Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258900 | XP_003596858.1 | 93.953 | 645 | 35 | 2 | 1 | 645 | 1 | 641 | 0.0 | 1180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258900 | sp|Q66GQ2|Y5162_ARATH | 27.313 | 227 | 163 | 1 | 219 | 443 | 187 | 413 | 1.88e-18 | 93.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258900 | G7IHH1 | 93.953 | 645 | 35 | 2 | 1 | 645 | 1 | 641 | 0.0 | 1180 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0219270 | Msa0258900 | 0.970406 | 1.438441e-131 | -8.615850e-47 |
| Msa0258900 | Msa0336110 | 0.838737 | 2.407399e-57 | -8.615850e-47 |
| Msa0258900 | Msa0412790 | 0.814703 | 1.345766e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258900 | MtrunA17_Chr2g0321731 | 93.953 | 645 | 35 | 2 | 1 | 645 | 1 | 641 | 0.0 | 1180 |
| Msa0258900 | MtrunA17_Chr4g0026051 | 51.940 | 670 | 254 | 23 | 1 | 645 | 1 | 627 | 1.73e-177 | 518 |
| Msa0258900 | MtrunA17_Chr7g0266861 | 40.881 | 636 | 292 | 25 | 14 | 603 | 7 | 604 | 1.11e-110 | 347 |
| Msa0258900 | MtrunA17_Chr3g0098801 | 25.477 | 577 | 308 | 14 | 28 | 554 | 42 | 546 | 3.98e-34 | 138 |
| Msa0258900 | MtrunA17_Chr5g0397031 | 26.540 | 422 | 270 | 10 | 38 | 444 | 20 | 416 | 6.16e-33 | 134 |
| Msa0258900 | MtrunA17_Chr5g0444041 | 31.188 | 404 | 225 | 10 | 43 | 440 | 45 | 401 | 3.86e-31 | 129 |
| Msa0258900 | MtrunA17_Chr8g0347871 | 23.039 | 408 | 267 | 5 | 35 | 440 | 18 | 380 | 6.74e-26 | 112 |
| Msa0258900 | MtrunA17_Chr2g0288331 | 34.715 | 193 | 126 | 0 | 251 | 443 | 165 | 357 | 2.01e-23 | 104 |
| Msa0258900 | MtrunA17_Chr7g0275251 | 27.801 | 241 | 159 | 5 | 229 | 460 | 136 | 370 | 1.56e-18 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258900 | AT3G11590.1 | 43.243 | 518 | 262 | 15 | 14 | 514 | 15 | 517 | 5.38e-97 | 311 |
| Msa0258900 | AT3G11590.2 | 43.944 | 355 | 185 | 8 | 165 | 514 | 10 | 355 | 2.11e-66 | 225 |
| Msa0258900 | AT5G22310.1 | 32.882 | 517 | 220 | 17 | 10 | 510 | 4 | 409 | 3.39e-48 | 176 |
| Msa0258900 | AT1G50660.1 | 37.245 | 196 | 123 | 0 | 246 | 441 | 233 | 428 | 1.19e-35 | 144 |
| Msa0258900 | AT3G20350.1 | 35.841 | 226 | 133 | 3 | 253 | 476 | 215 | 430 | 5.38e-31 | 129 |
| Msa0258900 | AT5G41620.1 | 27.313 | 227 | 163 | 1 | 219 | 443 | 187 | 413 | 1.91e-19 | 93.2 |
| Msa0258900 | AT5G41620.2 | 27.313 | 227 | 163 | 1 | 219 | 443 | 28 | 254 | 1.93e-19 | 92.0 |
| Msa0258900 | AT5G41620.4 | 27.313 | 227 | 163 | 1 | 219 | 443 | 70 | 296 | 1.95e-19 | 92.4 |
| Msa0258900 | AT5G41620.3 | 27.313 | 227 | 163 | 1 | 219 | 443 | 70 | 296 | 1.95e-19 | 92.4 |
| Msa0258900 | AT1G64180.1 | 27.615 | 239 | 156 | 5 | 215 | 451 | 175 | 398 | 3.82e-16 | 82.4 |
| Msa0258900 | AT2G46250.1 | 28.218 | 202 | 126 | 3 | 218 | 419 | 152 | 334 | 3.29e-12 | 69.7 |
| Msa0258900 | AT2G46250.2 | 28.218 | 202 | 126 | 3 | 218 | 419 | 61 | 243 | 7.76e-12 | 67.8 |
Find 130 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTGCAATTTAAAATTAT+TGG | 0.090778 | 2_2:-55587988 | None:intergenic |
| CATTATCTTCCTCTAGATTT+TGG | 0.099398 | 2_2:-55590328 | None:intergenic |
| GAAAAGGGCTAAAGAGATTT+TGG | 0.212294 | 2_2:+55589968 | Msa0258900:CDS |
| TCAATCTATTGAATTGAATA+TGG | 0.239027 | 2_2:+55590391 | Msa0258900:CDS |
| ACATTCAAATACGCTATTCT+AGG | 0.244640 | 2_2:+55587786 | Msa0258900:five_prime_UTR |
| CCACTTTCTTTATCAAAATC+TGG | 0.249092 | 2_2:-55590731 | None:intergenic |
| CCACAATTCTTCTTGCGTTT+TGG | 0.249753 | 2_2:-55589516 | None:intergenic |
| CGTTAAGGGTAGGCAATAAA+TGG | 0.284091 | 2_2:-55587707 | None:intergenic |
| GTTTCAATTGATAAAGATAT+AGG | 0.289690 | 2_2:+55590482 | Msa0258900:CDS |
| TAGACTCATAATAGGCTTAT+AGG | 0.291883 | 2_2:-55590690 | None:intergenic |
| GAATTGATCGATTTGGTTGC+GGG | 0.324724 | 2_2:-55589700 | None:intergenic |
| GGGAATCTGTCAACATATAT+TGG | 0.333008 | 2_2:-55587736 | None:intergenic |
| TTTCAATTGATAAAGATATA+GGG | 0.337013 | 2_2:+55590483 | Msa0258900:CDS |
| TTGTGCACGAAGAAAATAAA+AGG | 0.339329 | 2_2:+55590835 | Msa0258900:exon |
| GAAAACTTGCTGCTACACTA+TGG | 0.343354 | 2_2:+55588480 | Msa0258900:CDS |
| GCTTTGCATTGTTCACGTTC+TGG | 0.344057 | 2_2:+55588416 | Msa0258900:CDS |
| GGAATCAATGAAAAGTAATA+AGG | 0.347161 | 2_2:+55588538 | Msa0258900:CDS |
| AAGTTCAAAGTCACCTTCTA+TGG | 0.349666 | 2_2:+55588361 | Msa0258900:CDS |
| GATTCCTTCTTGATCCTTGA+AGG | 0.350174 | 2_2:-55588521 | None:intergenic |
| TTTGTTGATCCCTGCTTTAG+AGG | 0.354642 | 2_2:+55588833 | Msa0258900:CDS |
| CATGAAGATTTCCAAAGAAA+TGG | 0.357190 | 2_2:+55589896 | Msa0258900:CDS |
| ATACTCAATATTGTTCTGAT+TGG | 0.361199 | 2_2:-55589739 | None:intergenic |
| TGGTCTCTTAGACTCATAAT+AGG | 0.362914 | 2_2:-55590698 | None:intergenic |
| AAATCTATATCTTCTTGAAA+AGG | 0.363591 | 2_2:-55588276 | None:intergenic |
| GGTTAGGAAGGTGTTTGGTT+TGG | 0.369353 | 2_2:-55587961 | None:intergenic |
| TAAAATTATTGGATGAGGTT+AGG | 0.378583 | 2_2:-55587977 | None:intergenic |
| AAAGGTCCGCGATTGCGATC+TGG | 0.378722 | 2_2:-55588072 | None:intergenic |
| CTTGAATGAATTGATCGATT+TGG | 0.380451 | 2_2:-55589707 | None:intergenic |
| CAAAATCTGGAAATGATATA+TGG | 0.386837 | 2_2:-55590718 | None:intergenic |
| AATTCGAGAAGAAGTTGAAA+AGG | 0.392229 | 2_2:+55590070 | Msa0258900:CDS |
| AGTATCAATTTGAAGAGAAA+AGG | 0.393878 | 2_2:+55590162 | Msa0258900:CDS |
| GATGAGGTTAGGAAGGTGTT+TGG | 0.401049 | 2_2:-55587966 | None:intergenic |
| GTCACAATTCAATGGCCATT+TGG | 0.401202 | 2_2:-55587595 | None:intergenic |
| AAGGTCCGCGATTGCGATCT+GGG | 0.403326 | 2_2:-55588071 | None:intergenic |
| AGCGTATTTGAATGTGTAAA+GGG | 0.404399 | 2_2:-55587778 | None:intergenic |
| TCAATGATTTAACTCCTTCA+AGG | 0.406907 | 2_2:+55588507 | Msa0258900:CDS |
| TGCTTTAGAGGCATGGATGC+TGG | 0.415340 | 2_2:+55588845 | Msa0258900:CDS |
| AGAGGAAAATGCCCTGGCTT+TGG | 0.424601 | 2_2:+55590790 | Msa0258900:CDS |
| TCTATCTTCTCCAACACCTT+TGG | 0.426390 | 2_2:-55590012 | None:intergenic |
| TAGTAATTTACCTCTGAGAA+AGG | 0.428067 | 2_2:-55588632 | None:intergenic |
| TGGCTTCTGAGAGCTTCATA+TGG | 0.428417 | 2_2:-55590139 | None:intergenic |
| AATCTATATCTTCTTGAAAA+GGG | 0.431365 | 2_2:-55588275 | None:intergenic |
| TTTCTCTTCAAATTGATACT+TGG | 0.434157 | 2_2:-55590159 | None:intergenic |
| TGATTGAGAGGGAAAGGAAA+AGG | 0.434179 | 2_2:-55587673 | None:intergenic |
| GGAAAATGCCCTGGCTTTGG+AGG | 0.439312 | 2_2:+55590793 | Msa0258900:CDS |
| CAAGTTGAGGTCAGCATCAT+GGG | 0.444075 | 2_2:-55587901 | None:intergenic |
| TGAGTTTGAGGTACATTGAT+GGG | 0.446281 | 2_2:+55590762 | Msa0258900:CDS |
| CACAAGTAGAGGAAATGAAA+AGG | 0.450688 | 2_2:+55590036 | Msa0258900:CDS |
| TTAAGTTGATTGAGAGGGAA+AGG | 0.454730 | 2_2:-55587679 | None:intergenic |
| ATTGTCGAAAGAACACGAAA+TGG | 0.459265 | 2_2:+55589944 | Msa0258900:CDS |
| AGAACACGAAATGGAGAAAA+GGG | 0.459626 | 2_2:+55589953 | Msa0258900:CDS |
| TGAATGTGTAAAGGGATTTG+AGG | 0.460264 | 2_2:-55587770 | None:intergenic |
| AAGAACACGAAATGGAGAAA+AGG | 0.461476 | 2_2:+55589952 | Msa0258900:CDS |
| ACAAAAGGTATTGAAGTTGA+TGG | 0.461588 | 2_2:+55588770 | Msa0258900:CDS |
| ATATATTGGAAGATACGTTA+AGG | 0.461721 | 2_2:-55587722 | None:intergenic |
| AGCATCCATGCCTCTAAAGC+AGG | 0.462938 | 2_2:-55588843 | None:intergenic |
| TAAGTAGTGATGATTCTAAT+CGG | 0.463115 | 2_2:-55588098 | None:intergenic |
| GAAGAAGATATGAAGAAAAG+TGG | 0.464871 | 2_2:-55587617 | None:intergenic |
| TATCATGTCCCTCCAAAGCC+AGG | 0.466896 | 2_2:-55590802 | None:intergenic |
| GTTATGTAGATCAGTGTTGT+TGG | 0.468843 | 2_2:+55588580 | Msa0258900:CDS |
| ACCACAAAAGTTAGATCCAT+TGG | 0.471476 | 2_2:+55588604 | Msa0258900:CDS |
| TTGAAGAGGAAAAGATTGCT+TGG | 0.472224 | 2_2:+55589775 | Msa0258900:CDS |
| AAGGTAAAGCAGAGAACAAA+AGG | 0.472992 | 2_2:+55588755 | Msa0258900:intron |
| GAAGAATTGTGGTAAATGTA+AGG | 0.474371 | 2_2:+55589527 | Msa0258900:CDS |
| AGAAATAAAGAAGAAGAGAA+AGG | 0.475340 | 2_2:+55590227 | Msa0258900:CDS |
| GATTGAGAGGGAAAGGAAAA+GGG | 0.476756 | 2_2:-55587672 | None:intergenic |
| TGGAGTCAAGAACCGTCTTA+AGG | 0.477784 | 2_2:+55589551 | Msa0258900:CDS |
| CAATTTAAAATTATTGGATG+AGG | 0.477785 | 2_2:-55587982 | None:intergenic |
| AGAGGAAATGAAAAGGGAAT+CGG | 0.478419 | 2_2:+55590043 | Msa0258900:CDS |
| GATGATATTGATGTTAATCC+AGG | 0.478815 | 2_2:+55590251 | Msa0258900:CDS |
| TGTCTGACACGAGGACATAA+TGG | 0.479016 | 2_2:-55588186 | None:intergenic |
| GCATTGAAGTTAGTGTAAAG+TGG | 0.479050 | 2_2:-55587844 | None:intergenic |
| CATTGAAGTTAGTGTAAAGT+GGG | 0.482528 | 2_2:-55587843 | None:intergenic |
| TAGCGTATTTGAATGTGTAA+AGG | 0.487478 | 2_2:-55587779 | None:intergenic |
| TTGAGTTTGAGGTACATTGA+TGG | 0.490634 | 2_2:+55590761 | Msa0258900:CDS |
| TTATGTAGATCAGTGTTGTT+GGG | 0.494159 | 2_2:+55588581 | Msa0258900:CDS |
| TGATCCCTGCTTTAGAGGCA+TGG | 0.494678 | 2_2:+55588838 | Msa0258900:CDS |
| TCAAGTTGAGGTCAGCATCA+TGG | 0.495390 | 2_2:-55587902 | None:intergenic |
| GTATCAATTTGAAGAGAAAA+GGG | 0.497216 | 2_2:+55590163 | Msa0258900:CDS |
| ATTTCTTTCTTCTCTTTCAA+AGG | 0.498272 | 2_2:-55588443 | None:intergenic |
| TTGCAATGCTGATTTAATAG+AGG | 0.498526 | 2_2:+55588868 | Msa0258900:CDS |
| ATTATTGGATGAGGTTAGGA+AGG | 0.504175 | 2_2:-55587973 | None:intergenic |
| TCCTTGAGTTTCTTAAGACC+TGG | 0.504987 | 2_2:-55590269 | None:intergenic |
| TACATTGAAGAAGCTTCTAA+AGG | 0.509779 | 2_2:+55589593 | Msa0258900:CDS |
| AATTGTGGTAAATGTAAGGT+TGG | 0.511853 | 2_2:+55589531 | Msa0258900:CDS |
| GTTCCATCTTACCAAAACAT+TGG | 0.512643 | 2_2:+55587872 | Msa0258900:five_prime_UTR |
| TATATTGGAAGATACGTTAA+GGG | 0.513776 | 2_2:-55587721 | None:intergenic |
| GCGATCAAATATTATATCGC+TGG | 0.516759 | 2_2:+55588048 | Msa0258900:five_prime_UTR |
| TGATGATGAGTTGCCATAGA+AGG | 0.520762 | 2_2:-55588374 | None:intergenic |
| GAAAAGTGGTCACAATTCAA+TGG | 0.522775 | 2_2:-55587603 | None:intergenic |
| TGAATTGATCGATTTGGTTG+CGG | 0.523191 | 2_2:-55589701 | None:intergenic |
| GAGCAGCATGCCCCTCATCT+TGG | 0.529885 | 2_2:+55589653 | Msa0258900:CDS |
| ACAAGTAGAGGAAATGAAAA+GGG | 0.531779 | 2_2:+55590037 | Msa0258900:CDS |
| AGATGATAAAGAAGAAAATG+AGG | 0.536416 | 2_2:+55590661 | Msa0258900:CDS |
| GAAGCTTTAAGTTGATTGAG+AGG | 0.539320 | 2_2:-55587685 | None:intergenic |
| AAAACTTGCTGCTACACTAT+GGG | 0.545934 | 2_2:+55588481 | Msa0258900:CDS |
| AACTCCTTCAAGGATCAAGA+AGG | 0.548905 | 2_2:+55588517 | Msa0258900:CDS |
| GTTTGTGTGTGTTCAAGTTG+AGG | 0.562787 | 2_2:-55587914 | None:intergenic |
| AAGCTTTAAGTTGATTGAGA+GGG | 0.564192 | 2_2:-55587684 | None:intergenic |
| TTTGGAATTCCAAAATCTAG+AGG | 0.564517 | 2_2:+55590319 | Msa0258900:CDS |
| GGGAAGTATTTGCTTCAACA+AGG | 0.569289 | 2_2:+55590526 | Msa0258900:CDS |
| TTGCATTTGAGAAGAAGCTA+AGG | 0.573006 | 2_2:+55589853 | Msa0258900:CDS |
| CCAAAACGCAAGAAGAATTG+TGG | 0.584387 | 2_2:+55589516 | Msa0258900:CDS |
| GGAAGTATTTGCTTCAACAA+GGG | 0.586753 | 2_2:+55590527 | Msa0258900:CDS |
| ACAATACACCAGCACCTATG+TGG | 0.587966 | 2_2:+55588333 | Msa0258900:CDS |
| GATGATAAAGAAGAAAATGA+GGG | 0.588141 | 2_2:+55590662 | Msa0258900:CDS |
| GATGAATTAGCCAAAGGTGT+TGG | 0.590367 | 2_2:+55590002 | Msa0258900:CDS |
| AGAAGATAGATCACAAGTAG+AGG | 0.595577 | 2_2:+55590025 | Msa0258900:CDS |
| GAGTTTGAGGTACATTGATG+GGG | 0.599467 | 2_2:+55590763 | Msa0258900:CDS |
| CGTTACTCATAGCCAAGATG+AGG | 0.599564 | 2_2:-55589665 | None:intergenic |
| GAAAATGCCCTGGCTTTGGA+GGG | 0.600285 | 2_2:+55590794 | Msa0258900:CDS |
| TTGGAAGATACGTTAAGGGT+AGG | 0.602361 | 2_2:-55587717 | None:intergenic |
| GGAAGCAGAGGAAAATGCCC+TGG | 0.603191 | 2_2:+55590784 | Msa0258900:CDS |
| TCTGAGAAAGGACTAACCAA+TGG | 0.604769 | 2_2:-55588620 | None:intergenic |
| AGGAAAGAGACAAAGTTGAG+AGG | 0.605019 | 2_2:+55588558 | Msa0258900:CDS |
| AAAGGGTGATGAAGACGAAG+TGG | 0.607815 | 2_2:-55588258 | None:intergenic |
| TCCAGGTCTTAAGAAACTCA+AGG | 0.612971 | 2_2:+55590268 | Msa0258900:CDS |
| GTTACTCATAGCCAAGATGA+GGG | 0.620249 | 2_2:-55589664 | None:intergenic |
| GTACATTGATGGGGAAGCAG+AGG | 0.621003 | 2_2:+55590772 | Msa0258900:CDS |
| GCATCCATGCCTCTAAAGCA+GGG | 0.626695 | 2_2:-55588842 | None:intergenic |
| CATTTGAGAAGAAGCTAAGG+AGG | 0.627117 | 2_2:+55589856 | Msa0258900:CDS |
| ATCATGTCCCTCCAAAGCCA+GGG | 0.630793 | 2_2:-55590801 | None:intergenic |
| GTTTGTGATGAATTAGCCAA+AGG | 0.638876 | 2_2:+55589996 | Msa0258900:CDS |
| GGGTGATGAAGACGAAGTGG+AGG | 0.640107 | 2_2:-55588255 | None:intergenic |
| ATTGGTTAGTCCTTTCTCAG+AGG | 0.645866 | 2_2:+55588622 | Msa0258900:CDS |
| GCTGGCCCAGATCGCAATCG+CGG | 0.648519 | 2_2:+55588066 | Msa0258900:five_prime_UTR |
| CATAACAAGATCAGAAAACG+AGG | 0.678416 | 2_2:+55588227 | Msa0258900:CDS |
| CGTCTTAAGGAAGCTAAAAG+CGG | 0.687525 | 2_2:+55589564 | Msa0258900:CDS |
| TTACTCATAGCCAAGATGAG+GGG | 0.694561 | 2_2:-55589663 | None:intergenic |
| AGAAAGAGAGAAGATTCGCG+AGG | 0.695830 | 2_2:+55589806 | Msa0258900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTACAAATATGATTA+AGG | + | chr2_2:55588736-55588755 | Msa0258900:intron | 10.0% |
| !! | AATATAATCAATTAGAAATT+TGG | + | chr2_2:55588905-55588924 | Msa0258900:intron | 10.0% |
| !! | TTAGTTAATCTAATAAAAAA+TGG | - | chr2_2:55588969-55588988 | None:intergenic | 10.0% |
| !!! | AAATCAATTGAATTTATTTT+TGG | + | chr2_2:55590626-55590645 | Msa0258900:CDS | 10.0% |
| !!! | AATAATTTTAAATTGCAGTT+GGG | + | chr2_2:55587990-55588009 | Msa0258900:five_prime_UTR | 15.0% |
| !! | ATCATATTTGTAAAAAAAAC+AGG | - | chr2_2:55588734-55588753 | None:intergenic | 15.0% |
| !!! | CATCTATACTTATTTATTTT+TGG | + | chr2_2:55589436-55589455 | Msa0258900:intron | 15.0% |
| !! | TTTCAATTGATAAAGATATA+GGG | + | chr2_2:55590483-55590502 | Msa0258900:CDS | 15.0% |
| !!! | TTTGGATACAAAAGTTTTAT+GGG | - | chr2_2:55587946-55587965 | None:intergenic | 20.0% |
| !!! | CAATTTAAAATTATTGGATG+AGG | - | chr2_2:55587985-55588004 | None:intergenic | 20.0% |
| !!! | CAACTGCAATTTAAAATTAT+TGG | - | chr2_2:55587991-55588010 | None:intergenic | 20.0% |
| !!! | CAATAATTTTAAATTGCAGT+TGG | + | chr2_2:55587989-55588008 | Msa0258900:five_prime_UTR | 20.0% |
| !! | ATTGTGAAACAAAAAAATCA+GGG | - | chr2_2:55588164-55588183 | None:intergenic | 20.0% |
| !! | AATTGTGAAACAAAAAAATC+AGG | - | chr2_2:55588165-55588184 | None:intergenic | 20.0% |
| !! | AATCTATATCTTCTTGAAAA+GGG | - | chr2_2:55588278-55588297 | None:intergenic | 20.0% |
| !! | AAATCTATATCTTCTTGAAA+AGG | - | chr2_2:55588279-55588298 | None:intergenic | 20.0% |
| !! | AATAAACTTTGTTAGTTCAA+TGG | + | chr2_2:55588696-55588715 | Msa0258900:intron | 20.0% |
| !! | TAATATGTTAAGTGTATGTT+TGG | - | chr2_2:55589202-55589221 | None:intergenic | 20.0% |
| !!! | TACTTATTTATTTTTGGTCA+CGG | + | chr2_2:55589442-55589461 | Msa0258900:intron | 20.0% |
| !!! | CTATTTGAACAAAACATTTT+TGG | + | chr2_2:55590301-55590320 | Msa0258900:CDS | 20.0% |
| !! | TCAATCTATTGAATTGAATA+TGG | + | chr2_2:55590391-55590410 | Msa0258900:CDS | 20.0% |
| !! | GTTTCAATTGATAAAGATAT+AGG | + | chr2_2:55590482-55590501 | Msa0258900:CDS | 20.0% |
| !! | TACAAATAGTACTAAAAAGA+AGG | + | chr2_2:55590553-55590572 | Msa0258900:CDS | 20.0% |
| !!! | GTGTTAGTATTTATTTTTCA+TGG | + | chr2_2:55590924-55590943 | Msa0258900:three_prime_UTR | 20.0% |
| ! | TATATTGGAAGATACGTTAA+GGG | - | chr2_2:55587724-55587743 | None:intergenic | 25.0% |
| ! | ATATATTGGAAGATACGTTA+AGG | - | chr2_2:55587725-55587744 | None:intergenic | 25.0% |
| !! | TCATGTATACTTGTTCTTTT+TGG | - | chr2_2:55587813-55587832 | None:intergenic | 25.0% |
| !! | GTTTGGATACAAAAGTTTTA+TGG | - | chr2_2:55587947-55587966 | None:intergenic | 25.0% |
| ! | TAAAATTATTGGATGAGGTT+AGG | - | chr2_2:55587980-55587999 | None:intergenic | 25.0% |
| ! | TAAGTAGTGATGATTCTAAT+CGG | - | chr2_2:55588101-55588120 | None:intergenic | 25.0% |
| !!! | ATTTAAGAGAGCCATTTTAA+TGG | + | chr2_2:55588295-55588314 | Msa0258900:CDS | 25.0% |
| !!! | TTTAAGAGAGCCATTTTAAT+GGG | + | chr2_2:55588296-55588315 | Msa0258900:CDS | 25.0% |
| ! | ATTTCTTTCTTCTCTTTCAA+AGG | - | chr2_2:55588446-55588465 | None:intergenic | 25.0% |
| ! | GGAATCAATGAAAAGTAATA+AGG | + | chr2_2:55588538-55588557 | Msa0258900:CDS | 25.0% |
| ! | TTGAGAAGTGAAAAGTAAAA+TGG | - | chr2_2:55589374-55589393 | None:intergenic | 25.0% |
| ! | ATACTCAATATTGTTCTGAT+TGG | - | chr2_2:55589742-55589761 | None:intergenic | 25.0% |
| !! | TTTTATGTTCTCCATTTCTT+TGG | - | chr2_2:55589910-55589929 | None:intergenic | 25.0% |
| !! | TTCTTTCGACAATTTTGAAT+AGG | - | chr2_2:55589937-55589956 | None:intergenic | 25.0% |
| ! | TTTCTCTTCAAATTGATACT+TGG | - | chr2_2:55590162-55590181 | None:intergenic | 25.0% |
| ! | AGTATCAATTTGAAGAGAAA+AGG | + | chr2_2:55590162-55590181 | Msa0258900:CDS | 25.0% |
| ! | GTATCAATTTGAAGAGAAAA+GGG | + | chr2_2:55590163-55590182 | Msa0258900:CDS | 25.0% |
| ! | AGAAATAAAGAAGAAGAGAA+AGG | + | chr2_2:55590227-55590246 | Msa0258900:CDS | 25.0% |
| ! | ATGACAAAAAAAGTTACAAG+TGG | + | chr2_2:55590417-55590436 | Msa0258900:CDS | 25.0% |
| !!! | GAGAAGATCTTTTAAAGATT+GGG | + | chr2_2:55590505-55590524 | Msa0258900:CDS | 25.0% |
| !!! | AGAAGATCTTTTAAAGATTG+GGG | + | chr2_2:55590506-55590525 | Msa0258900:CDS | 25.0% |
| ! | AGATGATAAAGAAGAAAATG+AGG | + | chr2_2:55590661-55590680 | Msa0258900:CDS | 25.0% |
| ! | GATGATAAAGAAGAAAATGA+GGG | + | chr2_2:55590662-55590681 | Msa0258900:CDS | 25.0% |
| ! | CAAAATCTGGAAATGATATA+TGG | - | chr2_2:55590721-55590740 | None:intergenic | 25.0% |
| GAAGAAGATATGAAGAAAAG+TGG | - | chr2_2:55587620-55587639 | None:intergenic | 30.0% | |
| !! | AAGCTTTAAGTTGATTGAGA+GGG | - | chr2_2:55587687-55587706 | None:intergenic | 30.0% |
| AGCGTATTTGAATGTGTAAA+GGG | - | chr2_2:55587781-55587800 | None:intergenic | 30.0% | |
| TAGCGTATTTGAATGTGTAA+AGG | - | chr2_2:55587782-55587801 | None:intergenic | 30.0% | |
| ACATTCAAATACGCTATTCT+AGG | + | chr2_2:55587786-55587805 | Msa0258900:five_prime_UTR | 30.0% | |
| CATTGAAGTTAGTGTAAAGT+GGG | - | chr2_2:55587846-55587865 | None:intergenic | 30.0% | |
| !!! | TTTCCAATGTTTTGGTAAGA+TGG | - | chr2_2:55587878-55587897 | None:intergenic | 30.0% |
| GATGATTCTAATCGGAAAAA+AGG | - | chr2_2:55588093-55588112 | None:intergenic | 30.0% | |
| !! | TTAAGAGAGCCATTTTAATG+GGG | + | chr2_2:55588297-55588316 | Msa0258900:CDS | 30.0% |
| ! | ACTTTTCTTCCCCATTAAAA+TGG | - | chr2_2:55588309-55588328 | None:intergenic | 30.0% |
| !! | ATTTTAATGGGGAAGAAAAG+TGG | + | chr2_2:55588308-55588327 | Msa0258900:CDS | 30.0% |
| ! | TTTTAATGGGGAAGAAAAGT+GGG | + | chr2_2:55588309-55588328 | Msa0258900:CDS | 30.0% |
| !! | TTTGAACTTGTTTTCCACAT+AGG | - | chr2_2:55588350-55588369 | None:intergenic | 30.0% |
| TCAATGATTTAACTCCTTCA+AGG | + | chr2_2:55588507-55588526 | Msa0258900:CDS | 30.0% | |
| ! | TTATGTAGATCAGTGTTGTT+GGG | + | chr2_2:55588581-55588600 | Msa0258900:CDS | 30.0% |
| ! | TAGTAATTTACCTCTGAGAA+AGG | - | chr2_2:55588635-55588654 | None:intergenic | 30.0% |
| !! | ACAAAAGGTATTGAAGTTGA+TGG | + | chr2_2:55588770-55588789 | Msa0258900:CDS | 30.0% |
| !! | TTGCAATGCTGATTTAATAG+AGG | + | chr2_2:55588868-55588887 | Msa0258900:CDS | 30.0% |
| TTAGAGCTTCAACAAAATCA+CGG | + | chr2_2:55589144-55589163 | Msa0258900:intron | 30.0% | |
| GTATCACTATTCTTGATAGA+AGG | - | chr2_2:55589399-55589418 | None:intergenic | 30.0% | |
| GAAGAATTGTGGTAAATGTA+AGG | + | chr2_2:55589527-55589546 | Msa0258900:CDS | 30.0% | |
| AATTGTGGTAAATGTAAGGT+TGG | + | chr2_2:55589531-55589550 | Msa0258900:CDS | 30.0% | |
| TACATTGAAGAAGCTTCTAA+AGG | + | chr2_2:55589593-55589612 | Msa0258900:CDS | 30.0% | |
| CTTGAATGAATTGATCGATT+TGG | - | chr2_2:55589710-55589729 | None:intergenic | 30.0% | |
| CATGAAGATTTCCAAAGAAA+TGG | + | chr2_2:55589896-55589915 | Msa0258900:CDS | 30.0% | |
| ACAAGTAGAGGAAATGAAAA+GGG | + | chr2_2:55590037-55590056 | Msa0258900:CDS | 30.0% | |
| AATTCGAGAAGAAGTTGAAA+AGG | + | chr2_2:55590070-55590089 | Msa0258900:CDS | 30.0% | |
| GATGATATTGATGTTAATCC+AGG | + | chr2_2:55590251-55590270 | Msa0258900:CDS | 30.0% | |
| ! | TTTGGAATTCCAAAATCTAG+AGG | + | chr2_2:55590319-55590338 | Msa0258900:CDS | 30.0% |
| ! | CATTATCTTCCTCTAGATTT+TGG | - | chr2_2:55590331-55590350 | None:intergenic | 30.0% |
| !!! | TGAGAATATTCCACTTTTTG+AGG | + | chr2_2:55590451-55590470 | Msa0258900:CDS | 30.0% |
| !! | GGAGAAGATCTTTTAAAGAT+TGG | + | chr2_2:55590504-55590523 | Msa0258900:CDS | 30.0% |
| ACTAAAAAGAAGGACTTTGA+TGG | + | chr2_2:55590563-55590582 | Msa0258900:CDS | 30.0% | |
| TAGACTCATAATAGGCTTAT+AGG | - | chr2_2:55590693-55590712 | None:intergenic | 30.0% | |
| CCACTTTCTTTATCAAAATC+TGG | - | chr2_2:55590734-55590753 | None:intergenic | 30.0% | |
| !! | CCAGATTTTGATAAAGAAAG+TGG | + | chr2_2:55590731-55590750 | Msa0258900:CDS | 30.0% |
| TTGTGCACGAAGAAAATAAA+AGG | + | chr2_2:55590835-55590854 | Msa0258900:exon | 30.0% | |
| GAAAAGTGGTCACAATTCAA+TGG | - | chr2_2:55587606-55587625 | None:intergenic | 35.0% | |
| !! | TTAAGTTGATTGAGAGGGAA+AGG | - | chr2_2:55587682-55587701 | None:intergenic | 35.0% |
| !! | GAAGCTTTAAGTTGATTGAG+AGG | - | chr2_2:55587688-55587707 | None:intergenic | 35.0% |
| GGGAATCTGTCAACATATAT+TGG | - | chr2_2:55587739-55587758 | None:intergenic | 35.0% | |
| !!! | TTGACAGATTCCCACTTTTT+TGG | + | chr2_2:55587746-55587765 | Msa0258900:five_prime_UTR | 35.0% |
| GATTTGAGGACCAAAAAAGT+GGG | - | chr2_2:55587759-55587778 | None:intergenic | 35.0% | |
| TGAATGTGTAAAGGGATTTG+AGG | - | chr2_2:55587773-55587792 | None:intergenic | 35.0% | |
| GCATTGAAGTTAGTGTAAAG+TGG | - | chr2_2:55587847-55587866 | None:intergenic | 35.0% | |
| GTTCCATCTTACCAAAACAT+TGG | + | chr2_2:55587872-55587891 | Msa0258900:five_prime_UTR | 35.0% | |
| !! | ATGGGCTTTTTCCAATGTTT+TGG | - | chr2_2:55587886-55587905 | None:intergenic | 35.0% |
| !! | GGATACAAAAGTTTTATGGG+AGG | - | chr2_2:55587943-55587962 | None:intergenic | 35.0% |
| ATTATTGGATGAGGTTAGGA+AGG | - | chr2_2:55587976-55587995 | None:intergenic | 35.0% | |
| GCGATCAAATATTATATCGC+TGG | + | chr2_2:55588048-55588067 | Msa0258900:five_prime_UTR | 35.0% | |
| CATAACAAGATCAGAAAACG+AGG | + | chr2_2:55588227-55588246 | Msa0258900:CDS | 35.0% | |
| AAGTTCAAAGTCACCTTCTA+TGG | + | chr2_2:55588361-55588380 | Msa0258900:CDS | 35.0% | |
| !!! | AAGCTGTGTTTTTTGTAGCA+TGG | - | chr2_2:55588400-55588419 | None:intergenic | 35.0% |
| !! | AAAACTTGCTGCTACACTAT+GGG | + | chr2_2:55588481-55588500 | Msa0258900:CDS | 35.0% |
| GTTATGTAGATCAGTGTTGT+TGG | + | chr2_2:55588580-55588599 | Msa0258900:CDS | 35.0% | |
| ACCACAAAAGTTAGATCCAT+TGG | + | chr2_2:55588604-55588623 | Msa0258900:CDS | 35.0% | |
| ! | ACCAATGGATCTAACTTTTG+TGG | - | chr2_2:55588608-55588627 | None:intergenic | 35.0% |
| AAGGTAAAGCAGAGAACAAA+AGG | + | chr2_2:55588755-55588774 | Msa0258900:intron | 35.0% | |
| !! | TGTTGACTTTGATTGTCACA+CGG | + | chr2_2:55589055-55589074 | Msa0258900:intron | 35.0% |
| ! | TTTGATTGTCACACGGTTTT+TGG | + | chr2_2:55589062-55589081 | Msa0258900:intron | 35.0% |
| TGAATTTGGCAAAAACACGT+TGG | - | chr2_2:55589174-55589193 | None:intergenic | 35.0% | |
| TGTTAAGTGTATGTTTGGAC+CGG | - | chr2_2:55589197-55589216 | None:intergenic | 35.0% | |
| !! | TGAATTGATCGATTTGGTTG+CGG | - | chr2_2:55589704-55589723 | None:intergenic | 35.0% |
| !! | TCTCATGAAGCATTTTGAAG+AGG | + | chr2_2:55589761-55589780 | Msa0258900:CDS | 35.0% |
| TTGAAGAGGAAAAGATTGCT+TGG | + | chr2_2:55589775-55589794 | Msa0258900:CDS | 35.0% | |
| TTGCATTTGAGAAGAAGCTA+AGG | + | chr2_2:55589853-55589872 | Msa0258900:CDS | 35.0% | |
| ATTGTCGAAAGAACACGAAA+TGG | + | chr2_2:55589944-55589963 | Msa0258900:CDS | 35.0% | |
| AAGAACACGAAATGGAGAAA+AGG | + | chr2_2:55589952-55589971 | Msa0258900:CDS | 35.0% | |
| AGAACACGAAATGGAGAAAA+GGG | + | chr2_2:55589953-55589972 | Msa0258900:CDS | 35.0% | |
| ! | GAAAAGGGCTAAAGAGATTT+TGG | + | chr2_2:55589968-55589987 | Msa0258900:CDS | 35.0% |
| GTTTGTGATGAATTAGCCAA+AGG | + | chr2_2:55589996-55590015 | Msa0258900:CDS | 35.0% | |
| AGAAGATAGATCACAAGTAG+AGG | + | chr2_2:55590025-55590044 | Msa0258900:CDS | 35.0% | |
| CACAAGTAGAGGAAATGAAA+AGG | + | chr2_2:55590036-55590055 | Msa0258900:CDS | 35.0% | |
| AGAGGAAATGAAAAGGGAAT+CGG | + | chr2_2:55590043-55590062 | Msa0258900:CDS | 35.0% | |
| ! | ACTCTTTTTGCCTCAAAAAG+TGG | - | chr2_2:55590464-55590483 | None:intergenic | 35.0% |
| !! | GGAAGTATTTGCTTCAACAA+GGG | + | chr2_2:55590527-55590546 | Msa0258900:CDS | 35.0% |
| !! | AGTTTTGATCAGCTTGAAAG+TGG | + | chr2_2:55590602-55590621 | Msa0258900:CDS | 35.0% |
| TGGTCTCTTAGACTCATAAT+AGG | - | chr2_2:55590701-55590720 | None:intergenic | 35.0% | |
| !!! | GTGGTAAACTTTTGAGTTTG+AGG | + | chr2_2:55590750-55590769 | Msa0258900:CDS | 35.0% |
| ! | TTGAGTTTGAGGTACATTGA+TGG | + | chr2_2:55590761-55590780 | Msa0258900:CDS | 35.0% |
| ! | TGAGTTTGAGGTACATTGAT+GGG | + | chr2_2:55590762-55590781 | Msa0258900:CDS | 35.0% |
| GATTGAGAGGGAAAGGAAAA+GGG | - | chr2_2:55587675-55587694 | None:intergenic | 40.0% | |
| TGATTGAGAGGGAAAGGAAA+AGG | - | chr2_2:55587676-55587695 | None:intergenic | 40.0% | |
| CGTTAAGGGTAGGCAATAAA+TGG | - | chr2_2:55587710-55587729 | None:intergenic | 40.0% | |
| TTGGAAGATACGTTAAGGGT+AGG | - | chr2_2:55587720-55587739 | None:intergenic | 40.0% | |
| GGATTTGAGGACCAAAAAAG+TGG | - | chr2_2:55587760-55587779 | None:intergenic | 40.0% | |
| !! | GTTTGTGTGTGTTCAAGTTG+AGG | - | chr2_2:55587917-55587936 | None:intergenic | 40.0% |
| ! | AAGATGTTTTGTCTGACACG+AGG | - | chr2_2:55588198-55588217 | None:intergenic | 40.0% |
| ! | TGATGATGAGTTGCCATAGA+AGG | - | chr2_2:55588377-55588396 | None:intergenic | 40.0% |
| !! | GAAAACTTGCTGCTACACTA+TGG | + | chr2_2:55588480-55588499 | Msa0258900:CDS | 40.0% |
| AACTCCTTCAAGGATCAAGA+AGG | + | chr2_2:55588517-55588536 | Msa0258900:CDS | 40.0% | |
| GATTCCTTCTTGATCCTTGA+AGG | - | chr2_2:55588524-55588543 | None:intergenic | 40.0% | |
| AGGAAAGAGACAAAGTTGAG+AGG | + | chr2_2:55588558-55588577 | Msa0258900:CDS | 40.0% | |
| TCTGAGAAAGGACTAACCAA+TGG | - | chr2_2:55588623-55588642 | None:intergenic | 40.0% | |
| ! | ATTGGTTAGTCCTTTCTCAG+AGG | + | chr2_2:55588622-55588641 | Msa0258900:CDS | 40.0% |
| TTTGTTGATCCCTGCTTTAG+AGG | + | chr2_2:55588833-55588852 | Msa0258900:CDS | 40.0% | |
| !! | CGTGTTTTTGCCAAATTCAC+CGG | + | chr2_2:55589175-55589194 | Msa0258900:intron | 40.0% |
| TATGTTTGGACCGGTGAATT+TGG | - | chr2_2:55589188-55589207 | None:intergenic | 40.0% | |
| ACTGCATCAGTGCATACATA+AGG | - | chr2_2:55589325-55589344 | None:intergenic | 40.0% | |
| !!! | ATTTTTGGTCACGGTTGAGA+AGG | + | chr2_2:55589451-55589470 | Msa0258900:intron | 40.0% |
| ! | CCACAATTCTTCTTGCGTTT+TGG | - | chr2_2:55589519-55589538 | None:intergenic | 40.0% |
| CCAAAACGCAAGAAGAATTG+TGG | + | chr2_2:55589516-55589535 | Msa0258900:CDS | 40.0% | |
| !!! | CGCTTTTAGCTTCCTTAAGA+CGG | - | chr2_2:55589566-55589585 | None:intergenic | 40.0% |
| CGTCTTAAGGAAGCTAAAAG+CGG | + | chr2_2:55589564-55589583 | Msa0258900:CDS | 40.0% | |
| TTACTCATAGCCAAGATGAG+GGG | - | chr2_2:55589666-55589685 | None:intergenic | 40.0% | |
| GTTACTCATAGCCAAGATGA+GGG | - | chr2_2:55589667-55589686 | None:intergenic | 40.0% | |
| !! | GAATTGATCGATTTGGTTGC+GGG | - | chr2_2:55589703-55589722 | None:intergenic | 40.0% |
| CATTTGAGAAGAAGCTAAGG+AGG | + | chr2_2:55589856-55589875 | Msa0258900:CDS | 40.0% | |
| ! | GATGAATTAGCCAAAGGTGT+TGG | + | chr2_2:55590002-55590021 | Msa0258900:CDS | 40.0% |
| TCTATCTTCTCCAACACCTT+TGG | - | chr2_2:55590015-55590034 | None:intergenic | 40.0% | |
| TCCAGGTCTTAAGAAACTCA+AGG | + | chr2_2:55590268-55590287 | Msa0258900:CDS | 40.0% | |
| TCCTTGAGTTTCTTAAGACC+TGG | - | chr2_2:55590272-55590291 | None:intergenic | 40.0% | |
| !! | GGGAAGTATTTGCTTCAACA+AGG | + | chr2_2:55590526-55590545 | Msa0258900:CDS | 40.0% |
| ! | GAGTTTGAGGTACATTGATG+GGG | + | chr2_2:55590763-55590782 | Msa0258900:CDS | 40.0% |
| ! | CAAGTTGAGGTCAGCATCAT+GGG | - | chr2_2:55587904-55587923 | None:intergenic | 45.0% |
| !! | TCAAGTTGAGGTCAGCATCA+TGG | - | chr2_2:55587905-55587924 | None:intergenic | 45.0% |
| !! | GGTTAGGAAGGTGTTTGGTT+TGG | - | chr2_2:55587964-55587983 | None:intergenic | 45.0% |
| !! | GATGAGGTTAGGAAGGTGTT+TGG | - | chr2_2:55587969-55587988 | None:intergenic | 45.0% |
| TGTCTGACACGAGGACATAA+TGG | - | chr2_2:55588189-55588208 | None:intergenic | 45.0% | |
| AAAGGGTGATGAAGACGAAG+TGG | - | chr2_2:55588261-55588280 | None:intergenic | 45.0% | |
| ACAATACACCAGCACCTATG+TGG | + | chr2_2:55588333-55588352 | Msa0258900:CDS | 45.0% | |
| !! | CTTGTTTTCCACATAGGTGC+TGG | - | chr2_2:55588344-55588363 | None:intergenic | 45.0% |
| GCTTTGCATTGTTCACGTTC+TGG | + | chr2_2:55588416-55588435 | Msa0258900:CDS | 45.0% | |
| TGGAGTCAAGAACCGTCTTA+AGG | + | chr2_2:55589551-55589570 | Msa0258900:CDS | 45.0% | |
| CGTTACTCATAGCCAAGATG+AGG | - | chr2_2:55589668-55589687 | None:intergenic | 45.0% | |
| AGAAAGAGAGAAGATTCGCG+AGG | + | chr2_2:55589806-55589825 | Msa0258900:CDS | 45.0% | |
| ! | TGGCTTCTGAGAGCTTCATA+TGG | - | chr2_2:55590142-55590161 | None:intergenic | 45.0% |
| !!! | ATTTTTCAATTTTTTTTTAT+AGG | + | chr2_2:55590858-55590877 | Msa0258900:three_prime_UTR | 5.0% |
| !!! | TTTTTCAATTTTTTTTTATA+GGG | + | chr2_2:55590859-55590878 | Msa0258900:three_prime_UTR | 5.0% |
| !! | TGATCCCTGCTTTAGAGGCA+TGG | + | chr2_2:55588838-55588857 | Msa0258900:CDS | 50.0% |
| !! | GCATCCATGCCTCTAAAGCA+GGG | - | chr2_2:55588845-55588864 | None:intergenic | 50.0% |
| !! | AGCATCCATGCCTCTAAAGC+AGG | - | chr2_2:55588846-55588865 | None:intergenic | 50.0% |
| !! | TGCTTTAGAGGCATGGATGC+TGG | + | chr2_2:55588845-55588864 | Msa0258900:CDS | 50.0% |
| GTACATTGATGGGGAAGCAG+AGG | + | chr2_2:55590772-55590791 | Msa0258900:CDS | 50.0% | |
| AGAGGAAAATGCCCTGGCTT+TGG | + | chr2_2:55590790-55590809 | Msa0258900:CDS | 50.0% | |
| !! | GAAAATGCCCTGGCTTTGGA+GGG | + | chr2_2:55590794-55590813 | Msa0258900:CDS | 50.0% |
| ATCATGTCCCTCCAAAGCCA+GGG | - | chr2_2:55590804-55590823 | None:intergenic | 50.0% | |
| TATCATGTCCCTCCAAAGCC+AGG | - | chr2_2:55590805-55590824 | None:intergenic | 50.0% | |
| AAGGTCCGCGATTGCGATCT+GGG | - | chr2_2:55588074-55588093 | None:intergenic | 55.0% | |
| AAAGGTCCGCGATTGCGATC+TGG | - | chr2_2:55588075-55588094 | None:intergenic | 55.0% | |
| GGGTGATGAAGACGAAGTGG+AGG | - | chr2_2:55588258-55588277 | None:intergenic | 55.0% | |
| GGAAGCAGAGGAAAATGCCC+TGG | + | chr2_2:55590784-55590803 | Msa0258900:CDS | 55.0% | |
| !! | GGAAAATGCCCTGGCTTTGG+AGG | + | chr2_2:55590793-55590812 | Msa0258900:CDS | 55.0% |
| GAGCAGCATGCCCCTCATCT+TGG | + | chr2_2:55589653-55589672 | Msa0258900:CDS | 60.0% | |
| GCTGGCCCAGATCGCAATCG+CGG | + | chr2_2:55588066-55588085 | Msa0258900:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 55587596 | 55590984 | 55587596 | ID=Msa0258900;Name=Msa0258900 |
| chr2_2 | mRNA | 55587596 | 55590984 | 55587596 | ID=Msa0258900-mRNA-1;Parent=Msa0258900;Name=Msa0258900-mRNA-1;_AED=0.03;_eAED=0.03;_QI=595|1|1|1|1|1|3|131|645 |
| chr2_2 | exon | 55587596 | 55588643 | 55587596 | ID=Msa0258900-mRNA-1:exon:16804;Parent=Msa0258900-mRNA-1 |
| chr2_2 | exon | 55588758 | 55588889 | 55588758 | ID=Msa0258900-mRNA-1:exon:16805;Parent=Msa0258900-mRNA-1 |
| chr2_2 | exon | 55589501 | 55590984 | 55589501 | ID=Msa0258900-mRNA-1:exon:16806;Parent=Msa0258900-mRNA-1 |
| chr2_2 | five_prime_UTR | 55587596 | 55588190 | 55587596 | ID=Msa0258900-mRNA-1:five_prime_utr;Parent=Msa0258900-mRNA-1 |
| chr2_2 | CDS | 55588191 | 55588643 | 55588191 | ID=Msa0258900-mRNA-1:cds;Parent=Msa0258900-mRNA-1 |
| chr2_2 | CDS | 55588758 | 55588889 | 55588758 | ID=Msa0258900-mRNA-1:cds;Parent=Msa0258900-mRNA-1 |
| chr2_2 | CDS | 55589501 | 55590853 | 55589501 | ID=Msa0258900-mRNA-1:cds;Parent=Msa0258900-mRNA-1 |
| chr2_2 | three_prime_UTR | 55590854 | 55590984 | 55590854 | ID=Msa0258900-mRNA-1:three_prime_utr;Parent=Msa0258900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
