Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258360 | XP_004487732.1 | 66.304 | 552 | 155 | 5 | 167 | 689 | 423 | 972 | 0.0 | 702 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258360 | sp|Q9SJQ6|ROS1_ARATH | 47.893 | 522 | 213 | 12 | 212 | 689 | 838 | 1344 | 9.29e-139 | 443 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258360 | A0A1S2XGM6 | 66.304 | 552 | 155 | 5 | 167 | 689 | 423 | 972 | 0.0 | 702 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0218750 | Msa0258360 | 0.856686 | 2.720018e-62 | -8.615850e-47 |
| Msa0258360 | Msa0297700 | 0.836656 | 8.236477e-57 | -8.615850e-47 |
| Msa0258360 | Msa0335750 | 0.816930 | 4.290418e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258360 | MtrunA17_Chr1g0198151 | 47.368 | 513 | 215 | 13 | 217 | 689 | 1240 | 1737 | 2.14e-138 | 445 |
| Msa0258360 | MtrunA17_Chr1g0179341 | 46.286 | 525 | 220 | 13 | 221 | 689 | 1596 | 2114 | 2.33e-135 | 439 |
| Msa0258360 | MtrunA17_Chr7g0265771 | 42.202 | 545 | 218 | 10 | 235 | 689 | 1180 | 1717 | 1.38e-124 | 407 |
| Msa0258360 | MtrunA17_Chr5g0446571 | 66.300 | 273 | 70 | 4 | 170 | 436 | 223 | 479 | 9.14e-117 | 359 |
| Msa0258360 | MtrunA17_Chr2g0279191 | 65.306 | 245 | 78 | 2 | 154 | 396 | 321 | 560 | 3.49e-105 | 331 |
| Msa0258360 | MtrunA17_Chr2g0320931 | 86.275 | 102 | 14 | 0 | 70 | 171 | 22 | 123 | 7.61e-53 | 178 |
| Msa0258360 | MtrunA17_Chr5g0446581 | 50.323 | 155 | 56 | 2 | 460 | 596 | 14 | 165 | 6.42e-33 | 125 |
| Msa0258360 | MtrunA17_Chr2g0279201 | 80.645 | 62 | 12 | 0 | 629 | 690 | 4 | 65 | 1.11e-30 | 114 |
| Msa0258360 | MtrunA17_Chr5g0446591 | 72.581 | 62 | 17 | 0 | 629 | 690 | 4 | 65 | 9.70e-28 | 106 |
| Msa0258360 | MtrunA17_Chr4g0059441 | 30.894 | 123 | 85 | 0 | 258 | 380 | 115 | 237 | 6.27e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258360 | AT2G36490.1 | 47.893 | 522 | 213 | 12 | 212 | 689 | 838 | 1344 | 9.44e-140 | 443 |
| Msa0258360 | AT5G04560.1 | 44.800 | 500 | 234 | 6 | 230 | 689 | 1186 | 1683 | 1.33e-132 | 429 |
| Msa0258360 | AT5G04560.3 | 44.800 | 500 | 234 | 6 | 230 | 689 | 1186 | 1683 | 1.33e-132 | 429 |
| Msa0258360 | AT5G04560.2 | 44.800 | 500 | 234 | 6 | 230 | 689 | 1444 | 1941 | 7.36e-132 | 429 |
| Msa0258360 | AT4G34060.5 | 41.892 | 518 | 239 | 11 | 219 | 686 | 289 | 794 | 3.41e-115 | 366 |
| Msa0258360 | AT4G34060.4 | 42.115 | 520 | 235 | 12 | 219 | 686 | 426 | 931 | 3.83e-114 | 367 |
| Msa0258360 | AT4G34060.1 | 42.115 | 520 | 235 | 12 | 219 | 686 | 485 | 990 | 1.54e-113 | 366 |
| Msa0258360 | AT4G34060.3 | 42.115 | 520 | 235 | 12 | 219 | 686 | 546 | 1051 | 5.13e-113 | 366 |
| Msa0258360 | AT4G34060.2 | 42.116 | 482 | 217 | 11 | 219 | 650 | 485 | 954 | 2.32e-105 | 343 |
| Msa0258360 | AT3G47830.1 | 31.707 | 123 | 84 | 0 | 258 | 380 | 128 | 250 | 2.88e-13 | 71.6 |
Find 127 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCTATTAGCGTACCTTTC+TGG | 0.182750 | 2_2:-54673283 | Msa0258360:CDS |
| AAGAATCAATGTAAACATTA+TGG | 0.216156 | 2_2:-54671192 | Msa0258360:CDS |
| ACGCTAATGGCGTAGCTTTC+TGG | 0.219624 | 2_2:-54673373 | Msa0258360:CDS |
| GAGAGACGCATAACATATTT+TGG | 0.239718 | 2_2:-54667905 | Msa0258360:CDS |
| TGAACTTGAAAGCACGAAAT+TGG | 0.247433 | 2_2:-54670055 | Msa0258360:CDS |
| TTATGTATTTCAATTGATTC+AGG | 0.266577 | 2_2:+54671608 | None:intergenic |
| ACAAAATTCAACAATATCTT+TGG | 0.271795 | 2_2:-54671485 | Msa0258360:CDS |
| AAAGAATGATCGAGCACTTT+TGG | 0.274579 | 2_2:+54669943 | None:intergenic |
| AGAATTTGTGTTTCTCTCTA+TGG | 0.278808 | 2_2:+54672392 | None:intergenic |
| TCTCTGCTAGCTGGTTTAAC+AGG | 0.286127 | 2_2:+54672729 | None:intergenic |
| GCGCACCTGGAGCGTGAATC+TGG | 0.300276 | 2_2:+54673206 | None:intergenic |
| TGATCCATCCCCTTATCTTT+TGG | 0.317233 | 2_2:-54668725 | Msa0258360:CDS |
| ATGTTACAGGGAGTATCTTA+TGG | 0.322318 | 2_2:-54671859 | Msa0258360:intron |
| AATTGAAATACATAATTTAG+AGG | 0.326895 | 2_2:-54671600 | Msa0258360:CDS |
| GCTAATGGCGTGTTTCTTCA+TGG | 0.330396 | 2_2:-54673323 | Msa0258360:CDS |
| TTGGCATGTCTGATGATTGC+TGG | 0.347876 | 2_2:+54669962 | None:intergenic |
| ATCAATGTGCTGATCACTTT+TGG | 0.357312 | 2_2:+54672260 | None:intergenic |
| TTTGTCCAGTTATGTTCTTC+CGG | 0.358146 | 2_2:-54668921 | Msa0258360:intron |
| GGGAGTATTGAACAAGTTAA+TGG | 0.359003 | 2_2:-54672039 | Msa0258360:CDS |
| TGTTTACATTGATTCTTCAT+TGG | 0.369621 | 2_2:+54671198 | None:intergenic |
| GCCATATAACCAAAAGATAA+GGG | 0.369775 | 2_2:+54668716 | None:intergenic |
| AACAGTTCCAGGAACACTTC+TGG | 0.374742 | 2_2:-54668226 | Msa0258360:intron |
| AACAAGTTAATGGACAAATA+TGG | 0.375942 | 2_2:-54672029 | Msa0258360:CDS |
| TGGAAGAATTGTCGTACGTT+TGG | 0.379229 | 2_2:-54671654 | Msa0258360:CDS |
| ATTTCAATTGATTCAGGTAA+TGG | 0.382281 | 2_2:+54671614 | None:intergenic |
| CACAGCAGTTGTTTGATTTG+TGG | 0.385466 | 2_2:+54670164 | None:intergenic |
| CATTATCAGATGATAACCTT+TGG | 0.386037 | 2_2:-54671336 | Msa0258360:CDS |
| GACATTGGCAGCTCAATTAT+AGG | 0.391376 | 2_2:+54670081 | None:intergenic |
| AGCTACGCCATTAGCGTGGC+TGG | 0.392354 | 2_2:+54673379 | None:intergenic |
| CCAATGTCTTGGAACATTGA+TGG | 0.396331 | 2_2:+54667940 | None:intergenic |
| TAACTAACCAGAAGTGTTCC+TGG | 0.397923 | 2_2:+54668219 | None:intergenic |
| GTTTGATTTGTGGTTGGCTT+GGG | 0.399436 | 2_2:+54670174 | None:intergenic |
| AGAATCAATGTAAACATTAT+GGG | 0.400729 | 2_2:-54671191 | Msa0258360:CDS |
| ATTGGACAAGCATTGCAGTT+TGG | 0.403022 | 2_2:+54671216 | None:intergenic |
| GGTCAAACTCTAACAGTTCC+AGG | 0.404392 | 2_2:-54668237 | Msa0258360:CDS |
| AATTTCGTGCTTTCAAGTTC+AGG | 0.408476 | 2_2:+54670057 | None:intergenic |
| AGAGCTCGATTTCCCTTGAA+TGG | 0.408891 | 2_2:-54668096 | Msa0258360:CDS |
| ATCATGCGGATTCTGTTGAT+TGG | 0.411879 | 2_2:-54672239 | Msa0258360:CDS |
| TGTGGTTGGCTTGGGTGGTA+AGG | 0.414017 | 2_2:+54670182 | None:intergenic |
| TTGCTTTGTTCTCTGCTAGC+TGG | 0.416896 | 2_2:+54672720 | None:intergenic |
| TGTTTGATTTGTGGTTGGCT+TGG | 0.429309 | 2_2:+54670173 | None:intergenic |
| GCTAAAACTATTGAATTTCG+TGG | 0.431193 | 2_2:-54672183 | Msa0258360:CDS |
| TTGAAAGTATGTTCCATTCA+AGG | 0.432334 | 2_2:+54668083 | None:intergenic |
| AGTTCCACTATTATCAACTT+TGG | 0.439814 | 2_2:+54672608 | None:intergenic |
| CTACGCTCCAGCCACGCTAA+TGG | 0.443286 | 2_2:-54673386 | Msa0258360:CDS |
| AGCCATATAACCAAAAGATA+AGG | 0.446683 | 2_2:+54668715 | None:intergenic |
| GGAAAAGCAAAGACAACATT+GGG | 0.448858 | 2_2:-54672304 | Msa0258360:CDS |
| AATCTTCCAAAGTTGATAAC+CGG | 0.449226 | 2_2:-54672437 | Msa0258360:CDS |
| TTGGGCGTTTGTTTCTTACT+AGG | 0.451458 | 2_2:+54672369 | None:intergenic |
| GGAAGAATTGTCGTACGTTT+GGG | 0.452585 | 2_2:-54671653 | Msa0258360:CDS |
| TACATTGGCATGATCTAGTT+GGG | 0.453779 | 2_2:+54670140 | None:intergenic |
| TGAAGAAATAGAAGCTCAAA+AGG | 0.454309 | 2_2:-54672466 | Msa0258360:CDS |
| TAGCGTACCTGGAGCGTAGC+AGG | 0.455963 | 2_2:+54673300 | None:intergenic |
| TCTTATGGACATACATGGAT+TGG | 0.457433 | 2_2:-54671844 | Msa0258360:CDS |
| CGTGGCTGGAGCGTAGAAGC+AGG | 0.458620 | 2_2:+54673393 | None:intergenic |
| GGACTCTTCCAAAGTTATCA+AGG | 0.459023 | 2_2:-54672553 | Msa0258360:CDS |
| TTTCTCTTCCTTCTGCAAGT+TGG | 0.460077 | 2_2:+54668260 | None:intergenic |
| TTCATGGCCTGCTACGCTCC+AGG | 0.462982 | 2_2:-54673307 | Msa0258360:CDS |
| CTTATGGACATACATGGATT+GGG | 0.466206 | 2_2:-54671843 | Msa0258360:CDS |
| GATCTCTTCCTTGATAACTT+TGG | 0.466741 | 2_2:+54672545 | None:intergenic |
| GCTAAGAGATATTCCACAAA+AGG | 0.470658 | 2_2:-54671988 | Msa0258360:CDS |
| CTGTTGATTGGGAAGCACTA+AGG | 0.471548 | 2_2:-54672227 | Msa0258360:CDS |
| ACTTCCAAAGTTGATAATAG+TGG | 0.472938 | 2_2:-54672612 | Msa0258360:CDS |
| TGATTTGTGGTTGGCTTGGG+TGG | 0.480326 | 2_2:+54670177 | None:intergenic |
| ACTAGGAGAGGGTGATTATC+CGG | 0.482481 | 2_2:+54668902 | None:intergenic |
| CTGATGATTGCTGGCTACAT+AGG | 0.486069 | 2_2:+54669971 | None:intergenic |
| TGAAAAGTGTGGAATGCATA+AGG | 0.488344 | 2_2:-54671818 | Msa0258360:CDS |
| AAAGTTGAATTAGAGAGCTC+AGG | 0.493039 | 2_2:-54668297 | Msa0258360:intron |
| CCAATGGGCTGCTGCCACGT+TGG | 0.495367 | 2_2:-54673422 | Msa0258360:CDS |
| ATACATTGGCATGATCTAGT+TGG | 0.499646 | 2_2:+54670139 | None:intergenic |
| CCATCAATGTTCCAAGACAT+TGG | 0.499713 | 2_2:-54667940 | Msa0258360:CDS |
| AATAGCGTGTCTCACGCTAA+TGG | 0.504026 | 2_2:-54673338 | Msa0258360:CDS |
| AGGTACGCTAATAGCGTACC+TGG | 0.507422 | 2_2:+54673289 | None:intergenic |
| CATCAATGTTCCAAGACATT+GGG | 0.507553 | 2_2:-54667939 | Msa0258360:CDS |
| AACATACTTTCAAGTTAATG+AGG | 0.511264 | 2_2:-54668073 | Msa0258360:intron |
| GTGCTCCAGATTCACGCTCC+AGG | 0.513586 | 2_2:-54673211 | Msa0258360:intron |
| TGAAAGTATGTTCCATTCAA+GGG | 0.513646 | 2_2:+54668084 | None:intergenic |
| CCAACGTGGCAGCAGCCCAT+TGG | 0.519199 | 2_2:+54673422 | None:intergenic |
| AACAGTAAATGTTGATACAT+TGG | 0.519889 | 2_2:+54670125 | None:intergenic |
| GTGTTTCTCTCTATGGAAGG+TGG | 0.520761 | 2_2:+54672399 | None:intergenic |
| GCAGTTGTTTGATTTGTGGT+TGG | 0.523509 | 2_2:+54670168 | None:intergenic |
| TCATGCGGATTCTGTTGATT+GGG | 0.526540 | 2_2:-54672238 | Msa0258360:CDS |
| AGATGACATACCCAATGTCT+TGG | 0.534917 | 2_2:+54667929 | None:intergenic |
| ATTTGGTACCTACCTCAACT+AGG | 0.535179 | 2_2:+54668885 | None:intergenic |
| TGGAAAAGCAAAGACAACAT+TGG | 0.536296 | 2_2:-54672305 | Msa0258360:CDS |
| ATTAATATGTACCTTTCCAA+AGG | 0.537033 | 2_2:+54671320 | None:intergenic |
| CTCTGCTAGCTGGTTTAACA+GGG | 0.542680 | 2_2:+54672730 | None:intergenic |
| GAATTGTCGTACGTTTGGGA+TGG | 0.544408 | 2_2:-54671649 | Msa0258360:CDS |
| TGTATCAACATTTACTGTTG+AGG | 0.545389 | 2_2:-54670121 | Msa0258360:CDS |
| CTTTCAAGTTCAGGTGACAT+TGG | 0.546590 | 2_2:+54670066 | None:intergenic |
| TTGAAGGTGGATGTAAATGT+TGG | 0.549947 | 2_2:-54671674 | Msa0258360:intron |
| TTTGTGTTTCTCTCTATGGA+AGG | 0.557369 | 2_2:+54672396 | None:intergenic |
| AATTGTCGTACGTTTGGGAT+GGG | 0.558921 | 2_2:-54671648 | Msa0258360:CDS |
| CAATGTCTTGGAACATTGAT+GGG | 0.565973 | 2_2:+54667941 | None:intergenic |
| CTGTGCGCTCAGTTCTTAAG+CGG | 0.566209 | 2_2:+54669824 | None:intergenic |
| ATCAACATTTACTGTTGAGG+AGG | 0.580102 | 2_2:-54670118 | Msa0258360:CDS |
| GGTGTATTGGCAATAACGAC+AGG | 0.588927 | 2_2:-54667878 | Msa0258360:CDS |
| TCAGATGATAACCTTTGGAA+AGG | 0.589616 | 2_2:-54671331 | Msa0258360:intron |
| GTGGCTGGAGCGTAGAAGCA+GGG | 0.596288 | 2_2:+54673394 | None:intergenic |
| TGAGGATGAAGTAGACATTG+AGG | 0.599234 | 2_2:-54670010 | Msa0258360:CDS |
| CAGAGAACAAAGCAACAACA+TGG | 0.599933 | 2_2:-54672712 | Msa0258360:CDS |
| AAGCAAGACCAACTTGCAGA+AGG | 0.599954 | 2_2:-54668268 | Msa0258360:CDS |
| ATTATGGGAGTTCTATTGCA+AGG | 0.600111 | 2_2:-54671176 | Msa0258360:intron |
| GAGTATCTTATGGACATACA+TGG | 0.601664 | 2_2:-54671849 | Msa0258360:CDS |
| CAAGGAAGAGATCAACAACA+TGG | 0.602485 | 2_2:-54672535 | Msa0258360:CDS |
| TGATCAAGAGTGCATTGTCT+TGG | 0.607613 | 2_2:+54671462 | None:intergenic |
| TGGAGCGTAGAAGCAGGGCA+AGG | 0.608518 | 2_2:+54673399 | None:intergenic |
| TCAACATTTACTGTTGAGGA+GGG | 0.613261 | 2_2:-54670117 | Msa0258360:CDS |
| GATTCAGGTAATGGTTGCAG+AGG | 0.615794 | 2_2:+54671623 | None:intergenic |
| TAATCACCCTCTCCTAGTTG+AGG | 0.616620 | 2_2:-54668897 | Msa0258360:intron |
| GATGGATCATCATGTTCTCG+TGG | 0.618593 | 2_2:+54668739 | None:intergenic |
| CCATATAACCAAAAGATAAG+GGG | 0.620090 | 2_2:+54668717 | None:intergenic |
| TGATCAGCACATTGATCATG+CGG | 0.621438 | 2_2:-54672253 | Msa0258360:CDS |
| GCTCTCATTGCAGTTCGACA+TGG | 0.623999 | 2_2:+54668114 | None:intergenic |
| ATAACCAAAAGATAAGGGGA+TGG | 0.626771 | 2_2:+54668721 | None:intergenic |
| TGGATTGGGATTGAAAAGTG+TGG | 0.627698 | 2_2:-54671829 | Msa0258360:CDS |
| ATTCAGGTAATGGTTGCAGA+GGG | 0.633493 | 2_2:+54671624 | None:intergenic |
| TTAGCGTAATCACTCCAGAA+AGG | 0.634942 | 2_2:+54673269 | None:intergenic |
| TACCTACCTCAACTAGGAGA+GGG | 0.649898 | 2_2:+54668891 | None:intergenic |
| AACTTGCAGAAGGAAGAGAA+AGG | 0.657268 | 2_2:-54668258 | Msa0258360:CDS |
| GTACCTACCTCAACTAGGAG+AGG | 0.662838 | 2_2:+54668890 | None:intergenic |
| AAAATAATAAGTGCATCATG+TGG | 0.679398 | 2_2:+54669868 | None:intergenic |
| AGAAAGCTACGCCATTAGCG+TGG | 0.681782 | 2_2:+54673375 | None:intergenic |
| GGATCATCATGTTCTCGTGG+AGG | 0.683144 | 2_2:+54668742 | None:intergenic |
| ATGGCAGCACGAGTTTAGAG+TGG | 0.685625 | 2_2:-54672010 | Msa0258360:CDS |
| GAAGCAGGGCAAGGCCAACG+TGG | 0.697776 | 2_2:+54673408 | None:intergenic |
| CAGTTGATGAACTAATGTCA+TGG | 0.718160 | 2_2:+54669908 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTAATTTTTTTCTTAA+GGG | + | chr2_2:54670278-54670297 | None:intergenic | 10.0% |
| !! | TTTAATTGTAAAAGAAAAAA+TGG | + | chr2_2:54673117-54673136 | None:intergenic | 10.0% |
| !!! | TTTTTTCTTTTACAATTAAA+AGG | - | chr2_2:54673117-54673136 | Msa0258360:intron | 10.0% |
| !!! | TTTTTCTTTTACAATTAAAA+GGG | - | chr2_2:54673118-54673137 | Msa0258360:intron | 10.0% |
| !! | TTAGTACATTATATATTTGT+AGG | - | chr2_2:54669230-54669249 | Msa0258360:intron | 15.0% |
| !! | TAGTACATTATATATTTGTA+GGG | - | chr2_2:54669231-54669250 | Msa0258360:intron | 15.0% |
| !! | AATTGAAATACATAATTTAG+AGG | - | chr2_2:54669690-54669709 | Msa0258360:intron | 15.0% |
| !!! | TTTTGATTTTCTTATTGAAA+AGG | + | chr2_2:54670012-54670031 | None:intergenic | 15.0% |
| !! | TTGCACTTATTTATTAAATT+TGG | - | chr2_2:54670143-54670162 | Msa0258360:CDS | 15.0% |
| !!! | TTTGTAATTTTTTTCTTAAG+GGG | + | chr2_2:54670277-54670296 | None:intergenic | 15.0% |
| !!! | GTTTTGTAATTTTTTTCTTA+AGG | + | chr2_2:54670279-54670298 | None:intergenic | 15.0% |
| !! | TTATTGACATAAAAATATGA+TGG | + | chr2_2:54670908-54670927 | None:intergenic | 15.0% |
| !! | TAATATTCTTAATTCATTCA+TGG | - | chr2_2:54671542-54671561 | Msa0258360:intron | 15.0% |
| !! | TAAATGTATAAAACCAATTT+GGG | + | chr2_2:54671693-54671712 | None:intergenic | 15.0% |
| !! | TTAAATGTATAAAACCAATT+TGG | + | chr2_2:54671694-54671713 | None:intergenic | 15.0% |
| !! | AGTAAAAGAAAATGTTTATA+AGG | + | chr2_2:54672099-54672118 | None:intergenic | 15.0% |
| !! | CAAATTAGTAGTAATAATTA+TGG | - | chr2_2:54672770-54672789 | Msa0258360:intron | 15.0% |
| !! | TGTCATATTAACACAATATT+TGG | - | chr2_2:54668259-54668278 | Msa0258360:CDS | 20.0% |
| !! | CAAAGTGATATATTTCATAT+AGG | + | chr2_2:54668334-54668353 | None:intergenic | 20.0% |
| !!! | TAATTTACCCAAATTTTCTT+TGG | - | chr2_2:54668473-54668492 | Msa0258360:intron | 20.0% |
| !!! | TCTATCCTTCAATTTTTTAT+CGG | + | chr2_2:54668799-54668818 | None:intergenic | 20.0% |
| !!! | TTCTTACCTTTTTTTGTATT+GGG | + | chr2_2:54668942-54668961 | None:intergenic | 20.0% |
| !!! | TTTCTTACCTTTTTTTGTAT+TGG | + | chr2_2:54668943-54668962 | None:intergenic | 20.0% |
| !! | TACAAAAAAAGGTAAGAAAA+AGG | - | chr2_2:54668944-54668963 | Msa0258360:intron | 20.0% |
| !! | AAATAAATTGTTCATGTTAC+AGG | - | chr2_2:54669418-54669437 | Msa0258360:intron | 20.0% |
| !! | AATAAATTGTTCATGTTACA+GGG | - | chr2_2:54669419-54669438 | Msa0258360:intron | 20.0% |
| !!! | TTATGTATTTCAATTGATTC+AGG | + | chr2_2:54669685-54669704 | None:intergenic | 20.0% |
| !! | ACAAAATTCAACAATATCTT+TGG | - | chr2_2:54669805-54669824 | Msa0258360:intron | 20.0% |
| !!! | ATCATCTTAAATTATTTTGC+AGG | - | chr2_2:54670031-54670050 | Msa0258360:CDS | 20.0% |
| !! | AAGAATCAATGTAAACATTA+TGG | - | chr2_2:54670098-54670117 | Msa0258360:CDS | 20.0% |
| !! | AGAATCAATGTAAACATTAT+GGG | - | chr2_2:54670099-54670118 | Msa0258360:CDS | 20.0% |
| !!! | TTTTTTATTTTTTTTGGCCT+TGG | - | chr2_2:54670400-54670419 | Msa0258360:intron | 20.0% |
| !!! | TTTTTATTTTTTTTGGCCTT+GGG | - | chr2_2:54670401-54670420 | Msa0258360:intron | 20.0% |
| !!! | GTTTTGTAGTTTTTTTCTTA+GGG | - | chr2_2:54670461-54670480 | Msa0258360:intron | 20.0% |
| !!! | CCACATATATATTGTTTTAT+GGG | - | chr2_2:54670534-54670553 | Msa0258360:intron | 20.0% |
| !!! | ATTTTTACTAATGTATATGC+AGG | - | chr2_2:54671075-54671094 | Msa0258360:intron | 20.0% |
| !!! | AATTGGTTGATTTTGAAATA+TGG | - | chr2_2:54671252-54671271 | Msa0258360:intron | 20.0% |
| !! | TCAAATATAAACACATGTTT+AGG | + | chr2_2:54671655-54671674 | None:intergenic | 20.0% |
| !! | TAAACATGTGTTTATATTTG+AGG | - | chr2_2:54671654-54671673 | Msa0258360:CDS | 20.0% |
| !! | AAACATGTGTTTATATTTGA+GGG | - | chr2_2:54671655-54671674 | Msa0258360:CDS | 20.0% |
| !!! | TTGGTTTTATACATTTAAGT+TGG | - | chr2_2:54671696-54671715 | Msa0258360:intron | 20.0% |
| !!! | GTATTTGAAAATGATGTTTT+AGG | - | chr2_2:54671947-54671966 | Msa0258360:intron | 20.0% |
| !!! | ATGTTTTAGGTATTTGAAAA+TGG | - | chr2_2:54671960-54671979 | Msa0258360:intron | 20.0% |
| !! | AAGTATACTTTGTGATTATT+TGG | + | chr2_2:54672425-54672444 | None:intergenic | 20.0% |
| !! | CTTTACACACATATATATAA+AGG | - | chr2_2:54672640-54672659 | Msa0258360:CDS | 20.0% |
| !!! | TACATTTTGTGTATAACTAT+TGG | - | chr2_2:54672690-54672709 | Msa0258360:CDS | 20.0% |
| ! | TTCAAAGCCAAAGAAAATTT+GGG | + | chr2_2:54668483-54668502 | None:intergenic | 25.0% |
| ! | ATTCAAAGCCAAAGAAAATT+TGG | + | chr2_2:54668484-54668503 | None:intergenic | 25.0% |
| ! | ATGTTTCATTGAGAAAAACT+TGG | - | chr2_2:54668716-54668735 | Msa0258360:CDS | 25.0% |
| !!! | TTCAATTTTTTATCGGATTG+AGG | + | chr2_2:54668792-54668811 | None:intergenic | 25.0% |
| ! | TCAATCCGATAAAAAATTGA+AGG | - | chr2_2:54668791-54668810 | Msa0258360:intron | 25.0% |
| ! | AAAAAAAGGTAAGAAAAAGG+AGG | - | chr2_2:54668947-54668966 | Msa0258360:intron | 25.0% |
| ! | AGAAAAAGGAGGAAAAAAAT+AGG | - | chr2_2:54668958-54668977 | Msa0258360:intron | 25.0% |
| !! | CTTTTGACATGTTATTATTG+AGG | - | chr2_2:54669198-54669217 | Msa0258360:intron | 25.0% |
| !! | AACAAGTTAATGGACAAATA+TGG | - | chr2_2:54669261-54669280 | Msa0258360:intron | 25.0% |
| ! | TTTCAACATCTAAGTTTCTT+TGG | - | chr2_2:54669337-54669356 | Msa0258360:intron | 25.0% |
| !! | ATTTCAATTGATTCAGGTAA+TGG | + | chr2_2:54669679-54669698 | None:intergenic | 25.0% |
| !!! | TGTTGAATTTTGTTTGAATC+TGG | + | chr2_2:54669798-54669817 | None:intergenic | 25.0% |
| !! | ATTTATTTGAGCTTTGTATC+AGG | - | chr2_2:54669882-54669901 | Msa0258360:CDS | 25.0% |
| ! | TATGATATCTTGCTTTGTAT+AGG | - | chr2_2:54669922-54669941 | Msa0258360:CDS | 25.0% |
| ! | ATTAATATGTACCTTTCCAA+AGG | + | chr2_2:54669973-54669992 | None:intergenic | 25.0% |
| !!! | TGTTTACATTGATTCTTCAT+TGG | + | chr2_2:54670095-54670114 | None:intergenic | 25.0% |
| ! | TAAATTTGGAGAACACTTTA+TGG | - | chr2_2:54670157-54670176 | Msa0258360:CDS | 25.0% |
| !! | AGCTTTGACAATACATATAT+AGG | - | chr2_2:54670203-54670222 | Msa0258360:intron | 25.0% |
| !!! | TTTTATTTTTTTTGGCCTTG+GGG | - | chr2_2:54670402-54670421 | Msa0258360:intron | 25.0% |
| !!! | GGTTTTGTAGTTTTTTTCTT+AGG | - | chr2_2:54670460-54670479 | Msa0258360:intron | 25.0% |
| !!! | GCCACATATATATTGTTTTA+TGG | - | chr2_2:54670533-54670552 | Msa0258360:intron | 25.0% |
| ! | CCCATAAAACAATATATATG+TGG | + | chr2_2:54670537-54670556 | None:intergenic | 25.0% |
| !! | ATGGGAAAGTTTATTTGTTT+TGG | - | chr2_2:54670552-54670571 | Msa0258360:intron | 25.0% |
| !!! | TGGGAAAGTTTATTTGTTTT+GGG | - | chr2_2:54670553-54670572 | Msa0258360:intron | 25.0% |
| ! | ACATTCTACAATTAACATGA+TGG | + | chr2_2:54670694-54670713 | None:intergenic | 25.0% |
| !! | GCTAAACAACATCTAAAATT+AGG | + | chr2_2:54670944-54670963 | None:intergenic | 25.0% |
| ! | GGTAACTTATGATTACATAA+AGG | + | chr2_2:54670987-54671006 | None:intergenic | 25.0% |
| ! | TGAATATGAGTATGTGTTAA+TGG | + | chr2_2:54671008-54671027 | None:intergenic | 25.0% |
| ! | ATTCATTTACCCATTATGAT+TGG | - | chr2_2:54671023-54671042 | Msa0258360:intron | 25.0% |
| ! | ATAGCAAAACCAATCATAAT+GGG | + | chr2_2:54671035-54671054 | None:intergenic | 25.0% |
| ! | TATAGCAAAACCAATCATAA+TGG | + | chr2_2:54671036-54671055 | None:intergenic | 25.0% |
| ! | AACAGTAAATGTTGATACAT+TGG | + | chr2_2:54671168-54671187 | None:intergenic | 25.0% |
| ! | AAAATAATAAGTGCATCATG+TGG | + | chr2_2:54671425-54671444 | None:intergenic | 25.0% |
| ! | AGAAAGATGATAATAACTCT+TGG | + | chr2_2:54671736-54671755 | None:intergenic | 25.0% |
| !!! | CGCAAACAATTATTACTTTT+AGG | - | chr2_2:54672073-54672092 | Msa0258360:intron | 25.0% |
| !! | TTTGAAGTTATTAGCTAACA+AGG | + | chr2_2:54672204-54672223 | None:intergenic | 25.0% |
| ! | AACATAACTGGACAAATAAA+GGG | + | chr2_2:54672365-54672384 | None:intergenic | 25.0% |
| ! | CATCTAGTAATTTGAAAGAA+AGG | - | chr2_2:54672820-54672839 | Msa0258360:intron | 25.0% |
| !!! | AACATACTTTCAAGTTAATG+AGG | - | chr2_2:54673217-54673236 | Msa0258360:CDS | 25.0% |
| ! | TAAAACTACTACTGAATGTT+TGG | - | chr2_2:54673248-54673267 | Msa0258360:CDS | 25.0% |
| !!! | TGTAACATTTCCCTTTTTTT+AGG | - | chr2_2:54673297-54673316 | Msa0258360:CDS | 25.0% |
| GCAAGAAAAGTCAAAATTCA+AGG | + | chr2_2:54668184-54668203 | None:intergenic | 30.0% | |
| ! | TGTATTTTCCTGCACAAAAA+TGG | - | chr2_2:54668212-54668231 | Msa0258360:intron | 30.0% |
| !! | TTATTCTACCATTTTTGTGC+AGG | + | chr2_2:54668223-54668242 | None:intergenic | 30.0% |
| TGCACAAAAATGGTAGAATA+AGG | - | chr2_2:54668222-54668241 | Msa0258360:intron | 30.0% | |
| !! | TTGTTTTGCAAGATTCTCTA+TGG | + | chr2_2:54668291-54668310 | None:intergenic | 30.0% |
| ACACTTATCAATTCTTACCA+TGG | - | chr2_2:54668356-54668375 | Msa0258360:intron | 30.0% | |
| TATCAATTCTTACCATGGAA+AGG | - | chr2_2:54668361-54668380 | Msa0258360:intron | 30.0% | |
| !! | ACTTCCAAAGTTGATAATAG+TGG | - | chr2_2:54668678-54668697 | Msa0258360:intron | 30.0% |
| AGTTCCACTATTATCAACTT+TGG | + | chr2_2:54668685-54668704 | None:intergenic | 30.0% | |
| TGAAGAAATAGAAGCTCAAA+AGG | - | chr2_2:54668824-54668843 | Msa0258360:intron | 30.0% | |
| !! | AATCTTCCAAAGTTGATAAC+CGG | - | chr2_2:54668853-54668872 | Msa0258360:intron | 30.0% |
| !!! | GTGGACTATTTTTAGTTTTC+CGG | + | chr2_2:54668875-54668894 | None:intergenic | 30.0% |
| AGAATTTGTGTTTCTCTCTA+TGG | + | chr2_2:54668901-54668920 | None:intergenic | 30.0% | |
| !!! | ATAGTTTTAGCAACTTCACT+AGG | + | chr2_2:54669098-54669117 | None:intergenic | 30.0% |
| GCTAAAACTATTGAATTTCG+TGG | - | chr2_2:54669107-54669126 | Msa0258360:intron | 30.0% | |
| !!! | CCTGTACATTTTTAGTAATC+AGG | + | chr2_2:54669142-54669161 | None:intergenic | 30.0% |
| CCTGATTACTAAAAATGTAC+AGG | - | chr2_2:54669139-54669158 | Msa0258360:intron | 30.0% | |
| !!! | ACACTATTTTGTTCTGAAAC+AGG | - | chr2_2:54669769-54669788 | Msa0258360:intron | 30.0% |
| CATTATCAGATGATAACCTT+TGG | - | chr2_2:54669954-54669973 | Msa0258360:CDS | 30.0% | |
| ! | TCATAACTTTGGGAAAGTTA+GGG | + | chr2_2:54670248-54670267 | None:intergenic | 30.0% |
| ! | ATCATAACTTTGGGAAAGTT+AGG | + | chr2_2:54670249-54670268 | None:intergenic | 30.0% |
| CTTTCCCAAAGTTATGATTT+AGG | - | chr2_2:54670251-54670270 | Msa0258360:intron | 30.0% | |
| !!! | TTTATTTTTTTTGGCCTTGG+GGG | - | chr2_2:54670403-54670422 | Msa0258360:intron | 30.0% |
| TGCTACAGTTGCAAAATTTA+GGG | - | chr2_2:54670434-54670453 | Msa0258360:intron | 30.0% | |
| !!! | GGGAAAGTTTATTTGTTTTG+GGG | - | chr2_2:54670554-54670573 | Msa0258360:intron | 30.0% |
| !!! | TTGCATCTGAAAGTTTTTTG+CGG | + | chr2_2:54670607-54670626 | None:intergenic | 30.0% |
| ACAAGGTACAATTAACATGA+TGG | + | chr2_2:54670660-54670679 | None:intergenic | 30.0% | |
| TGTATCAACATTTACTGTTG+AGG | - | chr2_2:54671169-54671188 | Msa0258360:intron | 30.0% | |
| !!! | TTTTGAAATATGGCATGATG+AGG | - | chr2_2:54671262-54671281 | Msa0258360:intron | 30.0% |
| TGACAATAGTAAGAAACACA+TGG | + | chr2_2:54671606-54671625 | None:intergenic | 30.0% | |
| GAAATCTTCATATCCCAAAT+TGG | - | chr2_2:54671677-54671696 | Msa0258360:intron | 30.0% | |
| GATAATAACTCTTGGAATGA+TGG | + | chr2_2:54671728-54671747 | None:intergenic | 30.0% | |
| TCATGTAAGAAGTCTAGTAA+TGG | + | chr2_2:54672018-54672037 | None:intergenic | 30.0% | |
| !!! | TCACTTTTCAAGTAAGTCAA+TGG | + | chr2_2:54672041-54672060 | None:intergenic | 30.0% |
| TACGAAGTACATTTCAACAA+TGG | + | chr2_2:54672148-54672167 | None:intergenic | 30.0% | |
| TAAACAGTTACAATGCATGT+GGG | - | chr2_2:54672166-54672185 | Msa0258360:CDS | 30.0% | |
| ACATAACTGGACAAATAAAG+GGG | + | chr2_2:54672364-54672383 | None:intergenic | 30.0% | |
| GAACATAACTGGACAAATAA+AGG | + | chr2_2:54672366-54672385 | None:intergenic | 30.0% | |
| CCATATAACCAAAAGATAAG+GGG | + | chr2_2:54672576-54672595 | None:intergenic | 30.0% | |
| GCCATATAACCAAAAGATAA+GGG | + | chr2_2:54672577-54672596 | None:intergenic | 30.0% | |
| AGCCATATAACCAAAAGATA+AGG | + | chr2_2:54672578-54672597 | None:intergenic | 30.0% | |
| TATGTGTGTAAAGTCGAAAA+AGG | + | chr2_2:54672633-54672652 | None:intergenic | 30.0% | |
| TACTAAATTGCTCTCTGTAT+AGG | - | chr2_2:54672713-54672732 | Msa0258360:CDS | 30.0% | |
| ! | TGAAAGTATGTTCCATTCAA+GGG | + | chr2_2:54673209-54673228 | None:intergenic | 30.0% |
| ! | TTGAAAGTATGTTCCATTCA+AGG | + | chr2_2:54673210-54673229 | None:intergenic | 30.0% |
| TCAGCGAAAACCTAAAAAAA+GGG | + | chr2_2:54673310-54673329 | None:intergenic | 30.0% | |
| !!! | ATATTTTGGTACTGGTGTAT+TGG | - | chr2_2:54673399-54673418 | Msa0258360:CDS | 30.0% |
| ! | GATCTCTTCCTTGATAACTT+TGG | + | chr2_2:54668748-54668767 | None:intergenic | 35.0% |
| ! | AGTTTTCCGGTTATCAACTT+TGG | + | chr2_2:54668862-54668881 | None:intergenic | 35.0% |
| TTTGTGTTTCTCTCTATGGA+AGG | + | chr2_2:54668897-54668916 | None:intergenic | 35.0% | |
| CAAACGCCCAATACAAAAAA+AGG | - | chr2_2:54668933-54668952 | Msa0258360:intron | 35.0% | |
| GGAGGAAAAAAATAGGTTGT+TGG | - | chr2_2:54668965-54668984 | Msa0258360:intron | 35.0% | |
| TGGAAAAGCAAAGACAACAT+TGG | - | chr2_2:54668985-54669004 | Msa0258360:intron | 35.0% | |
| GGAAAAGCAAAGACAACATT+GGG | - | chr2_2:54668986-54669005 | Msa0258360:intron | 35.0% | |
| !! | ATCAATGTGCTGATCACTTT+TGG | + | chr2_2:54669033-54669052 | None:intergenic | 35.0% |
| !! | GGGAGTATTGAACAAGTTAA+TGG | - | chr2_2:54669251-54669270 | Msa0258360:intron | 35.0% |
| GCTAAGAGATATTCCACAAA+AGG | - | chr2_2:54669302-54669321 | Msa0258360:intron | 35.0% | |
| ! | ACTTACTTTGCTTCCTTTTG+TGG | + | chr2_2:54669318-54669337 | None:intergenic | 35.0% |
| ATTAGACAAACTCACGTTGA+TGG | + | chr2_2:54669397-54669416 | None:intergenic | 35.0% | |
| !! | ATGTTACAGGGAGTATCTTA+TGG | - | chr2_2:54669431-54669450 | Msa0258360:intron | 35.0% |
| GAGTATCTTATGGACATACA+TGG | - | chr2_2:54669441-54669460 | Msa0258360:intron | 35.0% | |
| TCTTATGGACATACATGGAT+TGG | - | chr2_2:54669446-54669465 | Msa0258360:intron | 35.0% | |
| CTTATGGACATACATGGATT+GGG | - | chr2_2:54669447-54669466 | Msa0258360:intron | 35.0% | |
| ! | TGAAAAGTGTGGAATGCATA+AGG | - | chr2_2:54669472-54669491 | Msa0258360:intron | 35.0% |
| !!! | ACTTCAACATGTTGCTTTTC+CGG | - | chr2_2:54669503-54669522 | Msa0258360:intron | 35.0% |
| ! | AAAGTATTTGCCACTGTTGA+AGG | - | chr2_2:54669600-54669619 | Msa0258360:intron | 35.0% |
| TTGAAGGTGGATGTAAATGT+TGG | - | chr2_2:54669616-54669635 | Msa0258360:intron | 35.0% | |
| ! | TCAGATGATAACCTTTGGAA+AGG | - | chr2_2:54669959-54669978 | Msa0258360:CDS | 35.0% |
| ATTATGGGAGTTCTATTGCA+AGG | - | chr2_2:54670114-54670133 | Msa0258360:CDS | 35.0% | |
| AACACTTTATGGCTTGATGT+TGG | - | chr2_2:54670168-54670187 | Msa0258360:CDS | 35.0% | |
| ! | ATAACTTTGGGAAAGTTAGG+GGG | + | chr2_2:54670246-54670265 | None:intergenic | 35.0% |
| ! | CATAACTTTGGGAAAGTTAG+GGG | + | chr2_2:54670247-54670266 | None:intergenic | 35.0% |
| !!! | TTATTTTTTTTGGCCTTGGG+GGG | - | chr2_2:54670404-54670423 | Msa0258360:intron | 35.0% |
| ! | TTTTGCAACTGTAGCAGTTT+TGG | + | chr2_2:54670430-54670449 | None:intergenic | 35.0% |
| CTGCTACAGTTGCAAAATTT+AGG | - | chr2_2:54670433-54670452 | Msa0258360:intron | 35.0% | |
| GCTACAGTTGCAAAATTTAG+GGG | - | chr2_2:54670435-54670454 | Msa0258360:intron | 35.0% | |
| CTACAGTTGCAAAATTTAGG+GGG | - | chr2_2:54670436-54670455 | Msa0258360:intron | 35.0% | |
| !!! | ATCTGAAAGTTTTTTGCGGT+AGG | + | chr2_2:54670603-54670622 | None:intergenic | 35.0% |
| TACATTGGCATGATCTAGTT+GGG | + | chr2_2:54671153-54671172 | None:intergenic | 35.0% | |
| ATACATTGGCATGATCTAGT+TGG | + | chr2_2:54671154-54671173 | None:intergenic | 35.0% | |
| ATCAACATTTACTGTTGAGG+AGG | - | chr2_2:54671172-54671191 | Msa0258360:intron | 35.0% | |
| TCAACATTTACTGTTGAGGA+GGG | - | chr2_2:54671173-54671192 | Msa0258360:intron | 35.0% | |
| !! | AATTTCGTGCTTTCAAGTTC+AGG | + | chr2_2:54671236-54671255 | None:intergenic | 35.0% |
| ! | TGAACTTGAAAGCACGAAAT+TGG | - | chr2_2:54671235-54671254 | Msa0258360:CDS | 35.0% |
| ! | AAAGAATGATCGAGCACTTT+TGG | + | chr2_2:54671350-54671369 | None:intergenic | 35.0% |
| !! | CAGTTGATGAACTAATGTCA+TGG | + | chr2_2:54671385-54671404 | None:intergenic | 35.0% |
| GGTCAAATCTCATTCAATGT+GGG | + | chr2_2:54671634-54671653 | None:intergenic | 35.0% | |
| AGGTCAAATCTCATTCAATG+TGG | + | chr2_2:54671635-54671654 | None:intergenic | 35.0% | |
| TGTACAAAGTACAATGAGCA+GGG | + | chr2_2:54671884-54671903 | None:intergenic | 35.0% | |
| TTGTACAAAGTACAATGAGC+AGG | + | chr2_2:54671885-54671904 | None:intergenic | 35.0% | |
| GTAAACAGTTACAATGCATG+TGG | - | chr2_2:54672165-54672184 | Msa0258360:CDS | 35.0% | |
| ATAACTGGACAAATAAAGGG+GGG | + | chr2_2:54672362-54672381 | None:intergenic | 35.0% | |
| CATAACTGGACAAATAAAGG+GGG | + | chr2_2:54672363-54672382 | None:intergenic | 35.0% | |
| TTTGTCCAGTTATGTTCTTC+CGG | - | chr2_2:54672369-54672388 | Msa0258360:CDS | 35.0% | |
| ATTATCCGGAAGAACATAAC+TGG | + | chr2_2:54672377-54672396 | None:intergenic | 35.0% | |
| ATAACCAAAAGATAAGGGGA+TGG | + | chr2_2:54672572-54672591 | None:intergenic | 35.0% | |
| !! | CCCCTTATCTTTTGGTTATA+TGG | - | chr2_2:54672573-54672592 | Msa0258360:CDS | 35.0% |
| !! | CTTTTGGTTATATGGCTATC+AGG | - | chr2_2:54672581-54672600 | Msa0258360:CDS | 35.0% |
| CGAAAAAGGACTGATAAGAA+GGG | + | chr2_2:54672619-54672638 | None:intergenic | 35.0% | |
| TCGAAAAAGGACTGATAAGA+AGG | + | chr2_2:54672620-54672639 | None:intergenic | 35.0% | |
| AAAGTTGAATTAGAGAGCTC+AGG | - | chr2_2:54672993-54673012 | Msa0258360:intron | 35.0% | |
| GTCAGCGAAAACCTAAAAAA+AGG | + | chr2_2:54673311-54673330 | None:intergenic | 35.0% | |
| CAATGTCTTGGAACATTGAT+GGG | + | chr2_2:54673352-54673371 | None:intergenic | 35.0% | |
| CATCAATGTTCCAAGACATT+GGG | - | chr2_2:54673351-54673370 | Msa0258360:CDS | 35.0% | |
| ! | GAGAGACGCATAACATATTT+TGG | - | chr2_2:54673385-54673404 | Msa0258360:CDS | 35.0% |
| !!! | CGCATAACATATTTTGGTAC+TGG | - | chr2_2:54673391-54673410 | Msa0258360:CDS | 35.0% |
| TTAGCGTAATCACTCCAGAA+AGG | + | chr2_2:54668024-54668043 | None:intergenic | 40.0% | |
| TGTGCAGGAAAATACAAGCA+AGG | + | chr2_2:54668208-54668227 | None:intergenic | 40.0% | |
| !! | TCCGTTTTAGATTCTGTGGT+TGG | - | chr2_2:54668385-54668404 | Msa0258360:intron | 40.0% |
| GCCAACCACAGAATCTAAAA+CGG | + | chr2_2:54668389-54668408 | None:intergenic | 40.0% | |
| ! | CACACTTTGAGTTAAGCAGA+CGG | + | chr2_2:54668414-54668433 | None:intergenic | 40.0% |
| CAGAGAACAAAGCAACAACA+TGG | - | chr2_2:54668578-54668597 | Msa0258360:intron | 40.0% | |
| GGACTCTTCCAAAGTTATCA+AGG | - | chr2_2:54668737-54668756 | Msa0258360:CDS | 40.0% | |
| CAAGGAAGAGATCAACAACA+TGG | - | chr2_2:54668755-54668774 | Msa0258360:intron | 40.0% | |
| ! | TTGGGCGTTTGTTTCTTACT+AGG | + | chr2_2:54668924-54668943 | None:intergenic | 40.0% |
| TGATCAGCACATTGATCATG+CGG | - | chr2_2:54669037-54669056 | Msa0258360:intron | 40.0% | |
| ATCATGCGGATTCTGTTGAT+TGG | - | chr2_2:54669051-54669070 | Msa0258360:intron | 40.0% | |
| ! | TCATGCGGATTCTGTTGATT+GGG | - | chr2_2:54669052-54669071 | Msa0258360:intron | 40.0% |
| ! | TGGATTGGGATTGAAAAGTG+TGG | - | chr2_2:54669461-54669480 | Msa0258360:intron | 40.0% |
| TTGTCTTCGCATATTCTCAC+CGG | + | chr2_2:54669525-54669544 | None:intergenic | 40.0% | |
| TTTACATCCACCTTCAACAG+TGG | + | chr2_2:54669613-54669632 | None:intergenic | 40.0% | |
| TGGAAGAATTGTCGTACGTT+TGG | - | chr2_2:54669636-54669655 | Msa0258360:intron | 40.0% | |
| GGAAGAATTGTCGTACGTTT+GGG | - | chr2_2:54669637-54669656 | Msa0258360:intron | 40.0% | |
| ! | AATTGTCGTACGTTTGGGAT+GGG | - | chr2_2:54669642-54669661 | Msa0258360:intron | 40.0% |
| ! | ATTCAGGTAATGGTTGCAGA+GGG | + | chr2_2:54669669-54669688 | None:intergenic | 40.0% |
| ! | TGATCAAGAGTGCATTGTCT+TGG | + | chr2_2:54669831-54669850 | None:intergenic | 40.0% |
| ! | ATTGGACAAGCATTGCAGTT+TGG | + | chr2_2:54670077-54670096 | None:intergenic | 40.0% |
| GGGGCCTAAATCATAACTTT+GGG | + | chr2_2:54670258-54670277 | None:intergenic | 40.0% | |
| AGGGGCCTAAATCATAACTT+TGG | + | chr2_2:54670259-54670278 | None:intergenic | 40.0% | |
| TGCCACATGTGCAAAACTTA+GGG | + | chr2_2:54670306-54670325 | None:intergenic | 40.0% | |
| ! | CTTTCACGAAGTTGCGATTT+TGG | + | chr2_2:54670489-54670508 | None:intergenic | 40.0% |
| ATCGCAACTTCGTGAAAGTT+AGG | - | chr2_2:54670491-54670510 | Msa0258360:intron | 40.0% | |
| TCGCAACTTCGTGAAAGTTA+GGG | - | chr2_2:54670492-54670511 | Msa0258360:intron | 40.0% | |
| !! | TGATGGTGCTTTTAGAGACA+AGG | + | chr2_2:54670643-54670662 | None:intergenic | 40.0% |
| !! | TGATGGTGCTTTTAGAGACA+AGG | + | chr2_2:54670643-54670662 | None:intergenic | 40.0% |
| !! | GTTTGATTTGTGGTTGGCTT+GGG | + | chr2_2:54671119-54671138 | None:intergenic | 40.0% |
| !! | TGTTTGATTTGTGGTTGGCT+TGG | + | chr2_2:54671120-54671139 | None:intergenic | 40.0% |
| !! | GCAGTTGTTTGATTTGTGGT+TGG | + | chr2_2:54671125-54671144 | None:intergenic | 40.0% |
| !! | CACAGCAGTTGTTTGATTTG+TGG | + | chr2_2:54671129-54671148 | None:intergenic | 40.0% |
| GACATTGGCAGCTCAATTAT+AGG | + | chr2_2:54671212-54671231 | None:intergenic | 40.0% | |
| !! | CTTTCAAGTTCAGGTGACAT+TGG | + | chr2_2:54671227-54671246 | None:intergenic | 40.0% |
| TGAGGATGAAGTAGACATTG+AGG | - | chr2_2:54671280-54671299 | Msa0258360:intron | 40.0% | |
| ! | CGGCTGACACTTTTCATTTT+TGG | + | chr2_2:54671449-54671468 | None:intergenic | 40.0% |
| GTACAAAGTACAATGAGCAG+GGG | + | chr2_2:54671883-54671902 | None:intergenic | 40.0% | |
| ATTTGGTACCTACCTCAACT+AGG | + | chr2_2:54672408-54672427 | None:intergenic | 40.0% | |
| ! | TGATCCATCCCCTTATCTTT+TGG | - | chr2_2:54672565-54672584 | Msa0258360:CDS | 40.0% |
| GACTGATAAGAAGGGACAAA+GGG | + | chr2_2:54672611-54672630 | None:intergenic | 40.0% | |
| TTTCTCTTCCTTCTGCAAGT+TGG | + | chr2_2:54673033-54673052 | None:intergenic | 40.0% | |
| AACTTGCAGAAGGAAGAGAA+AGG | - | chr2_2:54673032-54673051 | Msa0258360:intron | 40.0% | |
| !! | TAACTAACCAGAAGTGTTCC+TGG | + | chr2_2:54673074-54673093 | None:intergenic | 40.0% |
| CCAATGTCTTGGAACATTGA+TGG | + | chr2_2:54673353-54673372 | None:intergenic | 40.0% | |
| CCATCAATGTTCCAAGACAT+TGG | - | chr2_2:54673350-54673369 | Msa0258360:CDS | 40.0% | |
| AGATGACATACCCAATGTCT+TGG | + | chr2_2:54673364-54673383 | None:intergenic | 40.0% | |
| AATAGCGTGTCTCACGCTAA+TGG | - | chr2_2:54667952-54667971 | Msa0258360:CDS | 45.0% | |
| GCTAATGGCGTGTTTCTTCA+TGG | - | chr2_2:54667967-54667986 | Msa0258360:CDS | 45.0% | |
| ACGCTATTAGCGTACCTTTC+TGG | - | chr2_2:54668007-54668026 | Msa0258360:intron | 45.0% | |
| AGAAAAGCCCAAGGTCAGAA+AGG | + | chr2_2:54668120-54668139 | None:intergenic | 45.0% | |
| AATAGCGTAGGACACGCTAA+TGG | - | chr2_2:54668150-54668169 | Msa0258360:intron | 45.0% | |
| ! | TCTAAAACGGAGCCTTTCCA+TGG | + | chr2_2:54668376-54668395 | None:intergenic | 45.0% |
| !! | AGGCTCCGTTTTAGATTCTG+TGG | - | chr2_2:54668381-54668400 | Msa0258360:intron | 45.0% |
| ! | CTCTGCTAGCTGGTTTAACA+GGG | + | chr2_2:54668563-54668582 | None:intergenic | 45.0% |
| ! | TCTCTGCTAGCTGGTTTAAC+AGG | + | chr2_2:54668564-54668583 | None:intergenic | 45.0% |
| ! | TTGCTTTGTTCTCTGCTAGC+TGG | + | chr2_2:54668573-54668592 | None:intergenic | 45.0% |
| GTGTTTCTCTCTATGGAAGG+TGG | + | chr2_2:54668894-54668913 | None:intergenic | 45.0% | |
| !! | TGTGCTGATCACTTTTGGTG+TGG | + | chr2_2:54669028-54669047 | None:intergenic | 45.0% |
| !! | CTGTTGATTGGGAAGCACTA+AGG | - | chr2_2:54669063-54669082 | Msa0258360:intron | 45.0% |
| GTATTTGCCACTGTTGAAGG+TGG | - | chr2_2:54669603-54669622 | Msa0258360:intron | 45.0% | |
| GAATTGTCGTACGTTTGGGA+TGG | - | chr2_2:54669641-54669660 | Msa0258360:intron | 45.0% | |
| ! | GATTCAGGTAATGGTTGCAG+AGG | + | chr2_2:54669670-54669689 | None:intergenic | 45.0% |
| CCACATGTGCAAAACTTAGG+GGG | + | chr2_2:54670304-54670323 | None:intergenic | 45.0% | |
| GCCACATGTGCAAAACTTAG+GGG | + | chr2_2:54670305-54670324 | None:intergenic | 45.0% | |
| CTGCCACATGTGCAAAACTT+AGG | + | chr2_2:54670307-54670326 | None:intergenic | 45.0% | |
| !! | ACCGAGTCAAAATTGGCCTT+GGG | + | chr2_2:54670338-54670357 | None:intergenic | 45.0% |
| AGCGTAGACCGAGTCAAAAT+TGG | + | chr2_2:54670345-54670364 | None:intergenic | 45.0% | |
| CAGTTGCAAAATTTAGGGGG+CGG | - | chr2_2:54670439-54670458 | Msa0258360:intron | 45.0% | |
| CGCAACTTCGTGAAAGTTAG+GGG | - | chr2_2:54670493-54670512 | Msa0258360:intron | 45.0% | |
| GCAACTTCGTGAAAGTTAGG+GGG | - | chr2_2:54670494-54670513 | Msa0258360:intron | 45.0% | |
| !! | GGTGCTTTTAGAGACAAGGT+TGG | + | chr2_2:54670639-54670658 | None:intergenic | 45.0% |
| ! | CTGATGATTGCTGGCTACAT+AGG | + | chr2_2:54671322-54671341 | None:intergenic | 45.0% |
| TTGGCATGTCTGATGATTGC+TGG | + | chr2_2:54671331-54671350 | None:intergenic | 45.0% | |
| ACTAGGAGAGGGTGATTATC+CGG | + | chr2_2:54672391-54672410 | None:intergenic | 45.0% | |
| TAATCACCCTCTCCTAGTTG+AGG | - | chr2_2:54672393-54672412 | Msa0258360:CDS | 45.0% | |
| TACCTACCTCAACTAGGAGA+GGG | + | chr2_2:54672402-54672421 | None:intergenic | 45.0% | |
| GATGGATCATCATGTTCTCG+TGG | + | chr2_2:54672554-54672573 | None:intergenic | 45.0% | |
| GGACTGATAAGAAGGGACAA+AGG | + | chr2_2:54672612-54672631 | None:intergenic | 45.0% | |
| AAGCAAGACCAACTTGCAGA+AGG | - | chr2_2:54673022-54673041 | Msa0258360:intron | 45.0% | |
| GGTCAAACTCTAACAGTTCC+AGG | - | chr2_2:54673053-54673072 | Msa0258360:intron | 45.0% | |
| AACAGTTCCAGGAACACTTC+TGG | - | chr2_2:54673064-54673083 | Msa0258360:intron | 45.0% | |
| AGAGCTCGATTTCCCTTGAA+TGG | - | chr2_2:54673194-54673213 | Msa0258360:intron | 45.0% | |
| ! | GGTGTATTGGCAATAACGAC+AGG | - | chr2_2:54673412-54673431 | Msa0258360:CDS | 45.0% |
| !!! | GTTATTTTTTTTATTTTTTT+TGG | - | chr2_2:54670394-54670413 | Msa0258360:intron | 5.0% |
| AGAAAGCTACGCCATTAGCG+TGG | + | chr2_2:54667918-54667937 | None:intergenic | 50.0% | |
| ACGCTAATGGCGTAGCTTTC+TGG | - | chr2_2:54667917-54667936 | Msa0258360:CDS | 50.0% | |
| AGGTACGCTAATAGCGTACC+TGG | + | chr2_2:54668004-54668023 | None:intergenic | 50.0% | |
| ! | AGGTCAGAAAGGTACGCCAA+TGG | + | chr2_2:54668109-54668128 | None:intergenic | 50.0% |
| TTGGCGTACCTTTCTGACCT+TGG | - | chr2_2:54668109-54668128 | Msa0258360:CDS | 50.0% | |
| TGGCGTACCTTTCTGACCTT+GGG | - | chr2_2:54668110-54668129 | Msa0258360:CDS | 50.0% | |
| CTTCCTCACGCTAATAGCGT+AGG | - | chr2_2:54668138-54668157 | Msa0258360:intron | 50.0% | |
| TGTCCTACGCTATTAGCGTG+AGG | + | chr2_2:54668144-54668163 | None:intergenic | 50.0% | |
| GTGTGAGAGACTCTTCGTCA+AGG | - | chr2_2:54668429-54668448 | Msa0258360:intron | 50.0% | |
| ATGGCAGCACGAGTTTAGAG+TGG | - | chr2_2:54669280-54669299 | Msa0258360:intron | 50.0% | |
| CATGTGCAAAACTTAGGGGG+TGG | + | chr2_2:54670301-54670320 | None:intergenic | 50.0% | |
| ! | CCCCCTAAGTTTTGCACATG+TGG | - | chr2_2:54670301-54670320 | Msa0258360:intron | 50.0% |
| !! | CGAGTCAAAATTGGCCTTGG+GGG | + | chr2_2:54670336-54670355 | None:intergenic | 50.0% |
| !! | CCGAGTCAAAATTGGCCTTG+GGG | + | chr2_2:54670337-54670356 | None:intergenic | 50.0% |
| !!! | CCCCAAGGCCAATTTTGACT+CGG | - | chr2_2:54670334-54670353 | Msa0258360:intron | 50.0% |
| ! | GACCGAGTCAAAATTGGCCT+TGG | + | chr2_2:54670339-54670358 | None:intergenic | 50.0% |
| AACACGTAGCACCCCACTTA+GGG | + | chr2_2:54670377-54670396 | None:intergenic | 50.0% | |
| TAACACGTAGCACCCCACTT+AGG | + | chr2_2:54670378-54670397 | None:intergenic | 50.0% | |
| !! | TGATTTGTGGTTGGCTTGGG+TGG | + | chr2_2:54671116-54671135 | None:intergenic | 50.0% |
| CTGTGCGCTCAGTTCTTAAG+CGG | + | chr2_2:54671469-54671488 | None:intergenic | 50.0% | |
| GTACCTACCTCAACTAGGAG+AGG | + | chr2_2:54672403-54672422 | None:intergenic | 50.0% | |
| GGATCATCATGTTCTCGTGG+AGG | + | chr2_2:54672551-54672570 | None:intergenic | 50.0% | |
| GCTCTCATTGCAGTTCGACA+TGG | + | chr2_2:54673179-54673198 | None:intergenic | 50.0% | |
| GCGTGAGGAAGAAAAGCCCA+AGG | + | chr2_2:54668129-54668148 | None:intergenic | 55.0% | |
| ! | TGTGGCAGTTTTTGCCCCCA+AGG | - | chr2_2:54670319-54670338 | Msa0258360:intron | 55.0% |
| GCTGACGTGACACCCTAAGT+GGG | - | chr2_2:54670362-54670381 | Msa0258360:intron | 55.0% | |
| CTGACGTGACACCCTAAGTG+GGG | - | chr2_2:54670363-54670382 | Msa0258360:intron | 55.0% | |
| !! | TGTGGTTGGCTTGGGTGGTA+AGG | + | chr2_2:54671111-54671130 | None:intergenic | 55.0% |
| CACCCTCTCCTAGTTGAGGT+AGG | - | chr2_2:54672397-54672416 | Msa0258360:CDS | 55.0% | |
| TGGAGCGTAGAAGCAGGGCA+AGG | + | chr2_2:54667894-54667913 | None:intergenic | 60.0% | |
| GTGGCTGGAGCGTAGAAGCA+GGG | + | chr2_2:54667899-54667918 | None:intergenic | 60.0% | |
| CTACGCTCCAGCCACGCTAA+TGG | - | chr2_2:54667904-54667923 | Msa0258360:CDS | 60.0% | |
| AGCTACGCCATTAGCGTGGC+TGG | + | chr2_2:54667914-54667933 | None:intergenic | 60.0% | |
| TTCATGGCCTGCTACGCTCC+AGG | - | chr2_2:54667983-54668002 | Msa0258360:intron | 60.0% | |
| TAGCGTACCTGGAGCGTAGC+AGG | + | chr2_2:54667993-54668012 | None:intergenic | 60.0% | |
| GTGCTCCAGATTCACGCTCC+AGG | - | chr2_2:54668079-54668098 | Msa0258360:CDS | 60.0% | |
| CGTAGGACACGCTAATGGCG+TGG | - | chr2_2:54668155-54668174 | Msa0258360:intron | 60.0% | |
| CGCTGACGTGACACCCTAAG+TGG | - | chr2_2:54670361-54670380 | Msa0258360:intron | 60.0% | |
| !! | GTAGCAGTTTTGGCCCCCCA+AGG | + | chr2_2:54670420-54670439 | None:intergenic | 60.0% |
| GAAGCAGGGCAAGGCCAACG+TGG | + | chr2_2:54667885-54667904 | None:intergenic | 65.0% | |
| CGTGGCTGGAGCGTAGAAGC+AGG | + | chr2_2:54667900-54667919 | None:intergenic | 65.0% | |
| GCGCACCTGGAGCGTGAATC+TGG | + | chr2_2:54668087-54668106 | None:intergenic | 65.0% | |
| TCACGCTCCAGGTGCGCCAT+TGG | - | chr2_2:54668090-54668109 | Msa0258360:CDS | 65.0% | |
| AGGTACGCCAATGGCGCACC+TGG | + | chr2_2:54668100-54668119 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 54667871 | 54673441 | 54667871 | ID=Msa0258360;Name=Msa0258360 |
| chr2_2 | mRNA | 54667871 | 54673441 | 54667871 | ID=Msa0258360-mRNA-1;Parent=Msa0258360;Name=Msa0258360-mRNA-1;_AED=0.20;_eAED=0.27;_QI=0|0|0|0.92|1|1|14|0|690 |
| chr2_2 | exon | 54673212 | 54673441 | 54673212 | ID=Msa0258360-mRNA-1:exon:16459;Parent=Msa0258360-mRNA-1 |
| chr2_2 | exon | 54672152 | 54672782 | 54672152 | ID=Msa0258360-mRNA-1:exon:16458;Parent=Msa0258360-mRNA-1 |
| chr2_2 | exon | 54671981 | 54672060 | 54671981 | ID=Msa0258360-mRNA-1:exon:16457;Parent=Msa0258360-mRNA-1 |
| chr2_2 | exon | 54671788 | 54671872 | 54671788 | ID=Msa0258360-mRNA-1:exon:16456;Parent=Msa0258360-mRNA-1 |
| chr2_2 | exon | 54671599 | 54671690 | 54671599 | ID=Msa0258360-mRNA-1:exon:16455;Parent=Msa0258360-mRNA-1 |
| chr2_2 | exon | 54671453 | 54671521 | 54671453 | ID=Msa0258360-mRNA-1:exon:16454;Parent=Msa0258360-mRNA-1 |
| chr2_2 | exon | 54671332 | 54671368 | 54671332 | ID=Msa0258360-mRNA-1:exon:16453;Parent=Msa0258360-mRNA-1 |
| chr2_2 | exon | 54671177 | 54671259 | 54671177 | ID=Msa0258360-mRNA-1:exon:16452;Parent=Msa0258360-mRNA-1 |
| chr2_2 | exon | 54669823 | 54670215 | 54669823 | ID=Msa0258360-mRNA-1:exon:16451;Parent=Msa0258360-mRNA-1 |
| chr2_2 | exon | 54668898 | 54668934 | 54668898 | ID=Msa0258360-mRNA-1:exon:16450;Parent=Msa0258360-mRNA-1 |
| chr2_2 | exon | 54668710 | 54668767 | 54668710 | ID=Msa0258360-mRNA-1:exon:16449;Parent=Msa0258360-mRNA-1 |
| chr2_2 | exon | 54668227 | 54668315 | 54668227 | ID=Msa0258360-mRNA-1:exon:16448;Parent=Msa0258360-mRNA-1 |
| chr2_2 | exon | 54668074 | 54668139 | 54668074 | ID=Msa0258360-mRNA-1:exon:16447;Parent=Msa0258360-mRNA-1 |
| chr2_2 | exon | 54667871 | 54667993 | 54667871 | ID=Msa0258360-mRNA-1:exon:16446;Parent=Msa0258360-mRNA-1 |
| chr2_2 | CDS | 54673212 | 54673441 | 54673212 | ID=Msa0258360-mRNA-1:cds;Parent=Msa0258360-mRNA-1 |
| chr2_2 | CDS | 54672152 | 54672782 | 54672152 | ID=Msa0258360-mRNA-1:cds;Parent=Msa0258360-mRNA-1 |
| chr2_2 | CDS | 54671981 | 54672060 | 54671981 | ID=Msa0258360-mRNA-1:cds;Parent=Msa0258360-mRNA-1 |
| chr2_2 | CDS | 54671788 | 54671872 | 54671788 | ID=Msa0258360-mRNA-1:cds;Parent=Msa0258360-mRNA-1 |
| chr2_2 | CDS | 54671599 | 54671690 | 54671599 | ID=Msa0258360-mRNA-1:cds;Parent=Msa0258360-mRNA-1 |
| chr2_2 | CDS | 54671453 | 54671521 | 54671453 | ID=Msa0258360-mRNA-1:cds;Parent=Msa0258360-mRNA-1 |
| chr2_2 | CDS | 54671332 | 54671368 | 54671332 | ID=Msa0258360-mRNA-1:cds;Parent=Msa0258360-mRNA-1 |
| chr2_2 | CDS | 54671177 | 54671259 | 54671177 | ID=Msa0258360-mRNA-1:cds;Parent=Msa0258360-mRNA-1 |
| chr2_2 | CDS | 54669823 | 54670215 | 54669823 | ID=Msa0258360-mRNA-1:cds;Parent=Msa0258360-mRNA-1 |
| chr2_2 | CDS | 54668898 | 54668934 | 54668898 | ID=Msa0258360-mRNA-1:cds;Parent=Msa0258360-mRNA-1 |
| chr2_2 | CDS | 54668710 | 54668767 | 54668710 | ID=Msa0258360-mRNA-1:cds;Parent=Msa0258360-mRNA-1 |
| chr2_2 | CDS | 54668227 | 54668315 | 54668227 | ID=Msa0258360-mRNA-1:cds;Parent=Msa0258360-mRNA-1 |
| chr2_2 | CDS | 54668074 | 54668139 | 54668074 | ID=Msa0258360-mRNA-1:cds;Parent=Msa0258360-mRNA-1 |
| chr2_2 | CDS | 54667871 | 54667993 | 54667871 | ID=Msa0258360-mRNA-1:cds;Parent=Msa0258360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
