AlfalfaGEDB | Msa0336110

M. sativa cultivar zhongmu-4 / Msa0336110

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0336110	XP_003596858.1	94.729	645	30	2	1	645	1	641	0.0	1187

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0336110	sp\|Q66GQ2\|Y5162_ARATH	26.872	227	164	1	219	443	187	413	4.60e-17	88.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017670	Msa0336110	0.814048	1.878761e-51	-8.615850e-47
Msa0017930	Msa0336110	0.814676	1.364654e-51	-8.615850e-47
Msa0077560	Msa0336110	0.804851	1.771524e-49	-8.615850e-47
Msa0082020	Msa0336110	0.805871	1.082944e-49	-8.615850e-47
Msa0094780	Msa0336110	0.801977	6.979047e-49	-8.615850e-47
Msa0098040	Msa0336110	0.813105	3.029106e-51	-8.615850e-47
Msa0219270	Msa0336110	0.859905	2.992901e-63	-8.615850e-47
Msa0226310	Msa0336110	0.824002	1.022127e-53	-8.615850e-47
Msa0251710	Msa0336110	0.813292	2.755651e-51	-8.615850e-47
Msa0258900	Msa0336110	0.838737	2.407399e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0336110	MtrunA17_Chr2g0321731	94.729	645	30	2	1	645	1	641	0.0	1187
Msa0336110	MtrunA17_Chr4g0026051	51.791	670	255	23	1	645	1	627	1.22e-175	514
Msa0336110	MtrunA17_Chr7g0266861	40.694	634	296	25	14	603	7	604	3.43e-109	343
Msa0336110	MtrunA17_Chr3g0098801	38.350	206	120	1	241	439	206	411	4.60e-34	138
Msa0336110	MtrunA17_Chr5g0397031	27.014	422	268	10	38	444	20	416	2.16e-33	135
Msa0336110	MtrunA17_Chr5g0444041	31.188	404	225	10	43	440	45	401	2.92e-30	126
Msa0336110	MtrunA17_Chr8g0347871	23.587	407	264	5	36	440	19	380	2.23e-26	114
Msa0336110	MtrunA17_Chr2g0288331	34.715	193	126	0	251	443	165	357	3.90e-23	103
Msa0336110	MtrunA17_Chr7g0275251	27.132	258	173	5	212	460	119	370	3.96e-17	85.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0336110	AT3G11590.1	39.868	607	311	20	14	602	15	585	7.89e-95	305
Msa0336110	AT3G11590.2	39.821	447	227	14	165	602	10	423	8.36e-67	226
Msa0336110	AT5G22310.1	32.882	517	220	17	10	510	4	409	7.99e-47	172
Msa0336110	AT1G50660.1	36.735	196	124	0	246	441	233	428	2.13e-34	140
Msa0336110	AT3G20350.1	35.385	195	126	0	246	440	210	404	5.92e-29	122
Msa0336110	AT5G41620.4	26.872	227	164	1	219	443	70	296	3.70e-18	88.6
Msa0336110	AT5G41620.3	26.872	227	164	1	219	443	70	296	3.70e-18	88.6
Msa0336110	AT5G41620.2	26.872	227	164	1	219	443	28	254	3.71e-18	88.2
Msa0336110	AT5G41620.1	26.872	227	164	1	219	443	187	413	4.67e-18	88.6
Msa0336110	AT1G64180.1	27.984	243	150	6	215	451	175	398	7.88e-16	81.6

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Find 125 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGCTGCTACACTAT+GGG	0.545934	2_4:+55396878	Msa0336110:CDS
AAAATCATTTGAGGTTAGGA+AGG	0.480101	2_4:-55396395	None:intergenic
AAAGGGTGATGAGGAAGAAG+TGG	0.516259	2_4:-55396655	None:intergenic
AAATATATATCTTCTTGAAA+AGG	0.363591	2_4:-55396673	None:intergenic
AACTCCTTCAAGGATCAAGA+AGG	0.548905	2_4:+55396914	Msa0336110:CDS
AAGAGCACGAAATGGAGAAA+AGG	0.454445	2_4:+55398349	Msa0336110:CDS
AAGCTTTAAGTTGATTGAGA+GGG	0.564192	2_4:-55396102	None:intergenic
AAGGTAAAGCAGAGAACAAA+AGG	0.472992	2_4:+55397154	Msa0336110:intron
AAGTTCAAAGTCACCTTCTA+TGG	0.349666	2_4:+55396758	Msa0336110:CDS
AATATATATCTTCTTGAAAA+GGG	0.431365	2_4:-55396672	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGAAGATATGAAGAAAAG+TGG	-	chr2_4:55396038-55396057	None:intergenic	30.0%
AGCGTATTTGAATGTGTAAA+GGG	-	chr2_4:55396199-55396218	None:intergenic	30.0%
TAGCGTATTTGAATGTGTAA+AGG	-	chr2_4:55396200-55396219	None:intergenic	30.0%
ACATTCAAATACGCTATTCT+AGG	+	chr2_4:55396204-55396223	Msa0336110:five_prime_UTR	30.0%
CATTCAAATACGCTATTCTA+GGG	+	chr2_4:55396205-55396224	Msa0336110:five_prime_UTR	30.0%
CATTGAAGTTAGTGTAAAGT+GGG	-	chr2_4:55396265-55396284	None:intergenic	30.0%
TCAATGATTTAACTCCTTCA+AGG	+	chr2_4:55396904-55396923	Msa0336110:CDS	30.0%
TTAGAGCTTCAACAAAATCA+CGG	+	chr2_4:55397543-55397562	Msa0336110:intron	30.0%
GTATCACTATTCTTGATAGA+AGG	-	chr2_4:55397796-55397815	None:intergenic	30.0%
GAAGAATTGTGGTAAATGTA+AGG	+	chr2_4:55397924-55397943	Msa0336110:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	55396003	55399379	55396003	ID=Msa0336110;Name=Msa0336110
chr2_4	mRNA	55396003	55399379	55396003	ID=Msa0336110-mRNA-1;Parent=Msa0336110;Name=Msa0336110-mRNA-1;_AED=0.02;_eAED=0.02;_QI=585\|1\|1\|1\|1\|1\|3\|129\|645
chr2_4	exon	55396003	55397040	55396003	ID=Msa0336110-mRNA-1:exon:16806;Parent=Msa0336110-mRNA-1
chr2_4	exon	55397157	55397288	55397157	ID=Msa0336110-mRNA-1:exon:16807;Parent=Msa0336110-mRNA-1
chr2_4	exon	55397898	55399379	55397898	ID=Msa0336110-mRNA-1:exon:16808;Parent=Msa0336110-mRNA-1
chr2_4	five_prime_UTR	55396003	55396587	55396003	ID=Msa0336110-mRNA-1:five_prime_utr;Parent=Msa0336110-mRNA-1
chr2_4	CDS	55396588	55397040	55396588	ID=Msa0336110-mRNA-1:cds;Parent=Msa0336110-mRNA-1
chr2_4	CDS	55397157	55397288	55397157	ID=Msa0336110-mRNA-1:cds;Parent=Msa0336110-mRNA-1
chr2_4	CDS	55397898	55399250	55397898	ID=Msa0336110-mRNA-1:cds;Parent=Msa0336110-mRNA-1
chr2_4	three_prime_UTR	55399251	55399379	55399251	ID=Msa0336110-mRNA-1:three_prime_utr;Parent=Msa0336110-mRNA-1

Gene Sequence

>Msa0336110

ATGTCCTCGTGTCAGACAAAACATCTTAAACAGAAACATAACAAGATCAGAAAACGAGGTTGTTCCTCCACTTCTTCCTCATCACCCTTTTCAAGAAGATATATATTTAAGAGAGCCATTTTGATGGGGAAGAAAAGTGGGTACAATACACCAGCACCTATGTGGAAAACAAGTTCAAAGTCACCTTCTATGGCAACTCATCATCACCATGCTACAAAAAACACAGCTTTGCATTCTTCACGTTCTGGATTACCCTTCAAAGAGAAGAAAGAAATTTCTGTGTCTGCTAGAAAACTTGCTGCTACACTATGGGAAATCAATGATTTAACTCCTTCAAGGATCAAGAAGGAATCAATGAAAAGTAATAAGGAAAGAGACAAAGTTGAGAGGTTATGTAGATCAGTGTTGTTGGGACCACAAAAGTTAGATCCATTGGTTAGTCCTTTCTCAGAGGTAAAGCAGAGAACAAAAGGTATTGAAGTTGATGGCTGCAAAAGAAATGTGTCAGATTTATCTCAACAATTTCACTTTGTTGATCCCTGCTTTAGAGGCATGGATGCTGGTTGCAATGCTGATTTAATAGAGAATGTTAGCAATAAGCCAAAACGCAAGAAGAATTGTGGTAAATGTAAGGTTGGAGTCAAGAACCGTCTTAAGGAAGCTAAAAGCGGCGTATCTACATCGAAGAAGCTTCTAAAGGTGTTAAGTCAAATTGTCGTTGAAGAGAAGCATTCGTTGAGCAGCATGCCCCTCATCTTGGCTATGAGTAACGAGCTTGATCGCGCCCGCAACCAAATCGATCAATTCATTCAAGAACAAAGCTCCAATCAGAACAATATTGAGTATCTCATGAAGCATTTTGAAGAGGAAAAGATTGCTTGGCAAAGAAGAGAAAGAGAGAAGATTCGCGAGGTGACAATGAGCATATCGCAAGAGCTTGAATTTGAGAAGAAGCTGAGGAGGCAAACTGAGAGACTGAACATGAAGATTTCCAAAGAAATGGAGAACATAAAAGATTCCTATTCAAAATTGTCGAAAGAGCACGAAATGGAGAAAAGGGCTAAAGAGATTTTGGAGCAAGTTCGTGATGAATTAGCCAAAGGTGTTGGAGAAGATAGATCACAAGTAGAGGAAATGAAAAGGGAATCAGAGAAAATTCGAGAAGAAGTTGAAAAGGAGAGAGAAATGCTTCAGTTAGCCGATATTTTGCGCGAAGAACGAGTCCATATGAAGCTCTCAGAAGCCAAGTATCAATTTGAAGAGAAAAGTGCAATGCTAGAAATTCTAAGAAATGAGCTTGAGAACTTTATAAGAAATAAAGAAGAAGAGAAAGGTGATGACATTGATGTTAATCCAGGGCTTAAAAAACTCAAGGATCTTGAATTCTATTTGAACAAAACATTTTTGGAATTTCAAAATCTAGATGAAGACAACGATTCAATAGAGCATGAAGATGAGTCAGTTGAGAGTGATCTTCAATCTATTGAATTGAATATGGACAATGACAAAAAAAGTTACAAGTGGAATTATTCTTGTGAGAATATTCCACTTTTTGAGGCAAAAAGAGTTTCAATTGATAAAGATATAGGGAGAAGATCTTTTAAAGATTGGGGAAGTATTTGCTTCAACAAGGCAACTACAAATAGTACTAAAAAGAAGGACTTTGATGGTATAAATATTCAAGAAAGTTTTGATCAGCTTGAAAGTGGAAAATCAATTGAATTTATTTTTGGAGATGAAATACAAGATGATAAAGAAGAAAATGAGGGTTATACCTATAAGCCTATTATGAGTCTAAGAGACCATATATCATTTCCAGATTTTGATAAAGAAAGTGGTAAACTTTTGAGTTTGAGGTACATTGATGGGGAAGGAGAGGAAAATGCCCTGGCTTTGGAGGGACATGATATGAAGAAAGATTGTGCACGAAGAAAATAA

Protein sequence

>Msa0336110

MSSCQTKHLKQKHNKIRKRGCSSTSSSSPFSRRYIFKRAILMGKKSGYNTPAPMWKTSSKSPSMATHHHHATKNTALHSSRSGLPFKEKKEISVSARKLAATLWEINDLTPSRIKKESMKSNKERDKVERLCRSVLLGPQKLDPLVSPFSEVKQRTKGIEVDGCKRNVSDLSQQFHFVDPCFRGMDAGCNADLIENVSNKPKRKKNCGKCKVGVKNRLKEAKSGVSTSKKLLKVLSQIVVEEKHSLSSMPLILAMSNELDRARNQIDQFIQEQSSNQNNIEYLMKHFEEEKIAWQRREREKIREVTMSISQELEFEKKLRRQTERLNMKISKEMENIKDSYSKLSKEHEMEKRAKEILEQVRDELAKGVGEDRSQVEEMKRESEKIREEVEKEREMLQLADILREERVHMKLSEAKYQFEEKSAMLEILRNELENFIRNKEEEKGDDIDVNPGLKKLKDLEFYLNKTFLEFQNLDEDNDSIEHEDESVESDLQSIELNMDNDKKSYKWNYSCENIPLFEAKRVSIDKDIGRRSFKDWGSICFNKATTNSTKKKDFDGINIQESFDQLESGKSIEFIFGDEIQDDKEENEGYTYKPIMSLRDHISFPDFDKESGKLLSLRYIDGEGEENALALEGHDMKKDCARRK*