AlfalfaGEDB | Msa0297700

M. sativa cultivar zhongmu-4 / Msa0297700

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0297700	XP_004487732.1	49.003	602	163	9	293	812	302	841	5.47e-158	497

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0297700	sp\|Q9SJQ6\|ROS1_ARATH	36.292	383	179	9	492	812	815	1194	3.74e-55	210

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0297700	A0A1S2XGM6	49.003	602	163	9	293	812	302	841	2.61e-158	497

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0218750	Msa0297700	0.851683	7.565255e-61	-8.615850e-47
Msa0258360	Msa0297700	0.836656	8.236477e-57	-8.615850e-47
Msa0297700	Msa0335750	0.873049	1.985916e-67	-8.615850e-47
Msa0297700	Msa0492740	0.814771	1.300241e-51	-8.615850e-47
Msa0297700	Msa0641020	0.809074	2.265144e-50	-8.615850e-47
Msa0297700	Msa0883430	0.822326	2.515072e-53	-8.615850e-47
Msa0297700	Msa0883660	0.815124	1.085789e-51	-8.615850e-47
Msa0297700	Msa1008340	0.828054	1.112479e-54	-8.615850e-47
Msa0297700	Msa1049950	0.804938	1.699045e-49	-8.615850e-47
Msa0297700	Msa1139240	0.819390	1.191243e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0297700	MtrunA17_Chr2g0279191	45.760	625	185	15	157	692	1	560	7.24e-148	446
Msa0297700	MtrunA17_Chr2g0279191	51.429	105	46	3	35	136	1	103	3.38e-20	95.5
Msa0297700	MtrunA17_Chr5g0446571	46.572	423	131	6	287	692	95	439	2.30e-103	328
Msa0297700	MtrunA17_Chr2g0320931	91.870	123	10	0	347	469	1	123	1.07e-71	230
Msa0297700	MtrunA17_Chr1g0198151	37.135	342	144	10	534	812	1256	1589	2.57e-49	189
Msa0297700	MtrunA17_Chr1g0198151	38.889	144	60	5	289	406	744	885	5.29e-12	70.1
Msa0297700	MtrunA17_Chr7g0265771	52.410	166	73	2	533	692	1180	1345	5.90e-49	188
Msa0297700	MtrunA17_Chr1g0179341	49.724	181	84	3	519	692	1596	1776	2.67e-48	186

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0297700	AT2G36490.1	36.292	383	179	9	492	812	815	1194	3.80e-56	210
Msa0297700	AT2G36490.1	35.023	217	105	8	300	487	522	731	2.84e-11	68.2
Msa0297700	AT5G04560.1	34.203	345	160	7	533	812	1191	1533	2.54e-48	186
Msa0297700	AT5G04560.1	41.096	146	60	5	277	398	666	809	3.01e-15	81.3
Msa0297700	AT5G04560.3	34.203	345	160	7	533	812	1191	1533	2.54e-48	186
Msa0297700	AT5G04560.3	41.096	146	60	5	277	398	666	809	3.01e-15	81.3
Msa0297700	AT5G04560.2	34.203	345	160	7	533	812	1449	1791	2.63e-48	186
Msa0297700	AT5G04560.2	41.096	146	60	5	277	398	924	1067	2.85e-15	81.3
Msa0297700	AT4G34060.2	45.810	179	94	2	517	692	485	663	3.60e-43	169
Msa0297700	AT4G34060.4	45.810	179	94	2	517	692	426	604	3.77e-43	169

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Find 123 sgRNAs with CRISPR-Local

Find 440 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAATATGTGCATCATG+TGG	0.659170	2_3:+51463275	None:intergenic
AAACCCAAAAGTTCTACGAG+TGG	0.694156	2_3:-51466865	Msa0297700:CDS
AAAGAATGATCGAGCACTTT+TGG	0.274579	2_3:+51463350	None:intergenic
AAATGCACCCTGCTCAACCT+TGG	0.494954	2_3:+51466978	None:intergenic
AAATGCACCCTGCTCAACCT+TGG	0.494954	2_3:+51469542	None:intergenic
AACAAGTTAATGGACAAATA+TGG	0.375942	2_3:-51465361	Msa0297700:CDS
AACAGTAAATGTTGATACAT+TGG	0.519889	2_3:+51463532	None:intergenic
AACCCAAAAGTTCTACGAGT+GGG	0.616360	2_3:-51466864	Msa0297700:CDS
AAGAAGCATCATCTTGAAAG+TGG	0.518008	2_3:-51467135	Msa0297700:CDS
AAGAAGCATCATCTTGAAAG+TGG	0.518008	2_3:-51469699	Msa0297700:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGATATATCATCCTAAAG+TGG	-	chr2_3:51463369-51463388	Msa0297700:CDS	30.0%
CGACAATTATTCATTGATGA+TGG	-	chr2_3:51463508-51463527	Msa0297700:CDS	30.0%
GGAAAAATTCAATGATTCCA+AGG	-	chr2_3:51463555-51463574	Msa0297700:CDS	30.0%
TTGTTTCCCATTTCAACATA+GGG	+	chr2_3:51463667-51463686	None:intergenic	30.0%
TTTGTTTCCCATTTCAACAT+AGG	+	chr2_3:51463668-51463687	None:intergenic	30.0%
TAAAATAAATCTTCACAGCC+GGG	+	chr2_3:51463826-51463845	None:intergenic	30.0%
CTAAAATAAATCTTCACAGC+CGG	+	chr2_3:51463827-51463846	None:intergenic	30.0%
TTATGAGATTCTTACTACTC+AGG	+	chr2_3:51463952-51463971	None:intergenic	30.0%
TGCCAAATATCTGTAACATT+AGG	-	chr2_3:51464013-51464032	Msa0297700:intron	30.0%
AGCCTAATGTTACAGATATT+TGG	+	chr2_3:51464018-51464037	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	51463247	51469889	51463247	ID=Msa0297700;Name=Msa0297700
chr2_3	mRNA	51463247	51469889	51463247	ID=Msa0297700-mRNA-1;Parent=Msa0297700;Name=Msa0297700-mRNA-1;_AED=0.10;_eAED=0.11;_QI=0\|0\|0\|1\|1\|1\|9\|0\|816
chr2_3	exon	51469490	51469889	51469490	ID=Msa0297700-mRNA-1:exon:16374;Parent=Msa0297700-mRNA-1
chr2_3	exon	51466659	51467291	51466659	ID=Msa0297700-mRNA-1:exon:16373;Parent=Msa0297700-mRNA-1
chr2_3	exon	51466193	51466283	51466193	ID=Msa0297700-mRNA-1:exon:16372;Parent=Msa0297700-mRNA-1
chr2_3	exon	51465489	51466113	51465489	ID=Msa0297700-mRNA-1:exon:16371;Parent=Msa0297700-mRNA-1
chr2_3	exon	51465313	51465392	51465313	ID=Msa0297700-mRNA-1:exon:16370;Parent=Msa0297700-mRNA-1
chr2_3	exon	51465120	51465204	51465120	ID=Msa0297700-mRNA-1:exon:16369;Parent=Msa0297700-mRNA-1
chr2_3	exon	51464931	51465022	51464931	ID=Msa0297700-mRNA-1:exon:16368;Parent=Msa0297700-mRNA-1
chr2_3	exon	51464772	51464840	51464772	ID=Msa0297700-mRNA-1:exon:16367;Parent=Msa0297700-mRNA-1
chr2_3	exon	51463247	51463622	51463247	ID=Msa0297700-mRNA-1:exon:16366;Parent=Msa0297700-mRNA-1
chr2_3	CDS	51469490	51469889	51469490	ID=Msa0297700-mRNA-1:cds;Parent=Msa0297700-mRNA-1
chr2_3	CDS	51466659	51467291	51466659	ID=Msa0297700-mRNA-1:cds;Parent=Msa0297700-mRNA-1
chr2_3	CDS	51466193	51466283	51466193	ID=Msa0297700-mRNA-1:cds;Parent=Msa0297700-mRNA-1
chr2_3	CDS	51465489	51466113	51465489	ID=Msa0297700-mRNA-1:cds;Parent=Msa0297700-mRNA-1
chr2_3	CDS	51465313	51465392	51465313	ID=Msa0297700-mRNA-1:cds;Parent=Msa0297700-mRNA-1
chr2_3	CDS	51465120	51465204	51465120	ID=Msa0297700-mRNA-1:cds;Parent=Msa0297700-mRNA-1
chr2_3	CDS	51464931	51465022	51464931	ID=Msa0297700-mRNA-1:cds;Parent=Msa0297700-mRNA-1
chr2_3	CDS	51464772	51464840	51464772	ID=Msa0297700-mRNA-1:cds;Parent=Msa0297700-mRNA-1
chr2_3	CDS	51463247	51463622	51463247	ID=Msa0297700-mRNA-1:cds;Parent=Msa0297700-mRNA-1

Gene Sequence

>Msa0297700

ATGGCTCTAACCTTTTACGGTTGTGCATGTGAAGATGTTGAATTATCTCCTCCATCGTTTTCAAAGAAAAGGAGGAATAACCAAAAGGATGTTAATGATGAATTGCGAAAAACACCTACAAGGAAGATATATCATCCTAAAGTGGTGTCTGAAAATCCCAACAAAATAAAGAAGCATCATCTTGAAAGTGGTAGCACTCCAAAACTTGCAACACCGAAGCAGCATAGTGAAAGTTATTTCAAAAAGATTCCCAAGTGTCAGCGACAATTATTCATTGATGATGGAGATTTTGGCTCTTTACCATTTTTGGAAAAATTCAATGATTCCAAGGTTGAGCAGGGTGCATTTGAGAATTCAACAATAACCAATGAATTTGATGTCGAATATAATTCTCTACAAAATGTTGAATTATCTCCTCCATCGTTTTCAAAGAAAAGGAGGAATAACCAAAAGGATGTTAATGATGAATTGCGAAAAACACCTACAAGGAAGATATATCATCCTAAAGTGGTGTCTGAAAATCCCAAGAAAATAAAGAAGCATCATCTTGAAAGTGGTAGCATTCCAAAACTTGAAACACCGAAGCAGCATAGTGAAAGTTATTTCAAAAAGATTCCCAAGTGTCAGCGACAATTATTCATTGATGATGGAGATTTTGGCTCTTTACCATTTTTGGAAAATTTCAATGATTCCAAGGTTGAGCAGGGTGCATTTGAGAATTCAACCATAACCAATGAATTTGATGTCGAATATAATTCTCTACAAAGTTTGGTAAAACCATTGCCCTATGTTGAAATGGGAAACAAACCCAAAAGTTCTACGAGTGGGAAAAAAAGACACGGAAAGACAAATAAGCTAAATCTCCATAAAAAACCAGGGGAGTTAGTTCTTTATGGACAACCATCCTCGAGAGTTGATGTAATACTTGATGAAGAGACATTAAGAGTATGGAATTTACTCGTTGTTGGAAGAGAACATCAAGAGAATGATGAACAAAAGCGGAGGTGTTGGGAGGAGACAAGAGAAGCCTATCGCAATATGAGATTCTTACCATGGAAAGGCTCCGTTTTAGATTCTGTGGTTGGCGTCTGCTTAACTCAAAGTGTGAGAGACTCTTCGTCAAGCAATGCATTTATGTCACTTGCTGCGAATTTCCCTGTTAAACCAGCTAGCAGGGAACAAAGCAACAATATGGATTTTTCGAACTCAAAAGTTGATACAAAGATGAACGATATAAATGTTGAAGAATTTGAAGCTGAGAAAGACATTGAAACTTCCAAAGTTGATAACAGTGGAACAATAAATAATTCATGTTTCATTGAGAGAAACTTGGACTCTTCCAAAGTTATCAAGGAAGAGATCAACAACATGGATTTTTTAGATCCTCAGTCTGATAAAAAATTGAAGGATAGAAAACTTGAAGAAATAGAAGCTCGAAAGGTCAACGAATCTTCCAAAGTTGATATCCGAAAAACTAAAAATAGTCAACCTTCCATAGAGAGAAACACAGATTCTCCTAGTAAGAAACAAACACCCAATACAAAAAAAGGTAAGAAAAAGGAGGAAAAAAATAGGGTGTTGGAAAATCAAAGACAACATTGGGATACACTAAGAAAAATCCACACCAAAAATGATCAACACATTGATCATGTGGATTCTGTTGATTGGGAAGCACTAAGAAATGAAGAACCTAGTGAAGTTGCTAAAACTATTGAATTTCGTGGTCAACAACACCTGATTACTAAAAATGGATTATTGAACAAGTTAATGGACAAATATGGCAGCACAAGTTTAGAGTGGCTAAGAGATATTCCACAAATGGAAGCAAAGGGGTATCTTATGGACATACATGGATTGGGATTGAAAAGTGTGGAATGCATAAGGCTTTTAACACTTCAACATGTTGCTTTTCAGGTGGATGTAAATGTTGGAAGAATTGTCATACGTTTGGGATGGGTCCCTCTGCAACCATTACCTGCATCAATTGAAATACATAATTTAGAGGAGTATCCAGATTCAAACAAAATTCAACAATATCTTTGGCCAAGACTATGCACTCTTGATCATCATACATTGACAAAGTTTGCCTTACCACCCAAGCCAACCACAAATCAAACAATTGTTGTGAACCAACTAGATCATGCCAATGTATCAACATTTACTGTTGAGGAGGGTAAAACATGTGAGCCTATAATTGAGCTGCCGATGTCACCTGAACTTGAAAGCATGAAATTGATTGATTTTGAAATAAGACATGATGAGGATGAAGTAGACATTGAGGATATTCTTTCAATCAACCTATGTAGCCAGCAATCATCAGACATGCCAAAAGTGCTCGATCATTCTTTTGAAGAATATCACCATGACATTAGTTCATCAACTGCTTTAGTGACACTACATCCACATGATGCACATATTATTTTACCAAAAATGAAAGTGTCAGCCGCTTAA

Protein sequence

>Msa0297700

MALTFYGCACEDVELSPPSFSKKRRNNQKDVNDELRKTPTRKIYHPKVVSENPNKIKKHHLESGSTPKLATPKQHSESYFKKIPKCQRQLFIDDGDFGSLPFLEKFNDSKVEQGAFENSTITNEFDVEYNSLQNVELSPPSFSKKRRNNQKDVNDELRKTPTRKIYHPKVVSENPKKIKKHHLESGSIPKLETPKQHSESYFKKIPKCQRQLFIDDGDFGSLPFLENFNDSKVEQGAFENSTITNEFDVEYNSLQSLVKPLPYVEMGNKPKSSTSGKKRHGKTNKLNLHKKPGELVLYGQPSSRVDVILDEETLRVWNLLVVGREHQENDEQKRRCWEETREAYRNMRFLPWKGSVLDSVVGVCLTQSVRDSSSSNAFMSLAANFPVKPASREQSNNMDFSNSKVDTKMNDINVEEFEAEKDIETSKVDNSGTINNSCFIERNLDSSKVIKEEINNMDFLDPQSDKKLKDRKLEEIEARKVNESSKVDIRKTKNSQPSIERNTDSPSKKQTPNTKKGKKKEEKNRVLENQRQHWDTLRKIHTKNDQHIDHVDSVDWEALRNEEPSEVAKTIEFRGQQHLITKNGLLNKLMDKYGSTSLEWLRDIPQMEAKGYLMDIHGLGLKSVECIRLLTLQHVAFQVDVNVGRIVIRLGWVPLQPLPASIEIHNLEEYPDSNKIQQYLWPRLCTLDHHTLTKFALPPKPTTNQTIVVNQLDHANVSTFTVEEGKTCEPIIELPMSPELESMKLIDFEIRHDEDEVDIEDILSINLCSQQSSDMPKVLDHSFEEYHHDISSSTALVTLHPHDAHIILPKMKVSAA*