Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256970 | XP_003596533.1 | 93.773 | 273 | 17 | 0 | 1 | 273 | 1 | 273 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256970 | sp|Q43675|USP_VICFA | 41.304 | 276 | 139 | 11 | 1 | 265 | 1 | 264 | 1.86e-64 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256970 | G7ITK8 | 93.773 | 273 | 17 | 0 | 1 | 273 | 1 | 273 | 0.0 | 541 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0256970 | Msa0296290 | 0.874405 | 6.931622e-68 | -8.615850e-47 |
| Msa0256970 | Msa0528570 | 0.805993 | 1.020657e-49 | -8.615850e-47 |
| Msa0256970 | Msa0611210 | 0.805384 | 1.370294e-49 | -8.615850e-47 |
| Msa0256970 | Msa0674560 | 0.802061 | 6.706409e-49 | -8.615850e-47 |
| Msa0256970 | Msa0729270 | 0.820281 | 7.452549e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256970 | MtrunA17_Chr2g0318871 | 93.773 | 273 | 17 | 0 | 1 | 273 | 1 | 273 | 0.0 | 541 |
| Msa0256970 | MtrunA17_Chr2g0318901 | 83.516 | 273 | 45 | 0 | 1 | 273 | 1 | 273 | 3.64e-178 | 491 |
| Msa0256970 | MtrunA17_Chr2g0318931 | 62.454 | 269 | 92 | 5 | 1 | 261 | 5 | 272 | 5.56e-121 | 347 |
| Msa0256970 | MtrunA17_Chr8g0355861 | 43.750 | 272 | 130 | 6 | 1 | 260 | 1 | 261 | 1.60e-73 | 226 |
| Msa0256970 | MtrunA17_Chr1g0168781 | 40.727 | 275 | 141 | 9 | 1 | 264 | 1 | 264 | 8.74e-69 | 214 |
| Msa0256970 | MtrunA17_Chr8g0355321 | 37.742 | 310 | 127 | 7 | 10 | 260 | 1 | 303 | 1.70e-68 | 214 |
| Msa0256970 | MtrunA17_Chr8g0355871 | 46.907 | 194 | 94 | 3 | 73 | 259 | 31 | 222 | 1.65e-59 | 189 |
| Msa0256970 | MtrunA17_Chr8g0355311 | 44.949 | 198 | 97 | 4 | 69 | 265 | 10 | 196 | 9.65e-55 | 175 |
| Msa0256970 | MtrunA17_Chr8g0355841 | 52.201 | 159 | 73 | 2 | 111 | 268 | 362 | 518 | 1.19e-54 | 184 |
| Msa0256970 | MtrunA17_Chr8g0355331 | 51.825 | 137 | 66 | 0 | 130 | 266 | 292 | 428 | 1.12e-50 | 172 |
| Msa0256970 | MtrunA17_Chr8g0355831 | 52.980 | 151 | 68 | 2 | 111 | 260 | 204 | 352 | 5.10e-48 | 163 |
| Msa0256970 | MtrunA17_Chr1g0147261 | 33.333 | 303 | 150 | 13 | 1 | 257 | 1 | 297 | 2.33e-41 | 144 |
| Msa0256970 | MtrunA17_Chr3g0139431 | 30.000 | 320 | 155 | 11 | 6 | 259 | 5 | 321 | 2.23e-39 | 139 |
| Msa0256970 | MtrunA17_Chr1g0147331 | 30.312 | 320 | 157 | 9 | 5 | 258 | 4 | 323 | 8.91e-38 | 135 |
| Msa0256970 | MtrunA17_Chr1g0146631 | 30.000 | 320 | 158 | 10 | 5 | 258 | 4 | 323 | 2.56e-37 | 134 |
| Msa0256970 | MtrunA17_Chr1g0147311 | 28.659 | 328 | 157 | 9 | 5 | 258 | 30 | 354 | 1.88e-36 | 132 |
| Msa0256970 | MtrunA17_Chr1g0147241 | 30.696 | 316 | 154 | 12 | 1 | 257 | 1 | 310 | 2.09e-36 | 131 |
| Msa0256970 | MtrunA17_Chr1g0147271 | 32.000 | 225 | 124 | 7 | 62 | 258 | 160 | 383 | 2.04e-29 | 114 |
| Msa0256970 | MtrunA17_Chr1g0147291 | 32.895 | 228 | 125 | 9 | 57 | 258 | 40 | 265 | 8.57e-29 | 110 |
| Msa0256970 | MtrunA17_Chr1g0147301 | 31.466 | 232 | 127 | 7 | 57 | 258 | 54 | 283 | 2.13e-28 | 109 |
| Msa0256970 | MtrunA17_Chr1g0147321 | 33.484 | 221 | 119 | 9 | 63 | 257 | 17 | 235 | 4.70e-28 | 108 |
| Msa0256970 | MtrunA17_Chr1g0147251 | 32.127 | 221 | 129 | 7 | 58 | 257 | 20 | 240 | 2.84e-27 | 105 |
| Msa0256970 | MtrunA17_Chr4g0034821 | 30.180 | 222 | 119 | 10 | 73 | 261 | 75 | 293 | 7.67e-18 | 81.6 |
| Msa0256970 | MtrunA17_Chr3g0144421 | 29.358 | 218 | 121 | 10 | 73 | 259 | 87 | 302 | 4.45e-17 | 79.3 |
| Msa0256970 | MtrunA17_Chr3g0138231 | 31.544 | 149 | 92 | 4 | 123 | 261 | 120 | 268 | 3.58e-16 | 76.6 |
| Msa0256970 | MtrunA17_Chr3g0144451 | 30.872 | 149 | 93 | 3 | 123 | 261 | 129 | 277 | 8.12e-15 | 72.8 |
| Msa0256970 | MtrunA17_Chr4g0034731 | 26.971 | 241 | 141 | 12 | 52 | 259 | 194 | 432 | 6.14e-13 | 68.2 |
| Msa0256970 | MtrunA17_Chr4g0034691 | 32.394 | 142 | 84 | 7 | 130 | 259 | 567 | 708 | 3.49e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256970 | AT5G25610.1 | 32.889 | 225 | 122 | 10 | 62 | 257 | 165 | 389 | 2.00e-28 | 112 |
| Msa0256970 | AT1G49320.1 | 34.028 | 144 | 80 | 6 | 130 | 258 | 135 | 278 | 1.64e-14 | 72.4 |
Find 66 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCAAGATTGTGCCTATTT+AGG | 0.096455 | 2_2:-52481440 | None:intergenic |
| AGCCTTATGGTGTTTATTAT+TGG | 0.188467 | 2_2:+52480757 | Msa0256970:CDS |
| TTGTCATTTCCTTGGAAATA+AGG | 0.195752 | 2_2:+52481208 | Msa0256970:CDS |
| AAATCCTTAGGAACATTAAT+TGG | 0.198984 | 2_2:+52480876 | Msa0256970:CDS |
| AGCAAGATTGTGCCTATTTA+GGG | 0.270331 | 2_2:-52481439 | None:intergenic |
| TGGTGCCAATGTTGCTGTTT+AGG | 0.294080 | 2_2:+52481271 | Msa0256970:CDS |
| CACTGCCTGAAGAAGAATAT+TGG | 0.300262 | 2_2:+52477317 | Msa0256970:CDS |
| GTTGTACTTGTACCCTAAAT+AGG | 0.325717 | 2_2:+52481427 | Msa0256970:three_prime_UTR |
| GCATTGTCCATACCTAAATT+AGG | 0.353560 | 2_2:-52481245 | None:intergenic |
| GCTTCCCAATATTCTTCTTC+AGG | 0.355894 | 2_2:-52477322 | None:intergenic |
| AAGAATATTGGGAAGCTGTT+TGG | 0.356329 | 2_2:+52477329 | Msa0256970:CDS |
| CATGTTATAATAAATGAAAA+TGG | 0.373971 | 2_2:+52481478 | Msa0256970:three_prime_UTR |
| GGATTTGCAATTTCAAAACT+TGG | 0.388201 | 2_2:+52480897 | Msa0256970:CDS |
| TTAGGTATGGACAATGCTTA+TGG | 0.390250 | 2_2:+52481251 | Msa0256970:CDS |
| CGTCCCTTAGCACAGCCTTA+TGG | 0.391614 | 2_2:+52480744 | Msa0256970:CDS |
| AACCCTGTTTGTCATTTCCT+TGG | 0.395882 | 2_2:+52481200 | Msa0256970:CDS |
| TATGAACATGAACTTTATCC+TGG | 0.401999 | 2_2:+52480693 | Msa0256970:CDS |
| GATGTGCAGCTTGCACTTGC+AGG | 0.411503 | 2_2:+52477280 | Msa0256970:intron |
| ACTGCCTGAAGAAGAATATT+GGG | 0.412787 | 2_2:+52477318 | Msa0256970:CDS |
| TTTCCAAGGAAATGACAAAC+AGG | 0.416413 | 2_2:-52481203 | None:intergenic |
| ATAGAGTCAGTGCAAAATCT+TGG | 0.422753 | 2_2:+52480975 | Msa0256970:CDS |
| TTGTTCATGTTTATATATGA+AGG | 0.423513 | 2_2:-52480946 | None:intergenic |
| ACTTGCCATGCTGATACTTC+AGG | 0.425351 | 2_2:+52481128 | Msa0256970:CDS |
| AGAAAGCAGTGATGTGTCAT+AGG | 0.434072 | 2_2:+52481000 | Msa0256970:CDS |
| TGTAGCCAAGGCTATAGAAC+TGG | 0.445536 | 2_2:+52481381 | Msa0256970:three_prime_UTR |
| AAATAACAACCTTGAGGTCC+AGG | 0.452077 | 2_2:-52477394 | None:intergenic |
| TAGAAGTTCTCGCAGAGAAG+TGG | 0.467184 | 2_2:-52477368 | None:intergenic |
| ATCCAATAATAAACACCATA+AGG | 0.472288 | 2_2:-52480759 | None:intergenic |
| CTTCTTCAGGCAGTGATGCA+TGG | 0.473820 | 2_2:-52477309 | None:intergenic |
| GAAGTGGGAATGGGAGTGTT+GGG | 0.474967 | 2_2:-52477352 | None:intergenic |
| GTTCCATCATTTGCCACCAA+TGG | 0.478916 | 2_2:-52481086 | None:intergenic |
| TCATAGGTTGAACTTTCAAA+AGG | 0.480588 | 2_2:+52481016 | Msa0256970:CDS |
| AAATCCAATTAATGTTCCTA+AGG | 0.483573 | 2_2:-52480880 | None:intergenic |
| CAAGTCCAGTTCTATAGCCT+TGG | 0.493597 | 2_2:-52481386 | None:intergenic |
| TCTATAGCCTTGGCTACAAA+AGG | 0.495723 | 2_2:-52481376 | None:intergenic |
| GGAGTACTCTCCATCATGGT+TGG | 0.497653 | 2_2:+52481292 | Msa0256970:exon |
| ATAAAATAGCCTTATTTCCA+AGG | 0.498608 | 2_2:-52481217 | None:intergenic |
| CAGATTATGAAAGGTGATCC+AGG | 0.503492 | 2_2:+52481173 | Msa0256970:CDS |
| AGAAGTGGGAATGGGAGTGT+TGG | 0.505103 | 2_2:-52477353 | None:intergenic |
| GTTCCATTGGTGGCAAATGA+TGG | 0.508291 | 2_2:+52481083 | Msa0256970:CDS |
| CTGCGAGAACTTCTAAAGCC+TGG | 0.511075 | 2_2:+52477376 | Msa0256970:CDS |
| ATGGGTACCTAATTTAGGTA+TGG | 0.514414 | 2_2:+52481238 | Msa0256970:CDS |
| TTCTCGCAGAGAAGTGGGAA+TGG | 0.526772 | 2_2:-52477362 | None:intergenic |
| GTGTGTCATCAATTTCCGTT+GGG | 0.528508 | 2_2:-52480650 | None:intergenic |
| TGTGTGTCATCAATTTCCGT+TGG | 0.538969 | 2_2:-52480651 | None:intergenic |
| AAATGAAAACGAGAAGGTGA+TGG | 0.546087 | 2_2:-52476879 | None:intergenic |
| TCTCGCAGAGAAGTGGGAAT+GGG | 0.548515 | 2_2:-52477361 | None:intergenic |
| TTTAGGAGTACTCTCCATCA+TGG | 0.550450 | 2_2:+52481288 | Msa0256970:exon |
| TGTAAAGAATAAACCCAAGA+AGG | 0.556296 | 2_2:+52480833 | Msa0256970:CDS |
| CTTCTAAAGCCTGGACCTCA+AGG | 0.560362 | 2_2:+52477385 | Msa0256970:CDS |
| ATTTATGTTACACAATCCCA+TGG | 0.564315 | 2_2:-52481320 | None:intergenic |
| AGAAGTTCTCGCAGAGAAGT+GGG | 0.568792 | 2_2:-52477367 | None:intergenic |
| TGACAAACAGGGTTACTACC+TGG | 0.570390 | 2_2:-52481191 | None:intergenic |
| ACACCATAAGGCTGTGCTAA+GGG | 0.576123 | 2_2:-52480747 | None:intergenic |
| AACACCATAAGGCTGTGCTA+AGG | 0.579380 | 2_2:-52480748 | None:intergenic |
| GTACTCCTAAACAGCAACAT+TGG | 0.581094 | 2_2:-52481276 | None:intergenic |
| ATGCTTCATCAGATTATGAA+AGG | 0.582000 | 2_2:+52481164 | Msa0256970:CDS |
| ATCATGGTTGGACACACCAT+GGG | 0.582351 | 2_2:+52481304 | Msa0256970:three_prime_UTR |
| CATGGTGTGTCCAACCATGA+TGG | 0.584358 | 2_2:-52481302 | None:intergenic |
| TGTCATCAATTTCCGTTGGG+AGG | 0.591747 | 2_2:-52480647 | None:intergenic |
| CATCATGGTTGGACACACCA+TGG | 0.594647 | 2_2:+52481303 | Msa0256970:three_prime_UTR |
| GAACTGAAATGAAAACGAGA+AGG | 0.613747 | 2_2:-52476885 | None:intergenic |
| AAATGGACTGTGTCTCATTG+TGG | 0.626185 | 2_2:+52481495 | Msa0256970:three_prime_UTR |
| TTCCAAGGAAATGACAAACA+GGG | 0.636533 | 2_2:-52481202 | None:intergenic |
| TCATGCCTGAAGTATCAGCA+TGG | 0.692679 | 2_2:-52481133 | None:intergenic |
| TGAAATTGATGACCTCCCAA+CGG | 0.698701 | 2_2:+52480635 | Msa0256970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATTA+TGG | + | chr2_2:52477208-52477227 | Msa0256970:intron | 0.0% |
| !!! | TTGGTTTTTTTTTTTTTTTA+GGG | + | chr2_2:52477087-52477106 | Msa0256970:intron | 10.0% |
| !!! | ATCTAAAATAGTAAATTTTA+TGG | + | chr2_2:52477593-52477612 | Msa0256970:intron | 10.0% |
| !!! | TCTAAAATAGTAAATTTTAT+GGG | + | chr2_2:52477594-52477613 | Msa0256970:intron | 10.0% |
| !!! | AGATTTTTTTTTTTTTTTTG+TGG | - | chr2_2:52478372-52478391 | None:intergenic | 10.0% |
| !! | TAAAAAAAAAAAAAACATGT+GGG | - | chr2_2:52478423-52478442 | None:intergenic | 10.0% |
| !! | TTCTTATTAATTAAAAATAG+TGG | + | chr2_2:52479782-52479801 | Msa0256970:intron | 10.0% |
| !! | CTAAATAAATAACTAAATAA+AGG | - | chr2_2:52480235-52480254 | None:intergenic | 10.0% |
| !!! | TTTGATAAAAGTATATATTA+AGG | - | chr2_2:52480295-52480314 | None:intergenic | 10.0% |
| !!! | GTTGGTTTTTTTTTTTTTTT+AGG | + | chr2_2:52477086-52477105 | Msa0256970:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTAGGGA+AGG | + | chr2_2:52477091-52477110 | Msa0256970:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTAGGGAA+GGG | + | chr2_2:52477092-52477111 | Msa0256970:intron | 15.0% |
| !!! | CTAAAATAGTAAATTTTATG+GGG | + | chr2_2:52477595-52477614 | Msa0256970:intron | 15.0% |
| !!! | AATTATACCACTAAATTTTT+TGG | - | chr2_2:52477719-52477738 | None:intergenic | 15.0% |
| !! | AAAAAATTTAGTGGTATAAT+TGG | + | chr2_2:52477718-52477737 | Msa0256970:intron | 15.0% |
| !! | AAAAATTTAGTGGTATAATT+GGG | + | chr2_2:52477719-52477738 | Msa0256970:intron | 15.0% |
| !!! | TTTAGATGTTTTTTTTTTTG+TGG | - | chr2_2:52478266-52478285 | None:intergenic | 15.0% |
| !! | GTAAAAAAAAAAAAAACATG+TGG | - | chr2_2:52478424-52478443 | None:intergenic | 15.0% |
| !! | ATTAATTGTTTAACATATTC+CGG | + | chr2_2:52478597-52478616 | Msa0256970:intron | 15.0% |
| !!! | TTTTTTTTTGGTGAATAAAT+TGG | - | chr2_2:52478703-52478722 | None:intergenic | 15.0% |
| !! | ATTAGAAAGAAAAAAGAAAT+GGG | - | chr2_2:52478732-52478751 | None:intergenic | 15.0% |
| !! | TATTAGAAAGAAAAAAGAAA+TGG | - | chr2_2:52478733-52478752 | None:intergenic | 15.0% |
| !!! | ATGTTTTTTTAGTAGAATTT+AGG | + | chr2_2:52479118-52479137 | Msa0256970:intron | 15.0% |
| !! | TTACACAATTATTCAAATAT+TGG | + | chr2_2:52479712-52479731 | Msa0256970:intron | 15.0% |
| !! | TTAACATTTCCTTAAATTAT+TGG | - | chr2_2:52480436-52480455 | None:intergenic | 15.0% |
| !!! | AGATTTTTTTTTTCACTTTT+AGG | + | chr2_2:52480566-52480585 | Msa0256970:intron | 15.0% |
| !! | CATGTTATAATAAATGAAAA+TGG | + | chr2_2:52481478-52481497 | Msa0256970:three_prime_UTR | 15.0% |
| !!! | TACTTTAATTGCCAAATTTT+AGG | - | chr2_2:52477021-52477040 | None:intergenic | 20.0% |
| !! | AATATTAAATAACAACCTTG+AGG | - | chr2_2:52477403-52477422 | None:intergenic | 20.0% |
| !! | AATATTAAATAACAACCTTG+AGG | - | chr2_2:52477403-52477422 | None:intergenic | 20.0% |
| !! | GGAGATGAAAAAATTAATAA+AGG | - | chr2_2:52477686-52477705 | None:intergenic | 20.0% |
| !!! | AAATTTTTTGGTTTCAACTT+TGG | - | chr2_2:52477707-52477726 | None:intergenic | 20.0% |
| !!! | TAATTCACAAAGACATTTTT+AGG | - | chr2_2:52478051-52478070 | None:intergenic | 20.0% |
| !! | GGTAAAAAAAAAAAACATGT+GGG | - | chr2_2:52478314-52478333 | None:intergenic | 20.0% |
| !! | TGGTAAAAAAAAAAAACATG+TGG | - | chr2_2:52478315-52478334 | None:intergenic | 20.0% |
| !! | GGTAAAAAAAAAAAACATGT+GGG | - | chr2_2:52478314-52478333 | None:intergenic | 20.0% |
| !! | TGGTAAAAAAAAAAAACATG+TGG | - | chr2_2:52478315-52478334 | None:intergenic | 20.0% |
| !!! | TCTTTAAGATGGATTAAATT+GGG | - | chr2_2:52478542-52478561 | None:intergenic | 20.0% |
| !!! | TTCTTTAAGATGGATTAAAT+TGG | - | chr2_2:52478543-52478562 | None:intergenic | 20.0% |
| !! | TTAATCCATCTTAAAGAAAA+TGG | + | chr2_2:52478545-52478564 | Msa0256970:intron | 20.0% |
| !! | TGAATAAATTGGAAAAACTT+TGG | - | chr2_2:52478692-52478711 | None:intergenic | 20.0% |
| !!! | AATGGGAAAAACTTTTTTTT+TGG | - | chr2_2:52478715-52478734 | None:intergenic | 20.0% |
| !!! | AGTATAAAACATGTTTGTTA+AGG | + | chr2_2:52478884-52478903 | Msa0256970:intron | 20.0% |
| !! | GTGTAATTAAAAAACTTCAT+TGG | - | chr2_2:52478938-52478957 | None:intergenic | 20.0% |
| !! | TTGTAAAAAAGAATAGATGT+TGG | + | chr2_2:52479026-52479045 | Msa0256970:intron | 20.0% |
| !! | TTAAATTGGGAACAATATTA+AGG | + | chr2_2:52479064-52479083 | Msa0256970:intron | 20.0% |
| !!! | AGAATTTAGGATATACTTTA+AGG | + | chr2_2:52479131-52479150 | Msa0256970:intron | 20.0% |
| !! | TGAAGAAACTTTACTTATTA+AGG | + | chr2_2:52479844-52479863 | Msa0256970:intron | 20.0% |
| !!! | TTTTTTTCTATTTTAACCGT+GGG | - | chr2_2:52479971-52479990 | None:intergenic | 20.0% |
| !!! | ATTTTTTTCTATTTTAACCG+TGG | - | chr2_2:52479972-52479991 | None:intergenic | 20.0% |
| !! | AAAATAGATAAAAGTTAGTC+TGG | + | chr2_2:52479987-52480006 | Msa0256970:intron | 20.0% |
| !!! | CTCTTGTCAATTTTATTTAT+GGG | + | chr2_2:52480035-52480054 | Msa0256970:intron | 20.0% |
| !!! | CTAATATAGAAATTTTGCAT+TGG | + | chr2_2:52480096-52480115 | Msa0256970:intron | 20.0% |
| !! | TAAGGAATTAATAACTTCAA+TGG | - | chr2_2:52480277-52480296 | None:intergenic | 20.0% |
| !! | TTCATTGTATAAAAGTAAGA+AGG | + | chr2_2:52480403-52480422 | Msa0256970:intron | 20.0% |
| !! | GTCATAATTAGGTTTAAATT+AGG | - | chr2_2:52480607-52480626 | None:intergenic | 20.0% |
| !! | TTGTTCATGTTTATATATGA+AGG | - | chr2_2:52480949-52480968 | None:intergenic | 20.0% |
| !!! | AAGAATTATTAAGTGTTGAG+AGG | - | chr2_2:52476955-52476974 | None:intergenic | 25.0% |
| ! | TCTCAACACTTAATAATTCT+TGG | + | chr2_2:52476954-52476973 | Msa0256970:intron | 25.0% |
| ! | TAAGTTTATAGTACATCAGT+TGG | - | chr2_2:52476990-52477009 | None:intergenic | 25.0% |
| !! | TTTAATTGCCAAATTTTAGG+AGG | - | chr2_2:52477018-52477037 | None:intergenic | 25.0% |
| ! | GTTGAAACCAAAAAATTTAG+TGG | + | chr2_2:52477709-52477728 | Msa0256970:intron | 25.0% |
| ! | AAACCATTGAATTTAGTAAG+AGG | - | chr2_2:52477886-52477905 | None:intergenic | 25.0% |
| !! | AAGTTCACAAAGACATTTTT+AGG | - | chr2_2:52478180-52478199 | None:intergenic | 25.0% |
| !!! | AATTGGGTTTTTGGTAAATT+TGG | - | chr2_2:52478335-52478354 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTTTGTGGTGAC+CGG | - | chr2_2:52478365-52478384 | None:intergenic | 25.0% |
| !!! | AATTGGGTTTTTGGTAAATT+TGG | - | chr2_2:52478335-52478354 | None:intergenic | 25.0% |
| !!! | GTGTTAAGATGGATTAAATT+GGG | - | chr2_2:52478462-52478481 | None:intergenic | 25.0% |
| !!! | AGTGTTAAGATGGATTAAAT+TGG | - | chr2_2:52478463-52478482 | None:intergenic | 25.0% |
| ! | TTTACACTTTAGTGTTAAGA+TGG | - | chr2_2:52478473-52478492 | None:intergenic | 25.0% |
| !!! | AATTGGGTTTTTGGTAAATT+TGG | - | chr2_2:52478335-52478354 | None:intergenic | 25.0% |
| !!! | AACTACCATTTTCTTTAAGA+TGG | - | chr2_2:52478553-52478572 | None:intergenic | 25.0% |
| ! | TAACCATAATTTACGATAAC+AGG | - | chr2_2:52478669-52478688 | None:intergenic | 25.0% |
| ! | GGAAAAAAAAACAAGAAAAG+AGG | - | chr2_2:52478759-52478778 | None:intergenic | 25.0% |
| ! | CAATTAAAAAACTCTTCAAG+TGG | - | chr2_2:52478977-52478996 | None:intergenic | 25.0% |
| ! | TGCACTAAACTAAAAAAAAC+TGG | + | chr2_2:52478995-52479014 | Msa0256970:intron | 25.0% |
| !! | ACTTACTTCTTAACGATTTT+AGG | + | chr2_2:52479271-52479290 | Msa0256970:intron | 25.0% |
| !! | ATTTACACCTTAGTGTTTTT+AGG | + | chr2_2:52479310-52479329 | Msa0256970:intron | 25.0% |
| ! | GTGTTGCAAATATATATTTG+AGG | - | chr2_2:52479352-52479371 | None:intergenic | 25.0% |
| !!! | CAACTTTTTTCTTTGATTCA+TGG | - | chr2_2:52479466-52479485 | None:intergenic | 25.0% |
| ! | TTAAGGATTTCAACCTATTA+AGG | + | chr2_2:52479861-52479880 | Msa0256970:intron | 25.0% |
| ! | CTATTATCTTCTTCTTTCAA+TGG | - | chr2_2:52479891-52479910 | None:intergenic | 25.0% |
| ! | CATTGAAAGAAGAAGATAAT+AGG | + | chr2_2:52479889-52479908 | Msa0256970:intron | 25.0% |
| ! | TAATTACTAACGCTTATACA+AGG | + | chr2_2:52479919-52479938 | Msa0256970:intron | 25.0% |
| !!! | TTTTTTCTATTTTAACCGTG+GGG | - | chr2_2:52479970-52479989 | None:intergenic | 25.0% |
| !!! | GCTCTTGTCAATTTTATTTA+TGG | + | chr2_2:52480034-52480053 | Msa0256970:intron | 25.0% |
| !! | TATAGAAATTTTGCATTGGA+AGG | + | chr2_2:52480100-52480119 | Msa0256970:intron | 25.0% |
| ! | GAATTAATAACTTCAATGGT+AGG | - | chr2_2:52480273-52480292 | None:intergenic | 25.0% |
| ! | GGAATTATGCCAATAATTTA+AGG | + | chr2_2:52480424-52480443 | Msa0256970:intron | 25.0% |
| ! | TTTAAACCTAATTATGACAC+AGG | + | chr2_2:52480609-52480628 | Msa0256970:intron | 25.0% |
| !! | GTTCATAGAAAAAGTTTGTT+GGG | - | chr2_2:52480680-52480699 | None:intergenic | 25.0% |
| ! | TGTTCATAGAAAAAGTTTGT+TGG | - | chr2_2:52480681-52480700 | None:intergenic | 25.0% |
| ! | ATCCAATAATAAACACCATA+AGG | - | chr2_2:52480762-52480781 | None:intergenic | 25.0% |
| ! | ATTAAAGACCTTGAAAAAGA+GGG | + | chr2_2:52480789-52480808 | Msa0256970:CDS | 25.0% |
| !! | AATTTTTGTTCAACCTTCTT+GGG | - | chr2_2:52480849-52480868 | None:intergenic | 25.0% |
| !! | AAATTTTTGTTCAACCTTCT+TGG | - | chr2_2:52480850-52480869 | None:intergenic | 25.0% |
| !! | AAATTTTGTGCAAAATCCTT+AGG | + | chr2_2:52480864-52480883 | Msa0256970:CDS | 25.0% |
| ! | AAATCCTTAGGAACATTAAT+TGG | + | chr2_2:52480876-52480895 | Msa0256970:CDS | 25.0% |
| ! | AAATCCAATTAATGTTCCTA+AGG | - | chr2_2:52480883-52480902 | None:intergenic | 25.0% |
| !! | TTTTATTGTCATGAAGTTCA+TGG | + | chr2_2:52481044-52481063 | Msa0256970:CDS | 25.0% |
| !!! | ATAAAATAGCCTTATTTCCA+AGG | - | chr2_2:52481220-52481239 | None:intergenic | 25.0% |
| !!! | TTGGAAATAAGGCTATTTTA+TGG | + | chr2_2:52481219-52481238 | Msa0256970:CDS | 25.0% |
| !!! | TGGAAATAAGGCTATTTTAT+GGG | + | chr2_2:52481220-52481239 | Msa0256970:CDS | 25.0% |
| !! | ATTTTATGGGTACCTAATTT+AGG | + | chr2_2:52481233-52481252 | Msa0256970:CDS | 25.0% |
| TTAAACGACCTCCTAAAATT+TGG | + | chr2_2:52477007-52477026 | Msa0256970:intron | 30.0% | |
| !!! | TTTTTTTTTTAGGGAAGGGT+TGG | + | chr2_2:52477096-52477115 | Msa0256970:intron | 30.0% |
| !!! | CTATTTTAACTTCTAAAGCC+TGG | + | chr2_2:52477432-52477451 | Msa0256970:intron | 30.0% |
| AATTTAGTGGTATAATTGGG+AGG | + | chr2_2:52477722-52477741 | Msa0256970:intron | 30.0% | |
| GTCATAGTGTTATACTACAA+CGG | - | chr2_2:52477821-52477840 | None:intergenic | 30.0% | |
| GTTGTAGTATAACACTATGA+CGG | + | chr2_2:52477820-52477839 | Msa0256970:intron | 30.0% | |
| TCTTCAACTGTATCATAGTA+TGG | - | chr2_2:52477926-52477945 | None:intergenic | 30.0% | |
| !! | TTCACAAAGACATTTTTAGG+TGG | - | chr2_2:52478048-52478067 | None:intergenic | 30.0% |
| !! | TTCACAAAGACATTTTTAGG+TGG | - | chr2_2:52478048-52478067 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTTGTGGTGACC+GGG | - | chr2_2:52478258-52478277 | None:intergenic | 30.0% |
| !!! | GTTTTTTTTTTTGTGGTGAC+CGG | - | chr2_2:52478259-52478278 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTTGTGGTGACC+GGG | - | chr2_2:52478258-52478277 | None:intergenic | 30.0% |
| !!! | GATGGATTAAATTGGGTTTT+TGG | - | chr2_2:52478455-52478474 | None:intergenic | 30.0% |
| !!! | GATGGATTAAATTGGGTTTT+TGG | - | chr2_2:52478455-52478474 | None:intergenic | 30.0% |
| TTGTTTAACATATTCCGGAA+CGG | + | chr2_2:52478602-52478621 | Msa0256970:intron | 30.0% | |
| TGACCTGTTATCGTAAATTA+TGG | + | chr2_2:52478663-52478682 | Msa0256970:intron | 30.0% | |
| !!! | CCACTATTTTTTACACAATC+TGG | - | chr2_2:52478805-52478824 | None:intergenic | 30.0% |
| CCAGATTGTGTAAAAAATAG+TGG | + | chr2_2:52478802-52478821 | Msa0256970:intron | 30.0% | |
| TTAACAAAAAAAGACAGACG+TGG | + | chr2_2:52478840-52478859 | Msa0256970:intron | 30.0% | |
| TCTACAATTTATCGTCACAA+TGG | + | chr2_2:52479426-52479445 | Msa0256970:intron | 30.0% | |
| !!! | AAGTTTTGTTTTGCTCACTA+AGG | + | chr2_2:52479520-52479539 | Msa0256970:intron | 30.0% |
| TTATCTTCTTCTTTCAATGG+AGG | - | chr2_2:52479888-52479907 | None:intergenic | 30.0% | |
| AATGTTAAATTGTGCCCTTA+AGG | + | chr2_2:52480448-52480467 | Msa0256970:intron | 30.0% | |
| TATGAACATGAACTTTATCC+TGG | + | chr2_2:52480693-52480712 | Msa0256970:CDS | 30.0% | |
| ! | AGCCTTATGGTGTTTATTAT+TGG | + | chr2_2:52480757-52480776 | Msa0256970:CDS | 30.0% |
| CATTAAAGACCTTGAAAAAG+AGG | + | chr2_2:52480788-52480807 | Msa0256970:CDS | 30.0% | |
| !! | TAGTATATCCCTCTTTTTCA+AGG | - | chr2_2:52480800-52480819 | None:intergenic | 30.0% |
| TGTAAAGAATAAACCCAAGA+AGG | + | chr2_2:52480833-52480852 | Msa0256970:CDS | 30.0% | |
| GGATTTGCAATTTCAAAACT+TGG | + | chr2_2:52480897-52480916 | Msa0256970:CDS | 30.0% | |
| ! | TCATAGGTTGAACTTTCAAA+AGG | + | chr2_2:52481016-52481035 | Msa0256970:CDS | 30.0% |
| ATGCTTCATCAGATTATGAA+AGG | + | chr2_2:52481164-52481183 | Msa0256970:CDS | 30.0% | |
| ! | TTGTCATTTCCTTGGAAATA+AGG | + | chr2_2:52481208-52481227 | Msa0256970:CDS | 30.0% |
| ATTTATGTTACACAATCCCA+TGG | - | chr2_2:52481323-52481342 | None:intergenic | 30.0% | |
| AAATGAAAACGAGAAGGTGA+TGG | - | chr2_2:52476882-52476901 | None:intergenic | 35.0% | |
| GAACTGAAATGAAAACGAGA+AGG | - | chr2_2:52476888-52476907 | None:intergenic | 35.0% | |
| !! | ATTAAGTGTTGAGAGGATCA+TGG | - | chr2_2:52476948-52476967 | None:intergenic | 35.0% |
| TTACTTACACATGTAGAGTG+TGG | + | chr2_2:52477061-52477080 | Msa0256970:intron | 35.0% | |
| TACTTACACATGTAGAGTGT+GGG | + | chr2_2:52477062-52477081 | Msa0256970:intron | 35.0% | |
| ACTGCCTGAAGAAGAATATT+GGG | + | chr2_2:52477318-52477337 | Msa0256970:CDS | 35.0% | |
| AAGAATATTGGGAAGCTGTT+TGG | + | chr2_2:52477329-52477348 | Msa0256970:CDS | 35.0% | |
| GCTAACAAGAGATTGAATGT+TGG | - | chr2_2:52477772-52477791 | None:intergenic | 35.0% | |
| GTGTTATACTACAACGGTAA+AGG | - | chr2_2:52477815-52477834 | None:intergenic | 35.0% | |
| GAGCCTCTTACTAAATTCAA+TGG | + | chr2_2:52477880-52477899 | Msa0256970:intron | 35.0% | |
| TCAACTGTATCATAGTATGG+TGG | - | chr2_2:52477923-52477942 | None:intergenic | 35.0% | |
| GGCAATGCATAAAATACGTA+AGG | + | chr2_2:52478218-52478237 | Msa0256970:intron | 35.0% | |
| !!! | TTTTTTTTTTGTGGTGACCG+GGG | - | chr2_2:52478257-52478276 | None:intergenic | 35.0% |
| AAAAACCCAATTTAATCCCC+CGG | + | chr2_2:52478343-52478362 | Msa0256970:intron | 35.0% | |
| !!! | TTTTTTTTTTGTGGTGACCG+GGG | - | chr2_2:52478257-52478276 | None:intergenic | 35.0% |
| GTTAGAAGTAAAAACCGTTC+CGG | - | chr2_2:52478619-52478638 | None:intergenic | 35.0% | |
| ACGATAACAGGTCAATGATA+AGG | - | chr2_2:52478657-52478676 | None:intergenic | 35.0% | |
| GTAATGTGTTTAGTTGTCAG+AGG | - | chr2_2:52478780-52478799 | None:intergenic | 35.0% | |
| AGAGTGAATGTCAATTAGTG+AGG | + | chr2_2:52479181-52479200 | Msa0256970:intron | 35.0% | |
| !!! | TACACCTTAGTGTTTTTAGG+TGG | + | chr2_2:52479313-52479332 | Msa0256970:intron | 35.0% |
| TACACCACCTAAAAACACTA+AGG | - | chr2_2:52479320-52479339 | None:intergenic | 35.0% | |
| !!! | TGGTTTTGTTATAGTGAGTG+TGG | + | chr2_2:52479631-52479650 | Msa0256970:intron | 35.0% |
| !!! | GGTTTTGTTATAGTGAGTGT+GGG | + | chr2_2:52479632-52479651 | Msa0256970:intron | 35.0% |
| !! | GTTTTGTTATAGTGAGTGTG+GGG | + | chr2_2:52479633-52479652 | Msa0256970:intron | 35.0% |
| !! | TTTTGTTATAGTGAGTGTGG+GGG | + | chr2_2:52479634-52479653 | Msa0256970:intron | 35.0% |
| TTTCAATGGAGGTCCTTAAT+AGG | - | chr2_2:52479877-52479896 | None:intergenic | 35.0% | |
| GAAATATTAACTAGTGCTCC+AGG | + | chr2_2:52480057-52480076 | Msa0256970:intron | 35.0% | |
| CATTGGAAGGTGATTAAAAG+TGG | + | chr2_2:52480113-52480132 | Msa0256970:intron | 35.0% | |
| TCTTCTTAACTAGTGTCTTC+GGG | - | chr2_2:52480211-52480230 | None:intergenic | 35.0% | |
| GTCTTCTTAACTAGTGTCTT+CGG | - | chr2_2:52480212-52480231 | None:intergenic | 35.0% | |
| TCAACACCTGTGTCATAATT+AGG | - | chr2_2:52480618-52480637 | None:intergenic | 35.0% | |
| ATAGAGTCAGTGCAAAATCT+TGG | + | chr2_2:52480975-52480994 | Msa0256970:CDS | 35.0% | |
| ! | TCATGGAACAACAGCTTTTA+TGG | + | chr2_2:52481061-52481080 | Msa0256970:CDS | 35.0% |
| ! | AACAGCTTTTATGGTTCCAT+TGG | + | chr2_2:52481070-52481089 | Msa0256970:CDS | 35.0% |
| TTCCAAGGAAATGACAAACA+GGG | - | chr2_2:52481205-52481224 | None:intergenic | 35.0% | |
| TTTCCAAGGAAATGACAAAC+AGG | - | chr2_2:52481206-52481225 | None:intergenic | 35.0% | |
| ATGGGTACCTAATTTAGGTA+TGG | + | chr2_2:52481238-52481257 | Msa0256970:CDS | 35.0% | |
| GCATTGTCCATACCTAAATT+AGG | - | chr2_2:52481248-52481267 | None:intergenic | 35.0% | |
| TTAGGTATGGACAATGCTTA+TGG | + | chr2_2:52481251-52481270 | Msa0256970:CDS | 35.0% | |
| GTTGTACTTGTACCCTAAAT+AGG | + | chr2_2:52481427-52481446 | Msa0256970:three_prime_UTR | 35.0% | |
| AGCAAGATTGTGCCTATTTA+GGG | - | chr2_2:52481442-52481461 | None:intergenic | 35.0% | |
| GAGAGGATCATGGAAATGAA+AGG | - | chr2_2:52476938-52476957 | None:intergenic | 40.0% | |
| ACTTACACATGTAGAGTGTG+GGG | + | chr2_2:52477063-52477082 | Msa0256970:intron | 40.0% | |
| CACTGCCTGAAGAAGAATAT+TGG | + | chr2_2:52477317-52477336 | Msa0256970:CDS | 40.0% | |
| GCTTCCCAATATTCTTCTTC+AGG | - | chr2_2:52477325-52477344 | None:intergenic | 40.0% | |
| AAATAACAACCTTGAGGTCC+AGG | - | chr2_2:52477397-52477416 | None:intergenic | 40.0% | |
| AAATAACAACCTTGAGGTCC+AGG | - | chr2_2:52477397-52477416 | None:intergenic | 40.0% | |
| TGTGAACTTAGCTGATCAGT+TGG | + | chr2_2:52478191-52478210 | Msa0256970:intron | 40.0% | |
| !! | CTTAGCTGATCAGTTGGTAA+AGG | + | chr2_2:52478197-52478216 | Msa0256970:intron | 40.0% |
| ! | GGGGGATTAAATTGGGTTTT+TGG | - | chr2_2:52478344-52478363 | None:intergenic | 40.0% |
| !!! | TTTTTTTTTGTGGTGACCGG+GGG | - | chr2_2:52478256-52478275 | None:intergenic | 40.0% |
| TTCAACAATAACAAGCCCCA+CGG | + | chr2_2:52479952-52479971 | Msa0256970:intron | 40.0% | |
| CTTCTTAACTAGTGTCTTCG+GGG | - | chr2_2:52480210-52480229 | None:intergenic | 40.0% | |
| ! | CTCACTAACTTGTGCCTTAA+GGG | - | chr2_2:52480465-52480484 | None:intergenic | 40.0% |
| ! | ACTCACTAACTTGTGCCTTA+AGG | - | chr2_2:52480466-52480485 | None:intergenic | 40.0% |
| GCACAAGTTAGTGAGTCAAA+AGG | + | chr2_2:52480470-52480489 | Msa0256970:intron | 40.0% | |
| ! | TGAAATTGATGACCTCCCAA+CGG | + | chr2_2:52480635-52480654 | Msa0256970:CDS | 40.0% |
| GTGTGTCATCAATTTCCGTT+GGG | - | chr2_2:52480653-52480672 | None:intergenic | 40.0% | |
| TGTGTGTCATCAATTTCCGT+TGG | - | chr2_2:52480654-52480673 | None:intergenic | 40.0% | |
| !! | TGCATGTTCATTGTTTTGCC+AGG | - | chr2_2:52480714-52480733 | None:intergenic | 40.0% |
| AGAAAGCAGTGATGTGTCAT+AGG | + | chr2_2:52481000-52481019 | Msa0256970:CDS | 40.0% | |
| ! | AGCTTTTATGGTTCCATTGG+TGG | + | chr2_2:52481073-52481092 | Msa0256970:CDS | 40.0% |
| CAGATTATGAAAGGTGATCC+AGG | + | chr2_2:52481173-52481192 | Msa0256970:CDS | 40.0% | |
| ! | AACCCTGTTTGTCATTTCCT+TGG | + | chr2_2:52481200-52481219 | Msa0256970:CDS | 40.0% |
| GTACTCCTAAACAGCAACAT+TGG | - | chr2_2:52481279-52481298 | None:intergenic | 40.0% | |
| !! | TTTAGGAGTACTCTCCATCA+TGG | + | chr2_2:52481288-52481307 | Msa0256970:exon | 40.0% |
| ! | TCTATAGCCTTGGCTACAAA+AGG | - | chr2_2:52481379-52481398 | None:intergenic | 40.0% |
| CAGCAAGATTGTGCCTATTT+AGG | - | chr2_2:52481443-52481462 | None:intergenic | 40.0% | |
| !! | AAATGGACTGTGTCTCATTG+TGG | + | chr2_2:52481495-52481514 | Msa0256970:three_prime_UTR | 40.0% |
| CTTACACATGTAGAGTGTGG+GGG | + | chr2_2:52477064-52477083 | Msa0256970:intron | 45.0% | |
| AGAAGTTCTCGCAGAGAAGT+GGG | - | chr2_2:52477370-52477389 | None:intergenic | 45.0% | |
| TAGAAGTTCTCGCAGAGAAG+TGG | - | chr2_2:52477371-52477390 | None:intergenic | 45.0% | |
| CACGCGATGTAATACTCTGT+CGG | - | chr2_2:52477748-52477767 | None:intergenic | 45.0% | |
| !!! | GAAAGAGAGAGCGTTTTCGT+GGG | + | chr2_2:52479542-52479561 | Msa0256970:intron | 45.0% |
| !! | AGTCTCCTTAACTTGTGTCC+TGG | - | chr2_2:52480078-52480097 | None:intergenic | 45.0% |
| TGTCATCAATTTCCGTTGGG+AGG | - | chr2_2:52480650-52480669 | None:intergenic | 45.0% | |
| ACACCATAAGGCTGTGCTAA+GGG | - | chr2_2:52480750-52480769 | None:intergenic | 45.0% | |
| AACACCATAAGGCTGTGCTA+AGG | - | chr2_2:52480751-52480770 | None:intergenic | 45.0% | |
| ! | GTTCCATTGGTGGCAAATGA+TGG | + | chr2_2:52481083-52481102 | Msa0256970:CDS | 45.0% |
| GTTCCATCATTTGCCACCAA+TGG | - | chr2_2:52481089-52481108 | None:intergenic | 45.0% | |
| ACTTGCCATGCTGATACTTC+AGG | + | chr2_2:52481128-52481147 | Msa0256970:CDS | 45.0% | |
| ! | TCATGCCTGAAGTATCAGCA+TGG | - | chr2_2:52481136-52481155 | None:intergenic | 45.0% |
| TGACAAACAGGGTTACTACC+TGG | - | chr2_2:52481194-52481213 | None:intergenic | 45.0% | |
| !! | TGGTGCCAATGTTGCTGTTT+AGG | + | chr2_2:52481271-52481290 | Msa0256970:CDS | 45.0% |
| ATCATGGTTGGACACACCAT+GGG | + | chr2_2:52481304-52481323 | Msa0256970:three_prime_UTR | 45.0% | |
| ! | TCTCGTACCTTTTGTAGCCA+AGG | + | chr2_2:52481369-52481388 | Msa0256970:three_prime_UTR | 45.0% |
| TGTAGCCAAGGCTATAGAAC+TGG | + | chr2_2:52481381-52481400 | Msa0256970:three_prime_UTR | 45.0% | |
| CAAGTCCAGTTCTATAGCCT+TGG | - | chr2_2:52481389-52481408 | None:intergenic | 45.0% | |
| !! | TTATTTAAAAATGATTAAAT+TGG | + | chr2_2:52479050-52479069 | Msa0256970:intron | 5.0% |
| !! | TATTTAAAAATGATTAAATT+GGG | + | chr2_2:52479051-52479070 | Msa0256970:intron | 5.0% |
| !! | TAAATAAATAACTAAATAAA+GGG | - | chr2_2:52480234-52480253 | None:intergenic | 5.0% |
| CTTCTTCAGGCAGTGATGCA+TGG | - | chr2_2:52477312-52477331 | None:intergenic | 50.0% | |
| !! | GAAGTGGGAATGGGAGTGTT+GGG | - | chr2_2:52477355-52477374 | None:intergenic | 50.0% |
| ! | AGAAGTGGGAATGGGAGTGT+TGG | - | chr2_2:52477356-52477375 | None:intergenic | 50.0% |
| TCTCGCAGAGAAGTGGGAAT+GGG | - | chr2_2:52477364-52477383 | None:intergenic | 50.0% | |
| TTCTCGCAGAGAAGTGGGAA+TGG | - | chr2_2:52477365-52477384 | None:intergenic | 50.0% | |
| !! | CTGCGAGAACTTCTAAAGCC+TGG | + | chr2_2:52477376-52477395 | Msa0256970:CDS | 50.0% |
| !! | CTTCTAAAGCCTGGACCTCA+AGG | + | chr2_2:52477385-52477404 | Msa0256970:CDS | 50.0% |
| !! | CTTCTAAAGCCTGGACCTCA+AGG | + | chr2_2:52477385-52477404 | Msa0256970:CDS | 50.0% |
| AAGGTCCAGAGTTCAAACCC+CGG | + | chr2_2:52478237-52478256 | Msa0256970:intron | 50.0% | |
| GGTGACCGGGGGATTAAATT+GGG | - | chr2_2:52478351-52478370 | None:intergenic | 50.0% | |
| TGGTGACCGGGGGATTAAAT+TGG | - | chr2_2:52478352-52478371 | None:intergenic | 50.0% | |
| !!! | GGAAAGAGAGAGCGTTTTCG+TGG | + | chr2_2:52479541-52479560 | Msa0256970:intron | 50.0% |
| ! | CGTGTGTCTGCGATGTGTTT+TGG | + | chr2_2:52479611-52479630 | Msa0256970:intron | 50.0% |
| TGTTATAGTGAGTGTGGGGG+TGG | + | chr2_2:52479637-52479656 | Msa0256970:intron | 50.0% | |
| GTTATAGTGAGTGTGGGGGT+GGG | + | chr2_2:52479638-52479657 | Msa0256970:intron | 50.0% | |
| TTATAGTGAGTGTGGGGGTG+GGG | + | chr2_2:52479639-52479658 | Msa0256970:intron | 50.0% | |
| GTGCTCCAGGACACAAGTTA+AGG | + | chr2_2:52480070-52480089 | Msa0256970:intron | 50.0% | |
| ! | GGAGTACTCTCCATCATGGT+TGG | + | chr2_2:52481292-52481311 | Msa0256970:exon | 50.0% |
| CATGGTGTGTCCAACCATGA+TGG | - | chr2_2:52481305-52481324 | None:intergenic | 50.0% | |
| CATCATGGTTGGACACACCA+TGG | + | chr2_2:52481303-52481322 | Msa0256970:three_prime_UTR | 50.0% | |
| CACATGTAGAGTGTGGGGGT+TGG | + | chr2_2:52477068-52477087 | Msa0256970:intron | 55.0% | |
| GATGTGCAGCTTGCACTTGC+AGG | + | chr2_2:52477280-52477299 | Msa0256970:intron | 55.0% | |
| !!! | AGAGAGAGCGTTTTCGTGGG+TGG | + | chr2_2:52479545-52479564 | Msa0256970:intron | 55.0% |
| !!! | GAGAGAGCGTTTTCGTGGGT+GGG | + | chr2_2:52479546-52479565 | Msa0256970:intron | 55.0% |
| TATAGTGAGTGTGGGGGTGG+GGG | + | chr2_2:52479640-52479659 | Msa0256970:intron | 55.0% | |
| CGTCCCTTAGCACAGCCTTA+TGG | + | chr2_2:52480744-52480763 | Msa0256970:CDS | 55.0% | |
| GGTGACCGGGGTTTGAACTC+TGG | - | chr2_2:52478245-52478264 | None:intergenic | 60.0% | |
| !! | AGAGCGTTTTCGTGGGTGGG+TGG | + | chr2_2:52479549-52479568 | Msa0256970:intron | 60.0% |
| TTTCGTGGGTGGGTGGAGTG+AGG | + | chr2_2:52479556-52479575 | Msa0256970:intron | 60.0% | |
| TGGGTGGGTGGAGTGAGGTT+AGG | + | chr2_2:52479561-52479580 | Msa0256970:intron | 60.0% | |
| AGTGAGTGTGGGGGTGGGGG+TGG | + | chr2_2:52479643-52479662 | Msa0256970:intron | 70.0% | |
| GTGAGTGTGGGGGTGGGGGT+GGG | + | chr2_2:52479644-52479663 | Msa0256970:intron | 70.0% | |
| AGTGTGGGGGTGGGGGTGGG+TGG | + | chr2_2:52479647-52479666 | Msa0256970:intron | 75.0% | |
| GTGTGGGGGTGGGGGTGGGT+GGG | + | chr2_2:52479648-52479667 | Msa0256970:intron | 75.0% | |
| TGTGGGGGTGGGGGTGGGTG+GGG | + | chr2_2:52479649-52479668 | Msa0256970:intron | 75.0% | |
| ! | GGGTGGGGGTGGGTGGGGCG+TGG | + | chr2_2:52479654-52479673 | Msa0256970:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 52476871 | 52481642 | 52476871 | ID=Msa0256970;Name=Msa0256970 |
| chr2_2 | mRNA | 52476871 | 52481642 | 52476871 | ID=Msa0256970-mRNA-1;Parent=Msa0256970;Name=Msa0256970-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.66|1|1|1|3|350|273 |
| chr2_2 | exon | 52476871 | 52476912 | 52476871 | ID=Msa0256970-mRNA-1:exon:15756;Parent=Msa0256970-mRNA-1 |
| chr2_2 | exon | 52477289 | 52477406 | 52477289 | ID=Msa0256970-mRNA-1:exon:15757;Parent=Msa0256970-mRNA-1 |
| chr2_2 | exon | 52480631 | 52481642 | 52480631 | ID=Msa0256970-mRNA-1:exon:15758;Parent=Msa0256970-mRNA-1 |
| chr2_2 | CDS | 52476871 | 52476912 | 52476871 | ID=Msa0256970-mRNA-1:cds;Parent=Msa0256970-mRNA-1 |
| chr2_2 | CDS | 52477289 | 52477406 | 52477289 | ID=Msa0256970-mRNA-1:cds;Parent=Msa0256970-mRNA-1 |
| chr2_2 | CDS | 52480631 | 52481292 | 52480631 | ID=Msa0256970-mRNA-1:cds;Parent=Msa0256970-mRNA-1 |
| chr2_2 | three_prime_UTR | 52481293 | 52481642 | 52481293 | ID=Msa0256970-mRNA-1:three_prime_utr;Parent=Msa0256970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
