Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336110 | XP_003596858.1 | 94.729 | 645 | 30 | 2 | 1 | 645 | 1 | 641 | 0.0 | 1187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336110 | sp|Q66GQ2|Y5162_ARATH | 26.872 | 227 | 164 | 1 | 219 | 443 | 187 | 413 | 4.60e-17 | 88.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017670 | Msa0336110 | 0.814048 | 1.878761e-51 | -8.615850e-47 |
| Msa0017930 | Msa0336110 | 0.814676 | 1.364654e-51 | -8.615850e-47 |
| Msa0077560 | Msa0336110 | 0.804851 | 1.771524e-49 | -8.615850e-47 |
| Msa0082020 | Msa0336110 | 0.805871 | 1.082944e-49 | -8.615850e-47 |
| Msa0094780 | Msa0336110 | 0.801977 | 6.979047e-49 | -8.615850e-47 |
| Msa0098040 | Msa0336110 | 0.813105 | 3.029106e-51 | -8.615850e-47 |
| Msa0219270 | Msa0336110 | 0.859905 | 2.992901e-63 | -8.615850e-47 |
| Msa0226310 | Msa0336110 | 0.824002 | 1.022127e-53 | -8.615850e-47 |
| Msa0251710 | Msa0336110 | 0.813292 | 2.755651e-51 | -8.615850e-47 |
| Msa0258900 | Msa0336110 | 0.838737 | 2.407399e-57 | -8.615850e-47 |
| Msa0288620 | Msa0336110 | 0.820303 | 7.366019e-53 | -8.615850e-47 |
| Msa0298410 | Msa0336110 | 0.836731 | 7.878460e-57 | -8.615850e-47 |
| Msa0304570 | Msa0336110 | 0.819866 | 9.271904e-53 | -8.615850e-47 |
| Msa0304680 | Msa0336110 | 0.817418 | 3.331593e-52 | -8.615850e-47 |
| Msa0307670 | Msa0336110 | 0.827333 | 1.658057e-54 | -8.615850e-47 |
| Msa0330520 | Msa0336110 | 0.834529 | 2.844159e-56 | -8.615850e-47 |
| Msa0336110 | Msa0412790 | 0.855588 | 5.705040e-62 | -8.615850e-47 |
| Msa0336110 | Msa0427700 | 0.821707 | 3.498379e-53 | -8.615850e-47 |
| Msa0336110 | Msa0626460 | 0.809201 | 2.127487e-50 | -8.615850e-47 |
| Msa0336110 | Msa0652770 | 0.809352 | 1.974172e-50 | -8.615850e-47 |
| Msa0336110 | Msa0657720 | 0.836399 | 9.573900e-57 | -8.615850e-47 |
| Msa0336110 | Msa0702790 | 0.838871 | 2.222478e-57 | -8.615850e-47 |
| Msa0336110 | Msa0703950 | 0.823665 | 1.225726e-53 | -8.615850e-47 |
| Msa0336110 | Msa0752450 | 0.815133 | 1.080606e-51 | -8.615850e-47 |
| Msa0336110 | Msa0770330 | 0.803739 | 3.019193e-49 | -8.615850e-47 |
| Msa0336110 | Msa0792370 | 0.813796 | 2.134678e-51 | -8.615850e-47 |
| Msa0336110 | Msa0828950 | 0.835096 | 2.046993e-56 | -8.615850e-47 |
| Msa0336110 | Msa0851850 | 0.800678 | 1.287823e-48 | -8.615850e-47 |
| Msa0336110 | Msa0855870 | 0.806369 | 8.507744e-50 | -8.615850e-47 |
| Msa0336110 | Msa0878280 | 0.806679 | 7.318082e-50 | -8.615850e-47 |
| Msa0336110 | Msa0945190 | 0.808966 | 2.388823e-50 | -8.615850e-47 |
| Msa0336110 | Msa1041710 | 0.821354 | 4.221812e-53 | -8.615850e-47 |
| Msa0336110 | Msa1074220 | 0.806885 | 6.620463e-50 | -8.615850e-47 |
| Msa0336110 | Msa1133680 | 0.823499 | 1.340678e-53 | -8.615850e-47 |
| Msa0336110 | Msa1165090 | 0.800927 | 1.145667e-48 | -8.615850e-47 |
| Msa0336110 | Msa1268240 | 0.803465 | 3.441327e-49 | -8.615850e-47 |
| Msa0336110 | Msa1341840 | 0.810510 | 1.112055e-50 | -8.615850e-47 |
| Msa0336110 | Msa1382300 | 0.807312 | 5.374979e-50 | -8.615850e-47 |
| Msa0336110 | Msa1382710 | 0.814202 | 1.736929e-51 | -8.615850e-47 |
| Msa0336110 | Msa1398810 | 0.808450 | 3.079285e-50 | -8.615850e-47 |
| Msa0336110 | Msa1407840 | 0.833444 | 5.315153e-56 | -8.615850e-47 |
| Msa0336110 | Msa1412000 | 0.812364 | 4.400480e-51 | -8.615850e-47 |
| Msa0336110 | Msa1437810 | 0.832541 | 8.911596e-56 | -8.615850e-47 |
| Msa0336110 | Msa1439270 | 0.812425 | 4.266739e-51 | -8.615850e-47 |
| Msa0336110 | Msa1454500 | 0.820136 | 8.044739e-53 | -8.615850e-47 |
| Msa0336110 | Msa1461370 | 0.803299 | 3.724888e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336110 | MtrunA17_Chr2g0321731 | 94.729 | 645 | 30 | 2 | 1 | 645 | 1 | 641 | 0.0 | 1187 |
| Msa0336110 | MtrunA17_Chr4g0026051 | 51.791 | 670 | 255 | 23 | 1 | 645 | 1 | 627 | 1.22e-175 | 514 |
| Msa0336110 | MtrunA17_Chr7g0266861 | 40.694 | 634 | 296 | 25 | 14 | 603 | 7 | 604 | 3.43e-109 | 343 |
| Msa0336110 | MtrunA17_Chr3g0098801 | 38.350 | 206 | 120 | 1 | 241 | 439 | 206 | 411 | 4.60e-34 | 138 |
| Msa0336110 | MtrunA17_Chr5g0397031 | 27.014 | 422 | 268 | 10 | 38 | 444 | 20 | 416 | 2.16e-33 | 135 |
| Msa0336110 | MtrunA17_Chr5g0444041 | 31.188 | 404 | 225 | 10 | 43 | 440 | 45 | 401 | 2.92e-30 | 126 |
| Msa0336110 | MtrunA17_Chr8g0347871 | 23.587 | 407 | 264 | 5 | 36 | 440 | 19 | 380 | 2.23e-26 | 114 |
| Msa0336110 | MtrunA17_Chr2g0288331 | 34.715 | 193 | 126 | 0 | 251 | 443 | 165 | 357 | 3.90e-23 | 103 |
| Msa0336110 | MtrunA17_Chr7g0275251 | 27.132 | 258 | 173 | 5 | 212 | 460 | 119 | 370 | 3.96e-17 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336110 | AT3G11590.1 | 39.868 | 607 | 311 | 20 | 14 | 602 | 15 | 585 | 7.89e-95 | 305 |
| Msa0336110 | AT3G11590.2 | 39.821 | 447 | 227 | 14 | 165 | 602 | 10 | 423 | 8.36e-67 | 226 |
| Msa0336110 | AT5G22310.1 | 32.882 | 517 | 220 | 17 | 10 | 510 | 4 | 409 | 7.99e-47 | 172 |
| Msa0336110 | AT1G50660.1 | 36.735 | 196 | 124 | 0 | 246 | 441 | 233 | 428 | 2.13e-34 | 140 |
| Msa0336110 | AT3G20350.1 | 35.385 | 195 | 126 | 0 | 246 | 440 | 210 | 404 | 5.92e-29 | 122 |
| Msa0336110 | AT5G41620.4 | 26.872 | 227 | 164 | 1 | 219 | 443 | 70 | 296 | 3.70e-18 | 88.6 |
| Msa0336110 | AT5G41620.3 | 26.872 | 227 | 164 | 1 | 219 | 443 | 70 | 296 | 3.70e-18 | 88.6 |
| Msa0336110 | AT5G41620.2 | 26.872 | 227 | 164 | 1 | 219 | 443 | 28 | 254 | 3.71e-18 | 88.2 |
| Msa0336110 | AT5G41620.1 | 26.872 | 227 | 164 | 1 | 219 | 443 | 187 | 413 | 4.67e-18 | 88.6 |
| Msa0336110 | AT1G64180.1 | 27.984 | 243 | 150 | 6 | 215 | 451 | 175 | 398 | 7.88e-16 | 81.6 |
| Msa0336110 | AT2G46250.1 | 28.218 | 202 | 126 | 3 | 218 | 419 | 152 | 334 | 1.22e-11 | 67.8 |
| Msa0336110 | AT2G46250.2 | 28.218 | 202 | 126 | 3 | 218 | 419 | 61 | 243 | 2.96e-11 | 66.2 |
Find 125 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAATTTATAAGATTTAT+TGG | 0.094563 | 2_4:-55396527 | None:intergenic |
| GAAAAGGGCTAAAGAGATTT+TGG | 0.212294 | 2_4:+55398365 | Msa0336110:CDS |
| TCAATCTATTGAATTGAATA+TGG | 0.239027 | 2_4:+55398788 | Msa0336110:CDS |
| ACATTCAAATACGCTATTCT+AGG | 0.241662 | 2_4:+55396204 | Msa0336110:five_prime_UTR |
| CCACTTTCTTTATCAAAATC+TGG | 0.249092 | 2_4:-55399128 | None:intergenic |
| CCACAATTCTTCTTGCGTTT+TGG | 0.249753 | 2_4:-55397913 | None:intergenic |
| CGTTAAGGGTTAGCAATAAA+TGG | 0.277816 | 2_4:-55396125 | None:intergenic |
| GTTTCAATTGATAAAGATAT+AGG | 0.289690 | 2_4:+55398879 | Msa0336110:CDS |
| TAGACTCATAATAGGCTTAT+AGG | 0.291883 | 2_4:-55399087 | None:intergenic |
| GAATTGATCGATTTGGTTGC+GGG | 0.322704 | 2_4:-55398097 | None:intergenic |
| GCTTTGCATTCTTCACGTTC+TGG | 0.330245 | 2_4:+55396813 | Msa0336110:CDS |
| GGGAATCTGTCAACATATAT+TGG | 0.333008 | 2_4:-55396154 | None:intergenic |
| TTTCAATTGATAAAGATATA+GGG | 0.337013 | 2_4:+55398880 | Msa0336110:CDS |
| TTGTGCACGAAGAAAATAAA+AGG | 0.339329 | 2_4:+55399232 | Msa0336110:exon |
| TCGTTCTTCGCGCAAAATAT+CGG | 0.342669 | 2_4:-55398511 | None:intergenic |
| GAAAACTTGCTGCTACACTA+TGG | 0.343354 | 2_4:+55396877 | Msa0336110:CDS |
| GGAATCAATGAAAAGTAATA+AGG | 0.347161 | 2_4:+55396935 | Msa0336110:CDS |
| AAGTTCAAAGTCACCTTCTA+TGG | 0.349666 | 2_4:+55396758 | Msa0336110:CDS |
| GATTCCTTCTTGATCCTTGA+AGG | 0.350174 | 2_4:-55396918 | None:intergenic |
| TTTGTTGATCCCTGCTTTAG+AGG | 0.354642 | 2_4:+55397232 | Msa0336110:CDS |
| CATGAAGATTTCCAAAGAAA+TGG | 0.357190 | 2_4:+55398293 | Msa0336110:CDS |
| ATACTCAATATTGTTCTGAT+TGG | 0.361199 | 2_4:-55398136 | None:intergenic |
| TGGTCTCTTAGACTCATAAT+AGG | 0.362914 | 2_4:-55399095 | None:intergenic |
| AAATATATATCTTCTTGAAA+AGG | 0.363591 | 2_4:-55396673 | None:intergenic |
| CTTGAATGAATTGATCGATT+TGG | 0.380451 | 2_4:-55398104 | None:intergenic |
| AGAGGAAAATGCCCTGGCTT+TGG | 0.385167 | 2_4:+55399187 | Msa0336110:CDS |
| CAAAATCTGGAAATGATATA+TGG | 0.386837 | 2_4:-55399115 | None:intergenic |
| AATTCGAGAAGAAGTTGAAA+AGG | 0.392229 | 2_4:+55398467 | Msa0336110:CDS |
| AATTTCTTTCTTCTCTTTGA+AGG | 0.394392 | 2_4:-55396841 | None:intergenic |
| CTGCAATTTAAAATCATTTG+AGG | 0.398925 | 2_4:-55396404 | None:intergenic |
| ATTTAAAATCATTTGAGGTT+AGG | 0.400046 | 2_4:-55396399 | None:intergenic |
| GTCACAATTCAATGGCCATT+TGG | 0.401202 | 2_4:-55396013 | None:intergenic |
| AGCGTATTTGAATGTGTAAA+GGG | 0.404399 | 2_4:-55396196 | None:intergenic |
| TCAATGATTTAACTCCTTCA+AGG | 0.406907 | 2_4:+55396904 | Msa0336110:CDS |
| TGCTTTAGAGGCATGGATGC+TGG | 0.415340 | 2_4:+55397244 | Msa0336110:CDS |
| GGTTAGGAAGGTGTTTGGTT+TGG | 0.424134 | 2_4:-55396383 | None:intergenic |
| TCTATCTTCTCCAACACCTT+TGG | 0.426390 | 2_4:-55398409 | None:intergenic |
| TGGCTTCTGAGAGCTTCATA+TGG | 0.428417 | 2_4:-55398536 | None:intergenic |
| AATATATATCTTCTTGAAAA+GGG | 0.431365 | 2_4:-55396672 | None:intergenic |
| TGATTGAGAGGGAAAGGAAA+AGG | 0.434179 | 2_4:-55396091 | None:intergenic |
| TTTGAGGTTAGGAAGGTGTT+TGG | 0.435577 | 2_4:-55396388 | None:intergenic |
| CTAACTTCTAACTAACCAAA+TGG | 0.437805 | 2_4:+55395998 | None:intergenic |
| GGAAAATGCCCTGGCTTTGG+AGG | 0.439312 | 2_4:+55399190 | Msa0336110:CDS |
| TTTATGAGAGGAGTGTTTGT+GGG | 0.441000 | 2_4:-55396350 | None:intergenic |
| TGAGTTTGAGGTACATTGAT+GGG | 0.446281 | 2_4:+55399159 | Msa0336110:CDS |
| TTTCTCTTCAAATTGATACT+TGG | 0.446447 | 2_4:-55398556 | None:intergenic |
| CACAAGTAGAGGAAATGAAA+AGG | 0.450688 | 2_4:+55398433 | Msa0336110:CDS |
| TATATTGGAAGATACGTTAA+GGG | 0.451927 | 2_4:-55396139 | None:intergenic |
| CAAGTTGAGGTCAGCATCAT+GGG | 0.453950 | 2_4:-55396323 | None:intergenic |
| AAGAGCACGAAATGGAGAAA+AGG | 0.454445 | 2_4:+55398349 | Msa0336110:CDS |
| TTAAGTTGATTGAGAGGGAA+AGG | 0.454730 | 2_4:-55396097 | None:intergenic |
| GATGACATTGATGTTAATCC+AGG | 0.456927 | 2_4:+55398648 | Msa0336110:CDS |
| ATATATTGGAAGATACGTTA+AGG | 0.458650 | 2_4:-55396140 | None:intergenic |
| AGAGCACGAAATGGAGAAAA+GGG | 0.460107 | 2_4:+55398350 | Msa0336110:CDS |
| TGAATGTGTAAAGGGATTTG+AGG | 0.460264 | 2_4:-55396188 | None:intergenic |
| ACAAAAGGTATTGAAGTTGA+TGG | 0.461588 | 2_4:+55397169 | Msa0336110:CDS |
| AGCATCCATGCCTCTAAAGC+AGG | 0.462938 | 2_4:-55397242 | None:intergenic |
| GAAGAAGATATGAAGAAAAG+TGG | 0.464871 | 2_4:-55396035 | None:intergenic |
| TATCATGTCCCTCCAAAGCC+AGG | 0.466896 | 2_4:-55399199 | None:intergenic |
| GTTATGTAGATCAGTGTTGT+TGG | 0.468843 | 2_4:+55396977 | Msa0336110:CDS |
| ACCACAAAAGTTAGATCCAT+TGG | 0.471476 | 2_4:+55397001 | Msa0336110:CDS |
| TTGAAGAGGAAAAGATTGCT+TGG | 0.472224 | 2_4:+55398172 | Msa0336110:CDS |
| AAGGTAAAGCAGAGAACAAA+AGG | 0.472992 | 2_4:+55397154 | Msa0336110:intron |
| GAAGAATTGTGGTAAATGTA+AGG | 0.474371 | 2_4:+55397924 | Msa0336110:CDS |
| AGAAATAAAGAAGAAGAGAA+AGG | 0.475340 | 2_4:+55398624 | Msa0336110:CDS |
| GATTGAGAGGGAAAGGAAAA+GGG | 0.476756 | 2_4:-55396090 | None:intergenic |
| TGGAGTCAAGAACCGTCTTA+AGG | 0.477784 | 2_4:+55397948 | Msa0336110:CDS |
| TGTCTGACACGAGGACATAA+TGG | 0.479016 | 2_4:-55396583 | None:intergenic |
| GCATTGAAGTTAGTGTAAAG+TGG | 0.479050 | 2_4:-55396263 | None:intergenic |
| AAAATCATTTGAGGTTAGGA+AGG | 0.480101 | 2_4:-55396395 | None:intergenic |
| CATTCAAATACGCTATTCTA+GGG | 0.481495 | 2_4:+55396205 | Msa0336110:five_prime_UTR |
| CATTGAAGTTAGTGTAAAGT+GGG | 0.482528 | 2_4:-55396262 | None:intergenic |
| TTGTGATTTACCTCTGAGAA+AGG | 0.485737 | 2_4:-55397029 | None:intergenic |
| TAGCGTATTTGAATGTGTAA+AGG | 0.487478 | 2_4:-55396197 | None:intergenic |
| TTGAGTTTGAGGTACATTGA+TGG | 0.490634 | 2_4:+55399158 | Msa0336110:CDS |
| TTATGTAGATCAGTGTTGTT+GGG | 0.494159 | 2_4:+55396978 | Msa0336110:CDS |
| TGATCCCTGCTTTAGAGGCA+TGG | 0.494678 | 2_4:+55397237 | Msa0336110:CDS |
| TTGCAATGCTGATTTAATAG+AGG | 0.498526 | 2_4:+55397267 | Msa0336110:CDS |
| TCAAGTTGAGGTCAGCATCA+TGG | 0.500463 | 2_4:-55396324 | None:intergenic |
| AATTGTGGTAAATGTAAGGT+TGG | 0.511853 | 2_4:+55397928 | Msa0336110:CDS |
| ATTGTCGAAAGAGCACGAAA+TGG | 0.515021 | 2_4:+55398341 | Msa0336110:CDS |
| AAAGGGTGATGAGGAAGAAG+TGG | 0.516259 | 2_4:-55396655 | None:intergenic |
| TGATGATGAGTTGCCATAGA+AGG | 0.520762 | 2_4:-55396771 | None:intergenic |
| GAAAAGTGGTCACAATTCAA+TGG | 0.522775 | 2_4:-55396021 | None:intergenic |
| TGAATTGATCGATTTGGTTG+CGG | 0.523191 | 2_4:-55398098 | None:intergenic |
| ATTTCTTTCTTCTCTTTGAA+GGG | 0.523776 | 2_4:-55396840 | None:intergenic |
| TTGAGGTACATTGATGGGGA+AGG | 0.529666 | 2_4:+55399164 | Msa0336110:CDS |
| GAGCAGCATGCCCCTCATCT+TGG | 0.529885 | 2_4:+55398050 | Msa0336110:CDS |
| ACAAGTAGAGGAAATGAAAA+GGG | 0.531779 | 2_4:+55398434 | Msa0336110:CDS |
| CCATCATCTTACCAAAACAT+TGG | 0.532650 | 2_4:+55396294 | Msa0336110:five_prime_UTR |
| AGATGATAAAGAAGAAAATG+AGG | 0.536416 | 2_4:+55399058 | Msa0336110:CDS |
| GAAGCTTTAAGTTGATTGAG+AGG | 0.539320 | 2_4:-55396103 | None:intergenic |
| AAAACTTGCTGCTACACTAT+GGG | 0.545934 | 2_4:+55396878 | Msa0336110:CDS |
| AACTCCTTCAAGGATCAAGA+AGG | 0.548905 | 2_4:+55396914 | Msa0336110:CDS |
| TACATCGAAGAAGCTTCTAA+AGG | 0.556003 | 2_4:+55397990 | Msa0336110:CDS |
| GATGAATTAGCCAAAGGTGT+TGG | 0.559281 | 2_4:+55398399 | Msa0336110:CDS |
| GGGTGATGAGGAAGAAGTGG+AGG | 0.560109 | 2_4:-55396652 | None:intergenic |
| AAGCTTTAAGTTGATTGAGA+GGG | 0.564192 | 2_4:-55396102 | None:intergenic |
| GTACATTGATGGGGAAGGAG+AGG | 0.569685 | 2_4:+55399169 | Msa0336110:CDS |
| TTGAATTTGAGAAGAAGCTG+AGG | 0.575256 | 2_4:+55398250 | Msa0336110:CDS |
| CCAAAACGCAAGAAGAATTG+TGG | 0.584387 | 2_4:+55397913 | Msa0336110:CDS |
| ACAATACACCAGCACCTATG+TGG | 0.587966 | 2_4:+55396730 | Msa0336110:CDS |
| GATGATAAAGAAGAAAATGA+GGG | 0.588141 | 2_4:+55399059 | Msa0336110:CDS |
| ATTGCTAAGAATTGCGATCG+CGG | 0.593962 | 2_4:+55396452 | Msa0336110:five_prime_UTR |
| GGGAAGTATTTGCTTCAACA+AGG | 0.595449 | 2_4:+55398923 | Msa0336110:CDS |
| AGAAGATAGATCACAAGTAG+AGG | 0.595577 | 2_4:+55398422 | Msa0336110:CDS |
| GAGTTTGAGGTACATTGATG+GGG | 0.599467 | 2_4:+55399160 | Msa0336110:CDS |
| CGTTACTCATAGCCAAGATG+AGG | 0.599564 | 2_4:-55398062 | None:intergenic |
| GAAAATGCCCTGGCTTTGGA+GGG | 0.600285 | 2_4:+55399191 | Msa0336110:CDS |
| TCTTCTTGAAAAGGGTGATG+AGG | 0.600996 | 2_4:-55396664 | None:intergenic |
| GGAAGGAGAGGAAAATGCCC+TGG | 0.603191 | 2_4:+55399181 | Msa0336110:CDS |
| AATTTGAGAAGAAGCTGAGG+AGG | 0.604179 | 2_4:+55398253 | Msa0336110:CDS |
| TCTGAGAAAGGACTAACCAA+TGG | 0.604769 | 2_4:-55397017 | None:intergenic |
| AGGAAAGAGACAAAGTTGAG+AGG | 0.605019 | 2_4:+55396955 | Msa0336110:CDS |
| GTTACTCATAGCCAAGATGA+GGG | 0.620249 | 2_4:-55398061 | None:intergenic |
| GCATCCATGCCTCTAAAGCA+GGG | 0.626695 | 2_4:-55397241 | None:intergenic |
| ATGACATTGATGTTAATCCA+GGG | 0.627474 | 2_4:+55398649 | Msa0336110:CDS |
| ATCATGTCCCTCCAAAGCCA+GGG | 0.630793 | 2_4:-55399198 | None:intergenic |
| GTTTGTGGGAGTTCAAGTTG+AGG | 0.632927 | 2_4:-55396336 | None:intergenic |
| ATTGGTTAGTCCTTTCTCAG+AGG | 0.645866 | 2_4:+55397019 | Msa0336110:CDS |
| GTTCGTGATGAATTAGCCAA+AGG | 0.668671 | 2_4:+55398393 | Msa0336110:CDS |
| CATAACAAGATCAGAAAACG+AGG | 0.678416 | 2_4:+55396624 | Msa0336110:CDS |
| CGTCTTAAGGAAGCTAAAAG+CGG | 0.687525 | 2_4:+55397961 | Msa0336110:CDS |
| TTACTCATAGCCAAGATGAG+GGG | 0.694561 | 2_4:-55398060 | None:intergenic |
| AGAAAGAGAGAAGATTCGCG+AGG | 0.695830 | 2_4:+55398203 | Msa0336110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAAGTTTTTATAAAAAAAA+AGG | - | chr2_4:55396479-55396498 | None:intergenic | 10.0% |
| !! | ATTTGTAAAAAAAAAAAAAC+AGG | - | chr2_4:55397128-55397147 | None:intergenic | 10.0% |
| !!! | TTTTTTTACAAATATGATTA+AGG | + | chr2_4:55397135-55397154 | Msa0336110:intron | 10.0% |
| !! | AATATAATCAATTAGAAATT+TGG | + | chr2_4:55397304-55397323 | Msa0336110:intron | 10.0% |
| !! | TTAGTTAATCTAATAAAAAA+TGG | - | chr2_4:55397368-55397387 | None:intergenic | 10.0% |
| !!! | AAATCAATTGAATTTATTTT+TGG | + | chr2_4:55399023-55399042 | Msa0336110:CDS | 10.0% |
| !!! | GATTTTTCAATTTTTTTTAT+AGG | + | chr2_4:55399254-55399273 | Msa0336110:three_prime_UTR | 10.0% |
| !! | CTCAAATTTATAAGATTTAT+TGG | - | chr2_4:55396530-55396549 | None:intergenic | 15.0% |
| !! | AATATATATCTTCTTGAAAA+GGG | - | chr2_4:55396675-55396694 | None:intergenic | 15.0% |
| !! | AAATATATATCTTCTTGAAA+AGG | - | chr2_4:55396676-55396695 | None:intergenic | 15.0% |
| !! | AAAAGTTAGTTATAATAGTT+CGG | + | chr2_4:55397629-55397648 | Msa0336110:intron | 15.0% |
| !!! | CATCTATACTTATTTATTTT+TGG | + | chr2_4:55397833-55397852 | Msa0336110:intron | 15.0% |
| !! | TTTCAATTGATAAAGATATA+GGG | + | chr2_4:55398880-55398899 | Msa0336110:CDS | 15.0% |
| !!! | ATTTAAAATCATTTGAGGTT+AGG | - | chr2_4:55396402-55396421 | None:intergenic | 20.0% |
| !! | AATAAACTTTGTTAGTTCAA+TGG | + | chr2_4:55397090-55397109 | Msa0336110:intron | 20.0% |
| !! | TTGATAAGTGAAAAGTAAAA+TGG | - | chr2_4:55397771-55397790 | None:intergenic | 20.0% |
| !!! | TACTTATTTATTTTTGGTCA+CGG | + | chr2_4:55397839-55397858 | Msa0336110:intron | 20.0% |
| !!! | CTATTTGAACAAAACATTTT+TGG | + | chr2_4:55398698-55398717 | Msa0336110:CDS | 20.0% |
| !! | TCAATCTATTGAATTGAATA+TGG | + | chr2_4:55398788-55398807 | Msa0336110:CDS | 20.0% |
| !! | GTTTCAATTGATAAAGATAT+AGG | + | chr2_4:55398879-55398898 | Msa0336110:CDS | 20.0% |
| !! | TACAAATAGTACTAAAAAGA+AGG | + | chr2_4:55398950-55398969 | Msa0336110:CDS | 20.0% |
| !!! | GTGTTAGTATTTATTTTTCA+TGG | + | chr2_4:55399319-55399338 | Msa0336110:three_prime_UTR | 20.0% |
| ! | TATATTGGAAGATACGTTAA+GGG | - | chr2_4:55396142-55396161 | None:intergenic | 25.0% |
| ! | ATATATTGGAAGATACGTTA+AGG | - | chr2_4:55396143-55396162 | None:intergenic | 25.0% |
| !! | TCATGTATACTTGTTCTTTT+TGG | - | chr2_4:55396232-55396251 | None:intergenic | 25.0% |
| !! | CTGCAATTTAAAATCATTTG+AGG | - | chr2_4:55396407-55396426 | None:intergenic | 25.0% |
| !! | ATGATTTTAAATTGCAGTTG+CGG | + | chr2_4:55396410-55396429 | Msa0336110:five_prime_UTR | 25.0% |
| ! | ATTTCTTTCTTCTCTTTGAA+GGG | - | chr2_4:55396843-55396862 | None:intergenic | 25.0% |
| ! | AATTTCTTTCTTCTCTTTGA+AGG | - | chr2_4:55396844-55396863 | None:intergenic | 25.0% |
| ! | GGAATCAATGAAAAGTAATA+AGG | + | chr2_4:55396935-55396954 | Msa0336110:CDS | 25.0% |
| ! | TAATATGTTGAGTGTATGTT+TGG | - | chr2_4:55397601-55397620 | None:intergenic | 25.0% |
| ! | ATACTCAATATTGTTCTGAT+TGG | - | chr2_4:55398139-55398158 | None:intergenic | 25.0% |
| !! | TTTTATGTTCTCCATTTCTT+TGG | - | chr2_4:55398307-55398326 | None:intergenic | 25.0% |
| ! | TTTCTCTTCAAATTGATACT+TGG | - | chr2_4:55398559-55398578 | None:intergenic | 25.0% |
| ! | AGAAATAAAGAAGAAGAGAA+AGG | + | chr2_4:55398624-55398643 | Msa0336110:CDS | 25.0% |
| ! | ATGACAAAAAAAGTTACAAG+TGG | + | chr2_4:55398814-55398833 | Msa0336110:CDS | 25.0% |
| !!! | GAGAAGATCTTTTAAAGATT+GGG | + | chr2_4:55398902-55398921 | Msa0336110:CDS | 25.0% |
| !!! | AGAAGATCTTTTAAAGATTG+GGG | + | chr2_4:55398903-55398922 | Msa0336110:CDS | 25.0% |
| ! | AGATGATAAAGAAGAAAATG+AGG | + | chr2_4:55399058-55399077 | Msa0336110:CDS | 25.0% |
| ! | GATGATAAAGAAGAAAATGA+GGG | + | chr2_4:55399059-55399078 | Msa0336110:CDS | 25.0% |
| ! | CAAAATCTGGAAATGATATA+TGG | - | chr2_4:55399118-55399137 | None:intergenic | 25.0% |
| GAAGAAGATATGAAGAAAAG+TGG | - | chr2_4:55396038-55396057 | None:intergenic | 30.0% | |
| !! | AAGCTTTAAGTTGATTGAGA+GGG | - | chr2_4:55396105-55396124 | None:intergenic | 30.0% |
| AGCGTATTTGAATGTGTAAA+GGG | - | chr2_4:55396199-55396218 | None:intergenic | 30.0% | |
| TAGCGTATTTGAATGTGTAA+AGG | - | chr2_4:55396200-55396219 | None:intergenic | 30.0% | |
| ACATTCAAATACGCTATTCT+AGG | + | chr2_4:55396204-55396223 | Msa0336110:five_prime_UTR | 30.0% | |
| CATTCAAATACGCTATTCTA+GGG | + | chr2_4:55396205-55396224 | Msa0336110:five_prime_UTR | 30.0% | |
| CATTGAAGTTAGTGTAAAGT+GGG | - | chr2_4:55396265-55396284 | None:intergenic | 30.0% | |
| ! | ATGGGATTTTTCCAATGTTT+TGG | - | chr2_4:55396308-55396327 | None:intergenic | 30.0% |
| ! | AAAATCATTTGAGGTTAGGA+AGG | - | chr2_4:55396398-55396417 | None:intergenic | 30.0% |
| !! | ATTTAAGAGAGCCATTTTGA+TGG | + | chr2_4:55396692-55396711 | Msa0336110:CDS | 30.0% |
| !! | TTTAAGAGAGCCATTTTGAT+GGG | + | chr2_4:55396693-55396712 | Msa0336110:CDS | 30.0% |
| !! | TTTGAACTTGTTTTCCACAT+AGG | - | chr2_4:55396747-55396766 | None:intergenic | 30.0% |
| TCAATGATTTAACTCCTTCA+AGG | + | chr2_4:55396904-55396923 | Msa0336110:CDS | 30.0% | |
| ! | TTATGTAGATCAGTGTTGTT+GGG | + | chr2_4:55396978-55396997 | Msa0336110:CDS | 30.0% |
| !! | ACAAAAGGTATTGAAGTTGA+TGG | + | chr2_4:55397169-55397188 | Msa0336110:CDS | 30.0% |
| !! | TTGCAATGCTGATTTAATAG+AGG | + | chr2_4:55397267-55397286 | Msa0336110:CDS | 30.0% |
| TTAGAGCTTCAACAAAATCA+CGG | + | chr2_4:55397543-55397562 | Msa0336110:intron | 30.0% | |
| GTATCACTATTCTTGATAGA+AGG | - | chr2_4:55397796-55397815 | None:intergenic | 30.0% | |
| GAAGAATTGTGGTAAATGTA+AGG | + | chr2_4:55397924-55397943 | Msa0336110:CDS | 30.0% | |
| AATTGTGGTAAATGTAAGGT+TGG | + | chr2_4:55397928-55397947 | Msa0336110:CDS | 30.0% | |
| CTTGAATGAATTGATCGATT+TGG | - | chr2_4:55398107-55398126 | None:intergenic | 30.0% | |
| CATGAAGATTTCCAAAGAAA+TGG | + | chr2_4:55398293-55398312 | Msa0336110:CDS | 30.0% | |
| ! | CTCTTTCGACAATTTTGAAT+AGG | - | chr2_4:55398334-55398353 | None:intergenic | 30.0% |
| ACAAGTAGAGGAAATGAAAA+GGG | + | chr2_4:55398434-55398453 | Msa0336110:CDS | 30.0% | |
| AATTCGAGAAGAAGTTGAAA+AGG | + | chr2_4:55398467-55398486 | Msa0336110:CDS | 30.0% | |
| ATGACATTGATGTTAATCCA+GGG | + | chr2_4:55398649-55398668 | Msa0336110:CDS | 30.0% | |
| !!! | TGAGAATATTCCACTTTTTG+AGG | + | chr2_4:55398848-55398867 | Msa0336110:CDS | 30.0% |
| !! | GGAGAAGATCTTTTAAAGAT+TGG | + | chr2_4:55398901-55398920 | Msa0336110:CDS | 30.0% |
| ACTAAAAAGAAGGACTTTGA+TGG | + | chr2_4:55398960-55398979 | Msa0336110:CDS | 30.0% | |
| TAGACTCATAATAGGCTTAT+AGG | - | chr2_4:55399090-55399109 | None:intergenic | 30.0% | |
| CCACTTTCTTTATCAAAATC+TGG | - | chr2_4:55399131-55399150 | None:intergenic | 30.0% | |
| !! | CCAGATTTTGATAAAGAAAG+TGG | + | chr2_4:55399128-55399147 | Msa0336110:CDS | 30.0% |
| TTGTGCACGAAGAAAATAAA+AGG | + | chr2_4:55399232-55399251 | Msa0336110:exon | 30.0% | |
| GAAAAGTGGTCACAATTCAA+TGG | - | chr2_4:55396024-55396043 | None:intergenic | 35.0% | |
| !! | TTAAGTTGATTGAGAGGGAA+AGG | - | chr2_4:55396100-55396119 | None:intergenic | 35.0% |
| !! | GAAGCTTTAAGTTGATTGAG+AGG | - | chr2_4:55396106-55396125 | None:intergenic | 35.0% |
| ! | CGTTAAGGGTTAGCAATAAA+TGG | - | chr2_4:55396128-55396147 | None:intergenic | 35.0% |
| GGGAATCTGTCAACATATAT+TGG | - | chr2_4:55396157-55396176 | None:intergenic | 35.0% | |
| !!! | TTGACAGATTCCCACTTTTT+TGG | + | chr2_4:55396164-55396183 | Msa0336110:five_prime_UTR | 35.0% |
| GATTTGAGGACCAAAAAAGT+GGG | - | chr2_4:55396177-55396196 | None:intergenic | 35.0% | |
| TGAATGTGTAAAGGGATTTG+AGG | - | chr2_4:55396191-55396210 | None:intergenic | 35.0% | |
| GCATTGAAGTTAGTGTAAAG+TGG | - | chr2_4:55396266-55396285 | None:intergenic | 35.0% | |
| !!! | CCAATGTTTTGGTAAGATGA+TGG | - | chr2_4:55396297-55396316 | None:intergenic | 35.0% |
| CCATCATCTTACCAAAACAT+TGG | + | chr2_4:55396294-55396313 | Msa0336110:five_prime_UTR | 35.0% | |
| !! | TTTATGAGAGGAGTGTTTGT+GGG | - | chr2_4:55396353-55396372 | None:intergenic | 35.0% |
| !!! | TTTTATGAGAGGAGTGTTTG+TGG | - | chr2_4:55396354-55396373 | None:intergenic | 35.0% |
| !! | GGATGCAAAAGTTTTATGAG+AGG | - | chr2_4:55396365-55396384 | None:intergenic | 35.0% |
| CATAACAAGATCAGAAAACG+AGG | + | chr2_4:55396624-55396643 | Msa0336110:CDS | 35.0% | |
| !! | TTAAGAGAGCCATTTTGATG+GGG | + | chr2_4:55396694-55396713 | Msa0336110:CDS | 35.0% |
| ! | ACTTTTCTTCCCCATCAAAA+TGG | - | chr2_4:55396706-55396725 | None:intergenic | 35.0% |
| !! | ATTTTGATGGGGAAGAAAAG+TGG | + | chr2_4:55396705-55396724 | Msa0336110:CDS | 35.0% |
| ! | TTTTGATGGGGAAGAAAAGT+GGG | + | chr2_4:55396706-55396725 | Msa0336110:CDS | 35.0% |
| AAGTTCAAAGTCACCTTCTA+TGG | + | chr2_4:55396758-55396777 | Msa0336110:CDS | 35.0% | |
| !!! | AAGCTGTGTTTTTTGTAGCA+TGG | - | chr2_4:55396797-55396816 | None:intergenic | 35.0% |
| !! | AAAACTTGCTGCTACACTAT+GGG | + | chr2_4:55396878-55396897 | Msa0336110:CDS | 35.0% |
| GTTATGTAGATCAGTGTTGT+TGG | + | chr2_4:55396977-55396996 | Msa0336110:CDS | 35.0% | |
| ACCACAAAAGTTAGATCCAT+TGG | + | chr2_4:55397001-55397020 | Msa0336110:CDS | 35.0% | |
| ! | ACCAATGGATCTAACTTTTG+TGG | - | chr2_4:55397005-55397024 | None:intergenic | 35.0% |
| ! | TTGTGATTTACCTCTGAGAA+AGG | - | chr2_4:55397032-55397051 | None:intergenic | 35.0% |
| AAGGTAAAGCAGAGAACAAA+AGG | + | chr2_4:55397154-55397173 | Msa0336110:intron | 35.0% | |
| !! | TGTTGACTTTGATTGTCACA+CGG | + | chr2_4:55397454-55397473 | Msa0336110:intron | 35.0% |
| ! | TTTGATTGTCACACGGTTTT+TGG | + | chr2_4:55397461-55397480 | Msa0336110:intron | 35.0% |
| TACATCGAAGAAGCTTCTAA+AGG | + | chr2_4:55397990-55398009 | Msa0336110:CDS | 35.0% | |
| !! | TGAATTGATCGATTTGGTTG+CGG | - | chr2_4:55398101-55398120 | None:intergenic | 35.0% |
| !! | TCTCATGAAGCATTTTGAAG+AGG | + | chr2_4:55398158-55398177 | Msa0336110:CDS | 35.0% |
| TTGAAGAGGAAAAGATTGCT+TGG | + | chr2_4:55398172-55398191 | Msa0336110:CDS | 35.0% | |
| TTGAATTTGAGAAGAAGCTG+AGG | + | chr2_4:55398250-55398269 | Msa0336110:CDS | 35.0% | |
| ! | GAAAAGGGCTAAAGAGATTT+TGG | + | chr2_4:55398365-55398384 | Msa0336110:CDS | 35.0% |
| AGAAGATAGATCACAAGTAG+AGG | + | chr2_4:55398422-55398441 | Msa0336110:CDS | 35.0% | |
| CACAAGTAGAGGAAATGAAA+AGG | + | chr2_4:55398433-55398452 | Msa0336110:CDS | 35.0% | |
| GATGACATTGATGTTAATCC+AGG | + | chr2_4:55398648-55398667 | Msa0336110:CDS | 35.0% | |
| ! | ACTCTTTTTGCCTCAAAAAG+TGG | - | chr2_4:55398861-55398880 | None:intergenic | 35.0% |
| !! | AGTTTTGATCAGCTTGAAAG+TGG | + | chr2_4:55398999-55399018 | Msa0336110:CDS | 35.0% |
| TGGTCTCTTAGACTCATAAT+AGG | - | chr2_4:55399098-55399117 | None:intergenic | 35.0% | |
| !!! | GTGGTAAACTTTTGAGTTTG+AGG | + | chr2_4:55399147-55399166 | Msa0336110:CDS | 35.0% |
| ! | TTGAGTTTGAGGTACATTGA+TGG | + | chr2_4:55399158-55399177 | Msa0336110:CDS | 35.0% |
| ! | TGAGTTTGAGGTACATTGAT+GGG | + | chr2_4:55399159-55399178 | Msa0336110:CDS | 35.0% |
| GTCACAATTCAATGGCCATT+TGG | - | chr2_4:55396016-55396035 | None:intergenic | 40.0% | |
| GATTGAGAGGGAAAGGAAAA+GGG | - | chr2_4:55396093-55396112 | None:intergenic | 40.0% | |
| TGATTGAGAGGGAAAGGAAA+AGG | - | chr2_4:55396094-55396113 | None:intergenic | 40.0% | |
| GGATTTGAGGACCAAAAAAG+TGG | - | chr2_4:55396178-55396197 | None:intergenic | 40.0% | |
| !! | TTTGAGGTTAGGAAGGTGTT+TGG | - | chr2_4:55396391-55396410 | None:intergenic | 40.0% |
| ATTGCTAAGAATTGCGATCG+CGG | + | chr2_4:55396452-55396471 | Msa0336110:five_prime_UTR | 40.0% | |
| ! | AAGATGTTTTGTCTGACACG+AGG | - | chr2_4:55396595-55396614 | None:intergenic | 40.0% |
| TCTTCTTGAAAAGGGTGATG+AGG | - | chr2_4:55396667-55396686 | None:intergenic | 40.0% | |
| ! | TGATGATGAGTTGCCATAGA+AGG | - | chr2_4:55396774-55396793 | None:intergenic | 40.0% |
| !! | GAAAACTTGCTGCTACACTA+TGG | + | chr2_4:55396877-55396896 | Msa0336110:CDS | 40.0% |
| AACTCCTTCAAGGATCAAGA+AGG | + | chr2_4:55396914-55396933 | Msa0336110:CDS | 40.0% | |
| GATTCCTTCTTGATCCTTGA+AGG | - | chr2_4:55396921-55396940 | None:intergenic | 40.0% | |
| AGGAAAGAGACAAAGTTGAG+AGG | + | chr2_4:55396955-55396974 | Msa0336110:CDS | 40.0% | |
| TCTGAGAAAGGACTAACCAA+TGG | - | chr2_4:55397020-55397039 | None:intergenic | 40.0% | |
| ! | ATTGGTTAGTCCTTTCTCAG+AGG | + | chr2_4:55397019-55397038 | Msa0336110:CDS | 40.0% |
| TTTGTTGATCCCTGCTTTAG+AGG | + | chr2_4:55397232-55397251 | Msa0336110:CDS | 40.0% | |
| !! | CGTGTTTTTGCCAAATTCAC+CGG | + | chr2_4:55397574-55397593 | Msa0336110:intron | 40.0% |
| TATGTTTGGACCGGTGAATT+TGG | - | chr2_4:55397587-55397606 | None:intergenic | 40.0% | |
| TGTTGAGTGTATGTTTGGAC+CGG | - | chr2_4:55397596-55397615 | None:intergenic | 40.0% | |
| ACTGCATCAGTGCATACATA+AGG | - | chr2_4:55397722-55397741 | None:intergenic | 40.0% | |
| !!! | ATTTTTGGTCACGGTTGAGA+AGG | + | chr2_4:55397848-55397867 | Msa0336110:intron | 40.0% |
| ! | CCACAATTCTTCTTGCGTTT+TGG | - | chr2_4:55397916-55397935 | None:intergenic | 40.0% |
| CCAAAACGCAAGAAGAATTG+TGG | + | chr2_4:55397913-55397932 | Msa0336110:CDS | 40.0% | |
| !!! | CGCTTTTAGCTTCCTTAAGA+CGG | - | chr2_4:55397963-55397982 | None:intergenic | 40.0% |
| CGTCTTAAGGAAGCTAAAAG+CGG | + | chr2_4:55397961-55397980 | Msa0336110:CDS | 40.0% | |
| TTACTCATAGCCAAGATGAG+GGG | - | chr2_4:55398063-55398082 | None:intergenic | 40.0% | |
| GTTACTCATAGCCAAGATGA+GGG | - | chr2_4:55398064-55398083 | None:intergenic | 40.0% | |
| !! | GAATTGATCGATTTGGTTGC+GGG | - | chr2_4:55398100-55398119 | None:intergenic | 40.0% |
| AATTTGAGAAGAAGCTGAGG+AGG | + | chr2_4:55398253-55398272 | Msa0336110:CDS | 40.0% | |
| ! | ATTGTCGAAAGAGCACGAAA+TGG | + | chr2_4:55398341-55398360 | Msa0336110:CDS | 40.0% |
| ! | AAGAGCACGAAATGGAGAAA+AGG | + | chr2_4:55398349-55398368 | Msa0336110:CDS | 40.0% |
| AGAGCACGAAATGGAGAAAA+GGG | + | chr2_4:55398350-55398369 | Msa0336110:CDS | 40.0% | |
| GTTCGTGATGAATTAGCCAA+AGG | + | chr2_4:55398393-55398412 | Msa0336110:CDS | 40.0% | |
| ! | GATGAATTAGCCAAAGGTGT+TGG | + | chr2_4:55398399-55398418 | Msa0336110:CDS | 40.0% |
| TCTATCTTCTCCAACACCTT+TGG | - | chr2_4:55398412-55398431 | None:intergenic | 40.0% | |
| TCGTTCTTCGCGCAAAATAT+CGG | - | chr2_4:55398514-55398533 | None:intergenic | 40.0% | |
| TCCAGGGCTTAAAAAACTCA+AGG | + | chr2_4:55398665-55398684 | Msa0336110:CDS | 40.0% | |
| !!! | TCCTTGAGTTTTTTAAGCCC+TGG | - | chr2_4:55398669-55398688 | None:intergenic | 40.0% |
| !! | GGGAAGTATTTGCTTCAACA+AGG | + | chr2_4:55398923-55398942 | Msa0336110:CDS | 40.0% |
| ! | GAGTTTGAGGTACATTGATG+GGG | + | chr2_4:55399160-55399179 | Msa0336110:CDS | 40.0% |
| ! | CAAGTTGAGGTCAGCATCAT+GGG | - | chr2_4:55396326-55396345 | None:intergenic | 45.0% |
| !! | TCAAGTTGAGGTCAGCATCA+TGG | - | chr2_4:55396327-55396346 | None:intergenic | 45.0% |
| !! | GTTTGTGGGAGTTCAAGTTG+AGG | - | chr2_4:55396339-55396358 | None:intergenic | 45.0% |
| !! | GGTTAGGAAGGTGTTTGGTT+TGG | - | chr2_4:55396386-55396405 | None:intergenic | 45.0% |
| TGTCTGACACGAGGACATAA+TGG | - | chr2_4:55396586-55396605 | None:intergenic | 45.0% | |
| AAAGGGTGATGAGGAAGAAG+TGG | - | chr2_4:55396658-55396677 | None:intergenic | 45.0% | |
| ACAATACACCAGCACCTATG+TGG | + | chr2_4:55396730-55396749 | Msa0336110:CDS | 45.0% | |
| !! | CTTGTTTTCCACATAGGTGC+TGG | - | chr2_4:55396741-55396760 | None:intergenic | 45.0% |
| GCTTTGCATTCTTCACGTTC+TGG | + | chr2_4:55396813-55396832 | Msa0336110:CDS | 45.0% | |
| TGGAGTCAAGAACCGTCTTA+AGG | + | chr2_4:55397948-55397967 | Msa0336110:CDS | 45.0% | |
| CGTTACTCATAGCCAAGATG+AGG | - | chr2_4:55398065-55398084 | None:intergenic | 45.0% | |
| AGAAAGAGAGAAGATTCGCG+AGG | + | chr2_4:55398203-55398222 | Msa0336110:CDS | 45.0% | |
| ! | TGGCTTCTGAGAGCTTCATA+TGG | - | chr2_4:55398539-55398558 | None:intergenic | 45.0% |
| TTGAGGTACATTGATGGGGA+AGG | + | chr2_4:55399164-55399183 | Msa0336110:CDS | 45.0% | |
| !!! | ATTTTTCAATTTTTTTTATA+GGG | + | chr2_4:55399255-55399274 | Msa0336110:three_prime_UTR | 5.0% |
| !! | TGATCCCTGCTTTAGAGGCA+TGG | + | chr2_4:55397237-55397256 | Msa0336110:CDS | 50.0% |
| !! | GCATCCATGCCTCTAAAGCA+GGG | - | chr2_4:55397244-55397263 | None:intergenic | 50.0% |
| !! | AGCATCCATGCCTCTAAAGC+AGG | - | chr2_4:55397245-55397264 | None:intergenic | 50.0% |
| !! | TGCTTTAGAGGCATGGATGC+TGG | + | chr2_4:55397244-55397263 | Msa0336110:CDS | 50.0% |
| GTACATTGATGGGGAAGGAG+AGG | + | chr2_4:55399169-55399188 | Msa0336110:CDS | 50.0% | |
| AGAGGAAAATGCCCTGGCTT+TGG | + | chr2_4:55399187-55399206 | Msa0336110:CDS | 50.0% | |
| !! | GAAAATGCCCTGGCTTTGGA+GGG | + | chr2_4:55399191-55399210 | Msa0336110:CDS | 50.0% |
| ATCATGTCCCTCCAAAGCCA+GGG | - | chr2_4:55399201-55399220 | None:intergenic | 50.0% | |
| TATCATGTCCCTCCAAAGCC+AGG | - | chr2_4:55399202-55399221 | None:intergenic | 50.0% | |
| GGGTGATGAGGAAGAAGTGG+AGG | - | chr2_4:55396655-55396674 | None:intergenic | 55.0% | |
| GGAAGGAGAGGAAAATGCCC+TGG | + | chr2_4:55399181-55399200 | Msa0336110:CDS | 55.0% | |
| !! | GGAAAATGCCCTGGCTTTGG+AGG | + | chr2_4:55399190-55399209 | Msa0336110:CDS | 55.0% |
| GAGCAGCATGCCCCTCATCT+TGG | + | chr2_4:55398050-55398069 | Msa0336110:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 55396003 | 55399379 | 55396003 | ID=Msa0336110;Name=Msa0336110 |
| chr2_4 | mRNA | 55396003 | 55399379 | 55396003 | ID=Msa0336110-mRNA-1;Parent=Msa0336110;Name=Msa0336110-mRNA-1;_AED=0.02;_eAED=0.02;_QI=585|1|1|1|1|1|3|129|645 |
| chr2_4 | exon | 55396003 | 55397040 | 55396003 | ID=Msa0336110-mRNA-1:exon:16806;Parent=Msa0336110-mRNA-1 |
| chr2_4 | exon | 55397157 | 55397288 | 55397157 | ID=Msa0336110-mRNA-1:exon:16807;Parent=Msa0336110-mRNA-1 |
| chr2_4 | exon | 55397898 | 55399379 | 55397898 | ID=Msa0336110-mRNA-1:exon:16808;Parent=Msa0336110-mRNA-1 |
| chr2_4 | five_prime_UTR | 55396003 | 55396587 | 55396003 | ID=Msa0336110-mRNA-1:five_prime_utr;Parent=Msa0336110-mRNA-1 |
| chr2_4 | CDS | 55396588 | 55397040 | 55396588 | ID=Msa0336110-mRNA-1:cds;Parent=Msa0336110-mRNA-1 |
| chr2_4 | CDS | 55397157 | 55397288 | 55397157 | ID=Msa0336110-mRNA-1:cds;Parent=Msa0336110-mRNA-1 |
| chr2_4 | CDS | 55397898 | 55399250 | 55397898 | ID=Msa0336110-mRNA-1:cds;Parent=Msa0336110-mRNA-1 |
| chr2_4 | three_prime_UTR | 55399251 | 55399379 | 55399251 | ID=Msa0336110-mRNA-1:three_prime_utr;Parent=Msa0336110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
