Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0296290 | XP_003596533.1 | 78.022 | 273 | 19 | 1 | 1 | 232 | 1 | 273 | 5.71e-151 | 431 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0296290 | sp|P21747|EA92_VICFA | 38.951 | 267 | 117 | 8 | 1 | 224 | 1 | 264 | 3.71e-56 | 182 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0217130 | Msa0296290 | 0.802256 | 6.115265e-49 | -8.615850e-47 |
Msa0217160 | Msa0296290 | 0.802468 | 5.529560e-49 | -8.615850e-47 |
Msa0256970 | Msa0296290 | 0.874405 | 6.931622e-68 | -8.615850e-47 |
Msa0296290 | Msa1385290 | 0.809265 | 2.061284e-50 | -8.615850e-47 |
Msa0296290 | Msa1385330 | 0.806904 | 6.558837e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0296290 | MtrunA17_Chr2g0318871 | 78.022 | 273 | 19 | 1 | 1 | 232 | 1 | 273 | 5.25e-155 | 431 |
Msa0296290 | MtrunA17_Chr2g0318901 | 70.696 | 273 | 39 | 1 | 1 | 232 | 1 | 273 | 2.80e-140 | 394 |
Msa0296290 | MtrunA17_Chr2g0318931 | 54.647 | 269 | 72 | 6 | 1 | 220 | 5 | 272 | 3.49e-94 | 277 |
Msa0296290 | MtrunA17_Chr8g0355861 | 39.163 | 263 | 114 | 5 | 1 | 219 | 1 | 261 | 9.47e-60 | 189 |
Msa0296290 | MtrunA17_Chr8g0355871 | 42.291 | 227 | 117 | 5 | 1 | 218 | 1 | 222 | 1.13e-55 | 177 |
Msa0296290 | MtrunA17_Chr1g0168781 | 36.704 | 267 | 122 | 7 | 1 | 223 | 1 | 264 | 5.90e-55 | 177 |
Msa0296290 | MtrunA17_Chr8g0355321 | 48.000 | 175 | 79 | 3 | 55 | 219 | 131 | 303 | 7.97e-55 | 177 |
Msa0296290 | MtrunA17_Chr8g0355311 | 47.399 | 173 | 82 | 3 | 53 | 224 | 32 | 196 | 5.00e-54 | 172 |
Msa0296290 | MtrunA17_Chr8g0355841 | 51.572 | 159 | 74 | 2 | 70 | 227 | 362 | 518 | 7.67e-54 | 181 |
Msa0296290 | MtrunA17_Chr8g0355331 | 51.095 | 137 | 67 | 0 | 89 | 225 | 292 | 428 | 5.70e-50 | 168 |
Msa0296290 | MtrunA17_Chr8g0355831 | 52.318 | 151 | 69 | 2 | 70 | 219 | 204 | 352 | 3.66e-47 | 159 |
Msa0296290 | MtrunA17_Chr1g0147331 | 43.478 | 138 | 70 | 5 | 87 | 217 | 187 | 323 | 2.81e-30 | 114 |
Msa0296290 | MtrunA17_Chr1g0146631 | 43.478 | 138 | 70 | 5 | 87 | 217 | 187 | 323 | 2.84e-30 | 114 |
Msa0296290 | MtrunA17_Chr3g0139431 | 40.000 | 140 | 74 | 4 | 89 | 218 | 182 | 321 | 1.10e-29 | 112 |
Msa0296290 | MtrunA17_Chr1g0147271 | 39.130 | 138 | 77 | 3 | 87 | 217 | 246 | 383 | 4.56e-27 | 107 |
Msa0296290 | MtrunA17_Chr1g0147301 | 39.568 | 139 | 75 | 5 | 87 | 217 | 146 | 283 | 4.67e-27 | 105 |
Msa0296290 | MtrunA17_Chr1g0147261 | 39.552 | 134 | 74 | 5 | 89 | 216 | 165 | 297 | 7.02e-27 | 105 |
Msa0296290 | MtrunA17_Chr1g0147291 | 39.568 | 139 | 75 | 5 | 87 | 217 | 128 | 265 | 1.15e-26 | 103 |
Msa0296290 | MtrunA17_Chr1g0147311 | 39.568 | 139 | 75 | 5 | 87 | 217 | 217 | 354 | 1.91e-26 | 104 |
Msa0296290 | MtrunA17_Chr1g0147321 | 39.130 | 138 | 75 | 5 | 87 | 216 | 99 | 235 | 7.80e-26 | 101 |
Msa0296290 | MtrunA17_Chr1g0147251 | 36.842 | 133 | 79 | 3 | 89 | 216 | 108 | 240 | 4.00e-24 | 96.3 |
Msa0296290 | MtrunA17_Chr1g0147241 | 37.037 | 135 | 80 | 4 | 87 | 216 | 176 | 310 | 1.82e-23 | 95.9 |
Msa0296290 | MtrunA17_Chr3g0144421 | 33.333 | 144 | 87 | 5 | 84 | 218 | 159 | 302 | 1.46e-16 | 77.0 |
Msa0296290 | MtrunA17_Chr4g0034821 | 33.557 | 149 | 89 | 6 | 82 | 220 | 145 | 293 | 7.58e-16 | 75.1 |
Msa0296290 | MtrunA17_Chr3g0138231 | 30.872 | 149 | 93 | 4 | 82 | 220 | 120 | 268 | 4.59e-15 | 72.4 |
Msa0296290 | MtrunA17_Chr3g0144451 | 32.215 | 149 | 91 | 5 | 82 | 220 | 129 | 277 | 5.52e-14 | 69.7 |
Msa0296290 | MtrunA17_Chr4g0034731 | 30.986 | 142 | 86 | 6 | 89 | 218 | 291 | 432 | 1.35e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0296290 | AT5G25610.1 | 34.659 | 176 | 100 | 8 | 56 | 216 | 214 | 389 | 1.71e-24 | 100 |
Msa0296290 | AT1G49320.1 | 33.333 | 147 | 77 | 6 | 89 | 217 | 135 | 278 | 1.87e-14 | 71.2 |
Find 42 sgRNAs with CRISPR-Local
Find 425 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCCTTATGGTGTTTATTAT+TGG | 0.188467 | 2_3:+49400945 | Msa0296290:CDS |
TTGTCATTTCCTTGGAAATA+AGG | 0.195752 | 2_3:+49401396 | Msa0296290:CDS |
AAATCCTTAGGAACATTAAT+TGG | 0.198984 | 2_3:+49401064 | Msa0296290:CDS |
TGGTGCCAATGTTGCTGTTT+AGG | 0.294080 | 2_3:+49401459 | Msa0296290:CDS |
CACTGCCTGAAGAAGAATAT+TGG | 0.300262 | 2_3:+49395983 | Msa0296290:CDS |
GCATTGTCCATACCTAAATT+AGG | 0.353560 | 2_3:-49401433 | None:intergenic |
GCTTCCCAATATTCTTCTTC+AGG | 0.355894 | 2_3:-49395988 | None:intergenic |
AAGAATATTGGGAAGCTGTT+TGG | 0.365258 | 2_3:+49395995 | Msa0296290:CDS |
GGATTTGCAATTTCAAAACT+TGG | 0.388201 | 2_3:+49401085 | Msa0296290:CDS |
TTAGGTATGGACAATGCTTA+TGG | 0.390250 | 2_3:+49401439 | Msa0296290:CDS |
CGTCCCTTAGCACAGCCTTA+TGG | 0.391614 | 2_3:+49400932 | Msa0296290:intron |
AACCCTGTTTGTCATTTCCT+TGG | 0.395882 | 2_3:+49401388 | Msa0296290:CDS |
GATGTGCAGCTTGCACTTGC+AGG | 0.411503 | 2_3:+49395946 | Msa0296290:intron |
TTGTTCATGTTTATCTATGA+AGG | 0.411973 | 2_3:-49401134 | None:intergenic |
ACTGCCTGAAGAAGAATATT+GGG | 0.412787 | 2_3:+49395984 | Msa0296290:CDS |
TTTCCAAGGAAATGACAAAC+AGG | 0.416413 | 2_3:-49401391 | None:intergenic |
ATAGAGTCAGTGCAAAATCT+TGG | 0.422753 | 2_3:+49401163 | Msa0296290:CDS |
ACTTGCCATGCTGATACTTC+AGG | 0.425351 | 2_3:+49401316 | Msa0296290:CDS |
AGAAAGCAGTGATGTGTCAT+AGG | 0.434072 | 2_3:+49401188 | Msa0296290:CDS |
TCTCGCAGAGAAGTGGGAAT+AGG | 0.443200 | 2_3:-49396027 | None:intergenic |
AAATAACAACCTTGAGGTCC+AGG | 0.452077 | 2_3:-49396060 | None:intergenic |
TAGAAGTTCTCGCAGAGAAG+TGG | 0.467184 | 2_3:-49396034 | None:intergenic |
GTTCTATCATTTGCCACCAA+TGG | 0.470174 | 2_3:-49401274 | None:intergenic |
ATCCAATAATAAACACCATA+AGG | 0.472288 | 2_3:-49400947 | None:intergenic |
CTTCTTCAGGCAGTGATGCA+TGG | 0.473820 | 2_3:-49395975 | None:intergenic |
TCATAGGTTGAACTTTCAAA+AGG | 0.480588 | 2_3:+49401204 | Msa0296290:CDS |
AAATCCAATTAATGTTCCTA+AGG | 0.483573 | 2_3:-49401068 | None:intergenic |
ATAAAATAGCCTTATTTCCA+AGG | 0.498608 | 2_3:-49401405 | None:intergenic |
CAGATTATGAAAGGTGATCC+TGG | 0.507016 | 2_3:+49401361 | Msa0296290:CDS |
CTGCGAGAACTTCTAAAGCC+TGG | 0.511075 | 2_3:+49396042 | Msa0296290:CDS |
GAAGTGGGAATAGGAGCGTT+CGG | 0.512656 | 2_3:-49396018 | None:intergenic |
ATGGGTACCTAATTTAGGTA+TGG | 0.514414 | 2_3:+49401426 | Msa0296290:CDS |
AAATGAAAACGAGAAGGTGA+TGG | 0.546087 | 2_3:-49395560 | None:intergenic |
TGTAAAGAATAAACCCAAGA+AGG | 0.556296 | 2_3:+49401021 | Msa0296290:CDS |
CTTCTAAAGCCTGGACCTCA+AGG | 0.560362 | 2_3:+49396051 | Msa0296290:CDS |
AGAAGTTCTCGCAGAGAAGT+GGG | 0.568792 | 2_3:-49396033 | None:intergenic |
GTACTCCTAAACAGCAACAT+TGG | 0.581094 | 2_3:-49401464 | None:intergenic |
ATGCTTCATCAGATTATGAA+AGG | 0.582000 | 2_3:+49401352 | Msa0296290:CDS |
TGACAAACAGGGTTACTACC+AGG | 0.606419 | 2_3:-49401379 | None:intergenic |
GAACTGAAATGAAAACGAGA+AGG | 0.613747 | 2_3:-49395566 | None:intergenic |
TTCCAAGGAAATGACAAACA+GGG | 0.636533 | 2_3:-49401390 | None:intergenic |
TCATGCCTGAAGTATCAGCA+TGG | 0.692679 | 2_3:-49401321 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATATATATATATATTA+TGG | + | chr2_3:49395874-49395893 | Msa0296290:intron | 0.0% |
!!! | ATCTAAAATAGTAAATTTTA+TGG | + | chr2_3:49396202-49396221 | Msa0296290:intron | 10.0% |
!!! | TCTAAAATAGTAAATTTTAT+GGG | + | chr2_3:49396203-49396222 | Msa0296290:intron | 10.0% |
!!! | TAGATGTTTTTTTTTTTTTT+TGG | - | chr2_3:49396851-49396870 | None:intergenic | 10.0% |
!! | TTTGATTAATATTAAAAATG+GGG | - | chr2_3:49398301-49398320 | None:intergenic | 10.0% |
!!! | ATTTTTAATTGTTTTTTTTG+GGG | - | chr2_3:49398567-49398586 | None:intergenic | 10.0% |
!!! | CTATTTTTAATTGTTTTTTT+TGG | - | chr2_3:49398569-49398588 | None:intergenic | 10.0% |
!! | TTCTTATTAATTAAAATTAG+TGG | + | chr2_3:49399971-49399990 | Msa0296290:intron | 10.0% |
!!! | CTAATATAGAAATTTTTTAT+TGG | + | chr2_3:49400285-49400304 | Msa0296290:intron | 10.0% |
!! | CTAAATAAATAACTAAATAA+AGG | - | chr2_3:49400424-49400443 | None:intergenic | 10.0% |
!!! | TTTGATAAAAGTATATATTA+AGG | - | chr2_3:49400484-49400503 | None:intergenic | 10.0% |
!!! | GTTGGTTTTTTTTTTTTTTA+GGG | + | chr2_3:49395761-49395780 | Msa0296290:intron | 15.0% |
!!! | CTAAAATAGTAAATTTTATG+GGG | + | chr2_3:49396204-49396223 | Msa0296290:intron | 15.0% |
!!! | AATTATACCACTAAATTTTT+TGG | - | chr2_3:49396328-49396347 | None:intergenic | 15.0% |
!! | AAAAAATTTAGTGGTATAAT+TGG | + | chr2_3:49396327-49396346 | Msa0296290:intron | 15.0% |
!! | AAAAATTTAGTGGTATAATT+GGG | + | chr2_3:49396328-49396347 | Msa0296290:intron | 15.0% |
!!! | TTTTAGATGTTTTTTTTTTG+TGG | - | chr2_3:49396745-49396764 | None:intergenic | 15.0% |
!! | GTAAAAAAAAAAAAACATGT+GGG | - | chr2_3:49396792-49396811 | None:intergenic | 15.0% |
!! | TGGTAAAAAAAAAAATATGT+GGG | - | chr2_3:49396979-49396998 | None:intergenic | 15.0% |
!! | TTGGTAAAAAAAAAAATATG+TGG | - | chr2_3:49396980-49396999 | None:intergenic | 15.0% |
!! | ATTAATTGTTTAACATATTC+CGG | + | chr2_3:49397070-49397089 | Msa0296290:intron | 15.0% |
!!! | TTTTTTTTTGGTGAATAAAT+TGG | - | chr2_3:49397176-49397195 | None:intergenic | 15.0% |
!! | ATTAGAAAGAAAAAAGAAAT+GGG | - | chr2_3:49397205-49397224 | None:intergenic | 15.0% |
!! | AATTAGAAAGAAAAAAGAAA+TGG | - | chr2_3:49397206-49397225 | None:intergenic | 15.0% |
!! | TTATCTAATAATTGATGTAA+CGG | + | chr2_3:49397481-49397500 | Msa0296290:intron | 15.0% |
!!! | TTTTTAATTGTTTTTTTTGG+GGG | - | chr2_3:49398566-49398585 | None:intergenic | 15.0% |
!! | ATTAAAAATAGATTCAATAG+AGG | + | chr2_3:49398578-49398597 | Msa0296290:intron | 15.0% |
!! | TCTGTTATTAATTGTAAATT+GGG | - | chr2_3:49398819-49398838 | None:intergenic | 15.0% |
!! | TTCTGTTATTAATTGTAAAT+TGG | - | chr2_3:49398820-49398839 | None:intergenic | 15.0% |
!!! | ATGTTTTTTTAGTAGAATTT+AGG | + | chr2_3:49399305-49399324 | Msa0296290:intron | 15.0% |
!! | TTACACAATTATTCAAATAT+TGG | + | chr2_3:49399901-49399920 | Msa0296290:intron | 15.0% |
!!! | TATAGAAATTTTTTATTGGA+AGG | + | chr2_3:49400289-49400308 | Msa0296290:intron | 15.0% |
!! | TTAACATTCCATTAAATTAT+TGG | - | chr2_3:49400625-49400644 | None:intergenic | 15.0% |
!!! | AAGATTTTTTTTTCACTTTT+AGG | + | chr2_3:49400754-49400773 | Msa0296290:intron | 15.0% |
!! | TCATAAATAGGTTTAAATTA+GGG | - | chr2_3:49400794-49400813 | None:intergenic | 15.0% |
!!! | TACTTTAATTGCCAAATTTT+AGG | - | chr2_3:49395696-49395715 | None:intergenic | 20.0% |
!!! | GGTTGGTTTTTTTTTTTTTT+AGG | + | chr2_3:49395760-49395779 | Msa0296290:intron | 20.0% |
!! | AATATTAAATAACAACCTTG+AGG | - | chr2_3:49396069-49396088 | None:intergenic | 20.0% |
!! | GGAGATGAAAAAATTAATAA+AGG | - | chr2_3:49396295-49396314 | None:intergenic | 20.0% |
!!! | AAATTTTTTGGTTTCAACTT+TGG | - | chr2_3:49396316-49396335 | None:intergenic | 20.0% |
!! | GGTAAAAAAAAAAAAACATG+TGG | - | chr2_3:49396793-49396812 | None:intergenic | 20.0% |
!!! | TTTTTTTTTTTTTTGGTGAC+CGG | - | chr2_3:49396844-49396863 | None:intergenic | 20.0% |
!! | TTGGTAAAAAAAAAACATGT+GGG | - | chr2_3:49396901-49396920 | None:intergenic | 20.0% |
!! | TTTGGTAAAAAAAAAACATG+TGG | - | chr2_3:49396902-49396921 | None:intergenic | 20.0% |
!!! | TCTTTAAGATGGATTAAATT+GGG | - | chr2_3:49397015-49397034 | None:intergenic | 20.0% |
!!! | TTCTTTAAGATGGATTAAAT+TGG | - | chr2_3:49397016-49397035 | None:intergenic | 20.0% |
!! | TTAATCCATCTTAAAGAAAA+TGG | + | chr2_3:49397018-49397037 | Msa0296290:intron | 20.0% |
!! | TGAATAAATTGGAAAAACTT+TGG | - | chr2_3:49397165-49397184 | None:intergenic | 20.0% |
!!! | AATGGGAAAAACTTTTTTTT+TGG | - | chr2_3:49397188-49397207 | None:intergenic | 20.0% |
!! | AAATTAAACTTCAATCATAC+TGG | - | chr2_3:49397462-49397481 | None:intergenic | 20.0% |
!! | TATCTAATAATTGATGTAAC+GGG | + | chr2_3:49397482-49397501 | Msa0296290:intron | 20.0% |
!! | ACTTGTAACATTATATTTGT+TGG | + | chr2_3:49397948-49397967 | Msa0296290:intron | 20.0% |
!!! | TTTTAATTGTTTTTTTTGGG+GGG | - | chr2_3:49398565-49398584 | None:intergenic | 20.0% |
!! | AAGAGTAAAAATCTATCATT+GGG | - | chr2_3:49398690-49398709 | None:intergenic | 20.0% |
!!! | ATCCTCGTAAAATAAAATTT+TGG | - | chr2_3:49398755-49398774 | None:intergenic | 20.0% |
!! | GAAAAAAAAAACAAGAAAAG+AGG | - | chr2_3:49398946-49398965 | None:intergenic | 20.0% |
!!! | AGTATAAAACATGTTTGTTA+AGG | + | chr2_3:49399071-49399090 | Msa0296290:intron | 20.0% |
!! | GTGTAATTAAAAAACTTCAT+TGG | - | chr2_3:49399125-49399144 | None:intergenic | 20.0% |
!! | TTGTAAAAAAGAATAGATGT+TGG | + | chr2_3:49399213-49399232 | Msa0296290:intron | 20.0% |
!! | TTAAATTGGGAACAATATTA+AGG | + | chr2_3:49399251-49399270 | Msa0296290:intron | 20.0% |
!!! | AGAATTTAGGATATACTTTA+AGG | + | chr2_3:49399318-49399337 | Msa0296290:intron | 20.0% |
!! | TGAAGAAACTTTACTTATTA+AGG | + | chr2_3:49400033-49400052 | Msa0296290:intron | 20.0% |
!!! | CTATTATTTTCTTCTTTCAA+TGG | - | chr2_3:49400080-49400099 | None:intergenic | 20.0% |
!! | CATTGAAAGAAGAAAATAAT+AGG | + | chr2_3:49400078-49400097 | Msa0296290:intron | 20.0% |
!!! | TTTTTTTCTATTTTAACCGT+GGG | - | chr2_3:49400160-49400179 | None:intergenic | 20.0% |
!!! | ATTTTTTTCTATTTTAACCG+TGG | - | chr2_3:49400161-49400180 | None:intergenic | 20.0% |
!!! | CTCTTGTCAATTTTATTTAT+GGG | + | chr2_3:49400224-49400243 | Msa0296290:intron | 20.0% |
!! | TAAGGAATTAATAACTTCAA+TGG | - | chr2_3:49400466-49400485 | None:intergenic | 20.0% |
!! | TTCATTGTATAAAAGTAAGA+AGG | + | chr2_3:49400592-49400611 | Msa0296290:intron | 20.0% |
!! | GAATTATGCCAATAATTTAA+TGG | + | chr2_3:49400614-49400633 | Msa0296290:intron | 20.0% |
!!! | ATTTTTTTTTCACTTTTAGG+TGG | + | chr2_3:49400757-49400776 | Msa0296290:intron | 20.0% |
!! | GTCATAAATAGGTTTAAATT+AGG | - | chr2_3:49400795-49400814 | None:intergenic | 20.0% |
!! | ATTAAAAACCTTGAAAAAGA+GGG | + | chr2_3:49400977-49400996 | Msa0296290:CDS | 20.0% |
!!! | AGAATTATTAAGTGTTGAGA+TGG | - | chr2_3:49395629-49395648 | None:intergenic | 25.0% |
! | TCTCAACACTTAATAATTCT+TGG | + | chr2_3:49395629-49395648 | Msa0296290:intron | 25.0% |
! | TAAGTTTATAGTACATCAGT+TGG | - | chr2_3:49395665-49395684 | None:intergenic | 25.0% |
! | TTAAACAACCTCCTAAAATT+TGG | + | chr2_3:49395682-49395701 | Msa0296290:intron | 25.0% |
!! | TTTAATTGCCAAATTTTAGG+AGG | - | chr2_3:49395693-49395712 | None:intergenic | 25.0% |
!!! | TTTTTTTTTTAGGGAAGAGT+TGG | + | chr2_3:49395770-49395789 | Msa0296290:intron | 25.0% |
! | GTTGAAACCAAAAAATTTAG+TGG | + | chr2_3:49396318-49396337 | Msa0296290:intron | 25.0% |
! | AAACCATTGAATTTAGTAAG+AGG | - | chr2_3:49396495-49396514 | None:intergenic | 25.0% |
!! | AAGTTCACAAAGACATTTTT+AGG | - | chr2_3:49396659-49396678 | None:intergenic | 25.0% |
!!! | TGTTTTTTTTTTGTGGTGAT+CGG | - | chr2_3:49396738-49396757 | None:intergenic | 25.0% |
!!! | AATTGGGTTTTTGGTAAATT+TGG | - | chr2_3:49396814-49396833 | None:intergenic | 25.0% |
!!! | TTTTTTTTTTTTTGGTGACC+GGG | - | chr2_3:49396843-49396862 | None:intergenic | 25.0% |
!!! | AATTGGGTTTTTGGTAAATT+TGG | - | chr2_3:49396814-49396833 | None:intergenic | 25.0% |
!!! | GTGTTAAGATGGATTAAATT+GGG | - | chr2_3:49396936-49396955 | None:intergenic | 25.0% |
!!! | AGTGTTAAGATGGATTAAAT+TGG | - | chr2_3:49396937-49396956 | None:intergenic | 25.0% |
! | TTTACACTTTAGTGTTAAGA+TGG | - | chr2_3:49396947-49396966 | None:intergenic | 25.0% |
!!! | AATTGGGTTTTTGGTAAATT+TGG | - | chr2_3:49396814-49396833 | None:intergenic | 25.0% |
!!! | AACTACCATTTTCTTTAAGA+TGG | - | chr2_3:49397026-49397045 | None:intergenic | 25.0% |
! | TAACCATAATTTACGATAAC+AGG | - | chr2_3:49397142-49397161 | None:intergenic | 25.0% |
! | TGAAATATATTACTGTAGAC+TGG | + | chr2_3:49397245-49397264 | Msa0296290:intron | 25.0% |
! | AAATTACAACCACATAACAA+AGG | + | chr2_3:49397313-49397332 | Msa0296290:intron | 25.0% |
! | AATTACAACCACATAACAAA+GGG | + | chr2_3:49397314-49397333 | Msa0296290:intron | 25.0% |
! | TCAGATCATTTGTATCAATT+TGG | - | chr2_3:49397622-49397641 | None:intergenic | 25.0% |
!!! | TTTTTTGGTAAATTGTGGTA+TGG | - | chr2_3:49397691-49397710 | None:intergenic | 25.0% |
!!! | GTGATTTTTTTGGTAAATTG+TGG | - | chr2_3:49397696-49397715 | None:intergenic | 25.0% |
!!! | TTCTTCTCTTGTGATTTTTT+TGG | - | chr2_3:49397706-49397725 | None:intergenic | 25.0% |
! | TTAACTAAATTGTCTGTTGT+TGG | + | chr2_3:49397799-49397818 | Msa0296290:intron | 25.0% |
!! | CATAACTGAAATTTGGAATA+AGG | - | chr2_3:49397878-49397897 | None:intergenic | 25.0% |
!!! | TACACAAACTTTATTTTGGT+GGG | - | chr2_3:49398220-49398239 | None:intergenic | 25.0% |
!!! | ATGGTACACAAACTTTATTT+TGG | - | chr2_3:49398224-49398243 | None:intergenic | 25.0% |
! | ATTAATATTAAAAATGGGGC+TGG | - | chr2_3:49398297-49398316 | None:intergenic | 25.0% |
! | ATTTGTTCCAAAAAAGAGAA+CGG | - | chr2_3:49398498-49398517 | None:intergenic | 25.0% |
! | GAAAATTTCTTGGATTAACT+GGG | - | chr2_3:49398526-49398545 | None:intergenic | 25.0% |
!!! | TTTAATTGTTTTTTTTGGGG+GGG | - | chr2_3:49398564-49398583 | None:intergenic | 25.0% |
! | GAAGAGTAAAAATCTATCAT+TGG | - | chr2_3:49398691-49398710 | None:intergenic | 25.0% |
!!! | TGCCAAAATTTTATTTTACG+AGG | + | chr2_3:49398750-49398769 | Msa0296290:intron | 25.0% |
! | TAATATTCATGATTCTTGGT+TGG | - | chr2_3:49398853-49398872 | None:intergenic | 25.0% |
! | GTGTTAATATTCATGATTCT+TGG | - | chr2_3:49398857-49398876 | None:intergenic | 25.0% |
!! | TTCCACAAAAGTATGTTATT+TGG | - | chr2_3:49398879-49398898 | None:intergenic | 25.0% |
! | CAATTAAAAAACTCTTCAAG+TGG | - | chr2_3:49399164-49399183 | None:intergenic | 25.0% |
! | TGCACTAAACTAAAAAAAAC+TGG | + | chr2_3:49399182-49399201 | Msa0296290:intron | 25.0% |
!! | ACTTACTTCTTAACGATTTT+AGG | + | chr2_3:49399458-49399477 | Msa0296290:intron | 25.0% |
!! | ATTTACACCTTAGTGTTTTT+AGG | + | chr2_3:49399497-49399516 | Msa0296290:intron | 25.0% |
! | GTGTTGCAAATATATATTTG+AGG | - | chr2_3:49399539-49399558 | None:intergenic | 25.0% |
!!! | CAACTTTTTTCTTTGATTCA+TGG | - | chr2_3:49399653-49399672 | None:intergenic | 25.0% |
! | TTAAGGATTTCAACCTATTA+AGG | + | chr2_3:49400050-49400069 | Msa0296290:intron | 25.0% |
!! | TTATTTTCTTCTTTCAATGG+AGG | - | chr2_3:49400077-49400096 | None:intergenic | 25.0% |
! | TAATTACTAACGCTTATACA+AGG | + | chr2_3:49400108-49400127 | Msa0296290:intron | 25.0% |
!!! | TTTTTTCTATTTTAACCGTG+GGG | - | chr2_3:49400159-49400178 | None:intergenic | 25.0% |
!!! | GCTCTTGTCAATTTTATTTA+TGG | + | chr2_3:49400223-49400242 | Msa0296290:intron | 25.0% |
! | GAATTAATAACTTCAATGGT+AGG | - | chr2_3:49400462-49400481 | None:intergenic | 25.0% |
! | TTTAAACCTATTTATGACAC+AGG | + | chr2_3:49400797-49400816 | Msa0296290:intron | 25.0% |
!! | GTTCATAGAAAAAGTTTGTT+GGG | - | chr2_3:49400868-49400887 | None:intergenic | 25.0% |
! | TGTTCATAGAAAAAGTTTGT+TGG | - | chr2_3:49400869-49400888 | None:intergenic | 25.0% |
! | ATCCAATAATAAACACCATA+AGG | - | chr2_3:49400950-49400969 | None:intergenic | 25.0% |
! | CATTAAAAACCTTGAAAAAG+AGG | + | chr2_3:49400976-49400995 | Msa0296290:CDS | 25.0% |
!! | AATTTTTGTTCAACCTTCTT+GGG | - | chr2_3:49401037-49401056 | None:intergenic | 25.0% |
!! | AAATTTTTGTTCAACCTTCT+TGG | - | chr2_3:49401038-49401057 | None:intergenic | 25.0% |
!! | AAATTTTGTGCAAAATCCTT+AGG | + | chr2_3:49401052-49401071 | Msa0296290:CDS | 25.0% |
! | AAATCCTTAGGAACATTAAT+TGG | + | chr2_3:49401064-49401083 | Msa0296290:CDS | 25.0% |
! | AAATCCAATTAATGTTCCTA+AGG | - | chr2_3:49401071-49401090 | None:intergenic | 25.0% |
! | TTGTTCATGTTTATCTATGA+AGG | - | chr2_3:49401137-49401156 | None:intergenic | 25.0% |
!! | TTTTATTGTCATGAAGTTCA+TGG | + | chr2_3:49401232-49401251 | Msa0296290:CDS | 25.0% |
!!! | ATAAAATAGCCTTATTTCCA+AGG | - | chr2_3:49401408-49401427 | None:intergenic | 25.0% |
!!! | TTGGAAATAAGGCTATTTTA+TGG | + | chr2_3:49401407-49401426 | Msa0296290:CDS | 25.0% |
!!! | TGGAAATAAGGCTATTTTAT+GGG | + | chr2_3:49401408-49401427 | Msa0296290:CDS | 25.0% |
!! | ATTTTATGGGTACCTAATTT+AGG | + | chr2_3:49401421-49401440 | Msa0296290:CDS | 25.0% |
AATTTAGTGGTATAATTGGG+AGG | + | chr2_3:49396331-49396350 | Msa0296290:intron | 30.0% | |
GTCATAGTGTTATACTACAA+CGG | - | chr2_3:49396430-49396449 | None:intergenic | 30.0% | |
GTTGTAGTATAACACTATGA+CGG | + | chr2_3:49396429-49396448 | Msa0296290:intron | 30.0% | |
TCTTCAACTGTATCATAGTA+TGG | - | chr2_3:49396532-49396551 | None:intergenic | 30.0% | |
!! | TTCACAAAGACATTTTTAGG+TGG | - | chr2_3:49396656-49396675 | None:intergenic | 30.0% |
!!! | TTTTTTTTTTGTGGTGATCG+GGG | - | chr2_3:49396736-49396755 | None:intergenic | 30.0% |
!!! | GTTTTTTTTTTGTGGTGATC+GGG | - | chr2_3:49396737-49396756 | None:intergenic | 30.0% |
!!! | TTTTTTTTTTTTGGTGACCG+GGG | - | chr2_3:49396842-49396861 | None:intergenic | 30.0% |
!!! | GATGGATTAAATTGGGTTTT+TGG | - | chr2_3:49396929-49396948 | None:intergenic | 30.0% |
!!! | GATGGATTAAATTGGGTTTT+TGG | - | chr2_3:49396929-49396948 | None:intergenic | 30.0% |
TTGTTTAACATATTCCGGAA+CGG | + | chr2_3:49397075-49397094 | Msa0296290:intron | 30.0% | |
TGACCTGTTATCGTAAATTA+TGG | + | chr2_3:49397136-49397155 | Msa0296290:intron | 30.0% | |
AATTTGATACTCTTTCAGCT+GGG | - | chr2_3:49397298-49397317 | None:intergenic | 30.0% | |
TAATTTGATACTCTTTCAGC+TGG | - | chr2_3:49397299-49397318 | None:intergenic | 30.0% | |
!! | TTTTGTTACCCTTTGTTATG+TGG | - | chr2_3:49397325-49397344 | None:intergenic | 30.0% |
TCTGGGTATTTATCTGTAAT+GGG | - | chr2_3:49397371-49397390 | None:intergenic | 30.0% | |
!!! | TTGCTTTTTCCTATCATTTG+TGG | - | chr2_3:49397414-49397433 | None:intergenic | 30.0% |
TTAAACTTCAATCATACTGG+TGG | - | chr2_3:49397459-49397478 | None:intergenic | 30.0% | |
ATATGAGATTAAAAGCTGAG+CGG | + | chr2_3:49397569-49397588 | Msa0296290:intron | 30.0% | |
CTGATCACATAACTGAAATT+TGG | - | chr2_3:49397885-49397904 | None:intergenic | 30.0% | |
!! | TATTTGTTGATGACAACAAG+TGG | + | chr2_3:49397917-49397936 | Msa0296290:intron | 30.0% |
TGCTACTAATAAAATGGCTA+CGG | - | chr2_3:49398142-49398161 | None:intergenic | 30.0% | |
!! | TAGCCATTTTATTAGTAGCA+AGG | + | chr2_3:49398142-49398161 | Msa0296290:intron | 30.0% |
TGACCTTGCTACTAATAAAA+TGG | - | chr2_3:49398148-49398167 | None:intergenic | 30.0% | |
TATTAGTAGCAAGGTCAAAA+AGG | + | chr2_3:49398151-49398170 | Msa0296290:intron | 30.0% | |
!!! | GTACACAAACTTTATTTTGG+TGG | - | chr2_3:49398221-49398240 | None:intergenic | 30.0% |
! | ATTTGGCATTACTTGCTAAA+TGG | - | chr2_3:49398443-49398462 | None:intergenic | 30.0% |
!!! | GTTCTCTTTTTTGGAACAAA+TGG | + | chr2_3:49398497-49398516 | Msa0296290:intron | 30.0% |
GGAAAATTTCTTGGATTAAC+TGG | - | chr2_3:49398527-49398546 | None:intergenic | 30.0% | |
!! | CAGACTTCAAAAGTACTAAT+CGG | + | chr2_3:49398661-49398680 | Msa0296290:intron | 30.0% |
AGTAAAAATCTATCATTGGG+TGG | - | chr2_3:49398687-49398706 | None:intergenic | 30.0% | |
! | AAACTTCCTTTTCTCTATCT+GGG | - | chr2_3:49398795-49398814 | None:intergenic | 30.0% |
! | CACCAAATAACATACTTTTG+TGG | + | chr2_3:49398874-49398893 | Msa0296290:intron | 30.0% |
!!! | CCACTATTTTTTACACAATC+TGG | - | chr2_3:49398993-49399012 | None:intergenic | 30.0% |
CCAGATTGTGTAAAAAATAG+TGG | + | chr2_3:49398990-49399009 | Msa0296290:intron | 30.0% | |
TCTACAATTTATCGTCACAA+TGG | + | chr2_3:49399613-49399632 | Msa0296290:intron | 30.0% | |
!!! | AAGTTTTGTTTTGCTCACTA+AGG | + | chr2_3:49399707-49399726 | Msa0296290:intron | 30.0% |
!!! | TTTGGTTTTGTTATAGTGAG+TGG | + | chr2_3:49399820-49399839 | Msa0296290:intron | 30.0% |
!!! | TTGGTTTTGTTATAGTGAGT+GGG | + | chr2_3:49399821-49399840 | Msa0296290:intron | 30.0% |
TATTGGAAGGTGATTAAAAG+TGG | + | chr2_3:49400302-49400321 | Msa0296290:intron | 30.0% | |
TCTTCTTAACTAGTGTATTC+GGG | - | chr2_3:49400400-49400419 | None:intergenic | 30.0% | |
GTCTTCTTAACTAGTGTATT+CGG | - | chr2_3:49400401-49400420 | None:intergenic | 30.0% | |
TATGAACATGAACTTTATCC+TGG | + | chr2_3:49400881-49400900 | Msa0296290:intron | 30.0% | |
! | AGCCTTATGGTGTTTATTAT+TGG | + | chr2_3:49400945-49400964 | Msa0296290:CDS | 30.0% |
!! | TAGTATATCCCTCTTTTTCA+AGG | - | chr2_3:49400988-49401007 | None:intergenic | 30.0% |
TGTAAAGAATAAACCCAAGA+AGG | + | chr2_3:49401021-49401040 | Msa0296290:CDS | 30.0% | |
GGATTTGCAATTTCAAAACT+TGG | + | chr2_3:49401085-49401104 | Msa0296290:CDS | 30.0% | |
! | TCATAGGTTGAACTTTCAAA+AGG | + | chr2_3:49401204-49401223 | Msa0296290:CDS | 30.0% |
ATGCTTCATCAGATTATGAA+AGG | + | chr2_3:49401352-49401371 | Msa0296290:CDS | 30.0% | |
! | TTGTCATTTCCTTGGAAATA+AGG | + | chr2_3:49401396-49401415 | Msa0296290:CDS | 30.0% |
AAATGAAAACGAGAAGGTGA+TGG | - | chr2_3:49395563-49395582 | None:intergenic | 35.0% | |
GAACTGAAATGAAAACGAGA+AGG | - | chr2_3:49395569-49395588 | None:intergenic | 35.0% | |
! | AGTGTTGAGATGGAAATGAA+AGG | - | chr2_3:49395619-49395638 | None:intergenic | 35.0% |
TTACTTACACATGTAGAGTG+TGG | + | chr2_3:49395736-49395755 | Msa0296290:intron | 35.0% | |
TACTTACACATGTAGAGTGT+GGG | + | chr2_3:49395737-49395756 | Msa0296290:intron | 35.0% | |
ACTGCCTGAAGAAGAATATT+GGG | + | chr2_3:49395984-49396003 | Msa0296290:CDS | 35.0% | |
AAGAATATTGGGAAGCTGTT+TGG | + | chr2_3:49395995-49396014 | Msa0296290:CDS | 35.0% | |
GCTAACAAGAGATTGAATGT+TGG | - | chr2_3:49396381-49396400 | None:intergenic | 35.0% | |
GTGTTATACTACAACGGTAA+AGG | - | chr2_3:49396424-49396443 | None:intergenic | 35.0% | |
GAGCCTCTTACTAAATTCAA+TGG | + | chr2_3:49396489-49396508 | Msa0296290:intron | 35.0% | |
GGCAATGCATAAAATACGTA+AGG | + | chr2_3:49396697-49396716 | Msa0296290:intron | 35.0% | |
AAAAACCCAATTTAATCCCC+CGG | + | chr2_3:49396822-49396841 | Msa0296290:intron | 35.0% | |
!!! | TTTTTTTTTTTGGTGACCGG+GGG | - | chr2_3:49396841-49396860 | None:intergenic | 35.0% |
GTTAGAAGTAAAAACCGTTC+CGG | - | chr2_3:49397092-49397111 | None:intergenic | 35.0% | |
ACGATAACAGGTCAATGATA+AGG | - | chr2_3:49397130-49397149 | None:intergenic | 35.0% | |
ATTTGATACTCTTTCAGCTG+GGG | - | chr2_3:49397297-49397316 | None:intergenic | 35.0% | |
TGGGTATTTATCTGTAATGG+GGG | - | chr2_3:49397369-49397388 | None:intergenic | 35.0% | |
CTGGGTATTTATCTGTAATG+GGG | - | chr2_3:49397370-49397389 | None:intergenic | 35.0% | |
GTCTGGGTATTTATCTGTAA+TGG | - | chr2_3:49397372-49397391 | None:intergenic | 35.0% | |
TACAGATAAATACCCAGACA+AGG | + | chr2_3:49397373-49397392 | Msa0296290:intron | 35.0% | |
TAAATACCCAGACAAGGTAA+AGG | + | chr2_3:49397379-49397398 | Msa0296290:intron | 35.0% | |
AAATACCCAGACAAGGTAAA+GGG | + | chr2_3:49397380-49397399 | Msa0296290:intron | 35.0% | |
! | CTTTTTCCTATCATTTGTGG+TGG | - | chr2_3:49397411-49397430 | None:intergenic | 35.0% |
TGATAGGAAAAAGCAAAGCT+AGG | + | chr2_3:49397418-49397437 | Msa0296290:intron | 35.0% | |
TTTGGATAGAAAGAAACGCT+CGG | - | chr2_3:49397528-49397547 | None:intergenic | 35.0% | |
TTTCTTGTGTGTGGGTAATT+TGG | - | chr2_3:49397546-49397565 | None:intergenic | 35.0% | |
! | GCTCAGCTTTTAATCTCATA+TGG | - | chr2_3:49397570-49397589 | None:intergenic | 35.0% |
TTGTATCAATTTGGCACCTT+AGG | - | chr2_3:49397613-49397632 | None:intergenic | 35.0% | |
AAATGATCTGACACATGTTC+AGG | + | chr2_3:49397631-49397650 | Msa0296290:intron | 35.0% | |
TAAAAGTCAGTCTCTTTGCT+TGG | - | chr2_3:49397846-49397865 | None:intergenic | 35.0% | |
!! | GCAAAGAGACTGACTTTTAA+AGG | + | chr2_3:49397847-49397866 | Msa0296290:intron | 35.0% |
TACTAATAAAATGGCTACGG+TGG | - | chr2_3:49398139-49398158 | None:intergenic | 35.0% | |
AAAACCATACCATCAATCCA+AGG | + | chr2_3:49398192-49398211 | Msa0296290:intron | 35.0% | |
GGTGGTTTGATACTAATGTT+GGG | - | chr2_3:49398260-49398279 | None:intergenic | 35.0% | |
!! | AGAGTTTTAGCATCTCGATA+CGG | - | chr2_3:49398381-49398400 | None:intergenic | 35.0% |
! | CATTACTTGCTAAATGGTGT+TGG | - | chr2_3:49398437-49398456 | None:intergenic | 35.0% |
GAGGATAAGGGAGTTTAATT+TGG | - | chr2_3:49398460-49398479 | None:intergenic | 35.0% | |
AAAAAAGAGAACGGAGGTTT+GGG | - | chr2_3:49398489-49398508 | None:intergenic | 35.0% | |
AGGAGGTTAGGAAAATTTCT+TGG | - | chr2_3:49398536-49398555 | None:intergenic | 35.0% | |
AATAGAGGAAATGATACCTG+CGG | + | chr2_3:49398593-49398612 | Msa0296290:intron | 35.0% | |
AAGAAGGAAAGAAAGTAGAC+CGG | + | chr2_3:49398624-49398643 | Msa0296290:intron | 35.0% | |
! | CAAACTTCCTTTTCTCTATC+TGG | - | chr2_3:49398796-49398815 | None:intergenic | 35.0% |
GTAATGTGTTTAGTTGTCAG+AGG | - | chr2_3:49398968-49398987 | None:intergenic | 35.0% | |
CTTAACAAAAAAGACAGACG+TGG | + | chr2_3:49399027-49399046 | Msa0296290:intron | 35.0% | |
AGAGTGAATGTCAATTAGTG+AGG | + | chr2_3:49399368-49399387 | Msa0296290:intron | 35.0% | |
!!! | TACACCTTAGTGTTTTTAGG+TGG | + | chr2_3:49399500-49399519 | Msa0296290:intron | 35.0% |
TACACCACCTAAAAACACTA+AGG | - | chr2_3:49399507-49399526 | None:intergenic | 35.0% | |
!!! | TGGTTTTGTTATAGTGAGTG+GGG | + | chr2_3:49399822-49399841 | Msa0296290:intron | 35.0% |
TTTCAATGGAGGTCCTTAAT+AGG | - | chr2_3:49400066-49400085 | None:intergenic | 35.0% | |
GAAATATTAACTAGTGCTCC+AGG | + | chr2_3:49400246-49400265 | Msa0296290:intron | 35.0% | |
CTTCTTAACTAGTGTATTCG+GGG | - | chr2_3:49400399-49400418 | None:intergenic | 35.0% | |
! | CTCACTAACTTGTGTCTTAA+AGG | - | chr2_3:49400654-49400673 | None:intergenic | 35.0% |
ACACAAGTTAGTGAGTCAAA+AGG | + | chr2_3:49400659-49400678 | Msa0296290:intron | 35.0% | |
TCAACACCTGTGTCATAAAT+AGG | - | chr2_3:49400806-49400825 | None:intergenic | 35.0% | |
ATAGAGTCAGTGCAAAATCT+TGG | + | chr2_3:49401163-49401182 | Msa0296290:CDS | 35.0% | |
! | TCATGGAACAACAGCTTTTA+TGG | + | chr2_3:49401249-49401268 | Msa0296290:CDS | 35.0% |
! | AACAGCTTTTATGGTTCCAT+TGG | + | chr2_3:49401258-49401277 | Msa0296290:CDS | 35.0% |
TTCCAAGGAAATGACAAACA+GGG | - | chr2_3:49401393-49401412 | None:intergenic | 35.0% | |
TTTCCAAGGAAATGACAAAC+AGG | - | chr2_3:49401394-49401413 | None:intergenic | 35.0% | |
ATGGGTACCTAATTTAGGTA+TGG | + | chr2_3:49401426-49401445 | Msa0296290:CDS | 35.0% | |
GCATTGTCCATACCTAAATT+AGG | - | chr2_3:49401436-49401455 | None:intergenic | 35.0% | |
TTAGGTATGGACAATGCTTA+TGG | + | chr2_3:49401439-49401458 | Msa0296290:CDS | 35.0% | |
ACTTACACATGTAGAGTGTG+GGG | + | chr2_3:49395738-49395757 | Msa0296290:intron | 40.0% | |
CACTGCCTGAAGAAGAATAT+TGG | + | chr2_3:49395983-49396002 | Msa0296290:CDS | 40.0% | |
GCTTCCCAATATTCTTCTTC+AGG | - | chr2_3:49395991-49396010 | None:intergenic | 40.0% | |
AAATAACAACCTTGAGGTCC+AGG | - | chr2_3:49396063-49396082 | None:intergenic | 40.0% | |
TGTGAACTTAGCTGATCAGT+TGG | + | chr2_3:49396670-49396689 | Msa0296290:intron | 40.0% | |
!! | CTTAGCTGATCAGTTGGTAA+AGG | + | chr2_3:49396676-49396695 | Msa0296290:intron | 40.0% |
! | GGGGGATTAAATTGGGTTTT+TGG | - | chr2_3:49396823-49396842 | None:intergenic | 40.0% |
! | GGGTATTTATCTGTAATGGG+GGG | - | chr2_3:49397368-49397387 | None:intergenic | 40.0% |
TTGAACCCTTTACCTTGTCT+GGG | - | chr2_3:49397388-49397407 | None:intergenic | 40.0% | |
GTTCAACCACCACAAATGAT+AGG | + | chr2_3:49397402-49397421 | Msa0296290:intron | 40.0% | |
AGGAAAAAGCAAAGCTAGGA+CGG | + | chr2_3:49397422-49397441 | Msa0296290:intron | 40.0% | |
TCGGGTCTTTCATCAAAAAG+AGG | - | chr2_3:49397509-49397528 | None:intergenic | 40.0% | |
TTGGATAGAAAGAAACGCTC+GGG | - | chr2_3:49397527-49397546 | None:intergenic | 40.0% | |
CATATGGCTTTCTTGTGTGT+GGG | - | chr2_3:49397554-49397573 | None:intergenic | 40.0% | |
TCATATGGCTTTCTTGTGTG+TGG | - | chr2_3:49397555-49397574 | None:intergenic | 40.0% | |
TATCAATTTGGCACCTTAGG+CGG | - | chr2_3:49397610-49397629 | None:intergenic | 40.0% | |
CATGTTCAGGAAACACTATG+TGG | + | chr2_3:49397644-49397663 | Msa0296290:intron | 40.0% | |
CCAAATGCTCAACTTTGTGT+GGG | - | chr2_3:49397763-49397782 | None:intergenic | 40.0% | |
ACCAAATGCTCAACTTTGTG+TGG | - | chr2_3:49397764-49397783 | None:intergenic | 40.0% | |
TGAAATGTATTCGCTTGGGT+GGG | - | chr2_3:49398115-49398134 | None:intergenic | 40.0% | |
TGGCTGAAATGTATTCGCTT+GGG | - | chr2_3:49398119-49398138 | None:intergenic | 40.0% | |
TAGTAGCAAGGTCAAAAAGG+CGG | + | chr2_3:49398154-49398173 | Msa0296290:intron | 40.0% | |
!!! | CTTTATTTTGGTGGGATCCT+TGG | - | chr2_3:49398212-49398231 | None:intergenic | 40.0% |
GTTTGATACTAATGTTGGGC+GGG | - | chr2_3:49398256-49398275 | None:intergenic | 40.0% | |
GGTTTGATACTAATGTTGGG+CGG | - | chr2_3:49398257-49398276 | None:intergenic | 40.0% | |
CGGTGGTTTGATACTAATGT+TGG | - | chr2_3:49398261-49398280 | None:intergenic | 40.0% | |
! | ATTAAAAATGGGGCTGGTGT+GGG | - | chr2_3:49398291-49398310 | None:intergenic | 40.0% |
! | TATTAAAAATGGGGCTGGTG+TGG | - | chr2_3:49398292-49398311 | None:intergenic | 40.0% |
!! | AGTTTTAGCATCTCGATACG+GGG | - | chr2_3:49398379-49398398 | None:intergenic | 40.0% |
!! | GAGTTTTAGCATCTCGATAC+GGG | - | chr2_3:49398380-49398399 | None:intergenic | 40.0% |
GGGTTGAAAATAGGAGTTTG+TGG | - | chr2_3:49398407-49398426 | None:intergenic | 40.0% | |
! | TACTTGCTAAATGGTGTTGG+CGG | - | chr2_3:49398434-49398453 | None:intergenic | 40.0% |
AAAAAGAGAACGGAGGTTTG+GGG | - | chr2_3:49398488-49398507 | None:intergenic | 40.0% | |
CAAAAAAGAGAACGGAGGTT+TGG | - | chr2_3:49398490-49398509 | None:intergenic | 40.0% | |
!!! | CAAACCTCCGTTCTCTTTTT+TGG | + | chr2_3:49398488-49398507 | Msa0296290:intron | 40.0% |
TGTTCCAAAAAAGAGAACGG+AGG | - | chr2_3:49398495-49398514 | None:intergenic | 40.0% | |
ATAGAGGAAATGATACCTGC+GGG | + | chr2_3:49398594-49398613 | Msa0296290:intron | 40.0% | |
TGAAGTCAAGATTATCGGGT+TGG | - | chr2_3:49398713-49398732 | None:intergenic | 40.0% | |
!!! | GGTTTTGTTATAGTGAGTGG+GGG | + | chr2_3:49399823-49399842 | Msa0296290:intron | 40.0% |
TTCAACAATAACAAGCCCCA+CGG | + | chr2_3:49400141-49400160 | Msa0296290:intron | 40.0% | |
! | TGAAATTGATGACCTCCCAA+CGG | + | chr2_3:49400823-49400842 | Msa0296290:intron | 40.0% |
GTGTGTCATCAATTTCCGTT+GGG | - | chr2_3:49400841-49400860 | None:intergenic | 40.0% | |
TGTGTGTCATCAATTTCCGT+TGG | - | chr2_3:49400842-49400861 | None:intergenic | 40.0% | |
!! | TGCATGTTCATTGTTTTGCC+AGG | - | chr2_3:49400902-49400921 | None:intergenic | 40.0% |
AGAAAGCAGTGATGTGTCAT+AGG | + | chr2_3:49401188-49401207 | Msa0296290:CDS | 40.0% | |
! | AGCTTTTATGGTTCCATTGG+TGG | + | chr2_3:49401261-49401280 | Msa0296290:CDS | 40.0% |
GTTCTATCATTTGCCACCAA+TGG | - | chr2_3:49401277-49401296 | None:intergenic | 40.0% | |
CAGATTATGAAAGGTGATCC+TGG | + | chr2_3:49401361-49401380 | Msa0296290:CDS | 40.0% | |
! | AACCCTGTTTGTCATTTCCT+TGG | + | chr2_3:49401388-49401407 | Msa0296290:CDS | 40.0% |
CTTACACATGTAGAGTGTGG+GGG | + | chr2_3:49395739-49395758 | Msa0296290:intron | 45.0% | |
AGAAGTTCTCGCAGAGAAGT+GGG | - | chr2_3:49396036-49396055 | None:intergenic | 45.0% | |
TAGAAGTTCTCGCAGAGAAG+TGG | - | chr2_3:49396037-49396056 | None:intergenic | 45.0% | |
CACGCGATGTAATACTCTGT+CGG | - | chr2_3:49396357-49396376 | None:intergenic | 45.0% | |
GTTGAACCCTTTACCTTGTC+TGG | - | chr2_3:49397389-49397408 | None:intergenic | 45.0% | |
!! | AAAAGCTGAGCGGTTGCTTT+TGG | + | chr2_3:49397579-49397598 | Msa0296290:intron | 45.0% |
ATCAATTTGGCACCTTAGGC+GGG | - | chr2_3:49397609-49397628 | None:intergenic | 45.0% | |
AATGCTCAACTTTGTGTGGG+TGG | - | chr2_3:49397760-49397779 | None:intergenic | 45.0% | |
CCCACACAAAGTTGAGCATT+TGG | + | chr2_3:49397760-49397779 | Msa0296290:intron | 45.0% | |
! | CTCATTCTGACAGGTGGATT+TGG | - | chr2_3:49397987-49398006 | None:intergenic | 45.0% |
AATCCACCTGTCAGAATGAG+TGG | + | chr2_3:49397987-49398006 | Msa0296290:intron | 45.0% | |
ATCCACCTGTCAGAATGAGT+GGG | + | chr2_3:49397988-49398007 | Msa0296290:intron | 45.0% | |
AAATGTATTCGCTTGGGTGG+GGG | - | chr2_3:49398113-49398132 | None:intergenic | 45.0% | |
GAAATGTATTCGCTTGGGTG+GGG | - | chr2_3:49398114-49398133 | None:intergenic | 45.0% | |
CTGAAATGTATTCGCTTGGG+TGG | - | chr2_3:49398116-49398135 | None:intergenic | 45.0% | |
GTGGCTGAAATGTATTCGCT+TGG | - | chr2_3:49398120-49398139 | None:intergenic | 45.0% | |
! | GGATCCTTGGATTGATGGTA+TGG | - | chr2_3:49398199-49398218 | None:intergenic | 45.0% |
!! | TAAATGGTGTTGGCGGATGA+GGG | - | chr2_3:49398427-49398446 | None:intergenic | 45.0% |
AAAAGAGAACGGAGGTTTGG+GGG | - | chr2_3:49398487-49398506 | None:intergenic | 45.0% | |
!!! | TTTTTTTTGGGGGGGATGTG+AGG | - | chr2_3:49398556-49398575 | None:intergenic | 45.0% |
AAGAAAGTAGACCGGAAGAG+AGG | + | chr2_3:49398632-49398651 | Msa0296290:intron | 45.0% | |
CGCGTGAAGTCAAGATTATC+GGG | - | chr2_3:49398717-49398736 | None:intergenic | 45.0% | |
CCGCGTGAAGTCAAGATTAT+CGG | - | chr2_3:49398718-49398737 | None:intergenic | 45.0% | |
CCGATAATCTTGACTTCACG+CGG | + | chr2_3:49398715-49398734 | Msa0296290:intron | 45.0% | |
! | CTCTATCTGGGATTGCCTAT+CGG | - | chr2_3:49398783-49398802 | None:intergenic | 45.0% |
GGCAATCCCAGATAGAGAAA+AGG | + | chr2_3:49398786-49398805 | Msa0296290:intron | 45.0% | |
TCATGATTCTTGGTTGGCAG+AGG | - | chr2_3:49398847-49398866 | None:intergenic | 45.0% | |
!!! | CTTCTTTTTGAGGCGACTTC+AGG | - | chr2_3:49398915-49398934 | None:intergenic | 45.0% |
CTGAAGTCGCCTCAAAAAGA+AGG | + | chr2_3:49398913-49398932 | Msa0296290:intron | 45.0% | |
! | GGCTTTGCTCCTTCTTTTTG+AGG | - | chr2_3:49398925-49398944 | None:intergenic | 45.0% |
!!! | GAAAGAGAGAGCGTTTTCGT+GGG | + | chr2_3:49399729-49399748 | Msa0296290:intron | 45.0% |
! | TTTGTTATAGTGAGTGGGGG+TGG | + | chr2_3:49399826-49399845 | Msa0296290:intron | 45.0% |
TTGTTATAGTGAGTGGGGGT+GGG | + | chr2_3:49399827-49399846 | Msa0296290:intron | 45.0% | |
AGTCTCCTTAACTAGTGTCC+TGG | - | chr2_3:49400267-49400286 | None:intergenic | 45.0% | |
TGTCATCAATTTCCGTTGGG+AGG | - | chr2_3:49400838-49400857 | None:intergenic | 45.0% | |
ACACCATAAGGCTGTGCTAA+GGG | - | chr2_3:49400938-49400957 | None:intergenic | 45.0% | |
AACACCATAAGGCTGTGCTA+AGG | - | chr2_3:49400939-49400958 | None:intergenic | 45.0% | |
ACTTGCCATGCTGATACTTC+AGG | + | chr2_3:49401316-49401335 | Msa0296290:CDS | 45.0% | |
! | TCATGCCTGAAGTATCAGCA+TGG | - | chr2_3:49401324-49401343 | None:intergenic | 45.0% |
TGACAAACAGGGTTACTACC+AGG | - | chr2_3:49401382-49401401 | None:intergenic | 45.0% | |
!! | ATTTGATTAATATTAAAAAT+GGG | - | chr2_3:49398302-49398321 | None:intergenic | 5.0% |
!! | AATTTGATTAATATTAAAAA+TGG | - | chr2_3:49398303-49398322 | None:intergenic | 5.0% |
!!! | TATTTTTAATTGTTTTTTTT+GGG | - | chr2_3:49398568-49398587 | None:intergenic | 5.0% |
!! | TTATTTAAAAATGATTAAAT+TGG | + | chr2_3:49399237-49399256 | Msa0296290:intron | 5.0% |
!! | TATTTAAAAATGATTAAATT+GGG | + | chr2_3:49399238-49399257 | Msa0296290:intron | 5.0% |
!! | TAAATAAATAACTAAATAAA+GGG | - | chr2_3:49400423-49400442 | None:intergenic | 5.0% |
CTTCTTCAGGCAGTGATGCA+TGG | - | chr2_3:49395978-49395997 | None:intergenic | 50.0% | |
!! | GAAGTGGGAATAGGAGCGTT+CGG | - | chr2_3:49396021-49396040 | None:intergenic | 50.0% |
TCTCGCAGAGAAGTGGGAAT+AGG | - | chr2_3:49396030-49396049 | None:intergenic | 50.0% | |
!! | CTGCGAGAACTTCTAAAGCC+TGG | + | chr2_3:49396042-49396061 | Msa0296290:CDS | 50.0% |
!! | CTTCTAAAGCCTGGACCTCA+AGG | + | chr2_3:49396051-49396070 | Msa0296290:CDS | 50.0% |
GGTGACCGGGGGATTAAATT+GGG | - | chr2_3:49396830-49396849 | None:intergenic | 50.0% | |
TGGTGACCGGGGGATTAAAT+TGG | - | chr2_3:49396831-49396850 | None:intergenic | 50.0% | |
!! | GCTTTTGGAAAACCCGCCTA+AGG | + | chr2_3:49397594-49397613 | Msa0296290:intron | 50.0% |
CAACTTTGTGTGGGTGGATG+TGG | - | chr2_3:49397754-49397773 | None:intergenic | 50.0% | |
CTTGGCGTCTGATGCGTAAT+AGG | - | chr2_3:49397828-49397847 | None:intergenic | 50.0% | |
! | TCACTTGTTAGCTTGGGAGG+AGG | - | chr2_3:49398061-49398080 | None:intergenic | 50.0% |
AATGTATTCGCTTGGGTGGG+GGG | - | chr2_3:49398112-49398131 | None:intergenic | 50.0% | |
TGGTGGGATCCTTGGATTGA+TGG | - | chr2_3:49398204-49398223 | None:intergenic | 50.0% | |
ACTAATGTTGGGCGGGAAGT+AGG | - | chr2_3:49398249-49398268 | None:intergenic | 50.0% | |
GGCGGTTTAACTCTGTTTGG+TGG | - | chr2_3:49398329-49398348 | None:intergenic | 50.0% | |
AGGGGCGGTTTAACTCTGTT+TGG | - | chr2_3:49398332-49398351 | None:intergenic | 50.0% | |
TTTAGCATCTCGATACGGGG+AGG | - | chr2_3:49398376-49398395 | None:intergenic | 50.0% | |
GGCGGATGAGGGTTGAAAAT+AGG | - | chr2_3:49398416-49398435 | None:intergenic | 50.0% | |
!! | CTAAATGGTGTTGGCGGATG+AGG | - | chr2_3:49398428-49398447 | None:intergenic | 50.0% |
! | TTTGGGGGTACGGAGGATAA+GGG | - | chr2_3:49398472-49398491 | None:intergenic | 50.0% |
GTCTGTCTTGTCCTCTCTTC+CGG | - | chr2_3:49398646-49398665 | None:intergenic | 50.0% | |
GACTTCACGCGGTCAATCAA+AGG | + | chr2_3:49398726-49398745 | Msa0296290:intron | 50.0% | |
TTACGAGGATCACCACCGAT+AGG | + | chr2_3:49398765-49398784 | Msa0296290:intron | 50.0% | |
! | TATCTGGGATTGCCTATCGG+TGG | - | chr2_3:49398780-49398799 | None:intergenic | 50.0% |
!!! | GGAAAGAGAGAGCGTTTTCG+TGG | + | chr2_3:49399728-49399747 | Msa0296290:intron | 50.0% |
! | CGTGTGTCTGCGATGTGTTT+TGG | + | chr2_3:49399802-49399821 | Msa0296290:intron | 50.0% |
TGTTATAGTGAGTGGGGGTG+GGG | + | chr2_3:49399828-49399847 | Msa0296290:intron | 50.0% | |
GTGCTCCAGGACACTAGTTA+AGG | + | chr2_3:49400259-49400278 | Msa0296290:intron | 50.0% | |
CACATGTAGAGTGTGGGGGT+TGG | + | chr2_3:49395743-49395762 | Msa0296290:intron | 55.0% | |
GATGTGCAGCTTGCACTTGC+AGG | + | chr2_3:49395946-49395965 | Msa0296290:intron | 55.0% | |
GGTGATCGGGGTTTGAACTC+TGG | - | chr2_3:49396724-49396743 | None:intergenic | 55.0% | |
TGTGGGTGGATGTGGCATGA+TGG | - | chr2_3:49397746-49397765 | None:intergenic | 55.0% | |
AGCCCACTCATTCTGACAGG+TGG | - | chr2_3:49397993-49398012 | None:intergenic | 55.0% | |
TGCAGCCCACTCATTCTGAC+AGG | - | chr2_3:49397996-49398015 | None:intergenic | 55.0% | |
! | TTGGGAGGAGGAGAAAGTGC+GGG | - | chr2_3:49398049-49398068 | None:intergenic | 55.0% |
CTTGGGAGGAGGAGAAAGTG+CGG | - | chr2_3:49398050-49398069 | None:intergenic | 55.0% | |
! | GCGTCACTTGTTAGCTTGGG+AGG | - | chr2_3:49398064-49398083 | None:intergenic | 55.0% |
! | GCGGCGTCACTTGTTAGCTT+GGG | - | chr2_3:49398067-49398086 | None:intergenic | 55.0% |
AGGGTGAAGCTTGGAAGTGG+CGG | - | chr2_3:49398086-49398105 | None:intergenic | 55.0% | |
AGGAGGGTGAAGCTTGGAAG+TGG | - | chr2_3:49398089-49398108 | None:intergenic | 55.0% | |
! | AAAAATGGGGCTGGTGTGGG+AGG | - | chr2_3:49398288-49398307 | None:intergenic | 55.0% |
AGAGTTAAACCGCCCCTCCT+CGG | + | chr2_3:49398335-49398354 | Msa0296290:intron | 55.0% | |
GAGGAATAATCGCCGAGGAG+GGG | - | chr2_3:49398350-49398369 | None:intergenic | 55.0% | |
GGAGGAATAATCGCCGAGGA+GGG | - | chr2_3:49398351-49398370 | None:intergenic | 55.0% | |
AGGAGGAATAATCGCCGAGG+AGG | - | chr2_3:49398352-49398371 | None:intergenic | 55.0% | |
GGTAGGAGGAATAATCGCCG+AGG | - | chr2_3:49398355-49398374 | None:intergenic | 55.0% | |
! | GTTTGGGGGTACGGAGGATA+AGG | - | chr2_3:49398473-49398492 | None:intergenic | 55.0% |
AGAACGGAGGTTTGGGGGTA+CGG | - | chr2_3:49398482-49398501 | None:intergenic | 55.0% | |
!! | TTTTTGGGGGGGATGTGAGG+AGG | - | chr2_3:49398553-49398572 | None:intergenic | 55.0% |
!! | ACCTGCGGGAGCTTTGAAGA+AGG | + | chr2_3:49398608-49398627 | Msa0296290:intron | 55.0% |
TCCTTCTTCAAAGCTCCCGC+AGG | - | chr2_3:49398612-49398631 | None:intergenic | 55.0% | |
!!! | AGAGAGAGCGTTTTCGTGGG+TGG | + | chr2_3:49399732-49399751 | Msa0296290:intron | 55.0% |
!!! | GAGAGAGCGTTTTCGTGGGT+GGG | + | chr2_3:49399733-49399752 | Msa0296290:intron | 55.0% |
TGGGTGTGTGGAGTGAGGTT+AGG | + | chr2_3:49399752-49399771 | Msa0296290:intron | 55.0% | |
GTTATAGTGAGTGGGGGTGG+GGG | + | chr2_3:49399829-49399848 | Msa0296290:intron | 55.0% | |
CGTCCCTTAGCACAGCCTTA+TGG | + | chr2_3:49400932-49400951 | Msa0296290:intron | 55.0% | |
! | GGCGGCGTCACTTGTTAGCT+TGG | - | chr2_3:49398068-49398087 | None:intergenic | 60.0% |
GTTGGGCGGGAAGTAGGAGA+TGG | - | chr2_3:49398243-49398262 | None:intergenic | 60.0% | |
GAATAATCGCCGAGGAGGGG+CGG | - | chr2_3:49398347-49398366 | None:intergenic | 60.0% | |
TCTCGATACGGGGAGGTAGG+AGG | - | chr2_3:49398369-49398388 | None:intergenic | 60.0% | |
GCATCTCGATACGGGGAGGT+AGG | - | chr2_3:49398372-49398391 | None:intergenic | 60.0% | |
! | CGTTTTCGTGGGTGGGTGTG+TGG | + | chr2_3:49399740-49399759 | Msa0296290:intron | 60.0% |
GTATTCGCTTGGGTGGGGGG+AGG | - | chr2_3:49398109-49398128 | None:intergenic | 65.0% | |
! | AATGGGGCTGGTGTGGGAGG+TGG | - | chr2_3:49398285-49398304 | None:intergenic | 65.0% |
! | ACGGAGGTTTGGGGGTACGG+AGG | - | chr2_3:49398479-49398498 | None:intergenic | 65.0% |
GGGGGGGATGTGAGGAGGTT+AGG | - | chr2_3:49398548-49398567 | None:intergenic | 65.0% | |
GTGGGTGGGTGTGTGGAGTG+AGG | + | chr2_3:49399747-49399766 | Msa0296290:intron | 65.0% | |
ATAGTGAGTGGGGGTGGGGG+TGG | + | chr2_3:49399832-49399851 | Msa0296290:intron | 65.0% | |
TAGTGAGTGGGGGTGGGGGT+GGG | + | chr2_3:49399833-49399852 | Msa0296290:intron | 65.0% | |
GGGGGGAGGAGGGTGAAGCT+TGG | - | chr2_3:49398095-49398114 | None:intergenic | 70.0% | |
TCGCTTGGGTGGGGGGAGGA+GGG | - | chr2_3:49398105-49398124 | None:intergenic | 70.0% | |
TTCGCTTGGGTGGGGGGAGG+AGG | - | chr2_3:49398106-49398125 | None:intergenic | 70.0% | |
CTGGTGTGGGAGGTGGTCGG+TGG | - | chr2_3:49398278-49398297 | None:intergenic | 70.0% | |
! | GGGCTGGTGTGGGAGGTGGT+CGG | - | chr2_3:49398281-49398300 | None:intergenic | 70.0% |
TGAGTGGGGGTGGGGGTGGG+TGG | + | chr2_3:49399836-49399855 | Msa0296290:intron | 75.0% | |
GAGTGGGGGTGGGGGTGGGT+GGG | + | chr2_3:49399837-49399856 | Msa0296290:intron | 75.0% | |
AGTGGGGGTGGGGGTGGGTG+GGG | + | chr2_3:49399838-49399857 | Msa0296290:intron | 75.0% | |
! | GGGTGGGGGTGGGTGGGGCG+TGG | + | chr2_3:49399843-49399862 | Msa0296290:intron | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 49395552 | 49401480 | 49395552 | ID=Msa0296290;Name=Msa0296290 |
chr2_3 | mRNA | 49395552 | 49401480 | 49395552 | ID=Msa0296290-mRNA-1;Parent=Msa0296290;Name=Msa0296290-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.5|0.33|1|0.5|0.66|3|0|232 |
chr2_3 | exon | 49395552 | 49395593 | 49395552 | ID=Msa0296290-mRNA-1:exon:15556;Parent=Msa0296290-mRNA-1 |
chr2_3 | exon | 49395955 | 49396072 | 49395955 | ID=Msa0296290-mRNA-1:exon:15557;Parent=Msa0296290-mRNA-1 |
chr2_3 | exon | 49400942 | 49401480 | 49400942 | ID=Msa0296290-mRNA-1:exon:15558;Parent=Msa0296290-mRNA-1 |
chr2_3 | CDS | 49395552 | 49395593 | 49395552 | ID=Msa0296290-mRNA-1:cds;Parent=Msa0296290-mRNA-1 |
chr2_3 | CDS | 49395955 | 49396072 | 49395955 | ID=Msa0296290-mRNA-1:cds;Parent=Msa0296290-mRNA-1 |
chr2_3 | CDS | 49400942 | 49401480 | 49400942 | ID=Msa0296290-mRNA-1:cds;Parent=Msa0296290-mRNA-1 |
Gene Sequence |
Protein sequence |