Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335750 | XP_027343371.1 | 35.974 | 467 | 193 | 14 | 20 | 408 | 87 | 525 | 9.23e-56 | 221 |
| Msa0335750 | XP_027343371.1 | 45.455 | 792 | 253 | 16 | 230 | 897 | 336 | 1072 | 0.0 | 584 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335750 | sp|Q9SJQ6|ROS1_ARATH | 44.575 | 341 | 132 | 9 | 473 | 766 | 838 | 1168 | 5.26e-71 | 260 |
| Msa0335750 | sp|Q9SJQ6|ROS1_ARATH | 52.252 | 111 | 38 | 2 | 787 | 884 | 1271 | 1379 | 3.21e-24 | 113 |
| Msa0335750 | sp|Q9SJQ6|ROS1_ARATH | 36.986 | 219 | 117 | 6 | 248 | 452 | 522 | 733 | 1.75e-17 | 91.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335750 | A0A1S2XGM6 | 45.000 | 220 | 81 | 10 | 1 | 207 | 1 | 193 | 1.09e-27 | 132 |
| Msa0335750 | A0A1S2XGM6 | 55.345 | 580 | 149 | 7 | 241 | 772 | 302 | 819 | 0.0 | 573 |
| Msa0335750 | A0A1S2XGM6 | 67.188 | 128 | 27 | 2 | 785 | 899 | 897 | 1022 | 1.34e-40 | 173 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0258360 | Msa0335750 | 0.816930 | 4.290418e-52 | -8.615850e-47 |
| Msa0297700 | Msa0335750 | 0.873049 | 1.985916e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335750 | MtrunA17_Chr2g0279191 | 46.844 | 602 | 185 | 9 | 105 | 635 | 1 | 538 | 3.29e-159 | 478 |
| Msa0335750 | MtrunA17_Chr5g0446571 | 48.077 | 468 | 142 | 5 | 235 | 679 | 95 | 484 | 1.58e-130 | 401 |
| Msa0335750 | MtrunA17_Chr2g0320931 | 89.431 | 123 | 13 | 0 | 310 | 432 | 1 | 123 | 2.80e-70 | 228 |
| Msa0335750 | MtrunA17_Chr1g0179341 | 43.519 | 324 | 120 | 9 | 482 | 744 | 1596 | 1917 | 2.23e-69 | 252 |
| Msa0335750 | MtrunA17_Chr1g0179341 | 50.980 | 102 | 37 | 1 | 796 | 884 | 2048 | 2149 | 1.37e-25 | 114 |
| Msa0335750 | MtrunA17_Chr1g0179341 | 47.183 | 142 | 53 | 3 | 233 | 354 | 1130 | 1269 | 2.79e-14 | 77.8 |
| Msa0335750 | MtrunA17_Chr1g0198151 | 43.730 | 311 | 119 | 7 | 478 | 745 | 1240 | 1537 | 2.59e-68 | 249 |
| Msa0335750 | MtrunA17_Chr1g0198151 | 50.000 | 114 | 43 | 2 | 796 | 896 | 1671 | 1783 | 5.13e-26 | 115 |
| Msa0335750 | MtrunA17_Chr1g0198151 | 44.444 | 144 | 67 | 4 | 237 | 369 | 744 | 885 | 1.33e-19 | 95.1 |
| Msa0335750 | MtrunA17_Chr7g0265771 | 43.772 | 281 | 121 | 5 | 496 | 748 | 1180 | 1451 | 9.35e-67 | 244 |
| Msa0335750 | MtrunA17_Chr7g0265771 | 50.980 | 102 | 37 | 1 | 796 | 884 | 1651 | 1752 | 1.63e-24 | 110 |
| Msa0335750 | MtrunA17_Chr7g0265771 | 30.323 | 310 | 133 | 9 | 199 | 429 | 612 | 917 | 1.76e-15 | 81.6 |
| Msa0335750 | MtrunA17_Chr2g0279201 | 80.328 | 61 | 12 | 0 | 802 | 862 | 4 | 64 | 9.52e-30 | 112 |
| Msa0335750 | MtrunA17_Chr5g0446591 | 72.131 | 61 | 17 | 0 | 802 | 862 | 4 | 64 | 1.12e-26 | 103 |
| Msa0335750 | MtrunA17_Chr4g0059441 | 35.644 | 101 | 65 | 0 | 519 | 619 | 115 | 215 | 4.48e-14 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335750 | AT2G36490.1 | 44.575 | 341 | 132 | 9 | 473 | 766 | 838 | 1168 | 5.34e-72 | 260 |
| Msa0335750 | AT2G36490.1 | 52.252 | 111 | 38 | 2 | 787 | 884 | 1271 | 1379 | 3.27e-25 | 113 |
| Msa0335750 | AT2G36490.1 | 36.986 | 219 | 117 | 6 | 248 | 452 | 522 | 733 | 1.78e-18 | 91.7 |
| Msa0335750 | AT5G04560.2 | 40.584 | 308 | 138 | 4 | 491 | 753 | 1444 | 1751 | 2.98e-65 | 240 |
| Msa0335750 | AT5G04560.2 | 50.427 | 117 | 43 | 2 | 781 | 884 | 1862 | 1976 | 2.06e-26 | 117 |
| Msa0335750 | AT5G04560.2 | 39.545 | 220 | 102 | 9 | 232 | 425 | 931 | 1145 | 2.55e-21 | 101 |
| Msa0335750 | AT5G04560.1 | 40.789 | 304 | 135 | 4 | 491 | 749 | 1186 | 1489 | 3.38e-65 | 239 |
| Msa0335750 | AT5G04560.1 | 53.398 | 103 | 35 | 1 | 795 | 884 | 1616 | 1718 | 1.68e-26 | 117 |
| Msa0335750 | AT5G04560.1 | 39.545 | 220 | 102 | 9 | 232 | 425 | 673 | 887 | 2.34e-21 | 101 |
| Msa0335750 | AT5G04560.3 | 40.789 | 304 | 135 | 4 | 491 | 749 | 1186 | 1489 | 3.38e-65 | 239 |
| Msa0335750 | AT5G04560.3 | 53.398 | 103 | 35 | 1 | 795 | 884 | 1616 | 1718 | 1.68e-26 | 117 |
| Msa0335750 | AT5G04560.3 | 39.545 | 220 | 102 | 9 | 232 | 425 | 673 | 887 | 2.34e-21 | 101 |
| Msa0335750 | AT4G34060.5 | 36.667 | 360 | 170 | 10 | 480 | 797 | 289 | 632 | 2.50e-59 | 218 |
| Msa0335750 | AT4G34060.5 | 47.000 | 100 | 40 | 1 | 798 | 884 | 733 | 832 | 4.78e-18 | 90.1 |
| Msa0335750 | AT4G34060.5 | 40.000 | 140 | 81 | 2 | 214 | 350 | 111 | 250 | 5.99e-14 | 76.6 |
| Msa0335750 | AT4G34060.2 | 36.667 | 360 | 170 | 10 | 480 | 797 | 485 | 828 | 4.90e-59 | 219 |
| Msa0335750 | AT4G34060.2 | 40.000 | 140 | 81 | 2 | 214 | 350 | 307 | 446 | 4.99e-14 | 77.0 |
| Msa0335750 | AT4G34060.4 | 36.667 | 360 | 170 | 10 | 480 | 797 | 426 | 769 | 5.87e-59 | 219 |
| Msa0335750 | AT4G34060.4 | 47.000 | 100 | 40 | 1 | 798 | 884 | 870 | 969 | 4.40e-18 | 90.1 |
| Msa0335750 | AT4G34060.4 | 40.000 | 140 | 81 | 2 | 214 | 350 | 248 | 387 | 6.11e-14 | 76.6 |
| Msa0335750 | AT4G34060.1 | 36.667 | 360 | 170 | 10 | 480 | 797 | 485 | 828 | 1.21e-58 | 218 |
| Msa0335750 | AT4G34060.1 | 47.000 | 100 | 40 | 1 | 798 | 884 | 929 | 1028 | 3.53e-18 | 90.5 |
| Msa0335750 | AT4G34060.1 | 40.000 | 140 | 81 | 2 | 214 | 350 | 307 | 446 | 6.12e-14 | 77.0 |
| Msa0335750 | AT4G34060.3 | 36.667 | 360 | 170 | 10 | 480 | 797 | 546 | 889 | 1.59e-58 | 218 |
| Msa0335750 | AT4G34060.3 | 47.000 | 100 | 40 | 1 | 798 | 884 | 990 | 1089 | 3.09e-18 | 90.9 |
| Msa0335750 | AT4G34060.3 | 40.000 | 140 | 81 | 2 | 214 | 350 | 368 | 507 | 5.85e-14 | 77.0 |
| Msa0335750 | AT3G10010.1 | 45.690 | 116 | 48 | 2 | 782 | 884 | 1205 | 1318 | 9.97e-22 | 102 |
| Msa0335750 | AT3G10010.2 | 45.690 | 116 | 48 | 2 | 782 | 884 | 1205 | 1318 | 9.97e-22 | 102 |
| Msa0335750 | AT3G47830.1 | 29.630 | 135 | 89 | 1 | 519 | 647 | 128 | 262 | 2.38e-13 | 72.4 |
Find 159 sgRNAs with CRISPR-Local
Find 395 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGGGGAGTTAGTTCTTTA+TGG | 0.111084 | 2_4:+54851198 | Msa0335750:CDS |
| ATATAATTCTCTACAAAATT+TGG | 0.157486 | 2_4:+54851074 | Msa0335750:CDS |
| TTGCCCACTCGTAGAACTTT+TGG | 0.203523 | 2_4:-54851133 | None:intergenic |
| GAGAGACGCATAACATATTT+TGG | 0.239718 | 2_4:+54855978 | Msa0335750:CDS |
| TTATGTATTTCAATTGATTC+AGG | 0.266577 | 2_4:-54853056 | None:intergenic |
| AAAGAATGATCGAGCACTTT+TGG | 0.274579 | 2_4:-54854388 | None:intergenic |
| TTACCATGATTAGAATTAAT+TGG | 0.283141 | 2_4:-54848933 | None:intergenic |
| ATTGGACAGGCATTGCAATT+TGG | 0.283220 | 2_4:-54853458 | None:intergenic |
| TCTCTGCTAGCTGGTTTAAC+AGG | 0.286127 | 2_4:-54851934 | None:intergenic |
| ATGTTACAGGGAGTATCTTA+TGG | 0.322318 | 2_4:+54852805 | Msa0335750:intron |
| AATTGAAATACATAATTTAG+AGG | 0.326895 | 2_4:+54853064 | Msa0335750:CDS |
| ATTCATCATTAACATCCTTT+TGG | 0.330118 | 2_4:-54850771 | None:intergenic |
| ACCCTTGCCCTATGTTGAAA+TGG | 0.331240 | 2_4:+54851101 | Msa0335750:CDS |
| TGCTTCGGTGTTGCAAGTTT+TGG | 0.347078 | 2_4:-54850889 | None:intergenic |
| TTGGCATGTCTGATGATTGC+TGG | 0.347876 | 2_4:-54854369 | None:intergenic |
| TGAATTGCTTATAACTCCTT+TGG | 0.353596 | 2_4:-54856810 | None:intergenic |
| CAAAGCCTATATCATCTATA+TGG | 0.362343 | 2_4:+54856730 | Msa0335750:CDS |
| GGATGATATATCTTCCTTGT+AGG | 0.364488 | 2_4:-54850805 | None:intergenic |
| TGTTTACATTGATTCTTCAT+TGG | 0.369621 | 2_4:-54853476 | None:intergenic |
| AACAGTTCCAGGAACACTTC+TGG | 0.374742 | 2_4:+54855657 | Msa0335750:CDS |
| AACAAGTTAATGGACAAATA+TGG | 0.375942 | 2_4:+54852635 | Msa0335750:CDS |
| GGGACTATTGAACAAGTTAA+TGG | 0.376989 | 2_4:+54852625 | Msa0335750:intron |
| TGGAAGAATTGTCGTACGTT+TGG | 0.379229 | 2_4:+54853010 | Msa0335750:CDS |
| ATTTCAATTGATTCAGGTAA+TGG | 0.382281 | 2_4:-54853050 | None:intergenic |
| CATTATCAGATGATAACCTT+TGG | 0.386037 | 2_4:+54853330 | Msa0335750:CDS |
| AATTTCATGCTTTCAAGTTC+AGG | 0.389252 | 2_4:-54854274 | None:intergenic |
| GACATCGGCAGCTCAATTAT+AGG | 0.395244 | 2_4:-54854250 | None:intergenic |
| CCAATGTCTTGGAACATTGA+TGG | 0.395413 | 2_4:-54855943 | None:intergenic |
| CAATGATTCCAAGGTTGAGC+AGG | 0.395576 | 2_4:+54851008 | Msa0335750:CDS |
| TAACTAACCAGAAGTGTTCC+TGG | 0.397923 | 2_4:-54855664 | None:intergenic |
| GTTTGATTTGTGGTTGGCTT+GGG | 0.402865 | 2_4:-54854157 | None:intergenic |
| ATCAACGTGTTGATCACTTT+TGG | 0.403002 | 2_4:-54852403 | None:intergenic |
| GGTCAAACTCTAACAGTTCC+AGG | 0.404392 | 2_4:+54855646 | Msa0335750:CDS |
| ATCATGCGGATTCTGTTGAT+TGG | 0.405312 | 2_4:+54852424 | Msa0335750:CDS |
| AGAGCTCGATTTCCCTTGAA+TGG | 0.408891 | 2_4:+54855787 | Msa0335750:CDS |
| CACAACAATTGTTTGATTTG+TGG | 0.412817 | 2_4:-54854167 | None:intergenic |
| TGTGGTTGGCTTGGGTGGTA+AGG | 0.414017 | 2_4:-54854149 | None:intergenic |
| CTCTTTCCCATTTCAACATA+GGG | 0.414339 | 2_4:-54851108 | None:intergenic |
| TGTTTGATTTGTGGTTGGCT+TGG | 0.414940 | 2_4:-54854158 | None:intergenic |
| GAATGGAATTTACTCGTTGT+TGG | 0.415244 | 2_4:+54851270 | Msa0335750:CDS |
| TGCCACCGCAAAGCCAAGTC+AGG | 0.416874 | 2_4:+54850014 | Msa0335750:CDS |
| TTGCTTTGTTCTCTGCTAGC+TGG | 0.416896 | 2_4:-54851943 | None:intergenic |
| CATCAATGTTCCAAGACATT+GGG | 0.417475 | 2_4:+54855944 | Msa0335750:CDS |
| ATATTTGACAGCAAATTCAT+TGG | 0.424697 | 2_4:-54851055 | None:intergenic |
| TTTCATCAAAGAACCGTTGC+CGG | 0.426612 | 2_4:-54848853 | None:intergenic |
| AGAGCAATTGATACAATAAC+AGG | 0.426662 | 2_4:+54856702 | Msa0335750:CDS |
| CATATAGATGATATAGGCTT+TGG | 0.426839 | 2_4:-54856729 | None:intergenic |
| GCTAAAACTATTGAATTTCG+TGG | 0.431193 | 2_4:+54852480 | Msa0335750:CDS |
| TTGAAAGTATGTTCCATTCA+AGG | 0.432334 | 2_4:-54855800 | None:intergenic |
| TCTCTTTCCCATTTCAACAT+AGG | 0.437700 | 2_4:-54851109 | None:intergenic |
| GAATAATTGTCGCTGACACT+TGG | 0.438551 | 2_4:-54850941 | None:intergenic |
| AGTTCCACTATTATCAACTT+TGG | 0.439814 | 2_4:-54852055 | None:intergenic |
| GATGAAATGCATATAGTTCA+AGG | 0.439896 | 2_4:+54851381 | Msa0335750:CDS |
| CTCCATCGTCTTCAAAGAAA+AGG | 0.440226 | 2_4:+54850740 | Msa0335750:CDS |
| TAGCTTTCACTATGCTGCTT+CGG | 0.443924 | 2_4:-54850904 | None:intergenic |
| GGAAAAGCAAAGACAACATT+GGG | 0.448858 | 2_4:+54852359 | Msa0335750:CDS |
| CTATATTCAAACTCGATAAA+CGG | 0.449044 | 2_4:+54848897 | Msa0335750:CDS |
| AATCTTCCAAAGTTGATAAC+CGG | 0.449226 | 2_4:+54852226 | Msa0335750:CDS |
| CCCTTGCCCTATGTTGAAAT+GGG | 0.451308 | 2_4:+54851102 | Msa0335750:CDS |
| CTACCAATTAATTCTAATCA+TGG | 0.451869 | 2_4:+54848930 | Msa0335750:CDS |
| GGAAGAATTGTCGTACGTTT+GGG | 0.452585 | 2_4:+54853011 | Msa0335750:CDS |
| TGAAGAAATAGAAGCTCAAA+AGG | 0.454309 | 2_4:+54852197 | Msa0335750:CDS |
| TCTTATGGACATACATGGAT+TGG | 0.457433 | 2_4:+54852820 | Msa0335750:CDS |
| GGACTCTTCCAAAGTTATCA+AGG | 0.459023 | 2_4:+54852110 | Msa0335750:CDS |
| TTTCTCTTCCTTCTGCAAGT+TGG | 0.460077 | 2_4:-54855623 | None:intergenic |
| CTTATGGACATACATGGATT+GGG | 0.466206 | 2_4:+54852821 | Msa0335750:CDS |
| GATCTCTTCCTTGATAACTT+TGG | 0.466741 | 2_4:-54852118 | None:intergenic |
| TGGTGCCTGACTTGGCTTTG+CGG | 0.467101 | 2_4:-54850019 | None:intergenic |
| GCTAAGAGATATTCCACAAA+AGG | 0.470658 | 2_4:+54852676 | Msa0335750:CDS |
| GGAAAATTTCAATGATTCCA+AGG | 0.471614 | 2_4:+54850999 | Msa0335750:CDS |
| TGAACAAAAGCGGAGGTGTT+GGG | 0.471652 | 2_4:+54851314 | Msa0335750:CDS |
| ATGAAGAGACATTAAGAGAA+TGG | 0.472756 | 2_4:+54851253 | Msa0335750:CDS |
| ACTTCCAAAGTTGATAATAG+TGG | 0.472938 | 2_4:+54852051 | Msa0335750:CDS |
| CCATCAATGTTCCAAGACAT+TGG | 0.473499 | 2_4:+54855943 | Msa0335750:CDS |
| CGATGCCATATAGATGATAT+AGG | 0.479132 | 2_4:-54856735 | None:intergenic |
| TGATTTGTGGTTGGCTTGGG+TGG | 0.480326 | 2_4:-54854154 | None:intergenic |
| ACATTGATTCTTCATTGGAC+AGG | 0.481792 | 2_4:-54853471 | None:intergenic |
| CTGATGATTGCTGGCTACAT+AGG | 0.486069 | 2_4:-54854360 | None:intergenic |
| TGAAAAGTGTGGAATGCATA+AGG | 0.488344 | 2_4:+54852846 | Msa0335750:CDS |
| GTGGTGAATGGTGCCTGACT+TGG | 0.492931 | 2_4:-54850027 | None:intergenic |
| AAATGCACCCTGCTCAACCT+TGG | 0.494954 | 2_4:-54851016 | None:intergenic |
| AGATGACAAACCCAATGTCT+TGG | 0.502588 | 2_4:-54855954 | None:intergenic |
| ACCGTTGCCGGTAGCATTTG+CGG | 0.503590 | 2_4:-54848841 | None:intergenic |
| TCCCATTTCAACATAGGGCA+AGG | 0.504297 | 2_4:-54851103 | None:intergenic |
| GCGTGTTGTTGCGTCGCGGT+AGG | 0.505066 | 2_4:-54848819 | None:intergenic |
| ATGAACAAAAGCGGAGGTGT+TGG | 0.508904 | 2_4:+54851313 | Msa0335750:CDS |
| AAGAAGCACCATCTTGAAAG+TGG | 0.509539 | 2_4:+54850859 | Msa0335750:CDS |
| CAACACGCCGCAAATGCTAC+CGG | 0.509958 | 2_4:+54848834 | Msa0335750:CDS |
| AACATACTTTCAAGTTAATG+AGG | 0.511264 | 2_4:+54855810 | Msa0335750:CDS |
| ATACATTGGCATGATCTAGT+TGG | 0.513088 | 2_4:-54854192 | None:intergenic |
| TGAAAGTATGTTCCATTCAA+GGG | 0.513646 | 2_4:-54855799 | None:intergenic |
| GCCGCAAATGCTACCGGCAA+CGG | 0.514217 | 2_4:+54848840 | Msa0335750:CDS |
| AACAGTAAATGTTGATACAT+TGG | 0.519889 | 2_4:-54854206 | None:intergenic |
| AAAGCAGAATTAGAGAGCTC+AGG | 0.525604 | 2_4:+54855586 | Msa0335750:intron |
| CCATAAAGAACTAACTCCCC+TGG | 0.525736 | 2_4:-54851198 | None:intergenic |
| GCTTCCAGTGACTCCTTCAA+AGG | 0.526131 | 2_4:+54848794 | Msa0335750:CDS |
| TCATGCGGATTCTGTTGATT+GGG | 0.526540 | 2_4:+54852425 | Msa0335750:CDS |
| TGATAAAATCACTTTACGAT+AGG | 0.527730 | 2_4:-54851352 | None:intergenic |
| CCCATTTCAACATAGGGCAA+GGG | 0.530203 | 2_4:-54851102 | None:intergenic |
| TACTAACCGATCGTGGTGAA+TGG | 0.530726 | 2_4:-54850039 | None:intergenic |
| GGAGCCTTTGAAGGAGTCAC+TGG | 0.532993 | 2_4:-54848798 | None:intergenic |
| GAAAAGGAGGAATAACCAAA+AGG | 0.533197 | 2_4:+54850756 | Msa0335750:CDS |
| TTGGGCGTTTGTTTCTTACC+AGG | 0.534362 | 2_4:-54852294 | None:intergenic |
| TTTGTGTTTCTCTCTATCAA+AGG | 0.536097 | 2_4:-54852267 | None:intergenic |
| GTCGCGGTAGGAGCCTTTGA+AGG | 0.536278 | 2_4:-54848807 | None:intergenic |
| TGGAAAAGCAAAGACAACAT+TGG | 0.536296 | 2_4:+54852358 | Msa0335750:CDS |
| ATTAATATGTACCTTTCCAA+AGG | 0.537033 | 2_4:-54853346 | None:intergenic |
| CTCTGCTAGCTGGTTTAACA+GGG | 0.542680 | 2_4:-54851933 | None:intergenic |
| GAATTGTCGTACGTTTGGGA+TGG | 0.544408 | 2_4:+54853015 | Msa0335750:CDS |
| TGTATCAACATTTACTGTTG+AGG | 0.545389 | 2_4:+54854210 | Msa0335750:CDS |
| TTGAAGGTGGATGTAAATGT+TGG | 0.549947 | 2_4:+54852990 | Msa0335750:intron |
| ACAATTGTTTGATTTGTGGT+TGG | 0.556749 | 2_4:-54854163 | None:intergenic |
| GTGTTTCTCTCTATCAAAGG+TGG | 0.557107 | 2_4:-54852264 | None:intergenic |
| GAGAGAAACACAAATTCTCC+TGG | 0.558776 | 2_4:+54852276 | Msa0335750:CDS |
| AATTGTCGTACGTTTGGGAT+GGG | 0.558921 | 2_4:+54853016 | Msa0335750:CDS |
| CAATGTCTTGGAACATTGAT+GGG | 0.561235 | 2_4:-54855942 | None:intergenic |
| TCCGACCACAGAATCTAAAA+CGG | 0.563143 | 2_4:-54851763 | None:intergenic |
| GAGTGCTGCCACTTTCAAGA+TGG | 0.566617 | 2_4:-54850867 | None:intergenic |
| AATAATTGTCGCTGACACTT+GGG | 0.575179 | 2_4:-54850940 | None:intergenic |
| TGTGTCAACTGGGTCGCCAA+AGG | 0.579966 | 2_4:+54856794 | Msa0335750:CDS |
| ATCAACATTTACTGTTGAGG+AGG | 0.580102 | 2_4:+54854213 | Msa0335750:CDS |
| GACCCAAAAGTTCTACGAGT+GGG | 0.580288 | 2_4:+54851130 | Msa0335750:CDS |
| AATGATTCCAAGGTTGAGCA+GGG | 0.582141 | 2_4:+54851009 | Msa0335750:CDS |
| TCTAAAACGGAGCCTTTCCA+TGG | 0.586176 | 2_4:-54851750 | None:intergenic |
| GGTGTATTGGCAATAACGAC+AGG | 0.588927 | 2_4:+54856005 | Msa0335750:CDS |
| TCAGATGATAACCTTTGGAA+AGG | 0.589616 | 2_4:+54853335 | Msa0335750:CDS |
| GCAATATGAGATTCTTACCA+TGG | 0.590157 | 2_4:+54851733 | Msa0335750:CDS |
| ATGAGATTCTTACCATGGAA+AGG | 0.593356 | 2_4:+54851738 | Msa0335750:CDS |
| CTTTCAAGTTCAGGTGACAT+CGG | 0.595451 | 2_4:-54854265 | None:intergenic |
| ATTATGCGAGTTCTGTTGCA+AGG | 0.597672 | 2_4:+54853498 | Msa0335750:CDS |
| TGAGGATGAAGTAGACATTG+AGG | 0.599234 | 2_4:+54854321 | Msa0335750:CDS |
| CAGAGAACAAAGCAACAACA+TGG | 0.599933 | 2_4:+54851951 | Msa0335750:CDS |
| AAGCAAGACCAACTTGCAGA+AGG | 0.599954 | 2_4:+54855615 | Msa0335750:CDS |
| GAGTATCTTATGGACATACA+TGG | 0.601664 | 2_4:+54852815 | Msa0335750:CDS |
| CAAGGAAGAGATCAACAACA+TGG | 0.602485 | 2_4:+54852128 | Msa0335750:CDS |
| ATTACATCAACTCTCGAGGA+TGG | 0.607182 | 2_4:-54851225 | None:intergenic |
| TGATCAACACGTTGATCATG+CGG | 0.613006 | 2_4:+54852410 | Msa0335750:CDS |
| TCAACATTTACTGTTGAGGA+GGG | 0.613261 | 2_4:+54854214 | Msa0335750:CDS |
| CGACAATTATTCGTTGACGA+TGG | 0.613478 | 2_4:+54850952 | Msa0335750:CDS |
| CAGGCACCATTCACCACGAT+CGG | 0.615395 | 2_4:+54850033 | Msa0335750:CDS |
| GATTCAGGTAATGGTTGCAG+AGG | 0.615794 | 2_4:-54853041 | None:intergenic |
| TGCCTGACTTGGCTTTGCGG+TGG | 0.619186 | 2_4:-54850016 | None:intergenic |
| TAAATATTACTAACCGATCG+TGG | 0.620596 | 2_4:-54850046 | None:intergenic |
| GCTCTCATTGCAGTTCGACA+TGG | 0.623999 | 2_4:-54855769 | None:intergenic |
| TGGATTGGGATTGAAAAGTG+TGG | 0.627698 | 2_4:+54852835 | Msa0335750:CDS |
| ATTCAGGTAATGGTTGCAGA+GGG | 0.633493 | 2_4:-54853040 | None:intergenic |
| CATCGTCTTCAAAGAAAAGG+AGG | 0.633590 | 2_4:+54850743 | Msa0335750:CDS |
| AAGTATTACATCAACTCTCG+AGG | 0.647396 | 2_4:-54851229 | None:intergenic |
| GTGTGAGAGACTCTTCGTCA+AGG | 0.650313 | 2_4:+54851802 | Msa0335750:CDS |
| AACTTGCAGAAGGAAGAGAA+AGG | 0.657268 | 2_4:+54855625 | Msa0335750:CDS |
| AAGAGAATGATGAACAAAAG+CGG | 0.661812 | 2_4:+54851304 | Msa0335750:CDS |
| TATCAATTGCTCTCACACAA+AGG | 0.665083 | 2_4:-54856692 | None:intergenic |
| ATGGCAGCATGAGTTTAGAG+TGG | 0.674850 | 2_4:+54852654 | Msa0335750:CDS |
| ACAAAAGCGGAGGTGTTGGG+AGG | 0.676117 | 2_4:+54851317 | Msa0335750:CDS |
| TTTGATATGGAGTACTACGA+TGG | 0.682112 | 2_4:+54848756 | None:intergenic |
| AGACCCAAAAGTTCTACGAG+TGG | 0.684033 | 2_4:+54851129 | Msa0335750:CDS |
| TGCGGCGTGTTGTTGCGTCG+CGG | 0.689610 | 2_4:-54848823 | None:intergenic |
| AGAATGATGAACAAAAGCGG+AGG | 0.705208 | 2_4:+54851307 | Msa0335750:CDS |
| CAGTTGATGAACTAATGTCA+TGG | 0.718160 | 2_4:-54854423 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTATAATTTATTTTTT+CGG | + | chr2_4:54855067-54855086 | Msa0335750:intron | 0.0% |
| !!! | TTTTAATTTTTAAAAATTTT+TGG | + | chr2_4:54855093-54855112 | Msa0335750:intron | 0.0% |
| !! | CTAAAAATAAATAAAATAAG+AGG | - | chr2_4:54849644-54849663 | None:intergenic | 10.0% |
| !! | ATATGTTTGTAAATATATTA+AGG | + | chr2_4:54850545-54850564 | Msa0335750:intron | 10.0% |
| !!! | AAATTTATTTTCAGATTTTT+CGG | + | chr2_4:54855204-54855223 | Msa0335750:intron | 10.0% |
| !!! | TTATAATTTTCAGATTTTTT+TGG | + | chr2_4:54855234-54855253 | Msa0335750:intron | 10.0% |
| !! | AAAAAAAAATTGTTTGAAAA+TGG | - | chr2_4:54855443-54855462 | None:intergenic | 10.0% |
| !! | TTTAATTGTAAAAGAAAAAA+TGG | - | chr2_4:54855710-54855729 | None:intergenic | 10.0% |
| !!! | TTTTTTCTTTTACAATTAAA+AGG | + | chr2_4:54855710-54855729 | Msa0335750:intron | 10.0% |
| !!! | TTTTTCTTTTACAATTAAAA+GGG | + | chr2_4:54855711-54855730 | Msa0335750:intron | 10.0% |
| !!! | AAGGATTTTTTTTTTTTTTA+GGG | + | chr2_4:54856263-54856282 | Msa0335750:intron | 10.0% |
| !! | AAATTAATTAAGACAATAGA+TGG | - | chr2_4:54849199-54849218 | None:intergenic | 15.0% |
| !!! | ATTATTCATAAGCTATTTTA+AGG | + | chr2_4:54849511-54849530 | Msa0335750:intron | 15.0% |
| !!! | AGAAAATTACATATTTTATG+TGG | + | chr2_4:54849778-54849797 | Msa0335750:intron | 15.0% |
| !! | GTTTACAATATTATTTATGT+TGG | - | chr2_4:54850324-54850343 | None:intergenic | 15.0% |
| !! | TAAATAATATTGTAAACTAG+TGG | + | chr2_4:54850327-54850346 | Msa0335750:intron | 15.0% |
| !!! | ATTTTTGCAATATTGATAAA+CGG | + | chr2_4:54850672-54850691 | Msa0335750:intron | 15.0% |
| !! | ATATAATTCTCTACAAAATT+TGG | + | chr2_4:54851074-54851093 | Msa0335750:CDS | 15.0% |
| !! | CTAAGCAAAAAAATTATATT+AGG | - | chr2_4:54851508-54851527 | None:intergenic | 15.0% |
| !! | ATTAGATCAATAAAATTTGT+AGG | + | chr2_4:54851711-54851730 | Msa0335750:intron | 15.0% |
| !! | TTAGTACATTATATATTTGT+AGG | + | chr2_4:54852604-54852623 | Msa0335750:intron | 15.0% |
| !! | TAGTACATTATATATTTGTA+GGG | + | chr2_4:54852605-54852624 | Msa0335750:intron | 15.0% |
| !! | AATTGAAATACATAATTTAG+AGG | + | chr2_4:54853064-54853083 | Msa0335750:CDS | 15.0% |
| !!! | TTTTGATTTTCTTATTGAAT+AGG | - | chr2_4:54853396-54853415 | None:intergenic | 15.0% |
| !! | TTGCACTTATTTATTAAATT+TGG | + | chr2_4:54853527-54853546 | Msa0335750:intron | 15.0% |
| !! | CAATTATTGACATAAAAATA+TGG | - | chr2_4:54853952-54853971 | None:intergenic | 15.0% |
| !!! | AATTTTTCTAATGTATATGT+AGG | + | chr2_4:54854116-54854135 | Msa0335750:intron | 15.0% |
| !! | TAATATTCTTAATTCATTCA+TGG | + | chr2_4:54854582-54854601 | Msa0335750:intron | 15.0% |
| !!! | TTCAAACAATTTTTTTTTAC+AGG | + | chr2_4:54855445-54855464 | Msa0335750:intron | 15.0% |
| !!! | TCAAACAATTTTTTTTTACA+GGG | + | chr2_4:54855446-54855465 | Msa0335750:intron | 15.0% |
| !!! | TAAGAAAATATTTCTACTTT+TGG | + | chr2_4:54856198-54856217 | Msa0335750:intron | 15.0% |
| !!! | AAGAAAATATTTCTACTTTT+GGG | + | chr2_4:54856199-54856218 | Msa0335750:intron | 15.0% |
| !!! | CAAGGATTTTTTTTTTTTTT+AGG | + | chr2_4:54856262-54856281 | Msa0335750:intron | 15.0% |
| !! | TACTATTTATCTAGTATTAT+TGG | - | chr2_4:54856407-54856426 | None:intergenic | 15.0% |
| !! | TTACCATGATTAGAATTAAT+TGG | - | chr2_4:54848936-54848955 | None:intergenic | 20.0% |
| !!! | ATACCAATTAGAATTTCTTT+TGG | + | chr2_4:54849710-54849729 | Msa0335750:intron | 20.0% |
| !!! | AAATCTCTGATGTTATTTTT+AGG | - | chr2_4:54849853-54849872 | None:intergenic | 20.0% |
| !!! | TTGCTTTTTTAAGTTTCTAT+CGG | + | chr2_4:54849988-54850007 | Msa0335750:intron | 20.0% |
| !!! | ACTTTTAATATCTTTGTTCT+GGG | + | chr2_4:54850179-54850198 | Msa0335750:intron | 20.0% |
| !! | TGTATGAAAAACTATATGTT+GGG | + | chr2_4:54850220-54850239 | Msa0335750:intron | 20.0% |
| !!! | TTATTTATGTTGGTAAACTA+AGG | - | chr2_4:54850314-54850333 | None:intergenic | 20.0% |
| !!! | TTTTATCTCTTTACCATTTT+TGG | + | chr2_4:54850978-54850997 | Msa0335750:CDS | 20.0% |
| !!! | TCATTGAAATTTTCCAAAAA+TGG | - | chr2_4:54850994-54851013 | None:intergenic | 20.0% |
| !! | TTGCTTAGTAAATATATCAA+TGG | + | chr2_4:54851520-54851539 | Msa0335750:intron | 20.0% |
| !!! | TAATTTACCCAAATTTTCTT+TGG | + | chr2_4:54851846-54851865 | Msa0335750:intron | 20.0% |
| !!! | TTCTTACCTTTTTTTGTATT+GGG | - | chr2_4:54852315-54852334 | None:intergenic | 20.0% |
| !!! | TTTCTTACCTTTTTTTGTAT+TGG | - | chr2_4:54852316-54852335 | None:intergenic | 20.0% |
| !! | TACAAAAAAAGGTAAGAAAA+AGG | + | chr2_4:54852317-54852336 | Msa0335750:CDS | 20.0% |
| !! | TTTGACATATGTTATTATTG+AGG | + | chr2_4:54852572-54852591 | Msa0335750:intron | 20.0% |
| !! | AAATAAATTGTTCATGTTAC+AGG | + | chr2_4:54852792-54852811 | Msa0335750:intron | 20.0% |
| !! | AATAAATTGTTCATGTTACA+GGG | + | chr2_4:54852793-54852812 | Msa0335750:intron | 20.0% |
| !!! | TTATGTATTTCAATTGATTC+AGG | - | chr2_4:54853059-54853078 | None:intergenic | 20.0% |
| !!! | ATTTATTTGAGCTTTGTATT+AGG | + | chr2_4:54853258-54853277 | Msa0335750:intron | 20.0% |
| !!! | ACATTTTACAATTAACATGA+TGG | - | chr2_4:54853767-54853786 | None:intergenic | 20.0% |
| !! | TTATTGACATAAAAATATGG+TGG | - | chr2_4:54853949-54853968 | None:intergenic | 20.0% |
| !! | TCAAATATAAACACATGTTT+AGG | - | chr2_4:54854695-54854714 | None:intergenic | 20.0% |
| !! | TAAACATGTGTTTATATTTG+AGG | + | chr2_4:54854694-54854713 | Msa0335750:intron | 20.0% |
| !! | AAACATGTGTTTATATTTGA+GGG | + | chr2_4:54854695-54854714 | Msa0335750:intron | 20.0% |
| !! | TAAATGTACAAAACCAATTT+GGG | - | chr2_4:54854733-54854752 | None:intergenic | 20.0% |
| !! | TTAAATGTACAAAACCAATT+TGG | - | chr2_4:54854734-54854753 | None:intergenic | 20.0% |
| !!! | TTCAAACTTTTTTTTTTGAC+AGG | + | chr2_4:54855475-54855494 | Msa0335750:intron | 20.0% |
| !!! | TCAAACTTTTTTTTTTGACA+GGG | + | chr2_4:54855476-54855495 | Msa0335750:intron | 20.0% |
| !! | GTATTATTGGTAAAATTCAT+AGG | - | chr2_4:54856394-54856413 | None:intergenic | 20.0% |
| !!! | CATCATTTATTTTCAAGTAT+CGG | - | chr2_4:54856459-54856478 | None:intergenic | 20.0% |
| !!! | AATACAGAAATTCTTTTTGA+TGG | + | chr2_4:54856557-54856576 | Msa0335750:intron | 20.0% |
| !!! | ATACAGAAATTCTTTTTGAT+GGG | + | chr2_4:54856558-54856577 | Msa0335750:intron | 20.0% |
| !!! | AATGTCCATTTATATTTTAC+AGG | + | chr2_4:54856666-54856685 | Msa0335750:intron | 20.0% |
| ! | CTATATTCAAACTCGATAAA+CGG | + | chr2_4:54848897-54848916 | Msa0335750:CDS | 25.0% |
| ! | CTACCAATTAATTCTAATCA+TGG | + | chr2_4:54848930-54848949 | Msa0335750:CDS | 25.0% |
| ! | AAATTGAATTTCTTGCAGTT+GGG | + | chr2_4:54848976-54848995 | Msa0335750:intron | 25.0% |
| ! | CAATCTCAATCTAACAAATA+TGG | - | chr2_4:54849031-54849050 | None:intergenic | 25.0% |
| !! | TGTCTTGTTCAAAAAGTAAA+CGG | - | chr2_4:54849255-54849274 | None:intergenic | 25.0% |
| !!! | GATCACAATATCGTTTTTTA+TGG | + | chr2_4:54849304-54849323 | Msa0335750:intron | 25.0% |
| ! | TCATTCTTCATAAACTCAAA+TGG | - | chr2_4:54849410-54849429 | None:intergenic | 25.0% |
| !! | TTAAGTAAAAGACCGTTTTA+CGG | - | chr2_4:54849436-54849455 | None:intergenic | 25.0% |
| ! | AAAAATAAGTCAAACCAAAC+GGG | - | chr2_4:54849461-54849480 | None:intergenic | 25.0% |
| ! | CAAAAATAAGTCAAACCAAA+CGG | - | chr2_4:54849462-54849481 | None:intergenic | 25.0% |
| ! | TAAAAACAAGCTAATCCAAA+TGG | + | chr2_4:54849612-54849631 | Msa0335750:intron | 25.0% |
| ! | AAAAACAAGCTAATCCAAAT+GGG | + | chr2_4:54849613-54849632 | Msa0335750:intron | 25.0% |
| !!! | ATTTTTAGGTACTTTGTTTG+CGG | - | chr2_4:54849839-54849858 | None:intergenic | 25.0% |
| !!! | ATTTTCTAAGAAATTAGCGA+CGG | + | chr2_4:54849869-54849888 | Msa0335750:intron | 25.0% |
| ! | AAGACAATGATAGTAGTAAT+CGG | - | chr2_4:54849914-54849933 | None:intergenic | 25.0% |
| !! | GACTTTTAATATCTTTGTTC+TGG | + | chr2_4:54850178-54850197 | Msa0335750:intron | 25.0% |
| ! | GTGTATGAAAAACTATATGT+TGG | + | chr2_4:54850219-54850238 | Msa0335750:intron | 25.0% |
| ! | TGAGTTTCTAATTTGAATAC+TGG | + | chr2_4:54850355-54850374 | Msa0335750:intron | 25.0% |
| ! | TTCTAATTTGAATACTGGAA+TGG | + | chr2_4:54850360-54850379 | Msa0335750:intron | 25.0% |
| ! | ATTCAAACATAGAACACAAT+AGG | + | chr2_4:54850441-54850460 | Msa0335750:intron | 25.0% |
| !! | ATAGATAAGAAAGTACATGA+AGG | - | chr2_4:54850487-54850506 | None:intergenic | 25.0% |
| ! | TGTACTTTCTTATCTATTCA+AGG | + | chr2_4:54850490-54850509 | Msa0335750:intron | 25.0% |
| ! | ACAAGTTACTAAGTCTAAAT+TGG | - | chr2_4:54850599-54850618 | None:intergenic | 25.0% |
| !! | ATTCATCATTAACATCCTTT+TGG | - | chr2_4:54850774-54850793 | None:intergenic | 25.0% |
| !!! | ATGGTGCTTCTTTATTTTAT+GGG | - | chr2_4:54850851-54850870 | None:intergenic | 25.0% |
| ! | ATATTTGACAGCAAATTCAT+TGG | - | chr2_4:54851058-54851077 | None:intergenic | 25.0% |
| ! | TTAAATCTCCATAAAAAACC+AGG | + | chr2_4:54851180-54851199 | Msa0335750:CDS | 25.0% |
| ! | TAAATCTCCATAAAAAACCA+GGG | + | chr2_4:54851181-54851200 | Msa0335750:CDS | 25.0% |
| ! | TGATAAAATCACTTTACGAT+AGG | - | chr2_4:54851355-54851374 | None:intergenic | 25.0% |
| ! | TCATATTATACCATCAATGT+TGG | + | chr2_4:54851426-54851445 | Msa0335750:intron | 25.0% |
| ! | CATATTATACCATCAATGTT+GGG | + | chr2_4:54851427-54851446 | Msa0335750:intron | 25.0% |
| ! | TTCAAAGCCAAAGAAAATTT+GGG | - | chr2_4:54851856-54851875 | None:intergenic | 25.0% |
| ! | ATTCAAAGCCAAAGAAAATT+TGG | - | chr2_4:54851857-54851876 | None:intergenic | 25.0% |
| ! | ATGTTTCATTGAGAAAAACT+TGG | + | chr2_4:54852089-54852108 | Msa0335750:CDS | 25.0% |
| !!! | TTCAATTTTTTATCGGATTG+AGG | - | chr2_4:54852165-54852184 | None:intergenic | 25.0% |
| ! | TCAATCCGATAAAAAATTGA+AGG | + | chr2_4:54852164-54852183 | Msa0335750:CDS | 25.0% |
| !!! | TCGATCCTTCAATTTTTTAT+CGG | - | chr2_4:54852172-54852191 | None:intergenic | 25.0% |
| ! | AAAAAAAGGTAAGAAAAAGG+AGG | + | chr2_4:54852320-54852339 | Msa0335750:CDS | 25.0% |
| ! | AGAAAAAGGAGGAAAAAAAT+AGG | + | chr2_4:54852331-54852350 | Msa0335750:CDS | 25.0% |
| !! | AACAAGTTAATGGACAAATA+TGG | + | chr2_4:54852635-54852654 | Msa0335750:CDS | 25.0% |
| ! | TTTCAACATCTAAGTTTCTT+TGG | + | chr2_4:54852711-54852730 | Msa0335750:intron | 25.0% |
| !! | ATTTCAATTGATTCAGGTAA+TGG | - | chr2_4:54853053-54853072 | None:intergenic | 25.0% |
| !!! | TGTTGAATTTTGTTTGAATC+TGG | - | chr2_4:54853173-54853192 | None:intergenic | 25.0% |
| ! | TATGATATCTTGCTTTGTAT+AGG | + | chr2_4:54853298-54853317 | Msa0335750:intron | 25.0% |
| ! | ATTAATATGTACCTTTCCAA+AGG | - | chr2_4:54853349-54853368 | None:intergenic | 25.0% |
| !!! | ATCATCTTAAATTGTTTTGC+AGG | + | chr2_4:54853415-54853434 | Msa0335750:intron | 25.0% |
| !!! | TGTTTACATTGATTCTTCAT+TGG | - | chr2_4:54853479-54853498 | None:intergenic | 25.0% |
| ! | TAAATTTGGAGAACACTTTA+TGG | + | chr2_4:54853541-54853560 | Msa0335750:intron | 25.0% |
| !! | ATCGGAAAGTTTATTTGTTT+TGG | + | chr2_4:54853659-54853678 | Msa0335750:intron | 25.0% |
| !!! | TCGGAAAGTTTATTTGTTTT+GGG | + | chr2_4:54853660-54853679 | Msa0335750:intron | 25.0% |
| !!! | TTGTATCTCAAAGTTTTTTG+CGG | - | chr2_4:54853714-54853733 | None:intergenic | 25.0% |
| !! | GTTAAACAACGTCTAAAATT+AGG | - | chr2_4:54853985-54854004 | None:intergenic | 25.0% |
| ! | GGTAACTTATGATTACATAA+AGG | - | chr2_4:54854028-54854047 | None:intergenic | 25.0% |
| ! | TGAATATGAGTATGTGTTAA+TGG | - | chr2_4:54854049-54854068 | None:intergenic | 25.0% |
| ! | ATTCATTTACCCTTTATGAT+TGG | + | chr2_4:54854064-54854083 | Msa0335750:intron | 25.0% |
| ! | ATAGCAAAACCAATCATAAA+GGG | - | chr2_4:54854076-54854095 | None:intergenic | 25.0% |
| ! | TATAGCAAAACCAATCATAA+AGG | - | chr2_4:54854077-54854096 | None:intergenic | 25.0% |
| ! | AACAGTAAATGTTGATACAT+TGG | - | chr2_4:54854209-54854228 | None:intergenic | 25.0% |
| !!! | TTTTGAAATAAGACATGATG+AGG | + | chr2_4:54854303-54854322 | Msa0335750:CDS | 25.0% |
| ! | AAAATAATATGTGCATCATG+TGG | - | chr2_4:54854466-54854485 | None:intergenic | 25.0% |
| !!! | TTGGTTTTGTACATTTAAGT+TGG | + | chr2_4:54854736-54854755 | Msa0335750:intron | 25.0% |
| ! | AGAAAGATGATAATAACTCT+TGG | - | chr2_4:54854776-54854795 | None:intergenic | 25.0% |
| !!! | AACATACTTTCAAGTTAATG+AGG | + | chr2_4:54855810-54855829 | Msa0335750:CDS | 25.0% |
| ! | TAAAACTACTACTGAATGTT+TGG | + | chr2_4:54855841-54855860 | Msa0335750:intron | 25.0% |
| !!! | TGTAACATTTCCCTTTTTTT+AGG | + | chr2_4:54855890-54855909 | Msa0335750:intron | 25.0% |
| !!! | TAATTGTCGATTTGAAGTTA+AGG | + | chr2_4:54856058-54856077 | Msa0335750:intron | 25.0% |
| !!! | AATGTTAACTTGTGTCTTTA+AGG | + | chr2_4:54856082-54856101 | Msa0335750:intron | 25.0% |
| ! | GTTGTGTACAATAACTTTAA+GGG | - | chr2_4:54856243-54856262 | None:intergenic | 25.0% |
| ! | TGTTGTGTACAATAACTTTA+AGG | - | chr2_4:54856244-54856263 | None:intergenic | 25.0% |
| ! | TAAAGTTATTGTACACAACA+AGG | + | chr2_4:54856244-54856263 | Msa0335750:intron | 25.0% |
| ! | ACAAAGTTCATTAATTTCCT+TGG | - | chr2_4:54856292-54856311 | None:intergenic | 25.0% |
| ! | TCCATGCAATAAATAGTTAA+AGG | + | chr2_4:54856338-54856357 | Msa0335750:intron | 25.0% |
| ! | ACCTTTAACTATTTATTGCA+TGG | - | chr2_4:54856342-54856361 | None:intergenic | 25.0% |
| ! | ATTCGATTAAATATCAATGC+AGG | + | chr2_4:54856519-54856538 | Msa0335750:intron | 25.0% |
| ! | GTATAAATTCCTACTTGATA+TGG | + | chr2_4:54856632-54856651 | Msa0335750:intron | 25.0% |
| ! | ATATTCTTACCATATCAAGT+AGG | - | chr2_4:54856644-54856663 | None:intergenic | 25.0% |
| ! | GGAATCCTGTAAAATATAAA+TGG | - | chr2_4:54856674-54856693 | None:intergenic | 25.0% |
| GAAATTGAATTTCTTGCAGT+TGG | + | chr2_4:54848975-54848994 | Msa0335750:intron | 30.0% | |
| AACAAGACATTAATTAGACC+TGG | + | chr2_4:54849266-54849285 | Msa0335750:intron | 30.0% | |
| AAAATAAGTCAAACCAAACG+GGG | - | chr2_4:54849460-54849479 | None:intergenic | 30.0% | |
| AATAAGAGGATTAACCCATT+TGG | - | chr2_4:54849630-54849649 | None:intergenic | 30.0% | |
| CCTCCAAAAGAAATTCTAAT+TGG | - | chr2_4:54849716-54849735 | None:intergenic | 30.0% | |
| ! | CCAATTAGAATTTCTTTTGG+AGG | + | chr2_4:54849713-54849732 | Msa0335750:intron | 30.0% |
| ! | ACTTTGTTTGCGGAAAATAT+TGG | - | chr2_4:54849829-54849848 | None:intergenic | 30.0% |
| AAAAGAGTGAGTTACGTATA+AGG | - | chr2_4:54849950-54849969 | None:intergenic | 30.0% | |
| TAAATATTACTAACCGATCG+TGG | - | chr2_4:54850049-54850068 | None:intergenic | 30.0% | |
| ! | AGTTTTTCATACACATCAGT+CGG | - | chr2_4:54850213-54850232 | None:intergenic | 30.0% |
| ATTTGAATACTGGAATGGTT+AGG | + | chr2_4:54850365-54850384 | Msa0335750:intron | 30.0% | |
| !!! | TGGTGCTTCTTTATTTTATG+GGG | - | chr2_4:54850850-54850869 | None:intergenic | 30.0% |
| !!! | GATGGTGCTTCTTTATTTTA+TGG | - | chr2_4:54850852-54850871 | None:intergenic | 30.0% |
| GGAAAATTTCAATGATTCCA+AGG | + | chr2_4:54850999-54851018 | Msa0335750:CDS | 30.0% | |
| AAATCTCCATAAAAAACCAG+GGG | + | chr2_4:54851182-54851201 | Msa0335750:CDS | 30.0% | |
| ATGAAGAGACATTAAGAGAA+TGG | + | chr2_4:54851253-54851272 | Msa0335750:CDS | 30.0% | |
| AAGAGAATGATGAACAAAAG+CGG | + | chr2_4:54851304-54851323 | Msa0335750:CDS | 30.0% | |
| GATGAAATGCATATAGTTCA+AGG | + | chr2_4:54851381-54851400 | Msa0335750:CDS | 30.0% | |
| AGTTAAAATCCCAACATTGA+TGG | - | chr2_4:54851439-54851458 | None:intergenic | 30.0% | |
| TATTAGTGACTCACAATTTG+TGG | - | chr2_4:54851484-54851503 | None:intergenic | 30.0% | |
| ATCAATGATAACTTGACACT+TGG | - | chr2_4:54851637-54851656 | None:intergenic | 30.0% | |
| !! | ACTTCCAAAGTTGATAATAG+TGG | + | chr2_4:54852051-54852070 | Msa0335750:CDS | 30.0% |
| AGTTCCACTATTATCAACTT+TGG | - | chr2_4:54852058-54852077 | None:intergenic | 30.0% | |
| TGAAGAAATAGAAGCTCAAA+AGG | + | chr2_4:54852197-54852216 | Msa0335750:CDS | 30.0% | |
| !! | AATCTTCCAAAGTTGATAAC+CGG | + | chr2_4:54852226-54852245 | Msa0335750:CDS | 30.0% |
| !!! | GTGGACTATTTTTAGTTTTC+CGG | - | chr2_4:54852248-54852267 | None:intergenic | 30.0% |
| TTTGTGTTTCTCTCTATCAA+AGG | - | chr2_4:54852270-54852289 | None:intergenic | 30.0% | |
| !!! | ATAGTTTTAGCAACTTCACT+AGG | - | chr2_4:54852471-54852490 | None:intergenic | 30.0% |
| GCTAAAACTATTGAATTTCG+TGG | + | chr2_4:54852480-54852499 | Msa0335750:CDS | 30.0% | |
| !!! | CCTGTACATTTTTAGTAATC+AGG | - | chr2_4:54852515-54852534 | None:intergenic | 30.0% |
| CCTGATTACTAAAAATGTAC+AGG | + | chr2_4:54852512-54852531 | Msa0335750:CDS | 30.0% | |
| !!! | ACACTATTTTGTTCTGAAAC+AGG | + | chr2_4:54853144-54853163 | Msa0335750:intron | 30.0% |
| CATTATCAGATGATAACCTT+TGG | + | chr2_4:54853330-54853349 | Msa0335750:CDS | 30.0% | |
| !!! | CGGAAAGTTTATTTGTTTTG+GGG | + | chr2_4:54853661-54853680 | Msa0335750:intron | 30.0% |
| !! | ACAATTGTTTGATTTGTGGT+TGG | - | chr2_4:54854166-54854185 | None:intergenic | 30.0% |
| !! | CACAACAATTGTTTGATTTG+TGG | - | chr2_4:54854170-54854189 | None:intergenic | 30.0% |
| TGTATCAACATTTACTGTTG+AGG | + | chr2_4:54854210-54854229 | Msa0335750:CDS | 30.0% | |
| !! | AATTTCATGCTTTCAAGTTC+AGG | - | chr2_4:54854277-54854296 | None:intergenic | 30.0% |
| TGACAATAGTAAGAAACACA+TGG | - | chr2_4:54854646-54854665 | None:intergenic | 30.0% | |
| GAAATCTTCATATCCCAAAT+TGG | + | chr2_4:54854717-54854736 | Msa0335750:intron | 30.0% | |
| GATAATAACTCTTGGAATGA+TGG | - | chr2_4:54854768-54854787 | None:intergenic | 30.0% | |
| ! | TGAAAGTATGTTCCATTCAA+GGG | - | chr2_4:54855802-54855821 | None:intergenic | 30.0% |
| ! | TTGAAAGTATGTTCCATTCA+AGG | - | chr2_4:54855803-54855822 | None:intergenic | 30.0% |
| TCAGCGAAAACCTAAAAAAA+GGG | - | chr2_4:54855903-54855922 | None:intergenic | 30.0% | |
| !!! | ATATTTTGGTACTGGTGTAT+TGG | + | chr2_4:54855992-54856011 | Msa0335750:CDS | 30.0% |
| !!! | TTTTTTTTTTAGGGACACCA+AGG | + | chr2_4:54856272-54856291 | Msa0335750:intron | 30.0% |
| AGAGCAATTGATACAATAAC+AGG | + | chr2_4:54856702-54856721 | Msa0335750:CDS | 30.0% | |
| CATATAGATGATATAGGCTT+TGG | - | chr2_4:54856732-54856751 | None:intergenic | 30.0% | |
| CAAAGCCTATATCATCTATA+TGG | + | chr2_4:54856730-54856749 | Msa0335750:CDS | 30.0% | |
| !! | TTTTGTTTCTCTTTCGAACT+TGG | - | chr2_4:54856773-54856792 | None:intergenic | 30.0% |
| AGAAACAAAAATGTGTCAAC+TGG | + | chr2_4:54856783-54856802 | Msa0335750:CDS | 30.0% | |
| GAAACAAAAATGTGTCAACT+GGG | + | chr2_4:54856784-54856803 | Msa0335750:CDS | 30.0% | |
| TGGTAAGCGAACAAGAATTT+CGG | + | chr2_4:54848950-54848969 | Msa0335750:intron | 35.0% | |
| GAAGAATGAGATCCGTAAAA+CGG | + | chr2_4:54849421-54849440 | Msa0335750:intron | 35.0% | |
| TGAGTTACGTATAAGGAGAT+GGG | - | chr2_4:54849943-54849962 | None:intergenic | 35.0% | |
| ! | TTTTTCATACACATCAGTCG+GGG | - | chr2_4:54850211-54850230 | None:intergenic | 35.0% |
| ! | GTTTTTCATACACATCAGTC+GGG | - | chr2_4:54850212-54850231 | None:intergenic | 35.0% |
| GATGAGTGAGACTCATTTAA+AGG | - | chr2_4:54850256-54850275 | None:intergenic | 35.0% | |
| AGGTATCACATACATAACTG+CGG | - | chr2_4:54850294-54850313 | None:intergenic | 35.0% | |
| CAAACATAGAACACAATAGG+AGG | + | chr2_4:54850444-54850463 | Msa0335750:intron | 35.0% | |
| GAAAAGGAGGAATAACCAAA+AGG | + | chr2_4:54850756-54850775 | Msa0335750:CDS | 35.0% | |
| AATTGCGAAAAACACCTACA+AGG | + | chr2_4:54850791-54850810 | Msa0335750:CDS | 35.0% | |
| GGATGATATATCTTCCTTGT+AGG | - | chr2_4:54850808-54850827 | None:intergenic | 35.0% | |
| ! | GGATTTTCAGACACTACTTT+AGG | - | chr2_4:54850829-54850848 | None:intergenic | 35.0% |
| AATAATTGTCGCTGACACTT+GGG | - | chr2_4:54850943-54850962 | None:intergenic | 35.0% | |
| CTCTTTCCCATTTCAACATA+GGG | - | chr2_4:54851111-54851130 | None:intergenic | 35.0% | |
| TCTCTTTCCCATTTCAACAT+AGG | - | chr2_4:54851112-54851131 | None:intergenic | 35.0% | |
| AAGTATTACATCAACTCTCG+AGG | - | chr2_4:54851232-54851251 | None:intergenic | 35.0% | |
| GAATGGAATTTACTCGTTGT+TGG | + | chr2_4:54851270-54851289 | Msa0335750:CDS | 35.0% | |
| GCAATATGAGATTCTTACCA+TGG | + | chr2_4:54851733-54851752 | Msa0335750:CDS | 35.0% | |
| ATGAGATTCTTACCATGGAA+AGG | + | chr2_4:54851738-54851757 | Msa0335750:CDS | 35.0% | |
| ! | GATCTCTTCCTTGATAACTT+TGG | - | chr2_4:54852121-54852140 | None:intergenic | 35.0% |
| ! | AGTTTTCCGGTTATCAACTT+TGG | - | chr2_4:54852235-54852254 | None:intergenic | 35.0% |
| CAAACGCCCAATACAAAAAA+AGG | + | chr2_4:54852306-54852325 | Msa0335750:CDS | 35.0% | |
| GGAGGAAAAAAATAGGTTGT+TGG | + | chr2_4:54852338-54852357 | Msa0335750:CDS | 35.0% | |
| TGGAAAAGCAAAGACAACAT+TGG | + | chr2_4:54852358-54852377 | Msa0335750:CDS | 35.0% | |
| GGAAAAGCAAAGACAACATT+GGG | + | chr2_4:54852359-54852378 | Msa0335750:CDS | 35.0% | |
| !! | ATCAACGTGTTGATCACTTT+TGG | - | chr2_4:54852406-54852425 | None:intergenic | 35.0% |
| GGGACTATTGAACAAGTTAA+TGG | + | chr2_4:54852625-54852644 | Msa0335750:intron | 35.0% | |
| GCTAAGAGATATTCCACAAA+AGG | + | chr2_4:54852676-54852695 | Msa0335750:CDS | 35.0% | |
| ! | ACTTACTTTGCTTCCTTTTG+TGG | - | chr2_4:54852692-54852711 | None:intergenic | 35.0% |
| ATTAGACAAACTCACGTTGA+TGG | - | chr2_4:54852771-54852790 | None:intergenic | 35.0% | |
| !! | ATGTTACAGGGAGTATCTTA+TGG | + | chr2_4:54852805-54852824 | Msa0335750:intron | 35.0% |
| GAGTATCTTATGGACATACA+TGG | + | chr2_4:54852815-54852834 | Msa0335750:CDS | 35.0% | |
| TCTTATGGACATACATGGAT+TGG | + | chr2_4:54852820-54852839 | Msa0335750:CDS | 35.0% | |
| CTTATGGACATACATGGATT+GGG | + | chr2_4:54852821-54852840 | Msa0335750:CDS | 35.0% | |
| ! | TGAAAAGTGTGGAATGCATA+AGG | + | chr2_4:54852846-54852865 | Msa0335750:CDS | 35.0% |
| !!! | ACTTCAACATGTTGCTTTTC+CGG | + | chr2_4:54852877-54852896 | Msa0335750:CDS | 35.0% |
| ! | AAAGTATTTGCCACTGTTGA+AGG | + | chr2_4:54852974-54852993 | Msa0335750:intron | 35.0% |
| TTGAAGGTGGATGTAAATGT+TGG | + | chr2_4:54852990-54853009 | Msa0335750:intron | 35.0% | |
| ! | TCAGATGATAACCTTTGGAA+AGG | + | chr2_4:54853335-54853354 | Msa0335750:CDS | 35.0% |
| !! | ACATTGATTCTTCATTGGAC+AGG | - | chr2_4:54853474-54853493 | None:intergenic | 35.0% |
| AACACTTTATGGCTTGATGT+TGG | + | chr2_4:54853552-54853571 | Msa0335750:intron | 35.0% | |
| !!! | ATCTCAAAGTTTTTTGCGGT+AGG | - | chr2_4:54853710-54853729 | None:intergenic | 35.0% |
| ATACATTGGCATGATCTAGT+TGG | - | chr2_4:54854195-54854214 | None:intergenic | 35.0% | |
| ATCAACATTTACTGTTGAGG+AGG | + | chr2_4:54854213-54854232 | Msa0335750:CDS | 35.0% | |
| TCAACATTTACTGTTGAGGA+GGG | + | chr2_4:54854214-54854233 | Msa0335750:CDS | 35.0% | |
| ! | AAAGAATGATCGAGCACTTT+TGG | - | chr2_4:54854391-54854410 | None:intergenic | 35.0% |
| !! | CAGTTGATGAACTAATGTCA+TGG | - | chr2_4:54854426-54854445 | None:intergenic | 35.0% |
| GGTCAAATCTCATTCAATGT+GGG | - | chr2_4:54854674-54854693 | None:intergenic | 35.0% | |
| AGGTCAAATCTCATTCAATG+TGG | - | chr2_4:54854675-54854694 | None:intergenic | 35.0% | |
| TGTACAAAGTACAATGAGCA+GGG | - | chr2_4:54854925-54854944 | None:intergenic | 35.0% | |
| TTGTACAAAGTACAATGAGC+AGG | - | chr2_4:54854926-54854945 | None:intergenic | 35.0% | |
| ATTGTTTGAAAATGGTCCCT+GGG | - | chr2_4:54855435-54855454 | None:intergenic | 35.0% | |
| AATTGTTTGAAAATGGTCCC+TGG | - | chr2_4:54855436-54855455 | None:intergenic | 35.0% | |
| GTCAGCGAAAACCTAAAAAA+AGG | - | chr2_4:54855904-54855923 | None:intergenic | 35.0% | |
| CAATGTCTTGGAACATTGAT+GGG | - | chr2_4:54855945-54855964 | None:intergenic | 35.0% | |
| CATCAATGTTCCAAGACATT+GGG | + | chr2_4:54855944-54855963 | Msa0335750:CDS | 35.0% | |
| ! | GAGAGACGCATAACATATTT+TGG | + | chr2_4:54855978-54855997 | Msa0335750:CDS | 35.0% |
| !!! | CGCATAACATATTTTGGTAC+TGG | + | chr2_4:54855984-54856003 | Msa0335750:CDS | 35.0% |
| TATCAATTGCTCTCACACAA+AGG | - | chr2_4:54856695-54856714 | None:intergenic | 35.0% | |
| CGATGCCATATAGATGATAT+AGG | - | chr2_4:54856738-54856757 | None:intergenic | 35.0% | |
| ACTACGATGGCGAACAAAAA+CGG | + | chr2_4:54848769-54848788 | Msa0335750:CDS | 40.0% | |
| TTTCATCAAAGAACCGTTGC+CGG | - | chr2_4:54848856-54848875 | None:intergenic | 40.0% | |
| GATCTCAATCAAACGACTCA+TGG | + | chr2_4:54849122-54849141 | Msa0335750:intron | 40.0% | |
| GATTGAAATTGTGTGCAGTC+GGG | - | chr2_4:54849177-54849196 | None:intergenic | 40.0% | |
| GGATTGAAATTGTGTGCAGT+CGG | - | chr2_4:54849178-54849197 | None:intergenic | 40.0% | |
| ! | TCTTTTACTTAAGCCCCGTT+TGG | + | chr2_4:54849444-54849463 | Msa0335750:intron | 40.0% |
| GTGAGTTACGTATAAGGAGA+TGG | - | chr2_4:54849944-54849963 | None:intergenic | 40.0% | |
| ! | TTTTCATACACATCAGTCGG+GGG | - | chr2_4:54850210-54850229 | None:intergenic | 40.0% |
| ATCACATACATAACTGCGGA+TGG | - | chr2_4:54850290-54850309 | None:intergenic | 40.0% | |
| CATGTTATGTTACCCCAAGT+AGG | - | chr2_4:54850420-54850439 | None:intergenic | 40.0% | |
| GGAGAAAGAGAATGAAGAGA+AGG | + | chr2_4:54850566-54850585 | Msa0335750:intron | 40.0% | |
| GAAAGAGAATGAAGAGAAGG+AGG | + | chr2_4:54850569-54850588 | Msa0335750:intron | 40.0% | |
| TTCACATGCACAACGGTAAA+AGG | - | chr2_4:54850704-54850723 | None:intergenic | 40.0% | |
| CAACATCTTCACATGCACAA+CGG | - | chr2_4:54850711-54850730 | None:intergenic | 40.0% | |
| !! | CTTTTCTTTGAAGACGATGG+AGG | - | chr2_4:54850742-54850761 | None:intergenic | 40.0% |
| CTCCATCGTCTTCAAAGAAA+AGG | + | chr2_4:54850740-54850759 | Msa0335750:CDS | 40.0% | |
| !! | CTCCTTTTCTTTGAAGACGA+TGG | - | chr2_4:54850745-54850764 | None:intergenic | 40.0% |
| CATCGTCTTCAAAGAAAAGG+AGG | + | chr2_4:54850743-54850762 | Msa0335750:CDS | 40.0% | |
| !! | AAGAAGCACCATCTTGAAAG+TGG | + | chr2_4:54850859-54850878 | Msa0335750:CDS | 40.0% |
| ! | TAGCTTTCACTATGCTGCTT+CGG | - | chr2_4:54850907-54850926 | None:intergenic | 40.0% |
| GAATAATTGTCGCTGACACT+TGG | - | chr2_4:54850944-54850963 | None:intergenic | 40.0% | |
| CGACAATTATTCGTTGACGA+TGG | + | chr2_4:54850952-54850971 | Msa0335750:CDS | 40.0% | |
| AATGATTCCAAGGTTGAGCA+GGG | + | chr2_4:54851009-54851028 | Msa0335750:CDS | 40.0% | |
| ACGAGTGGGCAAAAAATACA+AGG | + | chr2_4:54851144-54851163 | Msa0335750:CDS | 40.0% | |
| !!! | CTAACTCCCCTGGTTTTTTA+TGG | - | chr2_4:54851191-54851210 | None:intergenic | 40.0% |
| ATTACATCAACTCTCGAGGA+TGG | - | chr2_4:54851228-54851247 | None:intergenic | 40.0% | |
| AGAATGATGAACAAAAGCGG+AGG | + | chr2_4:54851307-54851326 | Msa0335750:CDS | 40.0% | |
| !! | TCCGTTTTAGATTCTGTGGT+CGG | + | chr2_4:54851762-54851781 | Msa0335750:CDS | 40.0% |
| TCCGACCACAGAATCTAAAA+CGG | - | chr2_4:54851766-54851785 | None:intergenic | 40.0% | |
| CAGAGAACAAAGCAACAACA+TGG | + | chr2_4:54851951-54851970 | Msa0335750:CDS | 40.0% | |
| GGACTCTTCCAAAGTTATCA+AGG | + | chr2_4:54852110-54852129 | Msa0335750:CDS | 40.0% | |
| CAAGGAAGAGATCAACAACA+TGG | + | chr2_4:54852128-54852147 | Msa0335750:CDS | 40.0% | |
| GTGTTTCTCTCTATCAAAGG+TGG | - | chr2_4:54852267-54852286 | None:intergenic | 40.0% | |
| GAGAGAAACACAAATTCTCC+TGG | + | chr2_4:54852276-54852295 | Msa0335750:CDS | 40.0% | |
| TGATCAACACGTTGATCATG+CGG | + | chr2_4:54852410-54852429 | Msa0335750:CDS | 40.0% | |
| ATCATGCGGATTCTGTTGAT+TGG | + | chr2_4:54852424-54852443 | Msa0335750:CDS | 40.0% | |
| ! | TCATGCGGATTCTGTTGATT+GGG | + | chr2_4:54852425-54852444 | Msa0335750:CDS | 40.0% |
| ! | TGGATTGGGATTGAAAAGTG+TGG | + | chr2_4:54852835-54852854 | Msa0335750:CDS | 40.0% |
| TTGTCTTCGCATATTCTCAC+CGG | - | chr2_4:54852899-54852918 | None:intergenic | 40.0% | |
| TTTACATCCACCTTCAACAG+TGG | - | chr2_4:54852987-54853006 | None:intergenic | 40.0% | |
| TGGAAGAATTGTCGTACGTT+TGG | + | chr2_4:54853010-54853029 | Msa0335750:CDS | 40.0% | |
| GGAAGAATTGTCGTACGTTT+GGG | + | chr2_4:54853011-54853030 | Msa0335750:CDS | 40.0% | |
| ! | AATTGTCGTACGTTTGGGAT+GGG | + | chr2_4:54853016-54853035 | Msa0335750:CDS | 40.0% |
| ! | ATTCAGGTAATGGTTGCAGA+GGG | - | chr2_4:54853043-54853062 | None:intergenic | 40.0% |
| ! | TGATCAAGAGTGCATAGTCT+TGG | - | chr2_4:54853206-54853225 | None:intergenic | 40.0% |
| ! | ATTGGACAGGCATTGCAATT+TGG | - | chr2_4:54853461-54853480 | None:intergenic | 40.0% |
| ATTATGCGAGTTCTGTTGCA+AGG | + | chr2_4:54853498-54853517 | Msa0335750:CDS | 40.0% | |
| !! | GTTTGATTTGTGGTTGGCTT+GGG | - | chr2_4:54854160-54854179 | None:intergenic | 40.0% |
| !! | TGTTTGATTTGTGGTTGGCT+TGG | - | chr2_4:54854161-54854180 | None:intergenic | 40.0% |
| !! | CTTTCAAGTTCAGGTGACAT+CGG | - | chr2_4:54854268-54854287 | None:intergenic | 40.0% |
| TGAGGATGAAGTAGACATTG+AGG | + | chr2_4:54854321-54854340 | Msa0335750:CDS | 40.0% | |
| GTACAAAGTACAATGAGCAG+GGG | - | chr2_4:54854924-54854943 | None:intergenic | 40.0% | |
| AAAGCAGAATTAGAGAGCTC+AGG | + | chr2_4:54855586-54855605 | Msa0335750:intron | 40.0% | |
| TTTCTCTTCCTTCTGCAAGT+TGG | - | chr2_4:54855626-54855645 | None:intergenic | 40.0% | |
| AACTTGCAGAAGGAAGAGAA+AGG | + | chr2_4:54855625-54855644 | Msa0335750:CDS | 40.0% | |
| !! | TAACTAACCAGAAGTGTTCC+TGG | - | chr2_4:54855667-54855686 | None:intergenic | 40.0% |
| CCAATGTCTTGGAACATTGA+TGG | - | chr2_4:54855946-54855965 | None:intergenic | 40.0% | |
| CCATCAATGTTCCAAGACAT+TGG | + | chr2_4:54855943-54855962 | Msa0335750:CDS | 40.0% | |
| AGATGACAAACCCAATGTCT+TGG | - | chr2_4:54855957-54855976 | None:intergenic | 40.0% | |
| ATCACACTCGATCATGAACC+AGG | - | chr2_4:54849287-54849306 | None:intergenic | 45.0% | |
| ! | AAATATTGGCTGCCCTATGG+CGG | - | chr2_4:54849815-54849834 | None:intergenic | 45.0% |
| ! | GGAAAATATTGGCTGCCCTA+TGG | - | chr2_4:54849818-54849837 | None:intergenic | 45.0% |
| TACTAACCGATCGTGGTGAA+TGG | - | chr2_4:54850042-54850061 | None:intergenic | 45.0% | |
| !!! | TGCTTCGGTGTTGCAAGTTT+TGG | - | chr2_4:54850892-54850911 | None:intergenic | 45.0% |
| CAATGATTCCAAGGTTGAGC+AGG | + | chr2_4:54851008-54851027 | Msa0335750:CDS | 45.0% | |
| ACCCTTGCCCTATGTTGAAA+TGG | + | chr2_4:54851101-54851120 | Msa0335750:CDS | 45.0% | |
| CCCATTTCAACATAGGGCAA+GGG | - | chr2_4:54851105-54851124 | None:intergenic | 45.0% | |
| CCCTTGCCCTATGTTGAAAT+GGG | + | chr2_4:54851102-54851121 | Msa0335750:CDS | 45.0% | |
| TCCCATTTCAACATAGGGCA+AGG | - | chr2_4:54851106-54851125 | None:intergenic | 45.0% | |
| AGACCCAAAAGTTCTACGAG+TGG | + | chr2_4:54851129-54851148 | Msa0335750:CDS | 45.0% | |
| GACCCAAAAGTTCTACGAGT+GGG | + | chr2_4:54851130-54851149 | Msa0335750:CDS | 45.0% | |
| ! | TGCCCACTCGTAGAACTTTT+GGG | - | chr2_4:54851135-54851154 | None:intergenic | 45.0% |
| ! | TTGCCCACTCGTAGAACTTT+TGG | - | chr2_4:54851136-54851155 | None:intergenic | 45.0% |
| CCATAAAGAACTAACTCCCC+TGG | - | chr2_4:54851201-54851220 | None:intergenic | 45.0% | |
| ! | CCAGGGGAGTTAGTTCTTTA+TGG | + | chr2_4:54851198-54851217 | Msa0335750:CDS | 45.0% |
| ! | ATGAACAAAAGCGGAGGTGT+TGG | + | chr2_4:54851313-54851332 | Msa0335750:CDS | 45.0% |
| !! | TGAACAAAAGCGGAGGTGTT+GGG | + | chr2_4:54851314-54851333 | Msa0335750:CDS | 45.0% |
| ! | TCTAAAACGGAGCCTTTCCA+TGG | - | chr2_4:54851753-54851772 | None:intergenic | 45.0% |
| !! | AGGCTCCGTTTTAGATTCTG+TGG | + | chr2_4:54851758-54851777 | Msa0335750:CDS | 45.0% |
| ! | CTCTGCTAGCTGGTTTAACA+GGG | - | chr2_4:54851936-54851955 | None:intergenic | 45.0% |
| ! | TCTCTGCTAGCTGGTTTAAC+AGG | - | chr2_4:54851937-54851956 | None:intergenic | 45.0% |
| ! | TTGCTTTGTTCTCTGCTAGC+TGG | - | chr2_4:54851946-54851965 | None:intergenic | 45.0% |
| ! | TTGGGCGTTTGTTTCTTACC+AGG | - | chr2_4:54852297-54852316 | None:intergenic | 45.0% |
| !! | CGTGTTGATCACTTTTGGTG+TGG | - | chr2_4:54852401-54852420 | None:intergenic | 45.0% |
| ATGGCAGCATGAGTTTAGAG+TGG | + | chr2_4:54852654-54852673 | Msa0335750:CDS | 45.0% | |
| GTATTTGCCACTGTTGAAGG+TGG | + | chr2_4:54852977-54852996 | Msa0335750:intron | 45.0% | |
| GAATTGTCGTACGTTTGGGA+TGG | + | chr2_4:54853015-54853034 | Msa0335750:CDS | 45.0% | |
| ! | GATTCAGGTAATGGTTGCAG+AGG | - | chr2_4:54853044-54853063 | None:intergenic | 45.0% |
| GACATCGGCAGCTCAATTAT+AGG | - | chr2_4:54854253-54854272 | None:intergenic | 45.0% | |
| ! | CTGATGATTGCTGGCTACAT+AGG | - | chr2_4:54854363-54854382 | None:intergenic | 45.0% |
| TTGGCATGTCTGATGATTGC+TGG | - | chr2_4:54854372-54854391 | None:intergenic | 45.0% | |
| ! | GCGGCTGACACTTTCATTTT+TGG | - | chr2_4:54854490-54854509 | None:intergenic | 45.0% |
| AAGCAAGACCAACTTGCAGA+AGG | + | chr2_4:54855615-54855634 | Msa0335750:CDS | 45.0% | |
| GGTCAAACTCTAACAGTTCC+AGG | + | chr2_4:54855646-54855665 | Msa0335750:CDS | 45.0% | |
| AACAGTTCCAGGAACACTTC+TGG | + | chr2_4:54855657-54855676 | Msa0335750:CDS | 45.0% | |
| AGAGCTCGATTTCCCTTGAA+TGG | + | chr2_4:54855787-54855806 | Msa0335750:CDS | 45.0% | |
| ! | GGTGTATTGGCAATAACGAC+AGG | + | chr2_4:54856005-54856024 | Msa0335750:CDS | 45.0% |
| !!! | ATATATATATATTGTTTTAT+CGG | + | chr2_4:54853641-54853660 | Msa0335750:intron | 5.0% |
| !!! | TTTTTAAATTTAATATTATG+TGG | + | chr2_4:54855333-54855352 | Msa0335750:intron | 5.0% |
| ACGATGGCGAACAAAAACGG+TGG | + | chr2_4:54848772-54848791 | Msa0335750:CDS | 50.0% | |
| GCTTCCAGTGACTCCTTCAA+AGG | + | chr2_4:54848794-54848813 | Msa0335750:CDS | 50.0% | |
| CGCGCGCGTATGAAATTTGT+AGG | + | chr2_4:54850134-54850153 | Msa0335750:intron | 50.0% | |
| ACCAGTCGAGCTTCCTACTT+GGG | + | chr2_4:54850404-54850423 | Msa0335750:intron | 50.0% | |
| !! | GAGTGCTGCCACTTTCAAGA+TGG | - | chr2_4:54850870-54850889 | None:intergenic | 50.0% |
| AAATGCACCCTGCTCAACCT+TGG | - | chr2_4:54851019-54851038 | None:intergenic | 50.0% | |
| GTGTGAGAGACTCTTCGTCA+AGG | + | chr2_4:54851802-54851821 | Msa0335750:CDS | 50.0% | |
| !! | TGATTTGTGGTTGGCTTGGG+TGG | - | chr2_4:54854157-54854176 | None:intergenic | 50.0% |
| CTGTGCGCTCAGTTCTTAAG+CGG | - | chr2_4:54854509-54854528 | None:intergenic | 50.0% | |
| ATATTATGTGGCACGCCACG+TGG | + | chr2_4:54855345-54855364 | Msa0335750:intron | 50.0% | |
| ! | ACTGTGCAACTTTTGCCACG+TGG | - | chr2_4:54855363-54855382 | None:intergenic | 50.0% |
| CACAGTCAACAACTGTCACG+TGG | + | chr2_4:54855377-54855396 | Msa0335750:intron | 50.0% | |
| GCTCTCATTGCAGTTCGACA+TGG | - | chr2_4:54855772-54855791 | None:intergenic | 50.0% | |
| ! | GGAGCCTTTGAAGGAGTCAC+TGG | - | chr2_4:54848801-54848820 | None:intergenic | 55.0% |
| CAACACGCCGCAAATGCTAC+CGG | + | chr2_4:54848834-54848853 | Msa0335750:CDS | 55.0% | |
| ACCGTTGCCGGTAGCATTTG+CGG | - | chr2_4:54848844-54848863 | None:intergenic | 55.0% | |
| GACAAGTAGCAGCCGCCATA+GGG | + | chr2_4:54849800-54849819 | Msa0335750:intron | 55.0% | |
| !! | TGGTGCCTGACTTGGCTTTG+CGG | - | chr2_4:54850022-54850041 | None:intergenic | 55.0% |
| GTGGTGAATGGTGCCTGACT+TGG | - | chr2_4:54850030-54850049 | None:intergenic | 55.0% | |
| CAGGCACCATTCACCACGAT+CGG | + | chr2_4:54850033-54850052 | Msa0335750:CDS | 55.0% | |
| GAAGCTCGACTGGTGAGTTG+AGG | - | chr2_4:54850398-54850417 | None:intergenic | 55.0% | |
| CACCAGTCGAGCTTCCTACT+TGG | + | chr2_4:54850403-54850422 | Msa0335750:intron | 55.0% | |
| CCAGTCGAGCTTCCTACTTG+GGG | + | chr2_4:54850405-54850424 | Msa0335750:intron | 55.0% | |
| !! | ACAAAAGCGGAGGTGTTGGG+AGG | + | chr2_4:54851317-54851336 | Msa0335750:CDS | 55.0% |
| !! | TGTGGTTGGCTTGGGTGGTA+AGG | - | chr2_4:54854152-54854171 | None:intergenic | 55.0% |
| !! | ACTGTAGCGCTGATGTGGCA+TGG | - | chr2_4:54855409-54855428 | None:intergenic | 55.0% |
| ATGCCACATCAGCGCTACAG+TGG | + | chr2_4:54855408-54855427 | Msa0335750:intron | 55.0% | |
| TGCCACATCAGCGCTACAGT+GGG | + | chr2_4:54855409-54855428 | Msa0335750:intron | 55.0% | |
| TGTGTCAACTGGGTCGCCAA+AGG | + | chr2_4:54856794-54856813 | Msa0335750:CDS | 55.0% | |
| GTCGCGGTAGGAGCCTTTGA+AGG | - | chr2_4:54848810-54848829 | None:intergenic | 60.0% | |
| GCCGCAAATGCTACCGGCAA+CGG | + | chr2_4:54848840-54848859 | Msa0335750:CDS | 60.0% | |
| GGACAAGTAGCAGCCGCCAT+AGG | + | chr2_4:54849799-54849818 | Msa0335750:intron | 60.0% | |
| TGCCACCGCAAAGCCAAGTC+AGG | + | chr2_4:54850014-54850033 | Msa0335750:CDS | 60.0% | |
| !! | TGCCTGACTTGGCTTTGCGG+TGG | - | chr2_4:54850019-54850038 | None:intergenic | 60.0% |
| CCCCAAGTAGGAAGCTCGAC+TGG | - | chr2_4:54850408-54850427 | None:intergenic | 60.0% | |
| ! | GCGTGTTGTTGCGTCGCGGT+AGG | - | chr2_4:54848822-54848841 | None:intergenic | 65.0% |
| ! | TGCGGCGTGTTGTTGCGTCG+CGG | - | chr2_4:54848826-54848845 | None:intergenic | 65.0% |
| !! | GGCCCACTGTAGCGCTGATG+TGG | - | chr2_4:54855414-54855433 | None:intergenic | 65.0% |
| ATCAGCGCTACAGTGGGCCC+AGG | + | chr2_4:54855415-54855434 | Msa0335750:intron | 65.0% | |
| TCAGCGCTACAGTGGGCCCA+GGG | + | chr2_4:54855416-54855435 | Msa0335750:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 54848762 | 54856824 | 54848762 | ID=Msa0335750;Name=Msa0335750 |
| chr2_4 | mRNA | 54848762 | 54856824 | 54848762 | ID=Msa0335750-mRNA-1;Parent=Msa0335750;Name=Msa0335750-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|0.86|1|1|15|0|906 |
| chr2_4 | exon | 54848762 | 54848951 | 54848762 | ID=Msa0335750-mRNA-1:exon:16613;Parent=Msa0335750-mRNA-1 |
| chr2_4 | exon | 54850001 | 54850054 | 54850001 | ID=Msa0335750-mRNA-1:exon:16614;Parent=Msa0335750-mRNA-1 |
| chr2_4 | exon | 54850725 | 54851402 | 54850725 | ID=Msa0335750-mRNA-1:exon:16615;Parent=Msa0335750-mRNA-1 |
| chr2_4 | exon | 54851733 | 54851823 | 54851733 | ID=Msa0335750-mRNA-1:exon:16616;Parent=Msa0335750-mRNA-1 |
| chr2_4 | exon | 54851903 | 54852533 | 54851903 | ID=Msa0335750-mRNA-1:exon:16617;Parent=Msa0335750-mRNA-1 |
| chr2_4 | exon | 54852626 | 54852705 | 54852626 | ID=Msa0335750-mRNA-1:exon:16618;Parent=Msa0335750-mRNA-1 |
| chr2_4 | exon | 54852814 | 54852898 | 54852814 | ID=Msa0335750-mRNA-1:exon:16619;Parent=Msa0335750-mRNA-1 |
| chr2_4 | exon | 54852996 | 54853087 | 54852996 | ID=Msa0335750-mRNA-1:exon:16620;Parent=Msa0335750-mRNA-1 |
| chr2_4 | exon | 54853320 | 54853356 | 54853320 | ID=Msa0335750-mRNA-1:exon:16621;Parent=Msa0335750-mRNA-1 |
| chr2_4 | exon | 54853437 | 54853519 | 54853437 | ID=Msa0335750-mRNA-1:exon:16622;Parent=Msa0335750-mRNA-1 |
| chr2_4 | exon | 54854138 | 54854433 | 54854138 | ID=Msa0335750-mRNA-1:exon:16623;Parent=Msa0335750-mRNA-1 |
| chr2_4 | exon | 54855593 | 54855678 | 54855593 | ID=Msa0335750-mRNA-1:exon:16624;Parent=Msa0335750-mRNA-1 |
| chr2_4 | exon | 54855766 | 54855831 | 54855766 | ID=Msa0335750-mRNA-1:exon:16625;Parent=Msa0335750-mRNA-1 |
| chr2_4 | exon | 54855912 | 54856026 | 54855912 | ID=Msa0335750-mRNA-1:exon:16626;Parent=Msa0335750-mRNA-1 |
| chr2_4 | exon | 54856688 | 54856824 | 54856688 | ID=Msa0335750-mRNA-1:exon:16627;Parent=Msa0335750-mRNA-1 |
| chr2_4 | CDS | 54848762 | 54848951 | 54848762 | ID=Msa0335750-mRNA-1:cds;Parent=Msa0335750-mRNA-1 |
| chr2_4 | CDS | 54850001 | 54850054 | 54850001 | ID=Msa0335750-mRNA-1:cds;Parent=Msa0335750-mRNA-1 |
| chr2_4 | CDS | 54850725 | 54851402 | 54850725 | ID=Msa0335750-mRNA-1:cds;Parent=Msa0335750-mRNA-1 |
| chr2_4 | CDS | 54851733 | 54851823 | 54851733 | ID=Msa0335750-mRNA-1:cds;Parent=Msa0335750-mRNA-1 |
| chr2_4 | CDS | 54851903 | 54852533 | 54851903 | ID=Msa0335750-mRNA-1:cds;Parent=Msa0335750-mRNA-1 |
| chr2_4 | CDS | 54852626 | 54852705 | 54852626 | ID=Msa0335750-mRNA-1:cds;Parent=Msa0335750-mRNA-1 |
| chr2_4 | CDS | 54852814 | 54852898 | 54852814 | ID=Msa0335750-mRNA-1:cds;Parent=Msa0335750-mRNA-1 |
| chr2_4 | CDS | 54852996 | 54853087 | 54852996 | ID=Msa0335750-mRNA-1:cds;Parent=Msa0335750-mRNA-1 |
| chr2_4 | CDS | 54853320 | 54853356 | 54853320 | ID=Msa0335750-mRNA-1:cds;Parent=Msa0335750-mRNA-1 |
| chr2_4 | CDS | 54853437 | 54853519 | 54853437 | ID=Msa0335750-mRNA-1:cds;Parent=Msa0335750-mRNA-1 |
| chr2_4 | CDS | 54854138 | 54854433 | 54854138 | ID=Msa0335750-mRNA-1:cds;Parent=Msa0335750-mRNA-1 |
| chr2_4 | CDS | 54855593 | 54855678 | 54855593 | ID=Msa0335750-mRNA-1:cds;Parent=Msa0335750-mRNA-1 |
| chr2_4 | CDS | 54855766 | 54855831 | 54855766 | ID=Msa0335750-mRNA-1:cds;Parent=Msa0335750-mRNA-1 |
| chr2_4 | CDS | 54855912 | 54856026 | 54855912 | ID=Msa0335750-mRNA-1:cds;Parent=Msa0335750-mRNA-1 |
| chr2_4 | CDS | 54856688 | 54856824 | 54856688 | ID=Msa0335750-mRNA-1:cds;Parent=Msa0335750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
