AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0296290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296290 MtrunA17_Chr2g0318871 78.022 273 19 1 1 232 1 273 5.25e-155 431
Msa0296290 MtrunA17_Chr2g0318901 70.696 273 39 1 1 232 1 273 2.80e-140 394
Msa0296290 MtrunA17_Chr2g0318931 54.647 269 72 6 1 220 5 272 3.49e-94 277
Msa0296290 MtrunA17_Chr8g0355861 39.163 263 114 5 1 219 1 261 9.47e-60 189
Msa0296290 MtrunA17_Chr8g0355871 42.291 227 117 5 1 218 1 222 1.13e-55 177
Msa0296290 MtrunA17_Chr1g0168781 36.704 267 122 7 1 223 1 264 5.90e-55 177
Msa0296290 MtrunA17_Chr8g0355321 48.000 175 79 3 55 219 131 303 7.97e-55 177
Msa0296290 MtrunA17_Chr8g0355311 47.399 173 82 3 53 224 32 196 5.00e-54 172
Msa0296290 MtrunA17_Chr8g0355841 51.572 159 74 2 70 227 362 518 7.67e-54 181
Msa0296290 MtrunA17_Chr8g0355331 51.095 137 67 0 89 225 292 428 5.70e-50 168
Msa0296290 MtrunA17_Chr8g0355831 52.318 151 69 2 70 219 204 352 3.66e-47 159
Msa0296290 MtrunA17_Chr1g0147331 43.478 138 70 5 87 217 187 323 2.81e-30 114
Msa0296290 MtrunA17_Chr1g0146631 43.478 138 70 5 87 217 187 323 2.84e-30 114
Msa0296290 MtrunA17_Chr3g0139431 40.000 140 74 4 89 218 182 321 1.10e-29 112
Msa0296290 MtrunA17_Chr1g0147271 39.130 138 77 3 87 217 246 383 4.56e-27 107
Msa0296290 MtrunA17_Chr1g0147301 39.568 139 75 5 87 217 146 283 4.67e-27 105
Msa0296290 MtrunA17_Chr1g0147261 39.552 134 74 5 89 216 165 297 7.02e-27 105
Msa0296290 MtrunA17_Chr1g0147291 39.568 139 75 5 87 217 128 265 1.15e-26 103
Msa0296290 MtrunA17_Chr1g0147311 39.568 139 75 5 87 217 217 354 1.91e-26 104
Msa0296290 MtrunA17_Chr1g0147321 39.130 138 75 5 87 216 99 235 7.80e-26 101
Msa0296290 MtrunA17_Chr1g0147251 36.842 133 79 3 89 216 108 240 4.00e-24 96.3
Msa0296290 MtrunA17_Chr1g0147241 37.037 135 80 4 87 216 176 310 1.82e-23 95.9
Msa0296290 MtrunA17_Chr3g0144421 33.333 144 87 5 84 218 159 302 1.46e-16 77.0
Msa0296290 MtrunA17_Chr4g0034821 33.557 149 89 6 82 220 145 293 7.58e-16 75.1
Msa0296290 MtrunA17_Chr3g0138231 30.872 149 93 4 82 220 120 268 4.59e-15 72.4
Msa0296290 MtrunA17_Chr3g0144451 32.215 149 91 5 82 220 129 277 5.52e-14 69.7
Msa0296290 MtrunA17_Chr4g0034731 30.986 142 86 6 89 218 291 432 1.35e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296290 AT5G25610.1 34.659 176 100 8 56 216 214 389 1.71e-24 100
Msa0296290 AT1G49320.1 33.333 147 77 6 89 217 135 278 1.87e-14 71.2

Find 42 sgRNAs with CRISPR-Local

Find 425 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCCTTATGGTGTTTATTAT+TGG 0.188467 2_3:+49400945 Msa0296290:CDS
TTGTCATTTCCTTGGAAATA+AGG 0.195752 2_3:+49401396 Msa0296290:CDS
AAATCCTTAGGAACATTAAT+TGG 0.198984 2_3:+49401064 Msa0296290:CDS
TGGTGCCAATGTTGCTGTTT+AGG 0.294080 2_3:+49401459 Msa0296290:CDS
CACTGCCTGAAGAAGAATAT+TGG 0.300262 2_3:+49395983 Msa0296290:CDS
GCATTGTCCATACCTAAATT+AGG 0.353560 2_3:-49401433 None:intergenic
GCTTCCCAATATTCTTCTTC+AGG 0.355894 2_3:-49395988 None:intergenic
AAGAATATTGGGAAGCTGTT+TGG 0.365258 2_3:+49395995 Msa0296290:CDS
GGATTTGCAATTTCAAAACT+TGG 0.388201 2_3:+49401085 Msa0296290:CDS
TTAGGTATGGACAATGCTTA+TGG 0.390250 2_3:+49401439 Msa0296290:CDS
CGTCCCTTAGCACAGCCTTA+TGG 0.391614 2_3:+49400932 Msa0296290:intron
AACCCTGTTTGTCATTTCCT+TGG 0.395882 2_3:+49401388 Msa0296290:CDS
GATGTGCAGCTTGCACTTGC+AGG 0.411503 2_3:+49395946 Msa0296290:intron
TTGTTCATGTTTATCTATGA+AGG 0.411973 2_3:-49401134 None:intergenic
ACTGCCTGAAGAAGAATATT+GGG 0.412787 2_3:+49395984 Msa0296290:CDS
TTTCCAAGGAAATGACAAAC+AGG 0.416413 2_3:-49401391 None:intergenic
ATAGAGTCAGTGCAAAATCT+TGG 0.422753 2_3:+49401163 Msa0296290:CDS
ACTTGCCATGCTGATACTTC+AGG 0.425351 2_3:+49401316 Msa0296290:CDS
AGAAAGCAGTGATGTGTCAT+AGG 0.434072 2_3:+49401188 Msa0296290:CDS
TCTCGCAGAGAAGTGGGAAT+AGG 0.443200 2_3:-49396027 None:intergenic
AAATAACAACCTTGAGGTCC+AGG 0.452077 2_3:-49396060 None:intergenic
TAGAAGTTCTCGCAGAGAAG+TGG 0.467184 2_3:-49396034 None:intergenic
GTTCTATCATTTGCCACCAA+TGG 0.470174 2_3:-49401274 None:intergenic
ATCCAATAATAAACACCATA+AGG 0.472288 2_3:-49400947 None:intergenic
CTTCTTCAGGCAGTGATGCA+TGG 0.473820 2_3:-49395975 None:intergenic
TCATAGGTTGAACTTTCAAA+AGG 0.480588 2_3:+49401204 Msa0296290:CDS
AAATCCAATTAATGTTCCTA+AGG 0.483573 2_3:-49401068 None:intergenic
ATAAAATAGCCTTATTTCCA+AGG 0.498608 2_3:-49401405 None:intergenic
CAGATTATGAAAGGTGATCC+TGG 0.507016 2_3:+49401361 Msa0296290:CDS
CTGCGAGAACTTCTAAAGCC+TGG 0.511075 2_3:+49396042 Msa0296290:CDS
GAAGTGGGAATAGGAGCGTT+CGG 0.512656 2_3:-49396018 None:intergenic
ATGGGTACCTAATTTAGGTA+TGG 0.514414 2_3:+49401426 Msa0296290:CDS
AAATGAAAACGAGAAGGTGA+TGG 0.546087 2_3:-49395560 None:intergenic
TGTAAAGAATAAACCCAAGA+AGG 0.556296 2_3:+49401021 Msa0296290:CDS
CTTCTAAAGCCTGGACCTCA+AGG 0.560362 2_3:+49396051 Msa0296290:CDS
AGAAGTTCTCGCAGAGAAGT+GGG 0.568792 2_3:-49396033 None:intergenic
GTACTCCTAAACAGCAACAT+TGG 0.581094 2_3:-49401464 None:intergenic
ATGCTTCATCAGATTATGAA+AGG 0.582000 2_3:+49401352 Msa0296290:CDS
TGACAAACAGGGTTACTACC+AGG 0.606419 2_3:-49401379 None:intergenic
GAACTGAAATGAAAACGAGA+AGG 0.613747 2_3:-49395566 None:intergenic
TTCCAAGGAAATGACAAACA+GGG 0.636533 2_3:-49401390 None:intergenic
TCATGCCTGAAGTATCAGCA+TGG 0.692679 2_3:-49401321 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATTA+TGG + chr2_3:49395874-49395893 Msa0296290:intron 0.0%
!!! ATCTAAAATAGTAAATTTTA+TGG + chr2_3:49396202-49396221 Msa0296290:intron 10.0%
!!! TCTAAAATAGTAAATTTTAT+GGG + chr2_3:49396203-49396222 Msa0296290:intron 10.0%
!!! TAGATGTTTTTTTTTTTTTT+TGG - chr2_3:49396851-49396870 None:intergenic 10.0%
!! TTTGATTAATATTAAAAATG+GGG - chr2_3:49398301-49398320 None:intergenic 10.0%
!!! ATTTTTAATTGTTTTTTTTG+GGG - chr2_3:49398567-49398586 None:intergenic 10.0%
!!! CTATTTTTAATTGTTTTTTT+TGG - chr2_3:49398569-49398588 None:intergenic 10.0%
!! TTCTTATTAATTAAAATTAG+TGG + chr2_3:49399971-49399990 Msa0296290:intron 10.0%
!!! CTAATATAGAAATTTTTTAT+TGG + chr2_3:49400285-49400304 Msa0296290:intron 10.0%
!! CTAAATAAATAACTAAATAA+AGG - chr2_3:49400424-49400443 None:intergenic 10.0%
!!! TTTGATAAAAGTATATATTA+AGG - chr2_3:49400484-49400503 None:intergenic 10.0%
!!! GTTGGTTTTTTTTTTTTTTA+GGG + chr2_3:49395761-49395780 Msa0296290:intron 15.0%
!!! CTAAAATAGTAAATTTTATG+GGG + chr2_3:49396204-49396223 Msa0296290:intron 15.0%
!!! AATTATACCACTAAATTTTT+TGG - chr2_3:49396328-49396347 None:intergenic 15.0%
!! AAAAAATTTAGTGGTATAAT+TGG + chr2_3:49396327-49396346 Msa0296290:intron 15.0%
!! AAAAATTTAGTGGTATAATT+GGG + chr2_3:49396328-49396347 Msa0296290:intron 15.0%
!!! TTTTAGATGTTTTTTTTTTG+TGG - chr2_3:49396745-49396764 None:intergenic 15.0%
!! GTAAAAAAAAAAAAACATGT+GGG - chr2_3:49396792-49396811 None:intergenic 15.0%
!! TGGTAAAAAAAAAAATATGT+GGG - chr2_3:49396979-49396998 None:intergenic 15.0%
!! TTGGTAAAAAAAAAAATATG+TGG - chr2_3:49396980-49396999 None:intergenic 15.0%
!! ATTAATTGTTTAACATATTC+CGG + chr2_3:49397070-49397089 Msa0296290:intron 15.0%
!!! TTTTTTTTTGGTGAATAAAT+TGG - chr2_3:49397176-49397195 None:intergenic 15.0%
!! ATTAGAAAGAAAAAAGAAAT+GGG - chr2_3:49397205-49397224 None:intergenic 15.0%
!! AATTAGAAAGAAAAAAGAAA+TGG - chr2_3:49397206-49397225 None:intergenic 15.0%
!! TTATCTAATAATTGATGTAA+CGG + chr2_3:49397481-49397500 Msa0296290:intron 15.0%
!!! TTTTTAATTGTTTTTTTTGG+GGG - chr2_3:49398566-49398585 None:intergenic 15.0%
!! ATTAAAAATAGATTCAATAG+AGG + chr2_3:49398578-49398597 Msa0296290:intron 15.0%
!! TCTGTTATTAATTGTAAATT+GGG - chr2_3:49398819-49398838 None:intergenic 15.0%
!! TTCTGTTATTAATTGTAAAT+TGG - chr2_3:49398820-49398839 None:intergenic 15.0%
!!! ATGTTTTTTTAGTAGAATTT+AGG + chr2_3:49399305-49399324 Msa0296290:intron 15.0%
!! TTACACAATTATTCAAATAT+TGG + chr2_3:49399901-49399920 Msa0296290:intron 15.0%
!!! TATAGAAATTTTTTATTGGA+AGG + chr2_3:49400289-49400308 Msa0296290:intron 15.0%
!! TTAACATTCCATTAAATTAT+TGG - chr2_3:49400625-49400644 None:intergenic 15.0%
!!! AAGATTTTTTTTTCACTTTT+AGG + chr2_3:49400754-49400773 Msa0296290:intron 15.0%
!! TCATAAATAGGTTTAAATTA+GGG - chr2_3:49400794-49400813 None:intergenic 15.0%
!!! TACTTTAATTGCCAAATTTT+AGG - chr2_3:49395696-49395715 None:intergenic 20.0%
!!! GGTTGGTTTTTTTTTTTTTT+AGG + chr2_3:49395760-49395779 Msa0296290:intron 20.0%
!! AATATTAAATAACAACCTTG+AGG - chr2_3:49396069-49396088 None:intergenic 20.0%
!! GGAGATGAAAAAATTAATAA+AGG - chr2_3:49396295-49396314 None:intergenic 20.0%
!!! AAATTTTTTGGTTTCAACTT+TGG - chr2_3:49396316-49396335 None:intergenic 20.0%
!! GGTAAAAAAAAAAAAACATG+TGG - chr2_3:49396793-49396812 None:intergenic 20.0%
!!! TTTTTTTTTTTTTTGGTGAC+CGG - chr2_3:49396844-49396863 None:intergenic 20.0%
!! TTGGTAAAAAAAAAACATGT+GGG - chr2_3:49396901-49396920 None:intergenic 20.0%
!! TTTGGTAAAAAAAAAACATG+TGG - chr2_3:49396902-49396921 None:intergenic 20.0%
!!! TCTTTAAGATGGATTAAATT+GGG - chr2_3:49397015-49397034 None:intergenic 20.0%
!!! TTCTTTAAGATGGATTAAAT+TGG - chr2_3:49397016-49397035 None:intergenic 20.0%
!! TTAATCCATCTTAAAGAAAA+TGG + chr2_3:49397018-49397037 Msa0296290:intron 20.0%
!! TGAATAAATTGGAAAAACTT+TGG - chr2_3:49397165-49397184 None:intergenic 20.0%
!!! AATGGGAAAAACTTTTTTTT+TGG - chr2_3:49397188-49397207 None:intergenic 20.0%
!! AAATTAAACTTCAATCATAC+TGG - chr2_3:49397462-49397481 None:intergenic 20.0%
!! TATCTAATAATTGATGTAAC+GGG + chr2_3:49397482-49397501 Msa0296290:intron 20.0%
!! ACTTGTAACATTATATTTGT+TGG + chr2_3:49397948-49397967 Msa0296290:intron 20.0%
!!! TTTTAATTGTTTTTTTTGGG+GGG - chr2_3:49398565-49398584 None:intergenic 20.0%
!! AAGAGTAAAAATCTATCATT+GGG - chr2_3:49398690-49398709 None:intergenic 20.0%
!!! ATCCTCGTAAAATAAAATTT+TGG - chr2_3:49398755-49398774 None:intergenic 20.0%
!! GAAAAAAAAAACAAGAAAAG+AGG - chr2_3:49398946-49398965 None:intergenic 20.0%
!!! AGTATAAAACATGTTTGTTA+AGG + chr2_3:49399071-49399090 Msa0296290:intron 20.0%
!! GTGTAATTAAAAAACTTCAT+TGG - chr2_3:49399125-49399144 None:intergenic 20.0%
!! TTGTAAAAAAGAATAGATGT+TGG + chr2_3:49399213-49399232 Msa0296290:intron 20.0%
!! TTAAATTGGGAACAATATTA+AGG + chr2_3:49399251-49399270 Msa0296290:intron 20.0%
!!! AGAATTTAGGATATACTTTA+AGG + chr2_3:49399318-49399337 Msa0296290:intron 20.0%
!! TGAAGAAACTTTACTTATTA+AGG + chr2_3:49400033-49400052 Msa0296290:intron 20.0%
!!! CTATTATTTTCTTCTTTCAA+TGG - chr2_3:49400080-49400099 None:intergenic 20.0%
!! CATTGAAAGAAGAAAATAAT+AGG + chr2_3:49400078-49400097 Msa0296290:intron 20.0%
!!! TTTTTTTCTATTTTAACCGT+GGG - chr2_3:49400160-49400179 None:intergenic 20.0%
!!! ATTTTTTTCTATTTTAACCG+TGG - chr2_3:49400161-49400180 None:intergenic 20.0%
!!! CTCTTGTCAATTTTATTTAT+GGG + chr2_3:49400224-49400243 Msa0296290:intron 20.0%
!! TAAGGAATTAATAACTTCAA+TGG - chr2_3:49400466-49400485 None:intergenic 20.0%
!! TTCATTGTATAAAAGTAAGA+AGG + chr2_3:49400592-49400611 Msa0296290:intron 20.0%
!! GAATTATGCCAATAATTTAA+TGG + chr2_3:49400614-49400633 Msa0296290:intron 20.0%
!!! ATTTTTTTTTCACTTTTAGG+TGG + chr2_3:49400757-49400776 Msa0296290:intron 20.0%
!! GTCATAAATAGGTTTAAATT+AGG - chr2_3:49400795-49400814 None:intergenic 20.0%
!! ATTAAAAACCTTGAAAAAGA+GGG + chr2_3:49400977-49400996 Msa0296290:CDS 20.0%
!!! AGAATTATTAAGTGTTGAGA+TGG - chr2_3:49395629-49395648 None:intergenic 25.0%
! TCTCAACACTTAATAATTCT+TGG + chr2_3:49395629-49395648 Msa0296290:intron 25.0%
! TAAGTTTATAGTACATCAGT+TGG - chr2_3:49395665-49395684 None:intergenic 25.0%
! TTAAACAACCTCCTAAAATT+TGG + chr2_3:49395682-49395701 Msa0296290:intron 25.0%
!! TTTAATTGCCAAATTTTAGG+AGG - chr2_3:49395693-49395712 None:intergenic 25.0%
!!! TTTTTTTTTTAGGGAAGAGT+TGG + chr2_3:49395770-49395789 Msa0296290:intron 25.0%
! GTTGAAACCAAAAAATTTAG+TGG + chr2_3:49396318-49396337 Msa0296290:intron 25.0%
! AAACCATTGAATTTAGTAAG+AGG - chr2_3:49396495-49396514 None:intergenic 25.0%
!! AAGTTCACAAAGACATTTTT+AGG - chr2_3:49396659-49396678 None:intergenic 25.0%
!!! TGTTTTTTTTTTGTGGTGAT+CGG - chr2_3:49396738-49396757 None:intergenic 25.0%
!!! AATTGGGTTTTTGGTAAATT+TGG - chr2_3:49396814-49396833 None:intergenic 25.0%
!!! TTTTTTTTTTTTTGGTGACC+GGG - chr2_3:49396843-49396862 None:intergenic 25.0%
!!! AATTGGGTTTTTGGTAAATT+TGG - chr2_3:49396814-49396833 None:intergenic 25.0%
!!! GTGTTAAGATGGATTAAATT+GGG - chr2_3:49396936-49396955 None:intergenic 25.0%
!!! AGTGTTAAGATGGATTAAAT+TGG - chr2_3:49396937-49396956 None:intergenic 25.0%
! TTTACACTTTAGTGTTAAGA+TGG - chr2_3:49396947-49396966 None:intergenic 25.0%
!!! AATTGGGTTTTTGGTAAATT+TGG - chr2_3:49396814-49396833 None:intergenic 25.0%
!!! AACTACCATTTTCTTTAAGA+TGG - chr2_3:49397026-49397045 None:intergenic 25.0%
! TAACCATAATTTACGATAAC+AGG - chr2_3:49397142-49397161 None:intergenic 25.0%
! TGAAATATATTACTGTAGAC+TGG + chr2_3:49397245-49397264 Msa0296290:intron 25.0%
! AAATTACAACCACATAACAA+AGG + chr2_3:49397313-49397332 Msa0296290:intron 25.0%
! AATTACAACCACATAACAAA+GGG + chr2_3:49397314-49397333 Msa0296290:intron 25.0%
! TCAGATCATTTGTATCAATT+TGG - chr2_3:49397622-49397641 None:intergenic 25.0%
!!! TTTTTTGGTAAATTGTGGTA+TGG - chr2_3:49397691-49397710 None:intergenic 25.0%
!!! GTGATTTTTTTGGTAAATTG+TGG - chr2_3:49397696-49397715 None:intergenic 25.0%
!!! TTCTTCTCTTGTGATTTTTT+TGG - chr2_3:49397706-49397725 None:intergenic 25.0%
! TTAACTAAATTGTCTGTTGT+TGG + chr2_3:49397799-49397818 Msa0296290:intron 25.0%
!! CATAACTGAAATTTGGAATA+AGG - chr2_3:49397878-49397897 None:intergenic 25.0%
!!! TACACAAACTTTATTTTGGT+GGG - chr2_3:49398220-49398239 None:intergenic 25.0%
!!! ATGGTACACAAACTTTATTT+TGG - chr2_3:49398224-49398243 None:intergenic 25.0%
! ATTAATATTAAAAATGGGGC+TGG - chr2_3:49398297-49398316 None:intergenic 25.0%
! ATTTGTTCCAAAAAAGAGAA+CGG - chr2_3:49398498-49398517 None:intergenic 25.0%
! GAAAATTTCTTGGATTAACT+GGG - chr2_3:49398526-49398545 None:intergenic 25.0%
!!! TTTAATTGTTTTTTTTGGGG+GGG - chr2_3:49398564-49398583 None:intergenic 25.0%
! GAAGAGTAAAAATCTATCAT+TGG - chr2_3:49398691-49398710 None:intergenic 25.0%
!!! TGCCAAAATTTTATTTTACG+AGG + chr2_3:49398750-49398769 Msa0296290:intron 25.0%
! TAATATTCATGATTCTTGGT+TGG - chr2_3:49398853-49398872 None:intergenic 25.0%
! GTGTTAATATTCATGATTCT+TGG - chr2_3:49398857-49398876 None:intergenic 25.0%
!! TTCCACAAAAGTATGTTATT+TGG - chr2_3:49398879-49398898 None:intergenic 25.0%
! CAATTAAAAAACTCTTCAAG+TGG - chr2_3:49399164-49399183 None:intergenic 25.0%
! TGCACTAAACTAAAAAAAAC+TGG + chr2_3:49399182-49399201 Msa0296290:intron 25.0%
!! ACTTACTTCTTAACGATTTT+AGG + chr2_3:49399458-49399477 Msa0296290:intron 25.0%
!! ATTTACACCTTAGTGTTTTT+AGG + chr2_3:49399497-49399516 Msa0296290:intron 25.0%
! GTGTTGCAAATATATATTTG+AGG - chr2_3:49399539-49399558 None:intergenic 25.0%
!!! CAACTTTTTTCTTTGATTCA+TGG - chr2_3:49399653-49399672 None:intergenic 25.0%
! TTAAGGATTTCAACCTATTA+AGG + chr2_3:49400050-49400069 Msa0296290:intron 25.0%
!! TTATTTTCTTCTTTCAATGG+AGG - chr2_3:49400077-49400096 None:intergenic 25.0%
! TAATTACTAACGCTTATACA+AGG + chr2_3:49400108-49400127 Msa0296290:intron 25.0%
!!! TTTTTTCTATTTTAACCGTG+GGG - chr2_3:49400159-49400178 None:intergenic 25.0%
!!! GCTCTTGTCAATTTTATTTA+TGG + chr2_3:49400223-49400242 Msa0296290:intron 25.0%
! GAATTAATAACTTCAATGGT+AGG - chr2_3:49400462-49400481 None:intergenic 25.0%
! TTTAAACCTATTTATGACAC+AGG + chr2_3:49400797-49400816 Msa0296290:intron 25.0%
!! GTTCATAGAAAAAGTTTGTT+GGG - chr2_3:49400868-49400887 None:intergenic 25.0%
! TGTTCATAGAAAAAGTTTGT+TGG - chr2_3:49400869-49400888 None:intergenic 25.0%
! ATCCAATAATAAACACCATA+AGG - chr2_3:49400950-49400969 None:intergenic 25.0%
! CATTAAAAACCTTGAAAAAG+AGG + chr2_3:49400976-49400995 Msa0296290:CDS 25.0%
!! AATTTTTGTTCAACCTTCTT+GGG - chr2_3:49401037-49401056 None:intergenic 25.0%
!! AAATTTTTGTTCAACCTTCT+TGG - chr2_3:49401038-49401057 None:intergenic 25.0%
!! AAATTTTGTGCAAAATCCTT+AGG + chr2_3:49401052-49401071 Msa0296290:CDS 25.0%
! AAATCCTTAGGAACATTAAT+TGG + chr2_3:49401064-49401083 Msa0296290:CDS 25.0%
! AAATCCAATTAATGTTCCTA+AGG - chr2_3:49401071-49401090 None:intergenic 25.0%
! TTGTTCATGTTTATCTATGA+AGG - chr2_3:49401137-49401156 None:intergenic 25.0%
!! TTTTATTGTCATGAAGTTCA+TGG + chr2_3:49401232-49401251 Msa0296290:CDS 25.0%
!!! ATAAAATAGCCTTATTTCCA+AGG - chr2_3:49401408-49401427 None:intergenic 25.0%
!!! TTGGAAATAAGGCTATTTTA+TGG + chr2_3:49401407-49401426 Msa0296290:CDS 25.0%
!!! TGGAAATAAGGCTATTTTAT+GGG + chr2_3:49401408-49401427 Msa0296290:CDS 25.0%
!! ATTTTATGGGTACCTAATTT+AGG + chr2_3:49401421-49401440 Msa0296290:CDS 25.0%
AATTTAGTGGTATAATTGGG+AGG + chr2_3:49396331-49396350 Msa0296290:intron 30.0%
GTCATAGTGTTATACTACAA+CGG - chr2_3:49396430-49396449 None:intergenic 30.0%
GTTGTAGTATAACACTATGA+CGG + chr2_3:49396429-49396448 Msa0296290:intron 30.0%
TCTTCAACTGTATCATAGTA+TGG - chr2_3:49396532-49396551 None:intergenic 30.0%
!! TTCACAAAGACATTTTTAGG+TGG - chr2_3:49396656-49396675 None:intergenic 30.0%
!!! TTTTTTTTTTGTGGTGATCG+GGG - chr2_3:49396736-49396755 None:intergenic 30.0%
!!! GTTTTTTTTTTGTGGTGATC+GGG - chr2_3:49396737-49396756 None:intergenic 30.0%
!!! TTTTTTTTTTTTGGTGACCG+GGG - chr2_3:49396842-49396861 None:intergenic 30.0%
!!! GATGGATTAAATTGGGTTTT+TGG - chr2_3:49396929-49396948 None:intergenic 30.0%
!!! GATGGATTAAATTGGGTTTT+TGG - chr2_3:49396929-49396948 None:intergenic 30.0%
TTGTTTAACATATTCCGGAA+CGG + chr2_3:49397075-49397094 Msa0296290:intron 30.0%
TGACCTGTTATCGTAAATTA+TGG + chr2_3:49397136-49397155 Msa0296290:intron 30.0%
AATTTGATACTCTTTCAGCT+GGG - chr2_3:49397298-49397317 None:intergenic 30.0%
TAATTTGATACTCTTTCAGC+TGG - chr2_3:49397299-49397318 None:intergenic 30.0%
!! TTTTGTTACCCTTTGTTATG+TGG - chr2_3:49397325-49397344 None:intergenic 30.0%
TCTGGGTATTTATCTGTAAT+GGG - chr2_3:49397371-49397390 None:intergenic 30.0%
!!! TTGCTTTTTCCTATCATTTG+TGG - chr2_3:49397414-49397433 None:intergenic 30.0%
TTAAACTTCAATCATACTGG+TGG - chr2_3:49397459-49397478 None:intergenic 30.0%
ATATGAGATTAAAAGCTGAG+CGG + chr2_3:49397569-49397588 Msa0296290:intron 30.0%
CTGATCACATAACTGAAATT+TGG - chr2_3:49397885-49397904 None:intergenic 30.0%
!! TATTTGTTGATGACAACAAG+TGG + chr2_3:49397917-49397936 Msa0296290:intron 30.0%
TGCTACTAATAAAATGGCTA+CGG - chr2_3:49398142-49398161 None:intergenic 30.0%
!! TAGCCATTTTATTAGTAGCA+AGG + chr2_3:49398142-49398161 Msa0296290:intron 30.0%
TGACCTTGCTACTAATAAAA+TGG - chr2_3:49398148-49398167 None:intergenic 30.0%
TATTAGTAGCAAGGTCAAAA+AGG + chr2_3:49398151-49398170 Msa0296290:intron 30.0%
!!! GTACACAAACTTTATTTTGG+TGG - chr2_3:49398221-49398240 None:intergenic 30.0%
! ATTTGGCATTACTTGCTAAA+TGG - chr2_3:49398443-49398462 None:intergenic 30.0%
!!! GTTCTCTTTTTTGGAACAAA+TGG + chr2_3:49398497-49398516 Msa0296290:intron 30.0%
GGAAAATTTCTTGGATTAAC+TGG - chr2_3:49398527-49398546 None:intergenic 30.0%
!! CAGACTTCAAAAGTACTAAT+CGG + chr2_3:49398661-49398680 Msa0296290:intron 30.0%
AGTAAAAATCTATCATTGGG+TGG - chr2_3:49398687-49398706 None:intergenic 30.0%
! AAACTTCCTTTTCTCTATCT+GGG - chr2_3:49398795-49398814 None:intergenic 30.0%
! CACCAAATAACATACTTTTG+TGG + chr2_3:49398874-49398893 Msa0296290:intron 30.0%
!!! CCACTATTTTTTACACAATC+TGG - chr2_3:49398993-49399012 None:intergenic 30.0%
CCAGATTGTGTAAAAAATAG+TGG + chr2_3:49398990-49399009 Msa0296290:intron 30.0%
TCTACAATTTATCGTCACAA+TGG + chr2_3:49399613-49399632 Msa0296290:intron 30.0%
!!! AAGTTTTGTTTTGCTCACTA+AGG + chr2_3:49399707-49399726 Msa0296290:intron 30.0%
!!! TTTGGTTTTGTTATAGTGAG+TGG + chr2_3:49399820-49399839 Msa0296290:intron 30.0%
!!! TTGGTTTTGTTATAGTGAGT+GGG + chr2_3:49399821-49399840 Msa0296290:intron 30.0%
TATTGGAAGGTGATTAAAAG+TGG + chr2_3:49400302-49400321 Msa0296290:intron 30.0%
TCTTCTTAACTAGTGTATTC+GGG - chr2_3:49400400-49400419 None:intergenic 30.0%
GTCTTCTTAACTAGTGTATT+CGG - chr2_3:49400401-49400420 None:intergenic 30.0%
TATGAACATGAACTTTATCC+TGG + chr2_3:49400881-49400900 Msa0296290:intron 30.0%
! AGCCTTATGGTGTTTATTAT+TGG + chr2_3:49400945-49400964 Msa0296290:CDS 30.0%
!! TAGTATATCCCTCTTTTTCA+AGG - chr2_3:49400988-49401007 None:intergenic 30.0%
TGTAAAGAATAAACCCAAGA+AGG + chr2_3:49401021-49401040 Msa0296290:CDS 30.0%
GGATTTGCAATTTCAAAACT+TGG + chr2_3:49401085-49401104 Msa0296290:CDS 30.0%
! TCATAGGTTGAACTTTCAAA+AGG + chr2_3:49401204-49401223 Msa0296290:CDS 30.0%
ATGCTTCATCAGATTATGAA+AGG + chr2_3:49401352-49401371 Msa0296290:CDS 30.0%
! TTGTCATTTCCTTGGAAATA+AGG + chr2_3:49401396-49401415 Msa0296290:CDS 30.0%
AAATGAAAACGAGAAGGTGA+TGG - chr2_3:49395563-49395582 None:intergenic 35.0%
GAACTGAAATGAAAACGAGA+AGG - chr2_3:49395569-49395588 None:intergenic 35.0%
! AGTGTTGAGATGGAAATGAA+AGG - chr2_3:49395619-49395638 None:intergenic 35.0%
TTACTTACACATGTAGAGTG+TGG + chr2_3:49395736-49395755 Msa0296290:intron 35.0%
TACTTACACATGTAGAGTGT+GGG + chr2_3:49395737-49395756 Msa0296290:intron 35.0%
ACTGCCTGAAGAAGAATATT+GGG + chr2_3:49395984-49396003 Msa0296290:CDS 35.0%
AAGAATATTGGGAAGCTGTT+TGG + chr2_3:49395995-49396014 Msa0296290:CDS 35.0%
GCTAACAAGAGATTGAATGT+TGG - chr2_3:49396381-49396400 None:intergenic 35.0%
GTGTTATACTACAACGGTAA+AGG - chr2_3:49396424-49396443 None:intergenic 35.0%
GAGCCTCTTACTAAATTCAA+TGG + chr2_3:49396489-49396508 Msa0296290:intron 35.0%
GGCAATGCATAAAATACGTA+AGG + chr2_3:49396697-49396716 Msa0296290:intron 35.0%
AAAAACCCAATTTAATCCCC+CGG + chr2_3:49396822-49396841 Msa0296290:intron 35.0%
!!! TTTTTTTTTTTGGTGACCGG+GGG - chr2_3:49396841-49396860 None:intergenic 35.0%
GTTAGAAGTAAAAACCGTTC+CGG - chr2_3:49397092-49397111 None:intergenic 35.0%
ACGATAACAGGTCAATGATA+AGG - chr2_3:49397130-49397149 None:intergenic 35.0%
ATTTGATACTCTTTCAGCTG+GGG - chr2_3:49397297-49397316 None:intergenic 35.0%
TGGGTATTTATCTGTAATGG+GGG - chr2_3:49397369-49397388 None:intergenic 35.0%
CTGGGTATTTATCTGTAATG+GGG - chr2_3:49397370-49397389 None:intergenic 35.0%
GTCTGGGTATTTATCTGTAA+TGG - chr2_3:49397372-49397391 None:intergenic 35.0%
TACAGATAAATACCCAGACA+AGG + chr2_3:49397373-49397392 Msa0296290:intron 35.0%
TAAATACCCAGACAAGGTAA+AGG + chr2_3:49397379-49397398 Msa0296290:intron 35.0%
AAATACCCAGACAAGGTAAA+GGG + chr2_3:49397380-49397399 Msa0296290:intron 35.0%
! CTTTTTCCTATCATTTGTGG+TGG - chr2_3:49397411-49397430 None:intergenic 35.0%
TGATAGGAAAAAGCAAAGCT+AGG + chr2_3:49397418-49397437 Msa0296290:intron 35.0%
TTTGGATAGAAAGAAACGCT+CGG - chr2_3:49397528-49397547 None:intergenic 35.0%
TTTCTTGTGTGTGGGTAATT+TGG - chr2_3:49397546-49397565 None:intergenic 35.0%
! GCTCAGCTTTTAATCTCATA+TGG - chr2_3:49397570-49397589 None:intergenic 35.0%
TTGTATCAATTTGGCACCTT+AGG - chr2_3:49397613-49397632 None:intergenic 35.0%
AAATGATCTGACACATGTTC+AGG + chr2_3:49397631-49397650 Msa0296290:intron 35.0%
TAAAAGTCAGTCTCTTTGCT+TGG - chr2_3:49397846-49397865 None:intergenic 35.0%
!! GCAAAGAGACTGACTTTTAA+AGG + chr2_3:49397847-49397866 Msa0296290:intron 35.0%
TACTAATAAAATGGCTACGG+TGG - chr2_3:49398139-49398158 None:intergenic 35.0%
AAAACCATACCATCAATCCA+AGG + chr2_3:49398192-49398211 Msa0296290:intron 35.0%
GGTGGTTTGATACTAATGTT+GGG - chr2_3:49398260-49398279 None:intergenic 35.0%
!! AGAGTTTTAGCATCTCGATA+CGG - chr2_3:49398381-49398400 None:intergenic 35.0%
! CATTACTTGCTAAATGGTGT+TGG - chr2_3:49398437-49398456 None:intergenic 35.0%
GAGGATAAGGGAGTTTAATT+TGG - chr2_3:49398460-49398479 None:intergenic 35.0%
AAAAAAGAGAACGGAGGTTT+GGG - chr2_3:49398489-49398508 None:intergenic 35.0%
AGGAGGTTAGGAAAATTTCT+TGG - chr2_3:49398536-49398555 None:intergenic 35.0%
AATAGAGGAAATGATACCTG+CGG + chr2_3:49398593-49398612 Msa0296290:intron 35.0%
AAGAAGGAAAGAAAGTAGAC+CGG + chr2_3:49398624-49398643 Msa0296290:intron 35.0%
! CAAACTTCCTTTTCTCTATC+TGG - chr2_3:49398796-49398815 None:intergenic 35.0%
GTAATGTGTTTAGTTGTCAG+AGG - chr2_3:49398968-49398987 None:intergenic 35.0%
CTTAACAAAAAAGACAGACG+TGG + chr2_3:49399027-49399046 Msa0296290:intron 35.0%
AGAGTGAATGTCAATTAGTG+AGG + chr2_3:49399368-49399387 Msa0296290:intron 35.0%
!!! TACACCTTAGTGTTTTTAGG+TGG + chr2_3:49399500-49399519 Msa0296290:intron 35.0%
TACACCACCTAAAAACACTA+AGG - chr2_3:49399507-49399526 None:intergenic 35.0%
!!! TGGTTTTGTTATAGTGAGTG+GGG + chr2_3:49399822-49399841 Msa0296290:intron 35.0%
TTTCAATGGAGGTCCTTAAT+AGG - chr2_3:49400066-49400085 None:intergenic 35.0%
GAAATATTAACTAGTGCTCC+AGG + chr2_3:49400246-49400265 Msa0296290:intron 35.0%
CTTCTTAACTAGTGTATTCG+GGG - chr2_3:49400399-49400418 None:intergenic 35.0%
! CTCACTAACTTGTGTCTTAA+AGG - chr2_3:49400654-49400673 None:intergenic 35.0%
ACACAAGTTAGTGAGTCAAA+AGG + chr2_3:49400659-49400678 Msa0296290:intron 35.0%
TCAACACCTGTGTCATAAAT+AGG - chr2_3:49400806-49400825 None:intergenic 35.0%
ATAGAGTCAGTGCAAAATCT+TGG + chr2_3:49401163-49401182 Msa0296290:CDS 35.0%
! TCATGGAACAACAGCTTTTA+TGG + chr2_3:49401249-49401268 Msa0296290:CDS 35.0%
! AACAGCTTTTATGGTTCCAT+TGG + chr2_3:49401258-49401277 Msa0296290:CDS 35.0%
TTCCAAGGAAATGACAAACA+GGG - chr2_3:49401393-49401412 None:intergenic 35.0%
TTTCCAAGGAAATGACAAAC+AGG - chr2_3:49401394-49401413 None:intergenic 35.0%
ATGGGTACCTAATTTAGGTA+TGG + chr2_3:49401426-49401445 Msa0296290:CDS 35.0%
GCATTGTCCATACCTAAATT+AGG - chr2_3:49401436-49401455 None:intergenic 35.0%
TTAGGTATGGACAATGCTTA+TGG + chr2_3:49401439-49401458 Msa0296290:CDS 35.0%
ACTTACACATGTAGAGTGTG+GGG + chr2_3:49395738-49395757 Msa0296290:intron 40.0%
CACTGCCTGAAGAAGAATAT+TGG + chr2_3:49395983-49396002 Msa0296290:CDS 40.0%
GCTTCCCAATATTCTTCTTC+AGG - chr2_3:49395991-49396010 None:intergenic 40.0%
AAATAACAACCTTGAGGTCC+AGG - chr2_3:49396063-49396082 None:intergenic 40.0%
TGTGAACTTAGCTGATCAGT+TGG + chr2_3:49396670-49396689 Msa0296290:intron 40.0%
!! CTTAGCTGATCAGTTGGTAA+AGG + chr2_3:49396676-49396695 Msa0296290:intron 40.0%
! GGGGGATTAAATTGGGTTTT+TGG - chr2_3:49396823-49396842 None:intergenic 40.0%
! GGGTATTTATCTGTAATGGG+GGG - chr2_3:49397368-49397387 None:intergenic 40.0%
TTGAACCCTTTACCTTGTCT+GGG - chr2_3:49397388-49397407 None:intergenic 40.0%
GTTCAACCACCACAAATGAT+AGG + chr2_3:49397402-49397421 Msa0296290:intron 40.0%
AGGAAAAAGCAAAGCTAGGA+CGG + chr2_3:49397422-49397441 Msa0296290:intron 40.0%
TCGGGTCTTTCATCAAAAAG+AGG - chr2_3:49397509-49397528 None:intergenic 40.0%
TTGGATAGAAAGAAACGCTC+GGG - chr2_3:49397527-49397546 None:intergenic 40.0%
CATATGGCTTTCTTGTGTGT+GGG - chr2_3:49397554-49397573 None:intergenic 40.0%
TCATATGGCTTTCTTGTGTG+TGG - chr2_3:49397555-49397574 None:intergenic 40.0%
TATCAATTTGGCACCTTAGG+CGG - chr2_3:49397610-49397629 None:intergenic 40.0%
CATGTTCAGGAAACACTATG+TGG + chr2_3:49397644-49397663 Msa0296290:intron 40.0%
CCAAATGCTCAACTTTGTGT+GGG - chr2_3:49397763-49397782 None:intergenic 40.0%
ACCAAATGCTCAACTTTGTG+TGG - chr2_3:49397764-49397783 None:intergenic 40.0%
TGAAATGTATTCGCTTGGGT+GGG - chr2_3:49398115-49398134 None:intergenic 40.0%
TGGCTGAAATGTATTCGCTT+GGG - chr2_3:49398119-49398138 None:intergenic 40.0%
TAGTAGCAAGGTCAAAAAGG+CGG + chr2_3:49398154-49398173 Msa0296290:intron 40.0%
!!! CTTTATTTTGGTGGGATCCT+TGG - chr2_3:49398212-49398231 None:intergenic 40.0%
GTTTGATACTAATGTTGGGC+GGG - chr2_3:49398256-49398275 None:intergenic 40.0%
GGTTTGATACTAATGTTGGG+CGG - chr2_3:49398257-49398276 None:intergenic 40.0%
CGGTGGTTTGATACTAATGT+TGG - chr2_3:49398261-49398280 None:intergenic 40.0%
! ATTAAAAATGGGGCTGGTGT+GGG - chr2_3:49398291-49398310 None:intergenic 40.0%
! TATTAAAAATGGGGCTGGTG+TGG - chr2_3:49398292-49398311 None:intergenic 40.0%
!! AGTTTTAGCATCTCGATACG+GGG - chr2_3:49398379-49398398 None:intergenic 40.0%
!! GAGTTTTAGCATCTCGATAC+GGG - chr2_3:49398380-49398399 None:intergenic 40.0%
GGGTTGAAAATAGGAGTTTG+TGG - chr2_3:49398407-49398426 None:intergenic 40.0%
! TACTTGCTAAATGGTGTTGG+CGG - chr2_3:49398434-49398453 None:intergenic 40.0%
AAAAAGAGAACGGAGGTTTG+GGG - chr2_3:49398488-49398507 None:intergenic 40.0%
CAAAAAAGAGAACGGAGGTT+TGG - chr2_3:49398490-49398509 None:intergenic 40.0%
!!! CAAACCTCCGTTCTCTTTTT+TGG + chr2_3:49398488-49398507 Msa0296290:intron 40.0%
TGTTCCAAAAAAGAGAACGG+AGG - chr2_3:49398495-49398514 None:intergenic 40.0%
ATAGAGGAAATGATACCTGC+GGG + chr2_3:49398594-49398613 Msa0296290:intron 40.0%
TGAAGTCAAGATTATCGGGT+TGG - chr2_3:49398713-49398732 None:intergenic 40.0%
!!! GGTTTTGTTATAGTGAGTGG+GGG + chr2_3:49399823-49399842 Msa0296290:intron 40.0%
TTCAACAATAACAAGCCCCA+CGG + chr2_3:49400141-49400160 Msa0296290:intron 40.0%
! TGAAATTGATGACCTCCCAA+CGG + chr2_3:49400823-49400842 Msa0296290:intron 40.0%
GTGTGTCATCAATTTCCGTT+GGG - chr2_3:49400841-49400860 None:intergenic 40.0%
TGTGTGTCATCAATTTCCGT+TGG - chr2_3:49400842-49400861 None:intergenic 40.0%
!! TGCATGTTCATTGTTTTGCC+AGG - chr2_3:49400902-49400921 None:intergenic 40.0%
AGAAAGCAGTGATGTGTCAT+AGG + chr2_3:49401188-49401207 Msa0296290:CDS 40.0%
! AGCTTTTATGGTTCCATTGG+TGG + chr2_3:49401261-49401280 Msa0296290:CDS 40.0%
GTTCTATCATTTGCCACCAA+TGG - chr2_3:49401277-49401296 None:intergenic 40.0%
CAGATTATGAAAGGTGATCC+TGG + chr2_3:49401361-49401380 Msa0296290:CDS 40.0%
! AACCCTGTTTGTCATTTCCT+TGG + chr2_3:49401388-49401407 Msa0296290:CDS 40.0%
CTTACACATGTAGAGTGTGG+GGG + chr2_3:49395739-49395758 Msa0296290:intron 45.0%
AGAAGTTCTCGCAGAGAAGT+GGG - chr2_3:49396036-49396055 None:intergenic 45.0%
TAGAAGTTCTCGCAGAGAAG+TGG - chr2_3:49396037-49396056 None:intergenic 45.0%
CACGCGATGTAATACTCTGT+CGG - chr2_3:49396357-49396376 None:intergenic 45.0%
GTTGAACCCTTTACCTTGTC+TGG - chr2_3:49397389-49397408 None:intergenic 45.0%
!! AAAAGCTGAGCGGTTGCTTT+TGG + chr2_3:49397579-49397598 Msa0296290:intron 45.0%
ATCAATTTGGCACCTTAGGC+GGG - chr2_3:49397609-49397628 None:intergenic 45.0%
AATGCTCAACTTTGTGTGGG+TGG - chr2_3:49397760-49397779 None:intergenic 45.0%
CCCACACAAAGTTGAGCATT+TGG + chr2_3:49397760-49397779 Msa0296290:intron 45.0%
! CTCATTCTGACAGGTGGATT+TGG - chr2_3:49397987-49398006 None:intergenic 45.0%
AATCCACCTGTCAGAATGAG+TGG + chr2_3:49397987-49398006 Msa0296290:intron 45.0%
ATCCACCTGTCAGAATGAGT+GGG + chr2_3:49397988-49398007 Msa0296290:intron 45.0%
AAATGTATTCGCTTGGGTGG+GGG - chr2_3:49398113-49398132 None:intergenic 45.0%
GAAATGTATTCGCTTGGGTG+GGG - chr2_3:49398114-49398133 None:intergenic 45.0%
CTGAAATGTATTCGCTTGGG+TGG - chr2_3:49398116-49398135 None:intergenic 45.0%
GTGGCTGAAATGTATTCGCT+TGG - chr2_3:49398120-49398139 None:intergenic 45.0%
! GGATCCTTGGATTGATGGTA+TGG - chr2_3:49398199-49398218 None:intergenic 45.0%
!! TAAATGGTGTTGGCGGATGA+GGG - chr2_3:49398427-49398446 None:intergenic 45.0%
AAAAGAGAACGGAGGTTTGG+GGG - chr2_3:49398487-49398506 None:intergenic 45.0%
!!! TTTTTTTTGGGGGGGATGTG+AGG - chr2_3:49398556-49398575 None:intergenic 45.0%
AAGAAAGTAGACCGGAAGAG+AGG + chr2_3:49398632-49398651 Msa0296290:intron 45.0%
CGCGTGAAGTCAAGATTATC+GGG - chr2_3:49398717-49398736 None:intergenic 45.0%
CCGCGTGAAGTCAAGATTAT+CGG - chr2_3:49398718-49398737 None:intergenic 45.0%
CCGATAATCTTGACTTCACG+CGG + chr2_3:49398715-49398734 Msa0296290:intron 45.0%
! CTCTATCTGGGATTGCCTAT+CGG - chr2_3:49398783-49398802 None:intergenic 45.0%
GGCAATCCCAGATAGAGAAA+AGG + chr2_3:49398786-49398805 Msa0296290:intron 45.0%
TCATGATTCTTGGTTGGCAG+AGG - chr2_3:49398847-49398866 None:intergenic 45.0%
!!! CTTCTTTTTGAGGCGACTTC+AGG - chr2_3:49398915-49398934 None:intergenic 45.0%
CTGAAGTCGCCTCAAAAAGA+AGG + chr2_3:49398913-49398932 Msa0296290:intron 45.0%
! GGCTTTGCTCCTTCTTTTTG+AGG - chr2_3:49398925-49398944 None:intergenic 45.0%
!!! GAAAGAGAGAGCGTTTTCGT+GGG + chr2_3:49399729-49399748 Msa0296290:intron 45.0%
! TTTGTTATAGTGAGTGGGGG+TGG + chr2_3:49399826-49399845 Msa0296290:intron 45.0%
TTGTTATAGTGAGTGGGGGT+GGG + chr2_3:49399827-49399846 Msa0296290:intron 45.0%
AGTCTCCTTAACTAGTGTCC+TGG - chr2_3:49400267-49400286 None:intergenic 45.0%
TGTCATCAATTTCCGTTGGG+AGG - chr2_3:49400838-49400857 None:intergenic 45.0%
ACACCATAAGGCTGTGCTAA+GGG - chr2_3:49400938-49400957 None:intergenic 45.0%
AACACCATAAGGCTGTGCTA+AGG - chr2_3:49400939-49400958 None:intergenic 45.0%
ACTTGCCATGCTGATACTTC+AGG + chr2_3:49401316-49401335 Msa0296290:CDS 45.0%
! TCATGCCTGAAGTATCAGCA+TGG - chr2_3:49401324-49401343 None:intergenic 45.0%
TGACAAACAGGGTTACTACC+AGG - chr2_3:49401382-49401401 None:intergenic 45.0%
!! ATTTGATTAATATTAAAAAT+GGG - chr2_3:49398302-49398321 None:intergenic 5.0%
!! AATTTGATTAATATTAAAAA+TGG - chr2_3:49398303-49398322 None:intergenic 5.0%
!!! TATTTTTAATTGTTTTTTTT+GGG - chr2_3:49398568-49398587 None:intergenic 5.0%
!! TTATTTAAAAATGATTAAAT+TGG + chr2_3:49399237-49399256 Msa0296290:intron 5.0%
!! TATTTAAAAATGATTAAATT+GGG + chr2_3:49399238-49399257 Msa0296290:intron 5.0%
!! TAAATAAATAACTAAATAAA+GGG - chr2_3:49400423-49400442 None:intergenic 5.0%
CTTCTTCAGGCAGTGATGCA+TGG - chr2_3:49395978-49395997 None:intergenic 50.0%
!! GAAGTGGGAATAGGAGCGTT+CGG - chr2_3:49396021-49396040 None:intergenic 50.0%
TCTCGCAGAGAAGTGGGAAT+AGG - chr2_3:49396030-49396049 None:intergenic 50.0%
!! CTGCGAGAACTTCTAAAGCC+TGG + chr2_3:49396042-49396061 Msa0296290:CDS 50.0%
!! CTTCTAAAGCCTGGACCTCA+AGG + chr2_3:49396051-49396070 Msa0296290:CDS 50.0%
GGTGACCGGGGGATTAAATT+GGG - chr2_3:49396830-49396849 None:intergenic 50.0%
TGGTGACCGGGGGATTAAAT+TGG - chr2_3:49396831-49396850 None:intergenic 50.0%
!! GCTTTTGGAAAACCCGCCTA+AGG + chr2_3:49397594-49397613 Msa0296290:intron 50.0%
CAACTTTGTGTGGGTGGATG+TGG - chr2_3:49397754-49397773 None:intergenic 50.0%
CTTGGCGTCTGATGCGTAAT+AGG - chr2_3:49397828-49397847 None:intergenic 50.0%
! TCACTTGTTAGCTTGGGAGG+AGG - chr2_3:49398061-49398080 None:intergenic 50.0%
AATGTATTCGCTTGGGTGGG+GGG - chr2_3:49398112-49398131 None:intergenic 50.0%
TGGTGGGATCCTTGGATTGA+TGG - chr2_3:49398204-49398223 None:intergenic 50.0%
ACTAATGTTGGGCGGGAAGT+AGG - chr2_3:49398249-49398268 None:intergenic 50.0%
GGCGGTTTAACTCTGTTTGG+TGG - chr2_3:49398329-49398348 None:intergenic 50.0%
AGGGGCGGTTTAACTCTGTT+TGG - chr2_3:49398332-49398351 None:intergenic 50.0%
TTTAGCATCTCGATACGGGG+AGG - chr2_3:49398376-49398395 None:intergenic 50.0%
GGCGGATGAGGGTTGAAAAT+AGG - chr2_3:49398416-49398435 None:intergenic 50.0%
!! CTAAATGGTGTTGGCGGATG+AGG - chr2_3:49398428-49398447 None:intergenic 50.0%
! TTTGGGGGTACGGAGGATAA+GGG - chr2_3:49398472-49398491 None:intergenic 50.0%
GTCTGTCTTGTCCTCTCTTC+CGG - chr2_3:49398646-49398665 None:intergenic 50.0%
GACTTCACGCGGTCAATCAA+AGG + chr2_3:49398726-49398745 Msa0296290:intron 50.0%
TTACGAGGATCACCACCGAT+AGG + chr2_3:49398765-49398784 Msa0296290:intron 50.0%
! TATCTGGGATTGCCTATCGG+TGG - chr2_3:49398780-49398799 None:intergenic 50.0%
!!! GGAAAGAGAGAGCGTTTTCG+TGG + chr2_3:49399728-49399747 Msa0296290:intron 50.0%
! CGTGTGTCTGCGATGTGTTT+TGG + chr2_3:49399802-49399821 Msa0296290:intron 50.0%
TGTTATAGTGAGTGGGGGTG+GGG + chr2_3:49399828-49399847 Msa0296290:intron 50.0%
GTGCTCCAGGACACTAGTTA+AGG + chr2_3:49400259-49400278 Msa0296290:intron 50.0%
CACATGTAGAGTGTGGGGGT+TGG + chr2_3:49395743-49395762 Msa0296290:intron 55.0%
GATGTGCAGCTTGCACTTGC+AGG + chr2_3:49395946-49395965 Msa0296290:intron 55.0%
GGTGATCGGGGTTTGAACTC+TGG - chr2_3:49396724-49396743 None:intergenic 55.0%
TGTGGGTGGATGTGGCATGA+TGG - chr2_3:49397746-49397765 None:intergenic 55.0%
AGCCCACTCATTCTGACAGG+TGG - chr2_3:49397993-49398012 None:intergenic 55.0%
TGCAGCCCACTCATTCTGAC+AGG - chr2_3:49397996-49398015 None:intergenic 55.0%
! TTGGGAGGAGGAGAAAGTGC+GGG - chr2_3:49398049-49398068 None:intergenic 55.0%
CTTGGGAGGAGGAGAAAGTG+CGG - chr2_3:49398050-49398069 None:intergenic 55.0%
! GCGTCACTTGTTAGCTTGGG+AGG - chr2_3:49398064-49398083 None:intergenic 55.0%
! GCGGCGTCACTTGTTAGCTT+GGG - chr2_3:49398067-49398086 None:intergenic 55.0%
AGGGTGAAGCTTGGAAGTGG+CGG - chr2_3:49398086-49398105 None:intergenic 55.0%
AGGAGGGTGAAGCTTGGAAG+TGG - chr2_3:49398089-49398108 None:intergenic 55.0%
! AAAAATGGGGCTGGTGTGGG+AGG - chr2_3:49398288-49398307 None:intergenic 55.0%
AGAGTTAAACCGCCCCTCCT+CGG + chr2_3:49398335-49398354 Msa0296290:intron 55.0%
GAGGAATAATCGCCGAGGAG+GGG - chr2_3:49398350-49398369 None:intergenic 55.0%
GGAGGAATAATCGCCGAGGA+GGG - chr2_3:49398351-49398370 None:intergenic 55.0%
AGGAGGAATAATCGCCGAGG+AGG - chr2_3:49398352-49398371 None:intergenic 55.0%
GGTAGGAGGAATAATCGCCG+AGG - chr2_3:49398355-49398374 None:intergenic 55.0%
! GTTTGGGGGTACGGAGGATA+AGG - chr2_3:49398473-49398492 None:intergenic 55.0%
AGAACGGAGGTTTGGGGGTA+CGG - chr2_3:49398482-49398501 None:intergenic 55.0%
!! TTTTTGGGGGGGATGTGAGG+AGG - chr2_3:49398553-49398572 None:intergenic 55.0%
!! ACCTGCGGGAGCTTTGAAGA+AGG + chr2_3:49398608-49398627 Msa0296290:intron 55.0%
TCCTTCTTCAAAGCTCCCGC+AGG - chr2_3:49398612-49398631 None:intergenic 55.0%
!!! AGAGAGAGCGTTTTCGTGGG+TGG + chr2_3:49399732-49399751 Msa0296290:intron 55.0%
!!! GAGAGAGCGTTTTCGTGGGT+GGG + chr2_3:49399733-49399752 Msa0296290:intron 55.0%
TGGGTGTGTGGAGTGAGGTT+AGG + chr2_3:49399752-49399771 Msa0296290:intron 55.0%
GTTATAGTGAGTGGGGGTGG+GGG + chr2_3:49399829-49399848 Msa0296290:intron 55.0%
CGTCCCTTAGCACAGCCTTA+TGG + chr2_3:49400932-49400951 Msa0296290:intron 55.0%
! GGCGGCGTCACTTGTTAGCT+TGG - chr2_3:49398068-49398087 None:intergenic 60.0%
GTTGGGCGGGAAGTAGGAGA+TGG - chr2_3:49398243-49398262 None:intergenic 60.0%
GAATAATCGCCGAGGAGGGG+CGG - chr2_3:49398347-49398366 None:intergenic 60.0%
TCTCGATACGGGGAGGTAGG+AGG - chr2_3:49398369-49398388 None:intergenic 60.0%
GCATCTCGATACGGGGAGGT+AGG - chr2_3:49398372-49398391 None:intergenic 60.0%
! CGTTTTCGTGGGTGGGTGTG+TGG + chr2_3:49399740-49399759 Msa0296290:intron 60.0%
GTATTCGCTTGGGTGGGGGG+AGG - chr2_3:49398109-49398128 None:intergenic 65.0%
! AATGGGGCTGGTGTGGGAGG+TGG - chr2_3:49398285-49398304 None:intergenic 65.0%
! ACGGAGGTTTGGGGGTACGG+AGG - chr2_3:49398479-49398498 None:intergenic 65.0%
GGGGGGGATGTGAGGAGGTT+AGG - chr2_3:49398548-49398567 None:intergenic 65.0%
GTGGGTGGGTGTGTGGAGTG+AGG + chr2_3:49399747-49399766 Msa0296290:intron 65.0%
ATAGTGAGTGGGGGTGGGGG+TGG + chr2_3:49399832-49399851 Msa0296290:intron 65.0%
TAGTGAGTGGGGGTGGGGGT+GGG + chr2_3:49399833-49399852 Msa0296290:intron 65.0%
GGGGGGAGGAGGGTGAAGCT+TGG - chr2_3:49398095-49398114 None:intergenic 70.0%
TCGCTTGGGTGGGGGGAGGA+GGG - chr2_3:49398105-49398124 None:intergenic 70.0%
TTCGCTTGGGTGGGGGGAGG+AGG - chr2_3:49398106-49398125 None:intergenic 70.0%
CTGGTGTGGGAGGTGGTCGG+TGG - chr2_3:49398278-49398297 None:intergenic 70.0%
! GGGCTGGTGTGGGAGGTGGT+CGG - chr2_3:49398281-49398300 None:intergenic 70.0%
TGAGTGGGGGTGGGGGTGGG+TGG + chr2_3:49399836-49399855 Msa0296290:intron 75.0%
GAGTGGGGGTGGGGGTGGGT+GGG + chr2_3:49399837-49399856 Msa0296290:intron 75.0%
AGTGGGGGTGGGGGTGGGTG+GGG + chr2_3:49399838-49399857 Msa0296290:intron 75.0%
! GGGTGGGGGTGGGTGGGGCG+TGG + chr2_3:49399843-49399862 Msa0296290:intron 85.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 49395552 49401480 49395552 ID=Msa0296290;Name=Msa0296290
chr2_3 mRNA 49395552 49401480 49395552 ID=Msa0296290-mRNA-1;Parent=Msa0296290;Name=Msa0296290-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.5|0.33|1|0.5|0.66|3|0|232
chr2_3 exon 49395552 49395593 49395552 ID=Msa0296290-mRNA-1:exon:15556;Parent=Msa0296290-mRNA-1
chr2_3 exon 49395955 49396072 49395955 ID=Msa0296290-mRNA-1:exon:15557;Parent=Msa0296290-mRNA-1
chr2_3 exon 49400942 49401480 49400942 ID=Msa0296290-mRNA-1:exon:15558;Parent=Msa0296290-mRNA-1
chr2_3 CDS 49395552 49395593 49395552 ID=Msa0296290-mRNA-1:cds;Parent=Msa0296290-mRNA-1
chr2_3 CDS 49395955 49396072 49395955 ID=Msa0296290-mRNA-1:cds;Parent=Msa0296290-mRNA-1
chr2_3 CDS 49400942 49401480 49400942 ID=Msa0296290-mRNA-1:cds;Parent=Msa0296290-mRNA-1
Gene Sequence

>Msa0296290

ATGGGATTCCATCACCTTCTCGTTTTCATTTCAGTTCTCTCTCTTGCACTTGCAGGAGAAAGCCATGCATCACTGCCTGAAGAAGAATATTGGGAAGCTGTTTGGCCGAACGCTCCTATTCCCACTTCTCTGCGAGAACTTCTAAAGCCTGGACCTCAAGCACAGCCTTATGGTGTTTATTATTGGATGCATGACATTAAAAACCTTGAAAAAGAGGGATATACTATTGATGAGATGTGTGTAAAGAATAAACCCAAGAAGGTTGAACAAAAATTTTGTGCAAAATCCTTAGGAACATTAATTGGATTTGCAATTTCAAAACTTGGAAAAAATATTCAATCACTTTCAAGCTCCTTCATAGATAAACATGAACAATACAAAATAGAGTCAGTGCAAAATCTTGGAGAGAAAGCAGTGATGTGTCATAGGTTGAACTTTCAAAAGGTTGTATTTTATTGTCATGAAGTTCATGGAACAACAGCTTTTATGGTTCCATTGGTGGCAAATGATAGAACAAAAACTCATGCAATAGCTACTTGCCATGCTGATACTTCAGGCATGAATCAACATATGCTTCATCAGATTATGAAAGGTGATCCTGGTAGTAACCCTGTTTGTCATTTCCTTGGAAATAAGGCTATTTTATGGGTACCTAATTTAGGTATGGACAATGCTTATGGTGCCAATGTTGCTGTTTAG

Protein sequence

>Msa0296290

MGFHHLLVFISVLSLALAGESHASLPEEEYWEAVWPNAPIPTSLRELLKPGPQAQPYGVYYWMHDIKNLEKEGYTIDEMCVKNKPKKVEQKFCAKSLGTLIGFAISKLGKNIQSLSSSFIDKHEQYKIESVQNLGEKAVMCHRLNFQKVVFYCHEVHGTTAFMVPLVANDRTKTHAIATCHADTSGMNQHMLHQIMKGDPGSNPVCHFLGNKAILWVPNLGMDNAYGANVAV*