!!! AATTTGCTATGATATGTGAA+AGG + chr4_1:33689614-33689633 None:intergenic 25.0%
! TTAATCTACTTTCTCAAAAG+AGG + chr4_1:33689644-33689663 None:intergenic 25.0%
! TTGAGAAAGTAGATTAAATC+TGG - chr4_1:33689647-33689666 Msa0544780:intron 25.0%
! TTGTATAGAGTAATAACTAG+TGG - chr4_1:33689712-33689731 Msa0544780:intron 25.0%
!!! TAGAGTTGATGAAAAACAAA+TGG + chr4_1:33690124-33690143 None:intergenic 25.0%
! GCTGAAATATCTTAAAACTT+AGG + chr4_1:33690197-33690216 None:intergenic 25.0%
!!! TTTTAAGATATTTCAGCCTT+TGG - chr4_1:33690200-33690219 Msa0544780:intron 25.0%
!! TGTTTGAAGAATGTATGTTT+TGG - chr4_1:33690242-33690261 Msa0544780:intron 25.0%
!! TGGTGTATGAATTTTCTTTT+AGG - chr4_1:33690262-33690281 Msa0544780:intron 25.0%
! TTAGGAATTCCATCTATATA+CGG - chr4_1:33690280-33690299 Msa0544780:intron 25.0%
! GTGAAATTAATTGTAAATGG+TGG - chr4_1:33690379-33690398 Msa0544780:intron 25.0%
!!! TTTTGAAGTTTGAAATGGAT+TGG - chr4_1:33690419-33690438 Msa0544780:intron 25.0%
!!! TAATTTGCTATCTGTTAACA+TGG - chr4_1:33690504-33690523 Msa0544780:intron 25.0%
! TAAGTTCAACTATATACACT+AGG + chr4_1:33691116-33691135 None:intergenic 25.0%
! TGTTATAATCTTAAAGGAGA+AGG + chr4_1:33691252-33691271 None:intergenic 25.0%
!!! TATTTATTTTAGTGGTGTGT+TGG + chr4_1:33691319-33691338 None:intergenic 25.0%
!! CTTTCTCATTTTCTCATTAT+AGG - chr4_1:33691365-33691384 Msa0544780:intron 25.0%
!! ATTTTATGTGTAAGAACCAA+TGG - chr4_1:33691506-33691525 Msa0544780:intron 25.0%
! AACTTCAGTATAATGTTTGA+AGG + chr4_1:33691595-33691614 None:intergenic 25.0%
!!! TATTTTTTATTTGTGGTGGT+CGG + chr4_1:33692077-33692096 None:intergenic 25.0%
! GGTAAATAGTATATACACAT+TGG + chr4_1:33692266-33692285 None:intergenic 25.0%
!!! TACTATTTACCACTTTTGTT+AGG - chr4_1:33692275-33692294 Msa0544780:intron 25.0%
! TGATGCTTAATTTATTGAGT+CGG - chr4_1:33692873-33692892 Msa0544780:intron 25.0%
! AGAAAAAAAATTCCCAAACT+GGG + chr4_1:33692956-33692975 None:intergenic 25.0%
! AAGAAAAAAAATTCCCAAAC+TGG + chr4_1:33692957-33692976 None:intergenic 25.0%
! GAGTCATGGTAATTAATTAT+TGG - chr4_1:33693122-33693141 Msa0544780:intron 25.0%
! TGGTAATTAATTATTGGCAT+TGG - chr4_1:33693128-33693147 Msa0544780:intron 25.0%
! TGGTAATTGTAAACTATTAC+TGG - chr4_1:33693148-33693167 Msa0544780:intron 25.0%
!!! ATGGTTAATTTAGGTTTTCT+TGG + chr4_1:33693259-33693278 None:intergenic 25.0%
! CTTGAAGAAATGGTTAATTT+AGG + chr4_1:33693268-33693287 None:intergenic 25.0%
! TTTGACAAACTAGTAGATTA+AGG + chr4_1:33693391-33693410 None:intergenic 25.0%
!! TACTAGTTTGTCAAAAAATG+AGG - chr4_1:33693396-33693415 Msa0544780:intron 25.0%
! TATGGTTGAGCAAATTAAAA+AGG + chr4_1:33694615-33694634 None:intergenic 25.0%
! GGATTCTACTGATATAAATA+TGG - chr4_1:33694815-33694834 Msa0544780:intron 25.0%
! GTCAAACATAGAAAAAACAA+AGG + chr4_1:33694844-33694863 None:intergenic 25.0%
AGAAAACACAAAAGAAGAGA+TGG + chr4_1:33688580-33688599 None:intergenic 30.0%
! AAATTAGATATGGTGGTGAA+AGG + chr4_1:33688648-33688667 None:intergenic 30.0%
TTTCACCACCATATCTAATT+TGG - chr4_1:33688647-33688666 Msa0544780:exon 30.0%
ATTTGCCAAATTAGATATGG+TGG + chr4_1:33688655-33688674 None:intergenic 30.0%
TTGATCTCATATGATCTTGA+TGG + chr4_1:33688698-33688717 None:intergenic 30.0%
GCATTATAATCAATACGTCT+TGG + chr4_1:33688790-33688809 None:intergenic 30.0%
AATCAAGCTTATAGGAACAT+TGG - chr4_1:33688821-33688840 Msa0544780:intron 30.0%
GAAAATTCACTTCAACATGA+TGG + chr4_1:33688858-33688877 None:intergenic 30.0%
! GATTTTCAACGAACAAAGTT+AGG - chr4_1:33689018-33689037 Msa0544780:intron 30.0%
TTTGCTTGATCTCTCAAATT+AGG + chr4_1:33689049-33689068 None:intergenic 30.0%
TAGCTAAAAGTCCATGATTA+GGG - chr4_1:33689166-33689185 Msa0544780:intron 30.0%
TCTGATATTAACCCTAATCA+TGG + chr4_1:33689180-33689199 None:intergenic 30.0%
AGAATGTAATTAAGGGATCA+AGG + chr4_1:33689396-33689415 None:intergenic 30.0%
! TATAATGAGAGTGTGAATGA+AGG - chr4_1:33689415-33689434 Msa0544780:intron 30.0%
ATAACTAGTGGTTAAGACTT+TGG - chr4_1:33689724-33689743 Msa0544780:intron 30.0%
TACAATTGAAAATGTGTGTG+TGG + chr4_1:33689958-33689977 None:intergenic 30.0%
! ACACACATTTTCAATTGTAG+TGG - chr4_1:33689959-33689978 Msa0544780:intron 30.0%
AAGATGATAAATAAGCTAGC+AGG + chr4_1:33690060-33690079 None:intergenic 30.0%
!! AGTTGATGAAAAACAAATGG+AGG + chr4_1:33690121-33690140 None:intergenic 30.0%
TGAATATGAAACATACCTGA+GGG + chr4_1:33690567-33690586 None:intergenic 30.0%
ATGAATATGAAACATACCTG+AGG + chr4_1:33690568-33690587 None:intergenic 30.0%
TTGATACCACATCAATTTGT+TGG + chr4_1:33690759-33690778 None:intergenic 30.0%
TATTATAGCAACTGCATGTA+TGG + chr4_1:33690814-33690833 None:intergenic 30.0%
ACATGCAGTTGCTATAATAA+AGG - chr4_1:33690815-33690834 Msa0544780:intron 30.0%
ATCTTCAAGAATTATCACGA+AGG + chr4_1:33690848-33690867 None:intergenic 30.0%
!! AGTACATATTTTGGAAGTCA+CGG + chr4_1:33690926-33690945 None:intergenic 30.0%
TTTGTCATGTTCATGTAACA+TGG + chr4_1:33691073-33691092 None:intergenic 30.0%
!!! TTTTTTTTTTAGGATGGGGA+AGG - chr4_1:33691161-33691180 Msa0544780:intron 30.0%
!!! TTTTTTTTTAGGATGGGGAA+GGG - chr4_1:33691162-33691181 Msa0544780:intron 30.0%
TTGGACTTTAATTCAATGAG+AGG + chr4_1:33691300-33691319 None:intergenic 30.0%
TTAGGGAGAGAAATTTAGAA+CGG + chr4_1:33691428-33691447 None:intergenic 30.0%
!! AACCAATGGTTTGTTTCTTT+AGG - chr4_1:33691520-33691539 Msa0544780:intron 30.0%
TACCTAAAGAAACAAACCAT+TGG + chr4_1:33691525-33691544 None:intergenic 30.0%
TATATAAATTAGAGCACAGG+TGG + chr4_1:33691663-33691682 None:intergenic 30.0%
GTCTATATAAATTAGAGCAC+AGG + chr4_1:33691666-33691685 None:intergenic 30.0%
GGATAATGCATAAAATATGC+AGG - chr4_1:33692036-33692055 Msa0544780:intron 30.0%
!!! ATTTTTTATTTGTGGTGGTC+GGG + chr4_1:33692076-33692095 None:intergenic 30.0%
CAATGTCAAAAAAGCTTCTA+AGG + chr4_1:33692241-33692260 None:intergenic 30.0%
CAACAAAATAGCATCATTTG+AGG - chr4_1:33692528-33692547 Msa0544780:intron 30.0%
ATTTGTCTTGCTTGAAGAAA+TGG + chr4_1:33693278-33693297 None:intergenic 30.0%
TCTTCAAGCAAGACAAATAA+AGG - chr4_1:33693280-33693299 Msa0544780:intron 30.0%
!! AAAATAAAGGTGTTTGAGGT+TGG - chr4_1:33694081-33694100 Msa0544780:intron 30.0%
GTATTCTACTAAAAATCACG+AGG + chr4_1:33694370-33694389 None:intergenic 30.0%
ATGCTATCAAATAAGCAAAG+TGG - chr4_1:33694549-33694568 Msa0544780:intron 30.0%
ATTTCCCTCATATTCACTTT+GGG - chr4_1:33694741-33694760 Msa0544780:intron 30.0%
CTAATCCTACAACAAAGATT+GGG - chr4_1:33694893-33694912 Msa0544780:intron 30.0%
AGAATACTATACCGCTAGAA+TGG + chr4_1:33688551-33688570 None:intergenic 35.0%
TGGTAAGAAGCTTGTATATG+TGG - chr4_1:33688965-33688984 Msa0544780:intron 35.0%
AGAAGCTTGTATATGTGGTA+TGG - chr4_1:33688970-33688989 Msa0544780:intron 35.0%
CATAGCTAGAGTCAAATTTG+TGG - chr4_1:33689141-33689160 Msa0544780:intron 35.0%
!! CTAATCATGGACTTTTAGCT+AGG + chr4_1:33689167-33689186 None:intergenic 35.0%
CTAGCTAAAAGTCCATGATT+AGG - chr4_1:33689165-33689184 Msa0544780:intron 35.0%
TTCTGTACAAATCCATGTGA+TGG - chr4_1:33689340-33689359 Msa0544780:intron 35.0%
AATTAAGGGATCAAGGACAT+AGG + chr4_1:33689389-33689408 None:intergenic 35.0%
AGAGATGAAAATGACTTGAC+TGG + chr4_1:33689761-33689780 None:intergenic 35.0%
!! TGGTTTGCTCATTGTGTTAA+AGG + chr4_1:33689789-33689808 None:intergenic 35.0%
!! AGAGAGAGTCTACTTTTAAG+GGG + chr4_1:33689993-33690012 None:intergenic 35.0%
!! GAGAGAGAGTCTACTTTTAA+GGG + chr4_1:33689994-33690013 None:intergenic 35.0%
!! TGAGAGAGAGTCTACTTTTA+AGG + chr4_1:33689995-33690014 None:intergenic 35.0%
! TCAACTCTATGCTTTTGCTT+TGG - chr4_1:33690135-33690154 Msa0544780:intron 35.0%
AAACCAATCAACAGTACCAA+AGG + chr4_1:33690219-33690238 None:intergenic 35.0%
CAAATGACACCGTATATAGA+TGG + chr4_1:33690292-33690311 None:intergenic 35.0%
ATGGTTAACAAACTGCTGTA+TGG + chr4_1:33690457-33690476 None:intergenic 35.0%
ACCATAGTAACAGTTAGATG+TGG - chr4_1:33690472-33690491 Msa0544780:intron 35.0%
TCCACATCTAACTGTTACTA+TGG + chr4_1:33690476-33690495 None:intergenic 35.0%
! TTTGCTATCTGTTAACATGG+TGG - chr4_1:33690507-33690526 Msa0544780:intron 35.0%
ATTTCCTCTAACCTCAAAGA+GGG + chr4_1:33690602-33690621 None:intergenic 35.0%
TTAGGACACTCATTAGCAAA+AGG + chr4_1:33690895-33690914 None:intergenic 35.0%
! TCTATGTTTGCGGAGATTTT+AGG + chr4_1:33691000-33691019 None:intergenic 35.0%
TGTGAACTCATCTATGTTTG+CGG + chr4_1:33691010-33691029 None:intergenic 35.0%
ACACTATCCCAATACAAAGA+GGG - chr4_1:33691041-33691060 Msa0544780:intron 35.0%
!!! TTTTTTTTAGGATGGGGAAG+GGG - chr4_1:33691163-33691182 Msa0544780:intron 35.0%
GGAGAAGGTTCAAATATTCA+AGG + chr4_1:33691237-33691256 None:intergenic 35.0%
!!! TTTTTTATTTGTGGTGGTCG+GGG + chr4_1:33692075-33692094 None:intergenic 35.0%
!! TACTTTTAGGAGTTAGGACT+TGG - chr4_1:33692373-33692392 Msa0544780:intron 35.0%
!! ACTTTTAGGAGTTAGGACTT+GGG - chr4_1:33692374-33692393 Msa0544780:intron 35.0%
!! TGAATTATGTGCTGTTTCTG+TGG + chr4_1:33692463-33692482 None:intergenic 35.0%
TGTGTGATTGTTGTCATTCA+GGG + chr4_1:33692701-33692720 None:intergenic 35.0%
ATGTGTGATTGTTGTCATTC+AGG + chr4_1:33692702-33692721 None:intergenic 35.0%
ATTCATATAGGTTCCCAGTT+TGG - chr4_1:33692940-33692959 Msa0544780:CDS 35.0%
TTCATATAGGTTCCCAGTTT+GGG - chr4_1:33692941-33692960 Msa0544780:CDS 35.0%
CTTCATCAATTTATATGGCC+CGG - chr4_1:33692974-33692993 Msa0544780:CDS 35.0%
GACAGCAATGAATTAAGGAT+GGG + chr4_1:33693036-33693055 None:intergenic 35.0%
TGACAGCAATGAATTAAGGA+TGG + chr4_1:33693037-33693056 None:intergenic 35.0%
AGGATGACAGCAATGAATTA+AGG + chr4_1:33693041-33693060 None:intergenic 35.0%
AAGTGAAGTGACATGAACAA+TGG - chr4_1:33693205-33693224 Msa0544780:intron 35.0%
CAAGACAAATAAAGGACTCT+GGG - chr4_1:33693288-33693307 Msa0544780:intron 35.0%
!! AAAGGACTCTGGGATAAAAT+TGG - chr4_1:33693298-33693317 Msa0544780:intron 35.0%
! ATGTCTTTTCTCTATAGCTG+TGG + chr4_1:33693571-33693590 None:intergenic 35.0%
!! TCAACACTACTATTTTCGAG+AGG - chr4_1:33693732-33693751 Msa0544780:intron 35.0%
GGAGGAAATTCAAAGGATTA+AGG - chr4_1:33693969-33693988 Msa0544780:intron 35.0%
! AACGTCGATTAACATGGTAA+AGG - chr4_1:33694105-33694124 Msa0544780:intron 35.0%
AATTAACATGCCCTTCATGT+AGG - chr4_1:33694282-33694301 Msa0544780:intron 35.0%
ATTAACATGCCCTTCATGTA+GGG - chr4_1:33694283-33694302 Msa0544780:intron 35.0%
TAATATCGACCCTACATGAA+GGG + chr4_1:33694295-33694314 None:intergenic 35.0%
ATAATATCGACCCTACATGA+AGG + chr4_1:33694296-33694315 None:intergenic 35.0%
GGGTCGATATTATTGTTCAA+AGG - chr4_1:33694303-33694322 Msa0544780:intron 35.0%
CATTTCCCTCATATTCACTT+TGG - chr4_1:33694740-33694759 Msa0544780:intron 35.0%
! CCAATCTTTGTTGTAGGATT+AGG + chr4_1:33694895-33694914 None:intergenic 35.0%
CCTAATCCTACAACAAAGAT+TGG - chr4_1:33694892-33694911 Msa0544780:intron 35.0%
AAGCACACTCTCAAACTCAA+AGG - chr4_1:33688434-33688453 Msa0544780:three_prime_UTR 40.0%
AAATCATGCTTGCCATCACA+TGG + chr4_1:33689355-33689374 None:intergenic 40.0%
! CTTGATGCTTTTCAGCACTA+TGG + chr4_1:33689477-33689496 None:intergenic 40.0%
ACTAGTGGTTAAGACTTTGG+TGG - chr4_1:33689727-33689746 Msa0544780:intron 40.0%
!! CACTTTTTACTGACACTGCA+AGG + chr4_1:33689834-33689853 None:intergenic 40.0%
!! AGAGAGTCTACTTTTAAGGG+GGG + chr4_1:33689991-33690010 None:intergenic 40.0%
!! GAGAGAGTCTACTTTTAAGG+GGG + chr4_1:33689992-33690011 None:intergenic 40.0%
ATGTATATATGGTTGGCAGC+AGG + chr4_1:33690083-33690102 None:intergenic 40.0%
AGCACAAGACGAACAAAGAT+CGG + chr4_1:33690331-33690350 None:intergenic 40.0%
!! GAAGTTTGAAATGGATTGGC+AGG - chr4_1:33690423-33690442 Msa0544780:intron 40.0%
! CTTATTTGGTTCCCTCTTTG+AGG - chr4_1:33690588-33690607 Msa0544780:intron 40.0%
CATTTCCTCTAACCTCAAAG+AGG + chr4_1:33690603-33690622 None:intergenic 40.0%
!! CTCTTTGAGGTTAGAGGAAA+TGG - chr4_1:33690601-33690620 Msa0544780:intron 40.0%
TGAGGTTAGAGGAAATGGAA+TGG - chr4_1:33690606-33690625 Msa0544780:intron 40.0%
TCACGACCAACAAATTGATG+TGG - chr4_1:33690750-33690769 Msa0544780:intron 40.0%
AACTGCATGTATGGTAAGTG+GGG + chr4_1:33690805-33690824 None:intergenic 40.0%
CAACTGCATGTATGGTAAGT+GGG + chr4_1:33690806-33690825 None:intergenic 40.0%
TGTATTGGGATAGTGTCTCT+TGG + chr4_1:33691037-33691056 None:intergenic 40.0%
GACACTATCCCAATACAAAG+AGG - chr4_1:33691040-33691059 Msa0544780:intron 40.0%
ATGCATAAAATATGCAGGCC+TGG - chr4_1:33692041-33692060 Msa0544780:intron 40.0%
TGCATAAAATATGCAGGCCT+GGG - chr4_1:33692042-33692061 Msa0544780:intron 40.0%
CATCACTCTCCTAACAAAAG+TGG + chr4_1:33692287-33692306 None:intergenic 40.0%
CAAAGTGGCAACTACTAACT+AGG - chr4_1:33692672-33692691 Msa0544780:intron 40.0%
TGTGATTGTTGTCATTCAGG+GGG + chr4_1:33692699-33692718 None:intergenic 40.0%
GTGTGATTGTTGTCATTCAG+GGG + chr4_1:33692700-33692719 None:intergenic 40.0%
TAGCTAGCATAGAGTAGCAT+AGG - chr4_1:33692773-33692792 Msa0544780:intron 40.0%
GTTACGTAACGTCACAATCT+TGG + chr4_1:33693005-33693024 None:intergenic 40.0%
TGCATGCATGTGTTCTACTA+GGG + chr4_1:33693067-33693086 None:intergenic 40.0%
ATGCATGCATGTGTTCTACT+AGG + chr4_1:33693068-33693087 None:intergenic 40.0%
CTGGTACTCCAGTTATTGAT+CGG - chr4_1:33693167-33693186 Msa0544780:intron 40.0%
AGCAAACTCCGATCAATAAC+TGG + chr4_1:33693178-33693197 None:intergenic 40.0%
GCAAGACAAATAAAGGACTC+TGG - chr4_1:33693287-33693306 Msa0544780:intron 40.0%
! TTCACCCAATCTTGTTTGCT+AGG - chr4_1:33693679-33693698 Msa0544780:intron 40.0%
TGCACCTAGCAAACAAGATT+GGG + chr4_1:33693686-33693705 None:intergenic 40.0%
TTGCACCTAGCAAACAAGAT+TGG + chr4_1:33693687-33693706 None:intergenic 40.0%
TTCCCTATTGTCTTGTCTGT+AGG - chr4_1:33693947-33693966 Msa0544780:intron 40.0%
TCCCTATTGTCTTGTCTGTA+GGG - chr4_1:33693948-33693967 Msa0544780:intron 40.0%
TCCCTACAGACAAGACAATA+GGG + chr4_1:33693952-33693971 None:intergenic 40.0%
TCTGTAGGGAGGAAATTCAA+AGG - chr4_1:33693962-33693981 Msa0544780:intron 40.0%
TAATCCAGATATCAGCCACA+GGG - chr4_1:33693996-33694015 Msa0544780:intron 40.0%
! GTTGGAAACGTCGATTAACA+TGG - chr4_1:33694099-33694118 Msa0544780:intron 40.0%
CAAGACGAACACGATGAAAA+CGG - chr4_1:33694139-33694158 Msa0544780:intron 40.0%
GCTTCCCAAAGTGAATATGA+GGG + chr4_1:33694748-33694767 None:intergenic 40.0%
TGCTTCCCAAAGTGAATATG+AGG + chr4_1:33694749-33694768 None:intergenic 40.0%
CAAAGTTGGATCATGGTGAA+GGG - chr4_1:33694774-33694793 Msa0544780:intron 40.0%
! AGTCTCCCAATCTTTGTTGT+AGG + chr4_1:33694901-33694920 None:intergenic 40.0%
TACAACAAAGATTGGGAGAC+TGG - chr4_1:33694900-33694919 Msa0544780:intron 40.0%
TAAACATTGGTGAGAAGCTG+AGG + chr4_1:33694938-33694957 None:intergenic 40.0%
! GAGTTTGAGAGTGTGCTTAG+TGG + chr4_1:33688432-33688451 None:intergenic 45.0%
CTTCTGCAACACCATTCTAG+CGG - chr4_1:33688537-33688556 Msa0544780:three_prime_UTR 45.0%
! AGATATGGTGGTGAAAGGTG+TGG + chr4_1:33688643-33688662 None:intergenic 45.0%
! GATGCTTTTCAGCACTATGG+TGG + chr4_1:33689474-33689493 None:intergenic 45.0%
!! GAGAGTCTACTTTTAAGGGG+GGG + chr4_1:33689990-33690009 None:intergenic 45.0%
ATAAGCTAGCAGGAGTGAGA+AGG + chr4_1:33690050-33690069 None:intergenic 45.0%
CAGCCTTTGGTACTGTTGAT+TGG - chr4_1:33690213-33690232 Msa0544780:intron 45.0%
GGAGGAAATGGCTGAAGTAA+TGG + chr4_1:33690535-33690554 None:intergenic 45.0%
AAACATACCTGAGGGAGTTG+AGG + chr4_1:33690559-33690578 None:intergenic 45.0%
GCAACTGCATGTATGGTAAG+TGG + chr4_1:33690807-33690826 None:intergenic 45.0%
GAAGTCACGGACAATGTCTT+AGG + chr4_1:33690913-33690932 None:intergenic 45.0%
GTCTGCTCCCTCTTTGTATT+GGG + chr4_1:33691051-33691070 None:intergenic 45.0%
ATCCAGTACCTTTCTGGACA+GGG + chr4_1:33691701-33691720 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr4_1:33691978-33691997 Msa0544780:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr4_1:33691978-33691997 Msa0544780:intron 45.0%
GCATAAAATATGCAGGCCTG+GGG - chr4_1:33692043-33692062 Msa0544780:intron 45.0%
TCATGAAGAAGCAAGCAGCA+AGG - chr4_1:33692480-33692499 Msa0544780:intron 45.0%
GAAGCAAGCAGCAAGGAAAT+TGG - chr4_1:33692487-33692506 Msa0544780:intron 45.0%
TAGTAGAGCACGAACATCCT+AGG - chr4_1:33692554-33692573 Msa0544780:intron 45.0%
GTGATTGTTGTCATTCAGGG+GGG + chr4_1:33692698-33692717 None:intergenic 45.0%
GTAACGTCACAATCTTGGAG+GGG + chr4_1:33693000-33693019 None:intergenic 45.0%
CGTAACGTCACAATCTTGGA+GGG + chr4_1:33693001-33693020 None:intergenic 45.0%
ACGTAACGTCACAATCTTGG+AGG + chr4_1:33693002-33693021 None:intergenic 45.0%
CATGTGTTCTACTAGGGCAT+AGG + chr4_1:33693061-33693080 None:intergenic 45.0%
GTGTTCCTTCTGCTTACAAC+CGG - chr4_1:33693592-33693611 Msa0544780:intron 45.0%
ATGAACCGGTTGTAAGCAGA+AGG + chr4_1:33693600-33693619 None:intergenic 45.0%
CTCCCTACAGACAAGACAAT+AGG + chr4_1:33693953-33693972 None:intergenic 45.0%
CTATTGTCTTGTCTGTAGGG+AGG - chr4_1:33693951-33693970 Msa0544780:intron 45.0%
GTGGCTGATATCTGGATTAC+TGG + chr4_1:33693995-33694014 None:intergenic 45.0%
GTAATCCAGATATCAGCCAC+AGG - chr4_1:33693995-33694014 Msa0544780:intron 45.0%
GAACACGATGAAAACGGACA+CGG - chr4_1:33694145-33694164 Msa0544780:intron 45.0%
AACACGATGAAAACGGACAC+GGG - chr4_1:33694146-33694165 Msa0544780:intron 45.0%
TGCTAGGGTTTGATGGAGAA+TGG + chr4_1:33694184-33694203 None:intergenic 45.0%
TCTCCATCAAACCCTAGCAT+AGG - chr4_1:33694185-33694204 Msa0544780:intron 45.0%
CTCCATCAAACCCTAGCATA+GGG - chr4_1:33694186-33694205 Msa0544780:intron 45.0%
CAGCAAGCAAAGTTGGATCA+TGG - chr4_1:33694767-33694786 Msa0544780:intron 45.0%
GCAAAGTTGGATCATGGTGA+AGG - chr4_1:33694773-33694792 Msa0544780:intron 45.0%
GGGACTCGTGAAAAGACTAA+TGG - chr4_1:33694794-33694813 Msa0544780:intron 45.0%
!!! TTTTTAAAAATCAAAATATA+TGG - chr4_1:33689237-33689256 Msa0544780:intron 5.0%
!! AAAAATAAAACAAATAAAAA+AGG - chr4_1:33690779-33690798 Msa0544780:intron 5.0%
!! TATTAAAAAAACATAAATTA+GGG + chr4_1:33691445-33691464 None:intergenic 5.0%
!! ATATAAAAAAAAAAAGAAAA+AGG + chr4_1:33691728-33691747 None:intergenic 5.0%
!!! AAAATATTTTTATAAAAAAC+TGG + chr4_1:33692117-33692136 None:intergenic 5.0%
!! TTTGAATATTAAATTTATAT+TGG + chr4_1:33693525-33693544 None:intergenic 5.0%
!!! ATAAATATTATTTTAAACAT+TGG + chr4_1:33694951-33694970 None:intergenic 5.0%
GTTCGTCTTGTGCTGAGACT+TGG - chr4_1:33690337-33690356 Msa0544780:intron 50.0%
!! GGTTCCCTCTTTGAGGTTAG+AGG - chr4_1:33690595-33690614 Msa0544780:intron 50.0%
GGTCTGCTCCCTCTTTGTAT+TGG + chr4_1:33691052-33691071 None:intergenic 50.0%
TCTATGGTCCCTGTCCAGAA+AGG - chr4_1:33691690-33691709 Msa0544780:intron 50.0%
GATCCAGTACCTTTCTGGAC+AGG + chr4_1:33691702-33691721 None:intergenic 50.0%
GGATCGATCCAGTACCTTTC+TGG + chr4_1:33691707-33691726 None:intergenic 50.0%
CCAACTGAGCTAAGCTCACA+AGG + chr4_1:33691976-33691995 None:intergenic 50.0%
CCTTGTGAGCTTAGCTCAGT+TGG - chr4_1:33691973-33691992 Msa0544780:intron 50.0%
CATCGTGAGCTTAGCTCAGT+TGG - chr4_1:33692010-33692029 Msa0544780:intron 50.0%
GAGTGTGACTCACGACGAAT+GGG + chr4_1:33692586-33692605 None:intergenic 50.0%
AGAGTGTGACTCACGACGAA+TGG + chr4_1:33692587-33692606 None:intergenic 50.0%
CTCCCTATGCTAGGGTTTGA+TGG + chr4_1:33694191-33694210 None:intergenic 50.0%
AACCCTAGCATAGGGAGTGA+AGG - chr4_1:33694194-33694213 Msa0544780:intron 50.0%
CTCCTTCACTCCCTATGCTA+GGG + chr4_1:33694199-33694218 None:intergenic 50.0%
ACTCCTTCACTCCCTATGCT+AGG + chr4_1:33694200-33694219 None:intergenic 50.0%
GGGAGTGAAGGAGTAATGCA+AGG - chr4_1:33694206-33694225 Msa0544780:intron 50.0%
TGGGAAGCAGCAAGCAAAGT+TGG - chr4_1:33694760-33694779 Msa0544780:intron 50.0%
GGGAGTTGAGGAGGAGGAAA+TGG + chr4_1:33690547-33690566 None:intergenic 55.0%
CATACCTGAGGGAGTTGAGG+AGG + chr4_1:33690556-33690575 None:intergenic 55.0%
! GTCCCTGTCCAGAAAGGTAC+TGG - chr4_1:33691696-33691715 Msa0544780:intron 55.0%
CGACGAATGGGAGGAATCCT+AGG + chr4_1:33692574-33692593 None:intergenic 55.0%
TGTGACTCACGACGAATGGG+AGG + chr4_1:33692583-33692602 None:intergenic 55.0%
TCCAGATATCAGCCACAGGG+AGG - chr4_1:33693999-33694018 Msa0544780:intron 55.0%
ACGATGAAAACGGACACGGG+AGG - chr4_1:33694149-33694168 Msa0544780:intron 55.0%
TCCTCCTCCTCAACTCCCTC+AGG - chr4_1:33690549-33690568 Msa0544780:intron 60.0%
ACCTGAGGGAGTTGAGGAGG+AGG + chr4_1:33690553-33690572 None:intergenic 60.0%
GTCACAATCTTGGAGGGGCC+GGG + chr4_1:33692995-33693014 None:intergenic 60.0%
CGTCACAATCTTGGAGGGGC+CGG + chr4_1:33692996-33693015 None:intergenic 60.0%
GCCTCCCTGTGGCTGATATC+TGG + chr4_1:33694003-33694022 None:intergenic 60.0%
CTGAGCTGAAAGCCTCCCTG+TGG + chr4_1:33694014-33694033 None:intergenic 60.0%
CAGGGAGGCTTTCAGCTCAG+CGG - chr4_1:33694014-33694033 Msa0544780:intron 60.0%
GTGGTCGGGGTTCGAACCCC+AGG + chr4_1:33692062-33692081 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 33688418 33695065 33688418 ID=Msa0544780;Name=Msa0544780
chr4_1 mRNA 33688418 33695065 33688418 ID=Msa0544780-mRNA-1;Parent=Msa0544780;Name=Msa0544780-mRNA-1;_AED=0.05;_eAED=0.05;_QI=69|1|1|1|1|1|6|239|180
chr4_1 exon 33688418 33688749 33688418 ID=Msa0544780-mRNA-1:exon:8669;Parent=Msa0544780-mRNA-1
chr4_1 exon 33689439 33689514 33689439 ID=Msa0544780-mRNA-1:exon:8668;Parent=Msa0544780-mRNA-1
chr4_1 exon 33689861 33689909 33689861 ID=Msa0544780-mRNA-1:exon:8667;Parent=Msa0544780-mRNA-1
chr4_1 exon 33690891 33691017 33690891 ID=Msa0544780-mRNA-1:exon:8666;Parent=Msa0544780-mRNA-1
chr4_1 exon 33692913 33693038 33692913 ID=Msa0544780-mRNA-1:exon:8665;Parent=Msa0544780-mRNA-1
chr4_1 exon 33694925 33695065 33694925 ID=Msa0544780-mRNA-1:exon:8664;Parent=Msa0544780-mRNA-1
chr4_1 five_prime_UTR 33694997 33695065 33694997 ID=Msa0544780-mRNA-1:five_prime_utr;Parent=Msa0544780-mRNA-1
chr4_1 CDS 33694925 33694996 33694925 ID=Msa0544780-mRNA-1:cds;Parent=Msa0544780-mRNA-1
chr4_1 CDS 33692913 33693038 33692913 ID=Msa0544780-mRNA-1:cds;Parent=Msa0544780-mRNA-1
chr4_1 CDS 33690891 33691017 33690891 ID=Msa0544780-mRNA-1:cds;Parent=Msa0544780-mRNA-1
chr4_1 CDS 33689861 33689909 33689861 ID=Msa0544780-mRNA-1:cds;Parent=Msa0544780-mRNA-1
chr4_1 CDS 33689439 33689514 33689439 ID=Msa0544780-mRNA-1:cds;Parent=Msa0544780-mRNA-1
chr4_1 CDS 33688657 33688749 33688657 ID=Msa0544780-mRNA-1:cds;Parent=Msa0544780-mRNA-1
chr4_1 three_prime_UTR 33688418 33688656 33688418 ID=Msa0544780-mRNA-1:three_prime_utr;Parent=Msa0544780-mRNA-1
Gene Sequence

>Msa0544780

ATGTCAATGGACATGATTGCAACAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAATGTTCCATACAGCAGTTTGTTAACCATAGTAACAGTTAGATGTGGACATTGTGCTAATTTGCTATCTGTTAACATGGTGGCACCATTACTTCAGCCATTTCCTCCTCCTCAACTCCCTCAGAAACAGCACATAATTCATGAAGAAGCAAGCAGCAAGGAAATTGGATCATCATCTTCAAAATGCAACAAAATAGCATCATTTGAGGCAGTAGTAGAGCACGAACATCCTAGGATTCCTCCCATTCGTCCTATAGAGAAAAGACATCGTGTTCCTTCTGCTTACAACCGGTTCATTAAGGAGGAAATTCAAAGGATTAAGGCCAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCGGCAAAAAATTGGGCACATTTCCCTCATATTCACTTTGGGAAGCAGCAAGCAAAGTTGGATCATGGTGAAGGGACTCGTGAAAAGACTAATGGATTCTACTGA

Protein sequence

>Msa0544780

MSMDMIATERVCYVHCNFCNTILAVNVPYSSLLTIVTVRCGHCANLLSVNMVAPLLQPFPPPQLPQKQHIIHEEASSKEIGSSSSKCNKIASFEAVVEHEHPRIPPIRPIEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGKQQAKLDHGEGTREKTNGFY*