Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260650 | AES68053.1 | 80.660 | 212 | 15 | 6 | 1 | 208 | 1 | 190 | 9.54e-100 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260650 | sp|P93830|IAA17_ARATH | 45.116 | 215 | 87 | 8 | 24 | 210 | 9 | 220 | 3.38e-51 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260650 | G7IMD8 | 80.660 | 212 | 15 | 6 | 1 | 208 | 1 | 190 | 4.56e-100 | 298 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0260650 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094160 | Msa0260650 | 0.874054 | 9.110701e-68 | -8.615850e-47 |
| Msa0225780 | Msa0260650 | 0.939345 | 1.485162e-99 | -8.615850e-47 |
| Msa0260590 | Msa0260650 | 0.970818 | 3.376285e-132 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260650 | MtrunA17_Chr2g0332141 | 91.667 | 120 | 10 | 0 | 102 | 221 | 4 | 123 | 2.58e-80 | 236 |
| Msa0260650 | MtrunA17_Chr1g0190711 | 42.793 | 222 | 83 | 7 | 24 | 202 | 17 | 237 | 1.85e-48 | 159 |
| Msa0260650 | MtrunA17_Chr6g0486121 | 39.224 | 232 | 91 | 9 | 17 | 202 | 11 | 238 | 2.94e-46 | 154 |
| Msa0260650 | MtrunA17_Chr1g0184791 | 42.793 | 222 | 79 | 11 | 23 | 202 | 14 | 229 | 1.38e-44 | 149 |
| Msa0260650 | MtrunA17_Chr1g0187921 | 43.056 | 216 | 81 | 8 | 24 | 202 | 10 | 220 | 2.54e-44 | 148 |
| Msa0260650 | MtrunA17_Chr7g0260641 | 41.850 | 227 | 79 | 9 | 24 | 202 | 13 | 234 | 1.08e-43 | 147 |
| Msa0260650 | MtrunA17_Chr8g0390281 | 45.122 | 164 | 63 | 4 | 63 | 202 | 117 | 277 | 5.02e-41 | 141 |
| Msa0260650 | MtrunA17_Chr1g0187961 | 43.617 | 188 | 71 | 7 | 24 | 202 | 13 | 174 | 1.39e-40 | 137 |
| Msa0260650 | MtrunA17_Chr1g0166011 | 40.741 | 189 | 83 | 6 | 27 | 202 | 6 | 178 | 1.04e-39 | 134 |
| Msa0260650 | MtrunA17_Chr5g0428141 | 43.787 | 169 | 69 | 6 | 73 | 219 | 183 | 347 | 7.25e-39 | 137 |
| Msa0260650 | MtrunA17_Chr1g0184801 | 39.796 | 196 | 89 | 5 | 24 | 202 | 14 | 197 | 9.19e-39 | 133 |
| Msa0260650 | MtrunA17_Chr7g0260621 | 41.089 | 202 | 77 | 8 | 25 | 202 | 14 | 197 | 3.21e-38 | 131 |
| Msa0260650 | MtrunA17_Chr5g0411501 | 39.655 | 174 | 76 | 5 | 68 | 216 | 163 | 332 | 2.30e-37 | 132 |
| Msa0260650 | MtrunA17_Chr2g0331411 | 39.691 | 194 | 78 | 6 | 51 | 219 | 147 | 326 | 4.09e-37 | 132 |
| Msa0260650 | MtrunA17_Chr8g0366881 | 41.139 | 158 | 65 | 5 | 83 | 216 | 192 | 345 | 4.05e-35 | 127 |
| Msa0260650 | MtrunA17_Chr4g0004181 | 38.660 | 194 | 88 | 6 | 24 | 214 | 8 | 173 | 1.05e-30 | 111 |
| Msa0260650 | MtrunA17_Chr2g0330951 | 32.515 | 163 | 68 | 2 | 82 | 202 | 92 | 254 | 7.23e-22 | 90.5 |
| Msa0260650 | MtrunA17_Chr8g0340731 | 34.078 | 179 | 79 | 5 | 61 | 202 | 84 | 260 | 9.29e-22 | 90.5 |
| Msa0260650 | MtrunA17_Chr1g0183251 | 41.667 | 108 | 54 | 2 | 106 | 204 | 147 | 254 | 1.39e-20 | 87.4 |
| Msa0260650 | MtrunA17_Chr4g0069561 | 33.083 | 133 | 72 | 4 | 70 | 197 | 58 | 178 | 1.53e-19 | 82.4 |
| Msa0260650 | MtrunA17_Chr1g0193861 | 30.328 | 122 | 69 | 3 | 81 | 197 | 58 | 168 | 3.19e-14 | 68.2 |
| Msa0260650 | MtrunA17_Chr7g0270851 | 33.663 | 101 | 59 | 2 | 97 | 197 | 61 | 153 | 5.31e-14 | 67.4 |
| Msa0260650 | MtrunA17_Chr4g0064131 | 31.915 | 141 | 62 | 4 | 77 | 200 | 83 | 206 | 9.37e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260650 | AT1G04250.1 | 45.116 | 215 | 87 | 8 | 24 | 210 | 9 | 220 | 3.44e-52 | 168 |
| Msa0260650 | AT4G14550.1 | 44.651 | 215 | 78 | 8 | 24 | 202 | 3 | 212 | 2.78e-50 | 163 |
| Msa0260650 | AT4G14550.2 | 44.651 | 215 | 78 | 8 | 24 | 202 | 3 | 212 | 4.48e-50 | 163 |
| Msa0260650 | AT3G04730.1 | 42.986 | 221 | 80 | 7 | 24 | 202 | 4 | 220 | 2.69e-47 | 156 |
| Msa0260650 | AT3G23050.1 | 43.498 | 223 | 78 | 9 | 24 | 202 | 8 | 226 | 1.58e-45 | 152 |
| Msa0260650 | AT4G14550.3 | 42.424 | 198 | 73 | 8 | 24 | 185 | 3 | 195 | 2.98e-40 | 137 |
| Msa0260650 | AT1G04240.1 | 40.212 | 189 | 89 | 5 | 24 | 202 | 7 | 181 | 7.01e-39 | 133 |
| Msa0260650 | AT3G23030.1 | 41.304 | 184 | 84 | 7 | 19 | 202 | 7 | 166 | 1.80e-38 | 131 |
| Msa0260650 | AT4G29080.1 | 35.521 | 259 | 89 | 8 | 18 | 202 | 35 | 289 | 4.01e-38 | 134 |
| Msa0260650 | AT3G23030.2 | 41.304 | 184 | 84 | 7 | 19 | 202 | 94 | 253 | 1.04e-37 | 132 |
| Msa0260650 | AT5G43700.1 | 38.503 | 187 | 85 | 6 | 24 | 202 | 13 | 177 | 1.31e-37 | 129 |
| Msa0260650 | AT1G04240.2 | 40.212 | 189 | 89 | 5 | 24 | 202 | 107 | 281 | 1.48e-37 | 132 |
| Msa0260650 | AT3G23050.2 | 39.623 | 212 | 70 | 9 | 24 | 186 | 8 | 210 | 1.21e-35 | 125 |
| Msa0260650 | AT3G15540.1 | 39.109 | 202 | 86 | 9 | 24 | 208 | 8 | 189 | 6.55e-35 | 123 |
| Msa0260650 | AT5G65670.1 | 44.604 | 139 | 54 | 5 | 82 | 198 | 179 | 316 | 7.19e-35 | 127 |
| Msa0260650 | AT5G65670.2 | 42.038 | 157 | 67 | 6 | 82 | 216 | 179 | 333 | 7.68e-35 | 126 |
| Msa0260650 | AT2G22670.5 | 36.946 | 203 | 91 | 7 | 32 | 209 | 119 | 309 | 1.77e-34 | 125 |
| Msa0260650 | AT2G22670.2 | 36.946 | 203 | 91 | 7 | 32 | 209 | 119 | 309 | 1.77e-34 | 125 |
| Msa0260650 | AT1G15580.1 | 40.110 | 182 | 67 | 6 | 24 | 198 | 10 | 156 | 2.22e-34 | 120 |
| Msa0260650 | AT1G52830.1 | 37.368 | 190 | 102 | 5 | 24 | 208 | 8 | 185 | 2.76e-34 | 121 |
| Msa0260650 | AT2G22670.3 | 36.735 | 196 | 88 | 6 | 32 | 202 | 119 | 303 | 1.11e-33 | 123 |
| Msa0260650 | AT2G22670.1 | 36.735 | 196 | 88 | 6 | 32 | 202 | 119 | 303 | 1.11e-33 | 123 |
| Msa0260650 | AT2G22670.4 | 36.735 | 196 | 88 | 6 | 32 | 202 | 136 | 320 | 1.49e-33 | 123 |
| Msa0260650 | AT4G14560.1 | 39.583 | 192 | 84 | 9 | 14 | 202 | 1 | 163 | 3.94e-33 | 117 |
| Msa0260650 | AT3G16500.1 | 33.188 | 229 | 104 | 7 | 19 | 202 | 28 | 252 | 5.80e-27 | 104 |
| Msa0260650 | AT3G16500.2 | 33.188 | 229 | 104 | 7 | 19 | 202 | 28 | 252 | 7.80e-27 | 103 |
| Msa0260650 | AT1G51950.1 | 31.481 | 216 | 105 | 4 | 25 | 202 | 40 | 250 | 3.11e-24 | 97.4 |
| Msa0260650 | AT4G14550.4 | 40.268 | 149 | 54 | 5 | 24 | 141 | 3 | 147 | 5.34e-23 | 92.0 |
| Msa0260650 | AT2G33310.2 | 37.838 | 148 | 81 | 5 | 65 | 204 | 85 | 229 | 2.25e-22 | 92.0 |
| Msa0260650 | AT2G33310.3 | 37.838 | 148 | 81 | 5 | 65 | 204 | 84 | 228 | 2.35e-22 | 91.7 |
| Msa0260650 | AT2G33310.1 | 37.838 | 148 | 81 | 5 | 65 | 204 | 84 | 228 | 2.35e-22 | 91.7 |
| Msa0260650 | AT1G80390.1 | 45.378 | 119 | 43 | 5 | 27 | 139 | 19 | 121 | 7.50e-22 | 87.4 |
| Msa0260650 | AT3G17600.1 | 32.000 | 150 | 73 | 4 | 62 | 197 | 18 | 152 | 2.10e-21 | 87.0 |
| Msa0260650 | AT1G04550.2 | 29.897 | 194 | 80 | 7 | 50 | 202 | 41 | 219 | 7.80e-21 | 87.8 |
| Msa0260650 | AT5G25890.1 | 34.884 | 129 | 55 | 2 | 87 | 201 | 49 | 162 | 1.92e-20 | 85.1 |
| Msa0260650 | AT4G28640.3 | 34.667 | 150 | 65 | 3 | 86 | 202 | 88 | 237 | 2.73e-20 | 86.3 |
| Msa0260650 | AT4G28640.1 | 34.667 | 150 | 65 | 3 | 86 | 202 | 88 | 237 | 3.48e-20 | 85.9 |
| Msa0260650 | AT3G23050.3 | 36.875 | 160 | 53 | 6 | 24 | 141 | 8 | 161 | 2.15e-19 | 82.0 |
| Msa0260650 | AT4G28640.2 | 34.667 | 150 | 65 | 3 | 86 | 202 | 88 | 237 | 2.28e-19 | 84.7 |
| Msa0260650 | AT1G04100.1 | 40.952 | 105 | 48 | 3 | 107 | 201 | 154 | 254 | 1.05e-17 | 79.7 |
| Msa0260650 | AT3G62100.1 | 40.217 | 92 | 46 | 2 | 106 | 197 | 84 | 166 | 6.08e-16 | 73.2 |
| Msa0260650 | AT2G46990.1 | 37.634 | 93 | 47 | 2 | 106 | 197 | 86 | 168 | 2.93e-15 | 71.2 |
| Msa0260650 | AT4G32280.2 | 36.559 | 93 | 45 | 1 | 106 | 198 | 119 | 197 | 3.20e-14 | 69.3 |
| Msa0260650 | AT4G32280.1 | 36.559 | 93 | 45 | 1 | 106 | 198 | 161 | 239 | 8.69e-14 | 68.9 |
| Msa0260650 | AT3G62100.2 | 40.741 | 81 | 39 | 2 | 106 | 186 | 84 | 155 | 1.46e-11 | 60.8 |
| Msa0260650 | AT2G46990.2 | 39.024 | 82 | 39 | 2 | 106 | 186 | 86 | 157 | 2.48e-11 | 60.5 |
Find 75 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGGAGGACAATATTGATTT+TGG | 0.202496 | 2_2:-58382320 | Msa0260650:intron |
| CGTTCAAAGTTGTGTATATT+AGG | 0.211169 | 2_2:+58383448 | None:intergenic |
| GCTATAAAATGGACCGGGTT+TGG | 0.277811 | 2_2:-58382004 | Msa0260650:three_prime_UTR |
| AAAAGACTCTAGCTATAAAA+TGG | 0.286074 | 2_2:-58382015 | Msa0260650:three_prime_UTR |
| AACCAGGGGTGGTCTTTATT+AGG | 0.300336 | 2_2:-58381971 | Msa0260650:three_prime_UTR |
| TGAGCAAGTAATTGTCCATT+AGG | 0.316383 | 2_2:+58381829 | None:intergenic |
| GATGAATGAGAAGAAATTCA+TGG | 0.319723 | 2_2:-58382667 | Msa0260650:CDS |
| CTATAAAATGGACCGGGTTT+GGG | 0.321469 | 2_2:-58382003 | Msa0260650:three_prime_UTR |
| TTGAATCATGTAAGAGGATA+AGG | 0.340536 | 2_2:-58382355 | Msa0260650:CDS |
| CTTATTATTCGTACATTCAA+TGG | 0.347580 | 2_2:+58383342 | None:intergenic |
| TAATAAGATGAATATTATTC+AGG | 0.355657 | 2_2:-58383326 | Msa0260650:CDS |
| GGTTCTTACTTTGATGTTGT+TGG | 0.366642 | 2_2:+58383142 | None:intergenic |
| GTTCTTACTTTGATGTTGTT+GGG | 0.367350 | 2_2:+58383143 | None:intergenic |
| CTCACTGGAGGCCGTACATC+TGG | 0.369783 | 2_2:+58382183 | None:intergenic |
| GAGCTTACCCTTGGTCTTCC+CGG | 0.380531 | 2_2:-58383298 | Msa0260650:CDS |
| TACGTGAAAGTTGCGGTTGA+TGG | 0.380805 | 2_2:-58382950 | Msa0260650:CDS |
| GTTTGGGTGCAGTTGGAACC+AGG | 0.383484 | 2_2:-58381987 | Msa0260650:three_prime_UTR |
| TGAGAATGATTAGTTTCTAT+TGG | 0.397999 | 2_2:+58381788 | None:intergenic |
| TTGGGTGCAGTTGGAACCAG+GGG | 0.404325 | 2_2:-58381985 | Msa0260650:three_prime_UTR |
| GAGCAAGTAATTGTCCATTA+GGG | 0.435225 | 2_2:+58381830 | None:intergenic |
| CTTTGAGAAATGATTACATC+AGG | 0.440422 | 2_2:-58381913 | Msa0260650:three_prime_UTR |
| ATGGTGACTGGATGTTGCTT+GGG | 0.460851 | 2_2:-58382596 | Msa0260650:CDS |
| ACATGTGGTGGGATGGCCAC+CGG | 0.463192 | 2_2:-58383011 | Msa0260650:CDS |
| TATATAACTCAATGTGGTTA+CGG | 0.469542 | 2_2:+58383406 | None:intergenic |
| GGTGGGATGGCCACCGGTGA+GGG | 0.473868 | 2_2:-58383005 | Msa0260650:CDS |
| AATAGTATATAAAACCCTAA+TGG | 0.484093 | 2_2:-58381844 | Msa0260650:three_prime_UTR |
| TTTATCAACCTCCAACTTGT+GGG | 0.484171 | 2_2:+58381748 | None:intergenic |
| ACTCTAGCTATAAAATGGAC+CGG | 0.484208 | 2_2:-58382010 | Msa0260650:three_prime_UTR |
| TGTTTGTTGAATCATGTAAG+AGG | 0.487798 | 2_2:-58382361 | Msa0260650:CDS |
| TGATGTTGTTGGGAATTTAG+TGG | 0.488099 | 2_2:+58383153 | None:intergenic |
| GGTGCAGTTGGAACCAGGGG+TGG | 0.495977 | 2_2:-58381982 | Msa0260650:three_prime_UTR |
| CAAGATAAAATGAACAATAG+AGG | 0.499260 | 2_2:-58381945 | Msa0260650:three_prime_UTR |
| GCTATAATTATTCTTCTCAC+TGG | 0.500501 | 2_2:+58382168 | None:intergenic |
| TGGAGCTTGTACACTTTGAA+AGG | 0.503826 | 2_2:+58382083 | None:intergenic |
| TGGTGGGATGGCCACCGGTG+AGG | 0.504156 | 2_2:-58383006 | Msa0260650:CDS |
| ATGAGAAGTACTAGAAGTTG+AGG | 0.504166 | 2_2:+58383204 | None:intergenic |
| GATGGTGACTGGATGTTGCT+TGG | 0.516052 | 2_2:-58382597 | Msa0260650:CDS |
| CAGGAGACTGAGCTTACCCT+TGG | 0.519336 | 2_2:-58383307 | Msa0260650:CDS |
| TATATATGAACTTACTTCCA+TGG | 0.525569 | 2_2:+58382567 | None:intergenic |
| TTTGGGTGCAGTTGGAACCA+GGG | 0.526314 | 2_2:-58381986 | Msa0260650:three_prime_UTR |
| GGACCGGGTTTGGGTGCAGT+TGG | 0.527922 | 2_2:-58381994 | Msa0260650:three_prime_UTR |
| TTCCTAATAAAGACCACCCC+TGG | 0.529842 | 2_2:+58381969 | None:intergenic |
| AGCTCCATATCTAAGAAAAG+TGG | 0.534799 | 2_2:-58382927 | Msa0260650:CDS |
| TGCATGCAGGGAACATGTGG+TGG | 0.534930 | 2_2:-58383023 | Msa0260650:intron |
| GTTCCAACTGCACCCAAACC+CGG | 0.536898 | 2_2:+58381991 | None:intergenic |
| GCAGGGAACATGTGGTGGGA+TGG | 0.542566 | 2_2:-58383018 | Msa0260650:intron |
| TGTTGCAGGTTCCAGATGTA+CGG | 0.542574 | 2_2:-58382194 | Msa0260650:intron |
| TTCCTACTTGCCCTCACCGG+TGG | 0.558621 | 2_2:+58382995 | None:intergenic |
| CTCTAGCTATAAAATGGACC+GGG | 0.559995 | 2_2:-58382009 | Msa0260650:three_prime_UTR |
| ATAATTATTCTTCTCACTGG+AGG | 0.565078 | 2_2:+58382171 | None:intergenic |
| ACGAAGATAAAGATGGTGAC+TGG | 0.565436 | 2_2:-58382608 | Msa0260650:CDS |
| GCATGCAGGGAACATGTGGT+GGG | 0.566681 | 2_2:-58383022 | Msa0260650:intron |
| TATCAACCTCCAACTTGTGG+GGG | 0.569967 | 2_2:+58381750 | None:intergenic |
| GGTAGTAGTACCAAAACTGC+AGG | 0.586869 | 2_2:-58383277 | Msa0260650:CDS |
| TTATCAACCTCCAACTTGTG+GGG | 0.587139 | 2_2:+58381749 | None:intergenic |
| GATAAGGCTTATGATTAGCT+CGG | 0.592824 | 2_2:-58382339 | Msa0260650:CDS |
| GCTACATACGAAGATAAAGA+TGG | 0.600922 | 2_2:-58382615 | Msa0260650:CDS |
| CAGGTATATATACATAAGAG+AGG | 0.601747 | 2_2:-58381894 | Msa0260650:three_prime_UTR |
| TGGCAATTAGATGAAGATCA+AGG | 0.605901 | 2_2:+58383227 | None:intergenic |
| ATCAACCTCCAACTTGTGGG+GGG | 0.613816 | 2_2:+58381751 | None:intergenic |
| GGGTGCATGCAGGGAACATG+TGG | 0.617054 | 2_2:-58383026 | Msa0260650:intron |
| TACTACTACCGGGAAGACCA+AGG | 0.619025 | 2_2:+58383290 | None:intergenic |
| TTGCAAGTACGTGAAAGTTG+CGG | 0.621140 | 2_2:-58382957 | Msa0260650:CDS |
| GGCCACCGGTGAGGGCAAGT+AGG | 0.630880 | 2_2:-58382997 | Msa0260650:CDS |
| GAAGCAATTAGTAGCAAACA+TGG | 0.636180 | 2_2:+58382856 | None:intergenic |
| AGAAGTACTAGAAGTTGAGG+TGG | 0.639519 | 2_2:+58383207 | None:intergenic |
| TGTTGCTTGGGGATGCACCA+TGG | 0.646753 | 2_2:-58382584 | Msa0260650:CDS |
| AGGTATATATACATAAGAGA+GGG | 0.648408 | 2_2:-58381893 | Msa0260650:three_prime_UTR |
| ATATAGCGATGATCATAATG+TGG | 0.656981 | 2_2:+58382038 | None:intergenic |
| TCGTACATTCAATGGAACTG+TGG | 0.659415 | 2_2:+58383350 | None:intergenic |
| ACTACTACCGGGAAGACCAA+GGG | 0.663756 | 2_2:+58383291 | None:intergenic |
| ATTGTATATATAACTCAATG+TGG | 0.669958 | 2_2:+58383400 | None:intergenic |
| TGGTGACTGGATGTTGCTTG+GGG | 0.674509 | 2_2:-58382595 | Msa0260650:CDS |
| ACAATGTCATCACAAATGAG+TGG | 0.687436 | 2_2:-58383382 | Msa0260650:CDS |
| AAGGCTTATGATTAGCTCGG+AGG | 0.705152 | 2_2:-58382336 | Msa0260650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATTAATGTAAAGT+TGG | - | chr2_2:58382173-58382192 | Msa0260650:CDS | 10.0% |
| !! | AAATTAATTAATGTAAAGTT+GGG | - | chr2_2:58382174-58382193 | Msa0260650:CDS | 10.0% |
| !! | TTTATACACAATATAATTAT+AGG | - | chr2_2:58382954-58382973 | Msa0260650:CDS | 10.0% |
| !! | AAAATTAATTAATGTAAAGT+TGG | - | chr2_2:58382173-58382192 | Msa0260650:CDS | 10.0% |
| !! | AAATTAATTAATGTAAAGTT+GGG | - | chr2_2:58382174-58382193 | Msa0260650:CDS | 10.0% |
| !! | TTTATACACAATATAATTAT+AGG | - | chr2_2:58382954-58382973 | Msa0260650:CDS | 10.0% |
| !! | TAATAAGATGAATATTATTC+AGG | - | chr2_2:58381894-58381913 | Msa0260650:three_prime_UTR | 15.0% |
| !! | TATGAAACATAAAAATAACA+TGG | + | chr2_2:58382444-58382463 | None:intergenic | 15.0% |
| !!! | TAATATTTTATATTCTAGCT+AGG | - | chr2_2:58383111-58383130 | Msa0260650:intron | 15.0% |
| !! | TAATAAGATGAATATTATTC+AGG | - | chr2_2:58381894-58381913 | Msa0260650:three_prime_UTR | 15.0% |
| !! | TATGAAACATAAAAATAACA+TGG | + | chr2_2:58382444-58382463 | None:intergenic | 15.0% |
| !!! | TAATATTTTATATTCTAGCT+AGG | - | chr2_2:58383111-58383130 | Msa0260650:intron | 15.0% |
| !! | ATTGTATATATAACTCAATG+TGG | + | chr2_2:58381823-58381842 | None:intergenic | 20.0% |
| !! | AAAAAATAGGAATGAATACA+TGG | - | chr2_2:58382583-58382602 | Msa0260650:CDS | 20.0% |
| !! | TTTGATGAATATATACTCTA+AGG | + | chr2_2:58382754-58382773 | None:intergenic | 20.0% |
| !! | ATTGATTGATATCATAAGTT+TGG | - | chr2_2:58382977-58382996 | Msa0260650:CDS | 20.0% |
| !!! | TAGTACATGCTTTTTTTAAT+TGG | + | chr2_2:58383160-58383179 | None:intergenic | 20.0% |
| !! | AATAGTATATAAAACCCTAA+TGG | - | chr2_2:58383376-58383395 | Msa0260650:CDS | 20.0% |
| !! | ATTGTATATATAACTCAATG+TGG | + | chr2_2:58381823-58381842 | None:intergenic | 20.0% |
| !! | AAAAAATAGGAATGAATACA+TGG | - | chr2_2:58382583-58382602 | Msa0260650:CDS | 20.0% |
| !! | TTTGATGAATATATACTCTA+AGG | + | chr2_2:58382754-58382773 | None:intergenic | 20.0% |
| !! | ATTGATTGATATCATAAGTT+TGG | - | chr2_2:58382977-58382996 | Msa0260650:CDS | 20.0% |
| !!! | TAGTACATGCTTTTTTTAAT+TGG | + | chr2_2:58383160-58383179 | None:intergenic | 20.0% |
| !! | AATAGTATATAAAACCCTAA+TGG | - | chr2_2:58383376-58383395 | Msa0260650:CDS | 20.0% |
| ! | TATATAACTCAATGTGGTTA+CGG | + | chr2_2:58381817-58381836 | None:intergenic | 25.0% |
| ! | CTTATTATTCGTACATTCAA+TGG | + | chr2_2:58381881-58381900 | None:intergenic | 25.0% |
| ! | TACATATATGTTGTGTGTTA+TGG | - | chr2_2:58382473-58382492 | Msa0260650:intron | 25.0% |
| ! | ACATATATGTTGTGTGTTAT+GGG | - | chr2_2:58382474-58382493 | Msa0260650:intron | 25.0% |
| ! | CTGCAATAATTAATGATAGT+TGG | + | chr2_2:58382523-58382542 | None:intergenic | 25.0% |
| ! | CAACTATCATTAATTATTGC+AGG | - | chr2_2:58382521-58382540 | Msa0260650:intron | 25.0% |
| !! | TCATGGATTCTAGAAAAAAT+AGG | - | chr2_2:58382570-58382589 | Msa0260650:intron | 25.0% |
| ! | TATATATGAACTTACTTCCA+TGG | + | chr2_2:58382656-58382675 | None:intergenic | 25.0% |
| ! | AAATAATAACTAGCTGTAGA+TGG | + | chr2_2:58382687-58382706 | None:intergenic | 25.0% |
| !!! | TTTTTTTCTTTCTTTCCTCT+AGG | - | chr2_2:58382835-58382854 | Msa0260650:intron | 25.0% |
| ! | AACAATATTAGTAAATCAGG+GGG | + | chr2_2:58383010-58383029 | None:intergenic | 25.0% |
| ! | CAACAATATTAGTAAATCAG+GGG | + | chr2_2:58383011-58383030 | None:intergenic | 25.0% |
| ! | GCAACAATATTAGTAAATCA+GGG | + | chr2_2:58383012-58383031 | None:intergenic | 25.0% |
| ! | TGCAACAATATTAGTAAATC+AGG | + | chr2_2:58383013-58383032 | None:intergenic | 25.0% |
| ! | TGATTTACTAATATTGTTGC+AGG | - | chr2_2:58383012-58383031 | Msa0260650:CDS | 25.0% |
| ! | AAAAGACTCTAGCTATAAAA+TGG | - | chr2_2:58383205-58383224 | Msa0260650:CDS | 25.0% |
| ! | CAAGATAAAATGAACAATAG+AGG | - | chr2_2:58383275-58383294 | Msa0260650:CDS | 25.0% |
| ! | AGGTATATATACATAAGAGA+GGG | - | chr2_2:58383327-58383346 | Msa0260650:CDS | 25.0% |
| !!! | TGAGAATGATTAGTTTCTAT+TGG | + | chr2_2:58383435-58383454 | None:intergenic | 25.0% |
| ! | TATATAACTCAATGTGGTTA+CGG | + | chr2_2:58381817-58381836 | None:intergenic | 25.0% |
| ! | CTTATTATTCGTACATTCAA+TGG | + | chr2_2:58381881-58381900 | None:intergenic | 25.0% |
| ! | TACATATATGTTGTGTGTTA+TGG | - | chr2_2:58382473-58382492 | Msa0260650:intron | 25.0% |
| ! | ACATATATGTTGTGTGTTAT+GGG | - | chr2_2:58382474-58382493 | Msa0260650:intron | 25.0% |
| ! | CTGCAATAATTAATGATAGT+TGG | + | chr2_2:58382523-58382542 | None:intergenic | 25.0% |
| ! | CAACTATCATTAATTATTGC+AGG | - | chr2_2:58382521-58382540 | Msa0260650:intron | 25.0% |
| !! | TCATGGATTCTAGAAAAAAT+AGG | - | chr2_2:58382570-58382589 | Msa0260650:intron | 25.0% |
| ! | TATATATGAACTTACTTCCA+TGG | + | chr2_2:58382656-58382675 | None:intergenic | 25.0% |
| ! | AAATAATAACTAGCTGTAGA+TGG | + | chr2_2:58382687-58382706 | None:intergenic | 25.0% |
| !!! | TTTTTTTCTTTCTTTCCTCT+AGG | - | chr2_2:58382835-58382854 | Msa0260650:intron | 25.0% |
| ! | AACAATATTAGTAAATCAGG+GGG | + | chr2_2:58383010-58383029 | None:intergenic | 25.0% |
| ! | CAACAATATTAGTAAATCAG+GGG | + | chr2_2:58383011-58383030 | None:intergenic | 25.0% |
| ! | GCAACAATATTAGTAAATCA+GGG | + | chr2_2:58383012-58383031 | None:intergenic | 25.0% |
| ! | TGCAACAATATTAGTAAATC+AGG | + | chr2_2:58383013-58383032 | None:intergenic | 25.0% |
| ! | TGATTTACTAATATTGTTGC+AGG | - | chr2_2:58383012-58383031 | Msa0260650:CDS | 25.0% |
| ! | AAAAGACTCTAGCTATAAAA+TGG | - | chr2_2:58383205-58383224 | Msa0260650:CDS | 25.0% |
| ! | CAAGATAAAATGAACAATAG+AGG | - | chr2_2:58383275-58383294 | Msa0260650:CDS | 25.0% |
| ! | AGGTATATATACATAAGAGA+GGG | - | chr2_2:58383327-58383346 | Msa0260650:CDS | 25.0% |
| !!! | TGAGAATGATTAGTTTCTAT+TGG | + | chr2_2:58383435-58383454 | None:intergenic | 25.0% |
| CGTTCAAAGTTGTGTATATT+AGG | + | chr2_2:58381775-58381794 | None:intergenic | 30.0% | |
| GTTCTTACTTTGATGTTGTT+GGG | + | chr2_2:58382080-58382099 | None:intergenic | 30.0% | |
| ACTAGCTAGCTATATATGTA+CGG | + | chr2_2:58382102-58382121 | None:intergenic | 30.0% | |
| !! | AGATCCACTTTTCTTAGATA+TGG | + | chr2_2:58382300-58382319 | None:intergenic | 30.0% |
| GATGAATGAGAAGAAATTCA+TGG | - | chr2_2:58382553-58382572 | Msa0260650:intron | 30.0% | |
| ! | TGTTTGTTGAATCATGTAAG+AGG | - | chr2_2:58382859-58382878 | Msa0260650:CDS | 30.0% |
| TTGAATCATGTAAGAGGATA+AGG | - | chr2_2:58382865-58382884 | Msa0260650:CDS | 30.0% | |
| !!! | AGGACAATATTGATTTTGGT+TGG | - | chr2_2:58382904-58382923 | Msa0260650:CDS | 30.0% |
| ATAATTATTCTTCTCACTGG+AGG | + | chr2_2:58383052-58383071 | None:intergenic | 30.0% | |
| GCTATAATTATTCTTCTCAC+TGG | + | chr2_2:58383055-58383074 | None:intergenic | 30.0% | |
| ATATAGCGATGATCATAATG+TGG | + | chr2_2:58383185-58383204 | None:intergenic | 30.0% | |
| ! | CTTTGAGAAATGATTACATC+AGG | - | chr2_2:58383307-58383326 | Msa0260650:CDS | 30.0% |
| CAGGTATATATACATAAGAG+AGG | - | chr2_2:58383326-58383345 | Msa0260650:CDS | 30.0% | |
| CGTTCAAAGTTGTGTATATT+AGG | + | chr2_2:58381775-58381794 | None:intergenic | 30.0% | |
| GTTCTTACTTTGATGTTGTT+GGG | + | chr2_2:58382080-58382099 | None:intergenic | 30.0% | |
| ACTAGCTAGCTATATATGTA+CGG | + | chr2_2:58382102-58382121 | None:intergenic | 30.0% | |
| !! | AGATCCACTTTTCTTAGATA+TGG | + | chr2_2:58382300-58382319 | None:intergenic | 30.0% |
| GATGAATGAGAAGAAATTCA+TGG | - | chr2_2:58382553-58382572 | Msa0260650:intron | 30.0% | |
| ! | TGTTTGTTGAATCATGTAAG+AGG | - | chr2_2:58382859-58382878 | Msa0260650:CDS | 30.0% |
| TTGAATCATGTAAGAGGATA+AGG | - | chr2_2:58382865-58382884 | Msa0260650:CDS | 30.0% | |
| !!! | AGGACAATATTGATTTTGGT+TGG | - | chr2_2:58382904-58382923 | Msa0260650:CDS | 30.0% |
| ATAATTATTCTTCTCACTGG+AGG | + | chr2_2:58383052-58383071 | None:intergenic | 30.0% | |
| GCTATAATTATTCTTCTCAC+TGG | + | chr2_2:58383055-58383074 | None:intergenic | 30.0% | |
| ATATAGCGATGATCATAATG+TGG | + | chr2_2:58383185-58383204 | None:intergenic | 30.0% | |
| ! | CTTTGAGAAATGATTACATC+AGG | - | chr2_2:58383307-58383326 | Msa0260650:CDS | 30.0% |
| CAGGTATATATACATAAGAG+AGG | - | chr2_2:58383326-58383345 | Msa0260650:CDS | 30.0% | |
| ACAATGTCATCACAAATGAG+TGG | - | chr2_2:58381838-58381857 | Msa0260650:three_prime_UTR | 35.0% | |
| TGGCAATTAGATGAAGATCA+AGG | + | chr2_2:58381996-58382015 | None:intergenic | 35.0% | |
| !! | ATGAGAAGTACTAGAAGTTG+AGG | + | chr2_2:58382019-58382038 | None:intergenic | 35.0% |
| TGATGTTGTTGGGAATTTAG+TGG | + | chr2_2:58382070-58382089 | None:intergenic | 35.0% | |
| GGTTCTTACTTTGATGTTGT+TGG | + | chr2_2:58382081-58382100 | None:intergenic | 35.0% | |
| ATATAGCTAGCTAGTTAGCT+AGG | - | chr2_2:58382107-58382126 | Msa0260650:three_prime_UTR | 35.0% | |
| AGGGCAAGTAGGAAAAATAT+TGG | - | chr2_2:58382234-58382253 | Msa0260650:intron | 35.0% | |
| AGCTCCATATCTAAGAAAAG+TGG | - | chr2_2:58382293-58382312 | Msa0260650:intron | 35.0% | |
| GAAGCAATTAGTAGCAAACA+TGG | + | chr2_2:58382367-58382386 | None:intergenic | 35.0% | |
| GCTACATACGAAGATAAAGA+TGG | - | chr2_2:58382605-58382624 | Msa0260650:CDS | 35.0% | |
| TGATTCAACAAACATCCTAG+AGG | + | chr2_2:58382853-58382872 | None:intergenic | 35.0% | |
| ! | GATAAGGCTTATGATTAGCT+CGG | - | chr2_2:58382881-58382900 | Msa0260650:CDS | 35.0% |
| !!! | TCGGAGGACAATATTGATTT+TGG | - | chr2_2:58382900-58382919 | Msa0260650:CDS | 35.0% |
| ACTCTAGCTATAAAATGGAC+CGG | - | chr2_2:58383210-58383229 | Msa0260650:CDS | 35.0% | |
| GAGCAAGTAATTGTCCATTA+GGG | + | chr2_2:58383393-58383412 | None:intergenic | 35.0% | |
| TGAGCAAGTAATTGTCCATT+AGG | + | chr2_2:58383394-58383413 | None:intergenic | 35.0% | |
| ACAATGTCATCACAAATGAG+TGG | - | chr2_2:58381838-58381857 | Msa0260650:three_prime_UTR | 35.0% | |
| TGGCAATTAGATGAAGATCA+AGG | + | chr2_2:58381996-58382015 | None:intergenic | 35.0% | |
| !! | ATGAGAAGTACTAGAAGTTG+AGG | + | chr2_2:58382019-58382038 | None:intergenic | 35.0% |
| TGATGTTGTTGGGAATTTAG+TGG | + | chr2_2:58382070-58382089 | None:intergenic | 35.0% | |
| GGTTCTTACTTTGATGTTGT+TGG | + | chr2_2:58382081-58382100 | None:intergenic | 35.0% | |
| ATATAGCTAGCTAGTTAGCT+AGG | - | chr2_2:58382107-58382126 | Msa0260650:three_prime_UTR | 35.0% | |
| AGGGCAAGTAGGAAAAATAT+TGG | - | chr2_2:58382234-58382253 | Msa0260650:intron | 35.0% | |
| AGCTCCATATCTAAGAAAAG+TGG | - | chr2_2:58382293-58382312 | Msa0260650:intron | 35.0% | |
| GAAGCAATTAGTAGCAAACA+TGG | + | chr2_2:58382367-58382386 | None:intergenic | 35.0% | |
| GCTACATACGAAGATAAAGA+TGG | - | chr2_2:58382605-58382624 | Msa0260650:CDS | 35.0% | |
| TGATTCAACAAACATCCTAG+AGG | + | chr2_2:58382853-58382872 | None:intergenic | 35.0% | |
| ! | GATAAGGCTTATGATTAGCT+CGG | - | chr2_2:58382881-58382900 | Msa0260650:CDS | 35.0% |
| !!! | TCGGAGGACAATATTGATTT+TGG | - | chr2_2:58382900-58382919 | Msa0260650:CDS | 35.0% |
| ACTCTAGCTATAAAATGGAC+CGG | - | chr2_2:58383210-58383229 | Msa0260650:CDS | 35.0% | |
| GAGCAAGTAATTGTCCATTA+GGG | + | chr2_2:58383393-58383412 | None:intergenic | 35.0% | |
| TGAGCAAGTAATTGTCCATT+AGG | + | chr2_2:58383394-58383413 | None:intergenic | 35.0% | |
| TCGTACATTCAATGGAACTG+TGG | + | chr2_2:58381873-58381892 | None:intergenic | 40.0% | |
| !! | TGCAGTTTTGGTACTACTAC+CGG | + | chr2_2:58381944-58381963 | None:intergenic | 40.0% |
| ! | ACGTTTTATGCCTGCAGTTT+TGG | + | chr2_2:58381956-58381975 | None:intergenic | 40.0% |
| !! | AGAAGTACTAGAAGTTGAGG+TGG | + | chr2_2:58382016-58382035 | None:intergenic | 40.0% |
| TTGCAAGTACGTGAAAGTTG+CGG | - | chr2_2:58382263-58382282 | Msa0260650:intron | 40.0% | |
| ACGAAGATAAAGATGGTGAC+TGG | - | chr2_2:58382612-58382631 | Msa0260650:CDS | 40.0% | |
| TGGAGCTTGTACACTTTGAA+AGG | + | chr2_2:58383140-58383159 | None:intergenic | 40.0% | |
| CTCTAGCTATAAAATGGACC+GGG | - | chr2_2:58383211-58383230 | Msa0260650:CDS | 40.0% | |
| CTATAAAATGGACCGGGTTT+GGG | - | chr2_2:58383217-58383236 | Msa0260650:CDS | 40.0% | |
| TCGTACATTCAATGGAACTG+TGG | + | chr2_2:58381873-58381892 | None:intergenic | 40.0% | |
| !! | TGCAGTTTTGGTACTACTAC+CGG | + | chr2_2:58381944-58381963 | None:intergenic | 40.0% |
| ! | ACGTTTTATGCCTGCAGTTT+TGG | + | chr2_2:58381956-58381975 | None:intergenic | 40.0% |
| !! | AGAAGTACTAGAAGTTGAGG+TGG | + | chr2_2:58382016-58382035 | None:intergenic | 40.0% |
| TTGCAAGTACGTGAAAGTTG+CGG | - | chr2_2:58382263-58382282 | Msa0260650:intron | 40.0% | |
| ACGAAGATAAAGATGGTGAC+TGG | - | chr2_2:58382612-58382631 | Msa0260650:CDS | 40.0% | |
| TGGAGCTTGTACACTTTGAA+AGG | + | chr2_2:58383140-58383159 | None:intergenic | 40.0% | |
| CTCTAGCTATAAAATGGACC+GGG | - | chr2_2:58383211-58383230 | Msa0260650:CDS | 40.0% | |
| CTATAAAATGGACCGGGTTT+GGG | - | chr2_2:58383217-58383236 | Msa0260650:CDS | 40.0% | |
| !! | GCAGTTTTGGTACTACTACC+GGG | + | chr2_2:58381943-58381962 | None:intergenic | 45.0% |
| GGTAGTAGTACCAAAACTGC+AGG | - | chr2_2:58381943-58381962 | Msa0260650:three_prime_UTR | 45.0% | |
| ATGTAAAGTTGGGTGCATGC+AGG | - | chr2_2:58382184-58382203 | Msa0260650:CDS | 45.0% | |
| TGTAAAGTTGGGTGCATGCA+GGG | - | chr2_2:58382185-58382204 | Msa0260650:CDS | 45.0% | |
| ! | TTTTTCCTACTTGCCCTCAC+CGG | + | chr2_2:58382231-58382250 | None:intergenic | 45.0% |
| TACGTGAAAGTTGCGGTTGA+TGG | - | chr2_2:58382270-58382289 | Msa0260650:intron | 45.0% | |
| ! | ATGGTGACTGGATGTTGCTT+GGG | - | chr2_2:58382624-58382643 | Msa0260650:CDS | 45.0% |
| ! | AAGGCTTATGATTAGCTCGG+AGG | - | chr2_2:58382884-58382903 | Msa0260650:CDS | 45.0% |
| TGTTGCAGGTTCCAGATGTA+CGG | - | chr2_2:58383026-58383045 | Msa0260650:intron | 45.0% | |
| GCTATAAAATGGACCGGGTT+TGG | - | chr2_2:58383216-58383235 | Msa0260650:CDS | 45.0% | |
| AACCAGGGGTGGTCTTTATT+AGG | - | chr2_2:58383249-58383268 | Msa0260650:CDS | 45.0% | |
| TTCCTAATAAAGACCACCCC+TGG | + | chr2_2:58383254-58383273 | None:intergenic | 45.0% | |
| !! | GCAGTTTTGGTACTACTACC+GGG | + | chr2_2:58381943-58381962 | None:intergenic | 45.0% |
| GGTAGTAGTACCAAAACTGC+AGG | - | chr2_2:58381943-58381962 | Msa0260650:three_prime_UTR | 45.0% | |
| ATGTAAAGTTGGGTGCATGC+AGG | - | chr2_2:58382184-58382203 | Msa0260650:CDS | 45.0% | |
| TGTAAAGTTGGGTGCATGCA+GGG | - | chr2_2:58382185-58382204 | Msa0260650:CDS | 45.0% | |
| ! | TTTTTCCTACTTGCCCTCAC+CGG | + | chr2_2:58382231-58382250 | None:intergenic | 45.0% |
| TACGTGAAAGTTGCGGTTGA+TGG | - | chr2_2:58382270-58382289 | Msa0260650:intron | 45.0% | |
| ! | ATGGTGACTGGATGTTGCTT+GGG | - | chr2_2:58382624-58382643 | Msa0260650:CDS | 45.0% |
| ! | AAGGCTTATGATTAGCTCGG+AGG | - | chr2_2:58382884-58382903 | Msa0260650:CDS | 45.0% |
| TGTTGCAGGTTCCAGATGTA+CGG | - | chr2_2:58383026-58383045 | Msa0260650:intron | 45.0% | |
| GCTATAAAATGGACCGGGTT+TGG | - | chr2_2:58383216-58383235 | Msa0260650:CDS | 45.0% | |
| AACCAGGGGTGGTCTTTATT+AGG | - | chr2_2:58383249-58383268 | Msa0260650:CDS | 45.0% | |
| TTCCTAATAAAGACCACCCC+TGG | + | chr2_2:58383254-58383273 | None:intergenic | 45.0% | |
| ACTACTACCGGGAAGACCAA+GGG | + | chr2_2:58381932-58381951 | None:intergenic | 50.0% | |
| TACTACTACCGGGAAGACCA+AGG | + | chr2_2:58381933-58381952 | None:intergenic | 50.0% | |
| GATGGTGACTGGATGTTGCT+TGG | - | chr2_2:58382623-58382642 | Msa0260650:CDS | 50.0% | |
| ! | TGGTGACTGGATGTTGCTTG+GGG | - | chr2_2:58382625-58382644 | Msa0260650:CDS | 50.0% |
| TTTGGGTGCAGTTGGAACCA+GGG | - | chr2_2:58383234-58383253 | Msa0260650:CDS | 50.0% | |
| ACTACTACCGGGAAGACCAA+GGG | + | chr2_2:58381932-58381951 | None:intergenic | 50.0% | |
| TACTACTACCGGGAAGACCA+AGG | + | chr2_2:58381933-58381952 | None:intergenic | 50.0% | |
| GATGGTGACTGGATGTTGCT+TGG | - | chr2_2:58382623-58382642 | Msa0260650:CDS | 50.0% | |
| ! | TGGTGACTGGATGTTGCTTG+GGG | - | chr2_2:58382625-58382644 | Msa0260650:CDS | 50.0% |
| TTTGGGTGCAGTTGGAACCA+GGG | - | chr2_2:58383234-58383253 | Msa0260650:CDS | 50.0% | |
| CAGGAGACTGAGCTTACCCT+TGG | - | chr2_2:58381913-58381932 | Msa0260650:three_prime_UTR | 55.0% | |
| ! | GAGCTTACCCTTGGTCTTCC+CGG | - | chr2_2:58381922-58381941 | Msa0260650:three_prime_UTR | 55.0% |
| TGCATGCAGGGAACATGTGG+TGG | - | chr2_2:58382197-58382216 | Msa0260650:intron | 55.0% | |
| GCATGCAGGGAACATGTGGT+GGG | - | chr2_2:58382198-58382217 | Msa0260650:intron | 55.0% | |
| ! | TGTTGCTTGGGGATGCACCA+TGG | - | chr2_2:58382636-58382655 | Msa0260650:CDS | 55.0% |
| GTTCCAACTGCACCCAAACC+CGG | + | chr2_2:58383232-58383251 | None:intergenic | 55.0% | |
| GTTTGGGTGCAGTTGGAACC+AGG | - | chr2_2:58383233-58383252 | Msa0260650:CDS | 55.0% | |
| TTGGGTGCAGTTGGAACCAG+GGG | - | chr2_2:58383235-58383254 | Msa0260650:CDS | 55.0% | |
| CAGGAGACTGAGCTTACCCT+TGG | - | chr2_2:58381913-58381932 | Msa0260650:three_prime_UTR | 55.0% | |
| ! | GAGCTTACCCTTGGTCTTCC+CGG | - | chr2_2:58381922-58381941 | Msa0260650:three_prime_UTR | 55.0% |
| TGCATGCAGGGAACATGTGG+TGG | - | chr2_2:58382197-58382216 | Msa0260650:intron | 55.0% | |
| GCATGCAGGGAACATGTGGT+GGG | - | chr2_2:58382198-58382217 | Msa0260650:intron | 55.0% | |
| ! | TGTTGCTTGGGGATGCACCA+TGG | - | chr2_2:58382636-58382655 | Msa0260650:CDS | 55.0% |
| GTTCCAACTGCACCCAAACC+CGG | + | chr2_2:58383232-58383251 | None:intergenic | 55.0% | |
| GTTTGGGTGCAGTTGGAACC+AGG | - | chr2_2:58383233-58383252 | Msa0260650:CDS | 55.0% | |
| TTGGGTGCAGTTGGAACCAG+GGG | - | chr2_2:58383235-58383254 | Msa0260650:CDS | 55.0% | |
| GGGTGCATGCAGGGAACATG+TGG | - | chr2_2:58382194-58382213 | Msa0260650:intron | 60.0% | |
| ! | GCAGGGAACATGTGGTGGGA+TGG | - | chr2_2:58382202-58382221 | Msa0260650:intron | 60.0% |
| ! | ACATGTGGTGGGATGGCCAC+CGG | - | chr2_2:58382209-58382228 | Msa0260650:intron | 60.0% |
| TTCCTACTTGCCCTCACCGG+TGG | + | chr2_2:58382228-58382247 | None:intergenic | 60.0% | |
| CTCACTGGAGGCCGTACATC+TGG | + | chr2_2:58383040-58383059 | None:intergenic | 60.0% | |
| GGGTGCATGCAGGGAACATG+TGG | - | chr2_2:58382194-58382213 | Msa0260650:intron | 60.0% | |
| ! | GCAGGGAACATGTGGTGGGA+TGG | - | chr2_2:58382202-58382221 | Msa0260650:intron | 60.0% |
| ! | ACATGTGGTGGGATGGCCAC+CGG | - | chr2_2:58382209-58382228 | Msa0260650:intron | 60.0% |
| TTCCTACTTGCCCTCACCGG+TGG | + | chr2_2:58382228-58382247 | None:intergenic | 60.0% | |
| CTCACTGGAGGCCGTACATC+TGG | + | chr2_2:58383040-58383059 | None:intergenic | 60.0% | |
| GGACCGGGTTTGGGTGCAGT+TGG | - | chr2_2:58383226-58383245 | Msa0260650:CDS | 65.0% | |
| GGTGCAGTTGGAACCAGGGG+TGG | - | chr2_2:58383238-58383257 | Msa0260650:CDS | 65.0% | |
| GGACCGGGTTTGGGTGCAGT+TGG | - | chr2_2:58383226-58383245 | Msa0260650:CDS | 65.0% | |
| GGTGCAGTTGGAACCAGGGG+TGG | - | chr2_2:58383238-58383257 | Msa0260650:CDS | 65.0% | |
| TGGTGGGATGGCCACCGGTG+AGG | - | chr2_2:58382214-58382233 | Msa0260650:intron | 70.0% | |
| GGTGGGATGGCCACCGGTGA+GGG | - | chr2_2:58382215-58382234 | Msa0260650:intron | 70.0% | |
| GGCCACCGGTGAGGGCAAGT+AGG | - | chr2_2:58382223-58382242 | Msa0260650:intron | 70.0% | |
| TGGTGGGATGGCCACCGGTG+AGG | - | chr2_2:58382214-58382233 | Msa0260650:intron | 70.0% | |
| GGTGGGATGGCCACCGGTGA+GGG | - | chr2_2:58382215-58382234 | Msa0260650:intron | 70.0% | |
| GGCCACCGGTGAGGGCAAGT+AGG | - | chr2_2:58382223-58382242 | Msa0260650:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 58381763 | 58383479 | 58381763 | ID=Msa0260650;Name=Msa0260650 |
| chr2_2 | mRNA | 58381763 | 58383479 | 58381763 | ID=Msa0260650-mRNA-1;Parent=Msa0260650;Name=Msa0260650-mRNA-1;_AED=0.07;_eAED=0.07;_QI=78|1|1|1|1|1|5|402|221 |
| chr2_2 | exon | 58381763 | 58382208 | 58381763 | ID=Msa0260650-mRNA-1:exon:17899;Parent=Msa0260650-mRNA-1 |
| chr2_2 | exon | 58382321 | 58382385 | 58382321 | ID=Msa0260650-mRNA-1:exon:17898;Parent=Msa0260650-mRNA-1 |
| chr2_2 | exon | 58382582 | 58382699 | 58382582 | ID=Msa0260650-mRNA-1:exon:17897;Parent=Msa0260650-mRNA-1 |
| chr2_2 | exon | 58382849 | 58383036 | 58382849 | ID=Msa0260650-mRNA-1:exon:17896;Parent=Msa0260650-mRNA-1 |
| chr2_2 | exon | 58383151 | 58383479 | 58383151 | ID=Msa0260650-mRNA-1:exon:17895;Parent=Msa0260650-mRNA-1 |
| chr2_2 | five_prime_UTR | 58383402 | 58383479 | 58383402 | ID=Msa0260650-mRNA-1:five_prime_utr;Parent=Msa0260650-mRNA-1 |
| chr2_2 | CDS | 58383151 | 58383401 | 58383151 | ID=Msa0260650-mRNA-1:cds;Parent=Msa0260650-mRNA-1 |
| chr2_2 | CDS | 58382849 | 58383036 | 58382849 | ID=Msa0260650-mRNA-1:cds;Parent=Msa0260650-mRNA-1 |
| chr2_2 | CDS | 58382582 | 58382699 | 58382582 | ID=Msa0260650-mRNA-1:cds;Parent=Msa0260650-mRNA-1 |
| chr2_2 | CDS | 58382321 | 58382385 | 58382321 | ID=Msa0260650-mRNA-1:cds;Parent=Msa0260650-mRNA-1 |
| chr2_2 | CDS | 58382165 | 58382208 | 58382165 | ID=Msa0260650-mRNA-1:cds;Parent=Msa0260650-mRNA-1 |
| chr2_2 | three_prime_UTR | 58381763 | 58382164 | 58381763 | ID=Msa0260650-mRNA-1:three_prime_utr;Parent=Msa0260650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
