Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260590 | AES68053.1 | 80.660 | 212 | 15 | 6 | 1 | 208 | 1 | 190 | 9.54e-100 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260590 | sp|P93830|IAA17_ARATH | 45.116 | 215 | 87 | 8 | 24 | 210 | 9 | 220 | 3.38e-51 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260590 | G7IMD8 | 80.660 | 212 | 15 | 6 | 1 | 208 | 1 | 190 | 4.56e-100 | 298 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0260590 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094160 | Msa0260590 | 0.903127 | 4.778462e-79 | -8.615850e-47 |
| Msa0105340 | Msa0260590 | 0.802432 | 5.626492e-49 | -8.615850e-47 |
| Msa0225780 | Msa0260590 | 0.971573 | 2.236807e-133 | -8.615850e-47 |
| Msa0260590 | Msa0260650 | 0.970818 | 3.376285e-132 | -8.615850e-47 |
| Msa0260590 | Msa0284870 | 0.805141 | 1.540173e-49 | -8.615850e-47 |
| Msa0260590 | Msa0654060 | 0.810025 | 1.415234e-50 | -8.615850e-47 |
| Msa0260590 | Msa0743640 | 0.805798 | 1.121976e-49 | -8.615850e-47 |
| Msa0260590 | Msa0863760 | 0.808182 | 3.511347e-50 | -8.615850e-47 |
| Msa0260590 | Msa0887070 | 0.805338 | 1.400841e-49 | -8.615850e-47 |
| Msa0260590 | Msa0903730 | 0.802694 | 4.968071e-49 | -8.615850e-47 |
| Msa0260590 | Msa0973230 | 0.801366 | 9.316948e-49 | -8.615850e-47 |
| Msa0260590 | Msa0978000 | 0.807858 | 4.116110e-50 | -8.615850e-47 |
| Msa0260590 | Msa1072350 | 0.815986 | 6.977741e-52 | -8.615850e-47 |
| Msa0260590 | Msa1118140 | 0.808369 | 3.204371e-50 | -8.615850e-47 |
| Msa0260590 | Msa1274310 | 0.808738 | 2.672907e-50 | -8.615850e-47 |
| Msa0260590 | Msa1343770 | 0.803458 | 3.452252e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260590 | MtrunA17_Chr2g0332141 | 91.667 | 120 | 10 | 0 | 102 | 221 | 4 | 123 | 2.58e-80 | 236 |
| Msa0260590 | MtrunA17_Chr1g0190711 | 42.793 | 222 | 83 | 7 | 24 | 202 | 17 | 237 | 1.85e-48 | 159 |
| Msa0260590 | MtrunA17_Chr6g0486121 | 39.224 | 232 | 91 | 9 | 17 | 202 | 11 | 238 | 2.94e-46 | 154 |
| Msa0260590 | MtrunA17_Chr1g0184791 | 42.793 | 222 | 79 | 11 | 23 | 202 | 14 | 229 | 1.38e-44 | 149 |
| Msa0260590 | MtrunA17_Chr1g0187921 | 43.056 | 216 | 81 | 8 | 24 | 202 | 10 | 220 | 2.54e-44 | 148 |
| Msa0260590 | MtrunA17_Chr7g0260641 | 41.850 | 227 | 79 | 9 | 24 | 202 | 13 | 234 | 1.08e-43 | 147 |
| Msa0260590 | MtrunA17_Chr8g0390281 | 45.122 | 164 | 63 | 4 | 63 | 202 | 117 | 277 | 5.02e-41 | 141 |
| Msa0260590 | MtrunA17_Chr1g0187961 | 43.617 | 188 | 71 | 7 | 24 | 202 | 13 | 174 | 1.39e-40 | 137 |
| Msa0260590 | MtrunA17_Chr1g0166011 | 40.741 | 189 | 83 | 6 | 27 | 202 | 6 | 178 | 1.04e-39 | 134 |
| Msa0260590 | MtrunA17_Chr5g0428141 | 43.787 | 169 | 69 | 6 | 73 | 219 | 183 | 347 | 7.25e-39 | 137 |
| Msa0260590 | MtrunA17_Chr1g0184801 | 39.796 | 196 | 89 | 5 | 24 | 202 | 14 | 197 | 9.19e-39 | 133 |
| Msa0260590 | MtrunA17_Chr7g0260621 | 41.089 | 202 | 77 | 8 | 25 | 202 | 14 | 197 | 3.21e-38 | 131 |
| Msa0260590 | MtrunA17_Chr5g0411501 | 39.655 | 174 | 76 | 5 | 68 | 216 | 163 | 332 | 2.30e-37 | 132 |
| Msa0260590 | MtrunA17_Chr2g0331411 | 39.691 | 194 | 78 | 6 | 51 | 219 | 147 | 326 | 4.09e-37 | 132 |
| Msa0260590 | MtrunA17_Chr8g0366881 | 41.139 | 158 | 65 | 5 | 83 | 216 | 192 | 345 | 4.05e-35 | 127 |
| Msa0260590 | MtrunA17_Chr4g0004181 | 38.660 | 194 | 88 | 6 | 24 | 214 | 8 | 173 | 1.05e-30 | 111 |
| Msa0260590 | MtrunA17_Chr2g0330951 | 32.515 | 163 | 68 | 2 | 82 | 202 | 92 | 254 | 7.23e-22 | 90.5 |
| Msa0260590 | MtrunA17_Chr8g0340731 | 34.078 | 179 | 79 | 5 | 61 | 202 | 84 | 260 | 9.29e-22 | 90.5 |
| Msa0260590 | MtrunA17_Chr1g0183251 | 41.667 | 108 | 54 | 2 | 106 | 204 | 147 | 254 | 1.39e-20 | 87.4 |
| Msa0260590 | MtrunA17_Chr4g0069561 | 33.083 | 133 | 72 | 4 | 70 | 197 | 58 | 178 | 1.53e-19 | 82.4 |
| Msa0260590 | MtrunA17_Chr1g0193861 | 30.328 | 122 | 69 | 3 | 81 | 197 | 58 | 168 | 3.19e-14 | 68.2 |
| Msa0260590 | MtrunA17_Chr7g0270851 | 33.663 | 101 | 59 | 2 | 97 | 197 | 61 | 153 | 5.31e-14 | 67.4 |
| Msa0260590 | MtrunA17_Chr4g0064131 | 31.915 | 141 | 62 | 4 | 77 | 200 | 83 | 206 | 9.37e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260590 | AT1G04250.1 | 45.116 | 215 | 87 | 8 | 24 | 210 | 9 | 220 | 3.44e-52 | 168 |
| Msa0260590 | AT4G14550.1 | 44.651 | 215 | 78 | 8 | 24 | 202 | 3 | 212 | 2.78e-50 | 163 |
| Msa0260590 | AT4G14550.2 | 44.651 | 215 | 78 | 8 | 24 | 202 | 3 | 212 | 4.48e-50 | 163 |
| Msa0260590 | AT3G04730.1 | 42.986 | 221 | 80 | 7 | 24 | 202 | 4 | 220 | 2.69e-47 | 156 |
| Msa0260590 | AT3G23050.1 | 43.498 | 223 | 78 | 9 | 24 | 202 | 8 | 226 | 1.58e-45 | 152 |
| Msa0260590 | AT4G14550.3 | 42.424 | 198 | 73 | 8 | 24 | 185 | 3 | 195 | 2.98e-40 | 137 |
| Msa0260590 | AT1G04240.1 | 40.212 | 189 | 89 | 5 | 24 | 202 | 7 | 181 | 7.01e-39 | 133 |
| Msa0260590 | AT3G23030.1 | 41.304 | 184 | 84 | 7 | 19 | 202 | 7 | 166 | 1.80e-38 | 131 |
| Msa0260590 | AT4G29080.1 | 35.521 | 259 | 89 | 8 | 18 | 202 | 35 | 289 | 4.01e-38 | 134 |
| Msa0260590 | AT3G23030.2 | 41.304 | 184 | 84 | 7 | 19 | 202 | 94 | 253 | 1.04e-37 | 132 |
| Msa0260590 | AT5G43700.1 | 38.503 | 187 | 85 | 6 | 24 | 202 | 13 | 177 | 1.31e-37 | 129 |
| Msa0260590 | AT1G04240.2 | 40.212 | 189 | 89 | 5 | 24 | 202 | 107 | 281 | 1.48e-37 | 132 |
| Msa0260590 | AT3G23050.2 | 39.623 | 212 | 70 | 9 | 24 | 186 | 8 | 210 | 1.21e-35 | 125 |
| Msa0260590 | AT3G15540.1 | 39.109 | 202 | 86 | 9 | 24 | 208 | 8 | 189 | 6.55e-35 | 123 |
| Msa0260590 | AT5G65670.1 | 44.604 | 139 | 54 | 5 | 82 | 198 | 179 | 316 | 7.19e-35 | 127 |
| Msa0260590 | AT5G65670.2 | 42.038 | 157 | 67 | 6 | 82 | 216 | 179 | 333 | 7.68e-35 | 126 |
| Msa0260590 | AT2G22670.5 | 36.946 | 203 | 91 | 7 | 32 | 209 | 119 | 309 | 1.77e-34 | 125 |
| Msa0260590 | AT2G22670.2 | 36.946 | 203 | 91 | 7 | 32 | 209 | 119 | 309 | 1.77e-34 | 125 |
| Msa0260590 | AT1G15580.1 | 40.110 | 182 | 67 | 6 | 24 | 198 | 10 | 156 | 2.22e-34 | 120 |
| Msa0260590 | AT1G52830.1 | 37.368 | 190 | 102 | 5 | 24 | 208 | 8 | 185 | 2.76e-34 | 121 |
| Msa0260590 | AT2G22670.3 | 36.735 | 196 | 88 | 6 | 32 | 202 | 119 | 303 | 1.11e-33 | 123 |
| Msa0260590 | AT2G22670.1 | 36.735 | 196 | 88 | 6 | 32 | 202 | 119 | 303 | 1.11e-33 | 123 |
| Msa0260590 | AT2G22670.4 | 36.735 | 196 | 88 | 6 | 32 | 202 | 136 | 320 | 1.49e-33 | 123 |
| Msa0260590 | AT4G14560.1 | 39.583 | 192 | 84 | 9 | 14 | 202 | 1 | 163 | 3.94e-33 | 117 |
| Msa0260590 | AT3G16500.1 | 33.188 | 229 | 104 | 7 | 19 | 202 | 28 | 252 | 5.80e-27 | 104 |
| Msa0260590 | AT3G16500.2 | 33.188 | 229 | 104 | 7 | 19 | 202 | 28 | 252 | 7.80e-27 | 103 |
| Msa0260590 | AT1G51950.1 | 31.481 | 216 | 105 | 4 | 25 | 202 | 40 | 250 | 3.11e-24 | 97.4 |
| Msa0260590 | AT4G14550.4 | 40.268 | 149 | 54 | 5 | 24 | 141 | 3 | 147 | 5.34e-23 | 92.0 |
| Msa0260590 | AT2G33310.2 | 37.838 | 148 | 81 | 5 | 65 | 204 | 85 | 229 | 2.25e-22 | 92.0 |
| Msa0260590 | AT2G33310.3 | 37.838 | 148 | 81 | 5 | 65 | 204 | 84 | 228 | 2.35e-22 | 91.7 |
| Msa0260590 | AT2G33310.1 | 37.838 | 148 | 81 | 5 | 65 | 204 | 84 | 228 | 2.35e-22 | 91.7 |
| Msa0260590 | AT1G80390.1 | 45.378 | 119 | 43 | 5 | 27 | 139 | 19 | 121 | 7.50e-22 | 87.4 |
| Msa0260590 | AT3G17600.1 | 32.000 | 150 | 73 | 4 | 62 | 197 | 18 | 152 | 2.10e-21 | 87.0 |
| Msa0260590 | AT1G04550.2 | 29.897 | 194 | 80 | 7 | 50 | 202 | 41 | 219 | 7.80e-21 | 87.8 |
| Msa0260590 | AT5G25890.1 | 34.884 | 129 | 55 | 2 | 87 | 201 | 49 | 162 | 1.92e-20 | 85.1 |
| Msa0260590 | AT4G28640.3 | 34.667 | 150 | 65 | 3 | 86 | 202 | 88 | 237 | 2.73e-20 | 86.3 |
| Msa0260590 | AT4G28640.1 | 34.667 | 150 | 65 | 3 | 86 | 202 | 88 | 237 | 3.48e-20 | 85.9 |
| Msa0260590 | AT3G23050.3 | 36.875 | 160 | 53 | 6 | 24 | 141 | 8 | 161 | 2.15e-19 | 82.0 |
| Msa0260590 | AT4G28640.2 | 34.667 | 150 | 65 | 3 | 86 | 202 | 88 | 237 | 2.28e-19 | 84.7 |
| Msa0260590 | AT1G04100.1 | 40.952 | 105 | 48 | 3 | 107 | 201 | 154 | 254 | 1.05e-17 | 79.7 |
| Msa0260590 | AT3G62100.1 | 40.217 | 92 | 46 | 2 | 106 | 197 | 84 | 166 | 6.08e-16 | 73.2 |
| Msa0260590 | AT2G46990.1 | 37.634 | 93 | 47 | 2 | 106 | 197 | 86 | 168 | 2.93e-15 | 71.2 |
| Msa0260590 | AT4G32280.2 | 36.559 | 93 | 45 | 1 | 106 | 198 | 119 | 197 | 3.20e-14 | 69.3 |
| Msa0260590 | AT4G32280.1 | 36.559 | 93 | 45 | 1 | 106 | 198 | 161 | 239 | 8.69e-14 | 68.9 |
| Msa0260590 | AT3G62100.2 | 40.741 | 81 | 39 | 2 | 106 | 186 | 84 | 155 | 1.46e-11 | 60.8 |
| Msa0260590 | AT2G46990.2 | 39.024 | 82 | 39 | 2 | 106 | 186 | 86 | 157 | 2.48e-11 | 60.5 |
Find 75 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGGAGGACAATATTGATTT+TGG | 0.202496 | 2_2:-58279564 | Msa0260590:intron |
| CGTTCAAAGTTGTGTATATT+AGG | 0.211169 | 2_2:+58280690 | None:intergenic |
| GCTATAAAATGGACCGGGTT+TGG | 0.277811 | 2_2:-58279248 | Msa0260590:three_prime_UTR |
| AAAAGACTCTAGCTATAAAA+TGG | 0.286074 | 2_2:-58279259 | Msa0260590:three_prime_UTR |
| AACCAGGGGTGGTCTTTATT+AGG | 0.300336 | 2_2:-58279215 | Msa0260590:three_prime_UTR |
| TGAGCAAGTAATTGTCCATT+AGG | 0.316383 | 2_2:+58279073 | None:intergenic |
| GATGAATGAGAAGAAATTCA+TGG | 0.319723 | 2_2:-58279909 | Msa0260590:CDS |
| CTATAAAATGGACCGGGTTT+GGG | 0.321469 | 2_2:-58279247 | Msa0260590:three_prime_UTR |
| TTGAATCATGTAAGAGGATA+AGG | 0.340536 | 2_2:-58279599 | Msa0260590:CDS |
| CTTATTATTCGTACATTCAA+TGG | 0.347580 | 2_2:+58280584 | None:intergenic |
| TAATAAGATGAATATTATTC+AGG | 0.355657 | 2_2:-58280568 | Msa0260590:CDS |
| GGTTCTTACTTTGATGTTGT+TGG | 0.366642 | 2_2:+58280384 | None:intergenic |
| GTTCTTACTTTGATGTTGTT+GGG | 0.367350 | 2_2:+58280385 | None:intergenic |
| CTCACTGGAGGCCGTACATC+TGG | 0.369783 | 2_2:+58279427 | None:intergenic |
| GAGCTTACCCTTGGTCTTCC+CGG | 0.380531 | 2_2:-58280540 | Msa0260590:CDS |
| TACGTGAAAGTTGCGGTTGA+TGG | 0.380805 | 2_2:-58280192 | Msa0260590:CDS |
| GTTTGGGTGCAGTTGGAACC+AGG | 0.383484 | 2_2:-58279231 | Msa0260590:three_prime_UTR |
| TGAGAATGATTAGTTTCTAT+TGG | 0.397999 | 2_2:+58279032 | None:intergenic |
| TTGGGTGCAGTTGGAACCAG+GGG | 0.404325 | 2_2:-58279229 | Msa0260590:three_prime_UTR |
| GAGCAAGTAATTGTCCATTA+GGG | 0.435225 | 2_2:+58279074 | None:intergenic |
| CTTTGAGAAATGATTACATC+AGG | 0.440422 | 2_2:-58279157 | Msa0260590:three_prime_UTR |
| ATGGTGACTGGATGTTGCTT+GGG | 0.460851 | 2_2:-58279838 | Msa0260590:CDS |
| ACATGTGGTGGGATGGCCAC+CGG | 0.463192 | 2_2:-58280253 | Msa0260590:CDS |
| TATATAACTCAATGTGGTTA+CGG | 0.469542 | 2_2:+58280648 | None:intergenic |
| GGTGGGATGGCCACCGGTGA+GGG | 0.473868 | 2_2:-58280247 | Msa0260590:CDS |
| AATAGTATATAAAACCCTAA+TGG | 0.484093 | 2_2:-58279088 | Msa0260590:three_prime_UTR |
| TTTATCAACCTCCAACTTGT+GGG | 0.484171 | 2_2:+58278992 | None:intergenic |
| ACTCTAGCTATAAAATGGAC+CGG | 0.484208 | 2_2:-58279254 | Msa0260590:three_prime_UTR |
| TGTTTGTTGAATCATGTAAG+AGG | 0.487798 | 2_2:-58279605 | Msa0260590:CDS |
| TGATGTTGTTGGGAATTTAG+TGG | 0.488099 | 2_2:+58280395 | None:intergenic |
| GGTGCAGTTGGAACCAGGGG+TGG | 0.495977 | 2_2:-58279226 | Msa0260590:three_prime_UTR |
| CAAGATAAAATGAACAATAG+AGG | 0.499260 | 2_2:-58279189 | Msa0260590:three_prime_UTR |
| GCTATAATTATTCTTCTCAC+TGG | 0.500501 | 2_2:+58279412 | None:intergenic |
| TGGAGCTTGTACACTTTGAA+AGG | 0.503826 | 2_2:+58279327 | None:intergenic |
| TGGTGGGATGGCCACCGGTG+AGG | 0.504156 | 2_2:-58280248 | Msa0260590:CDS |
| ATGAGAAGTACTAGAAGTTG+AGG | 0.504166 | 2_2:+58280446 | None:intergenic |
| GATGGTGACTGGATGTTGCT+TGG | 0.516052 | 2_2:-58279839 | Msa0260590:CDS |
| CAGGAGACTGAGCTTACCCT+TGG | 0.519336 | 2_2:-58280549 | Msa0260590:CDS |
| TATATATGAACTTACTTCCA+TGG | 0.525569 | 2_2:+58279809 | None:intergenic |
| TTTGGGTGCAGTTGGAACCA+GGG | 0.526314 | 2_2:-58279230 | Msa0260590:three_prime_UTR |
| GGACCGGGTTTGGGTGCAGT+TGG | 0.527922 | 2_2:-58279238 | Msa0260590:three_prime_UTR |
| TTCCTAATAAAGACCACCCC+TGG | 0.529842 | 2_2:+58279213 | None:intergenic |
| AGCTCCATATCTAAGAAAAG+TGG | 0.534799 | 2_2:-58280169 | Msa0260590:CDS |
| TGCATGCAGGGAACATGTGG+TGG | 0.534930 | 2_2:-58280265 | Msa0260590:intron |
| GTTCCAACTGCACCCAAACC+CGG | 0.536898 | 2_2:+58279235 | None:intergenic |
| GCAGGGAACATGTGGTGGGA+TGG | 0.542566 | 2_2:-58280260 | Msa0260590:intron |
| TGTTGCAGGTTCCAGATGTA+CGG | 0.542574 | 2_2:-58279438 | Msa0260590:intron |
| TTCCTACTTGCCCTCACCGG+TGG | 0.558621 | 2_2:+58280237 | None:intergenic |
| CTCTAGCTATAAAATGGACC+GGG | 0.559995 | 2_2:-58279253 | Msa0260590:three_prime_UTR |
| ATAATTATTCTTCTCACTGG+AGG | 0.565078 | 2_2:+58279415 | None:intergenic |
| ACGAAGATAAAGATGGTGAC+TGG | 0.565436 | 2_2:-58279850 | Msa0260590:CDS |
| GCATGCAGGGAACATGTGGT+GGG | 0.566681 | 2_2:-58280264 | Msa0260590:intron |
| TATCAACCTCCAACTTGTGG+GGG | 0.569967 | 2_2:+58278994 | None:intergenic |
| GGTAGTAGTACCAAAACTGC+AGG | 0.586869 | 2_2:-58280519 | Msa0260590:CDS |
| TTATCAACCTCCAACTTGTG+GGG | 0.587139 | 2_2:+58278993 | None:intergenic |
| GATAAGGCTTATGATTAGCT+CGG | 0.592824 | 2_2:-58279583 | Msa0260590:CDS |
| GCTACATACGAAGATAAAGA+TGG | 0.600922 | 2_2:-58279857 | Msa0260590:CDS |
| CAGGTATATATACATAAGAG+AGG | 0.601747 | 2_2:-58279138 | Msa0260590:three_prime_UTR |
| TGGCAATTAGATGAAGATCA+AGG | 0.605901 | 2_2:+58280469 | None:intergenic |
| ATCAACCTCCAACTTGTGGG+GGG | 0.613816 | 2_2:+58278995 | None:intergenic |
| GGGTGCATGCAGGGAACATG+TGG | 0.617054 | 2_2:-58280268 | Msa0260590:intron |
| TACTACTACCGGGAAGACCA+AGG | 0.619025 | 2_2:+58280532 | None:intergenic |
| TTGCAAGTACGTGAAAGTTG+CGG | 0.621140 | 2_2:-58280199 | Msa0260590:CDS |
| GGCCACCGGTGAGGGCAAGT+AGG | 0.630880 | 2_2:-58280239 | Msa0260590:CDS |
| GAAGCAATTAGTAGCAAACA+TGG | 0.636180 | 2_2:+58280098 | None:intergenic |
| AGAAGTACTAGAAGTTGAGG+TGG | 0.639519 | 2_2:+58280449 | None:intergenic |
| TGTTGCTTGGGGATGCACCA+TGG | 0.646753 | 2_2:-58279826 | Msa0260590:CDS |
| AGGTATATATACATAAGAGA+GGG | 0.648408 | 2_2:-58279137 | Msa0260590:three_prime_UTR |
| ATATAGCGATGATCATAATG+TGG | 0.656981 | 2_2:+58279282 | None:intergenic |
| TCGTACATTCAATGGAACTG+TGG | 0.659415 | 2_2:+58280592 | None:intergenic |
| ACTACTACCGGGAAGACCAA+GGG | 0.663756 | 2_2:+58280533 | None:intergenic |
| ATTGTATATATAACTCAATG+TGG | 0.669958 | 2_2:+58280642 | None:intergenic |
| TGGTGACTGGATGTTGCTTG+GGG | 0.674509 | 2_2:-58279837 | Msa0260590:CDS |
| ACAATGTCATCACAAATGAG+TGG | 0.687436 | 2_2:-58280624 | Msa0260590:CDS |
| AAGGCTTATGATTAGCTCGG+AGG | 0.705152 | 2_2:-58279580 | Msa0260590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATTAATGTAAAGT+TGG | - | chr2_2:58279417-58279436 | Msa0260590:CDS | 10.0% |
| !! | AAATTAATTAATGTAAAGTT+GGG | - | chr2_2:58279418-58279437 | Msa0260590:CDS | 10.0% |
| !! | TTTATACACAATATAATTAT+AGG | - | chr2_2:58280196-58280215 | Msa0260590:CDS | 10.0% |
| !! | AAAATTAATTAATGTAAAGT+TGG | - | chr2_2:58279417-58279436 | Msa0260590:CDS | 10.0% |
| !! | AAATTAATTAATGTAAAGTT+GGG | - | chr2_2:58279418-58279437 | Msa0260590:CDS | 10.0% |
| !! | TTTATACACAATATAATTAT+AGG | - | chr2_2:58280196-58280215 | Msa0260590:CDS | 10.0% |
| !! | TAATAAGATGAATATTATTC+AGG | - | chr2_2:58279138-58279157 | Msa0260590:three_prime_UTR | 15.0% |
| !! | TATGAAACATAAAAATAACA+TGG | + | chr2_2:58279688-58279707 | None:intergenic | 15.0% |
| !!! | TAATATTTTATATTCTAGCT+AGG | - | chr2_2:58280353-58280372 | Msa0260590:intron | 15.0% |
| !! | TAATAAGATGAATATTATTC+AGG | - | chr2_2:58279138-58279157 | Msa0260590:three_prime_UTR | 15.0% |
| !! | TATGAAACATAAAAATAACA+TGG | + | chr2_2:58279688-58279707 | None:intergenic | 15.0% |
| !!! | TAATATTTTATATTCTAGCT+AGG | - | chr2_2:58280353-58280372 | Msa0260590:intron | 15.0% |
| !! | ATTGTATATATAACTCAATG+TGG | + | chr2_2:58279067-58279086 | None:intergenic | 20.0% |
| !! | AAAAAATAGGAATGAATACA+TGG | - | chr2_2:58279827-58279846 | Msa0260590:CDS | 20.0% |
| !! | TTTGATGAATATATACTCTA+AGG | + | chr2_2:58279996-58280015 | None:intergenic | 20.0% |
| !! | ATTGATTGATATCATAAGTT+TGG | - | chr2_2:58280219-58280238 | Msa0260590:CDS | 20.0% |
| !!! | TAGTACATGCTTTTTTTAAT+TGG | + | chr2_2:58280402-58280421 | None:intergenic | 20.0% |
| !! | AATAGTATATAAAACCCTAA+TGG | - | chr2_2:58280618-58280637 | Msa0260590:CDS | 20.0% |
| !! | ATTGTATATATAACTCAATG+TGG | + | chr2_2:58279067-58279086 | None:intergenic | 20.0% |
| !! | AAAAAATAGGAATGAATACA+TGG | - | chr2_2:58279827-58279846 | Msa0260590:CDS | 20.0% |
| !! | TTTGATGAATATATACTCTA+AGG | + | chr2_2:58279996-58280015 | None:intergenic | 20.0% |
| !! | ATTGATTGATATCATAAGTT+TGG | - | chr2_2:58280219-58280238 | Msa0260590:CDS | 20.0% |
| !!! | TAGTACATGCTTTTTTTAAT+TGG | + | chr2_2:58280402-58280421 | None:intergenic | 20.0% |
| !! | AATAGTATATAAAACCCTAA+TGG | - | chr2_2:58280618-58280637 | Msa0260590:CDS | 20.0% |
| ! | TATATAACTCAATGTGGTTA+CGG | + | chr2_2:58279061-58279080 | None:intergenic | 25.0% |
| ! | CTTATTATTCGTACATTCAA+TGG | + | chr2_2:58279125-58279144 | None:intergenic | 25.0% |
| ! | TACATATATGTTGTGTGTTA+TGG | - | chr2_2:58279717-58279736 | Msa0260590:intron | 25.0% |
| ! | ACATATATGTTGTGTGTTAT+GGG | - | chr2_2:58279718-58279737 | Msa0260590:intron | 25.0% |
| ! | CTGCAATAATTAATGATAGT+TGG | + | chr2_2:58279767-58279786 | None:intergenic | 25.0% |
| ! | CAACTATCATTAATTATTGC+AGG | - | chr2_2:58279765-58279784 | Msa0260590:intron | 25.0% |
| !! | TCATGGATTCTAGAAAAAAT+AGG | - | chr2_2:58279814-58279833 | Msa0260590:intron | 25.0% |
| ! | TATATATGAACTTACTTCCA+TGG | + | chr2_2:58279900-58279919 | None:intergenic | 25.0% |
| ! | AAATAATAACTAGCTGTAGA+TGG | + | chr2_2:58279929-58279948 | None:intergenic | 25.0% |
| !!! | TTTTTTTCTTTCTTTCCTCT+AGG | - | chr2_2:58280077-58280096 | Msa0260590:intron | 25.0% |
| ! | AACAATATTAGTAAATCAGG+GGG | + | chr2_2:58280252-58280271 | None:intergenic | 25.0% |
| ! | CAACAATATTAGTAAATCAG+GGG | + | chr2_2:58280253-58280272 | None:intergenic | 25.0% |
| ! | GCAACAATATTAGTAAATCA+GGG | + | chr2_2:58280254-58280273 | None:intergenic | 25.0% |
| ! | TGCAACAATATTAGTAAATC+AGG | + | chr2_2:58280255-58280274 | None:intergenic | 25.0% |
| ! | TGATTTACTAATATTGTTGC+AGG | - | chr2_2:58280254-58280273 | Msa0260590:CDS | 25.0% |
| ! | AAAAGACTCTAGCTATAAAA+TGG | - | chr2_2:58280447-58280466 | Msa0260590:CDS | 25.0% |
| ! | CAAGATAAAATGAACAATAG+AGG | - | chr2_2:58280517-58280536 | Msa0260590:CDS | 25.0% |
| ! | AGGTATATATACATAAGAGA+GGG | - | chr2_2:58280569-58280588 | Msa0260590:CDS | 25.0% |
| !!! | TGAGAATGATTAGTTTCTAT+TGG | + | chr2_2:58280677-58280696 | None:intergenic | 25.0% |
| ! | TATATAACTCAATGTGGTTA+CGG | + | chr2_2:58279061-58279080 | None:intergenic | 25.0% |
| ! | CTTATTATTCGTACATTCAA+TGG | + | chr2_2:58279125-58279144 | None:intergenic | 25.0% |
| ! | TACATATATGTTGTGTGTTA+TGG | - | chr2_2:58279717-58279736 | Msa0260590:intron | 25.0% |
| ! | ACATATATGTTGTGTGTTAT+GGG | - | chr2_2:58279718-58279737 | Msa0260590:intron | 25.0% |
| ! | CTGCAATAATTAATGATAGT+TGG | + | chr2_2:58279767-58279786 | None:intergenic | 25.0% |
| ! | CAACTATCATTAATTATTGC+AGG | - | chr2_2:58279765-58279784 | Msa0260590:intron | 25.0% |
| !! | TCATGGATTCTAGAAAAAAT+AGG | - | chr2_2:58279814-58279833 | Msa0260590:intron | 25.0% |
| ! | TATATATGAACTTACTTCCA+TGG | + | chr2_2:58279900-58279919 | None:intergenic | 25.0% |
| ! | AAATAATAACTAGCTGTAGA+TGG | + | chr2_2:58279929-58279948 | None:intergenic | 25.0% |
| !!! | TTTTTTTCTTTCTTTCCTCT+AGG | - | chr2_2:58280077-58280096 | Msa0260590:intron | 25.0% |
| ! | AACAATATTAGTAAATCAGG+GGG | + | chr2_2:58280252-58280271 | None:intergenic | 25.0% |
| ! | CAACAATATTAGTAAATCAG+GGG | + | chr2_2:58280253-58280272 | None:intergenic | 25.0% |
| ! | GCAACAATATTAGTAAATCA+GGG | + | chr2_2:58280254-58280273 | None:intergenic | 25.0% |
| ! | TGCAACAATATTAGTAAATC+AGG | + | chr2_2:58280255-58280274 | None:intergenic | 25.0% |
| ! | TGATTTACTAATATTGTTGC+AGG | - | chr2_2:58280254-58280273 | Msa0260590:CDS | 25.0% |
| ! | AAAAGACTCTAGCTATAAAA+TGG | - | chr2_2:58280447-58280466 | Msa0260590:CDS | 25.0% |
| ! | CAAGATAAAATGAACAATAG+AGG | - | chr2_2:58280517-58280536 | Msa0260590:CDS | 25.0% |
| ! | AGGTATATATACATAAGAGA+GGG | - | chr2_2:58280569-58280588 | Msa0260590:CDS | 25.0% |
| !!! | TGAGAATGATTAGTTTCTAT+TGG | + | chr2_2:58280677-58280696 | None:intergenic | 25.0% |
| CGTTCAAAGTTGTGTATATT+AGG | + | chr2_2:58279019-58279038 | None:intergenic | 30.0% | |
| GTTCTTACTTTGATGTTGTT+GGG | + | chr2_2:58279324-58279343 | None:intergenic | 30.0% | |
| ACTAGCTAGCTATATATGTA+CGG | + | chr2_2:58279346-58279365 | None:intergenic | 30.0% | |
| !! | AGATCCACTTTTCTTAGATA+TGG | + | chr2_2:58279544-58279563 | None:intergenic | 30.0% |
| GATGAATGAGAAGAAATTCA+TGG | - | chr2_2:58279797-58279816 | Msa0260590:intron | 30.0% | |
| ! | TGTTTGTTGAATCATGTAAG+AGG | - | chr2_2:58280101-58280120 | Msa0260590:CDS | 30.0% |
| TTGAATCATGTAAGAGGATA+AGG | - | chr2_2:58280107-58280126 | Msa0260590:CDS | 30.0% | |
| !!! | AGGACAATATTGATTTTGGT+TGG | - | chr2_2:58280146-58280165 | Msa0260590:CDS | 30.0% |
| ATAATTATTCTTCTCACTGG+AGG | + | chr2_2:58280294-58280313 | None:intergenic | 30.0% | |
| GCTATAATTATTCTTCTCAC+TGG | + | chr2_2:58280297-58280316 | None:intergenic | 30.0% | |
| ATATAGCGATGATCATAATG+TGG | + | chr2_2:58280427-58280446 | None:intergenic | 30.0% | |
| ! | CTTTGAGAAATGATTACATC+AGG | - | chr2_2:58280549-58280568 | Msa0260590:CDS | 30.0% |
| CAGGTATATATACATAAGAG+AGG | - | chr2_2:58280568-58280587 | Msa0260590:CDS | 30.0% | |
| CGTTCAAAGTTGTGTATATT+AGG | + | chr2_2:58279019-58279038 | None:intergenic | 30.0% | |
| GTTCTTACTTTGATGTTGTT+GGG | + | chr2_2:58279324-58279343 | None:intergenic | 30.0% | |
| ACTAGCTAGCTATATATGTA+CGG | + | chr2_2:58279346-58279365 | None:intergenic | 30.0% | |
| !! | AGATCCACTTTTCTTAGATA+TGG | + | chr2_2:58279544-58279563 | None:intergenic | 30.0% |
| GATGAATGAGAAGAAATTCA+TGG | - | chr2_2:58279797-58279816 | Msa0260590:intron | 30.0% | |
| ! | TGTTTGTTGAATCATGTAAG+AGG | - | chr2_2:58280101-58280120 | Msa0260590:CDS | 30.0% |
| TTGAATCATGTAAGAGGATA+AGG | - | chr2_2:58280107-58280126 | Msa0260590:CDS | 30.0% | |
| !!! | AGGACAATATTGATTTTGGT+TGG | - | chr2_2:58280146-58280165 | Msa0260590:CDS | 30.0% |
| ATAATTATTCTTCTCACTGG+AGG | + | chr2_2:58280294-58280313 | None:intergenic | 30.0% | |
| GCTATAATTATTCTTCTCAC+TGG | + | chr2_2:58280297-58280316 | None:intergenic | 30.0% | |
| ATATAGCGATGATCATAATG+TGG | + | chr2_2:58280427-58280446 | None:intergenic | 30.0% | |
| ! | CTTTGAGAAATGATTACATC+AGG | - | chr2_2:58280549-58280568 | Msa0260590:CDS | 30.0% |
| CAGGTATATATACATAAGAG+AGG | - | chr2_2:58280568-58280587 | Msa0260590:CDS | 30.0% | |
| ACAATGTCATCACAAATGAG+TGG | - | chr2_2:58279082-58279101 | Msa0260590:three_prime_UTR | 35.0% | |
| TGGCAATTAGATGAAGATCA+AGG | + | chr2_2:58279240-58279259 | None:intergenic | 35.0% | |
| !! | ATGAGAAGTACTAGAAGTTG+AGG | + | chr2_2:58279263-58279282 | None:intergenic | 35.0% |
| TGATGTTGTTGGGAATTTAG+TGG | + | chr2_2:58279314-58279333 | None:intergenic | 35.0% | |
| GGTTCTTACTTTGATGTTGT+TGG | + | chr2_2:58279325-58279344 | None:intergenic | 35.0% | |
| ATATAGCTAGCTAGTTAGCT+AGG | - | chr2_2:58279351-58279370 | Msa0260590:three_prime_UTR | 35.0% | |
| AGGGCAAGTAGGAAAAATAT+TGG | - | chr2_2:58279478-58279497 | Msa0260590:intron | 35.0% | |
| AGCTCCATATCTAAGAAAAG+TGG | - | chr2_2:58279537-58279556 | Msa0260590:intron | 35.0% | |
| GAAGCAATTAGTAGCAAACA+TGG | + | chr2_2:58279611-58279630 | None:intergenic | 35.0% | |
| GCTACATACGAAGATAAAGA+TGG | - | chr2_2:58279849-58279868 | Msa0260590:CDS | 35.0% | |
| TGATTCAACAAACATCCTAG+AGG | + | chr2_2:58280095-58280114 | None:intergenic | 35.0% | |
| ! | GATAAGGCTTATGATTAGCT+CGG | - | chr2_2:58280123-58280142 | Msa0260590:CDS | 35.0% |
| !!! | TCGGAGGACAATATTGATTT+TGG | - | chr2_2:58280142-58280161 | Msa0260590:CDS | 35.0% |
| ACTCTAGCTATAAAATGGAC+CGG | - | chr2_2:58280452-58280471 | Msa0260590:CDS | 35.0% | |
| GAGCAAGTAATTGTCCATTA+GGG | + | chr2_2:58280635-58280654 | None:intergenic | 35.0% | |
| TGAGCAAGTAATTGTCCATT+AGG | + | chr2_2:58280636-58280655 | None:intergenic | 35.0% | |
| ACAATGTCATCACAAATGAG+TGG | - | chr2_2:58279082-58279101 | Msa0260590:three_prime_UTR | 35.0% | |
| TGGCAATTAGATGAAGATCA+AGG | + | chr2_2:58279240-58279259 | None:intergenic | 35.0% | |
| !! | ATGAGAAGTACTAGAAGTTG+AGG | + | chr2_2:58279263-58279282 | None:intergenic | 35.0% |
| TGATGTTGTTGGGAATTTAG+TGG | + | chr2_2:58279314-58279333 | None:intergenic | 35.0% | |
| GGTTCTTACTTTGATGTTGT+TGG | + | chr2_2:58279325-58279344 | None:intergenic | 35.0% | |
| ATATAGCTAGCTAGTTAGCT+AGG | - | chr2_2:58279351-58279370 | Msa0260590:three_prime_UTR | 35.0% | |
| AGGGCAAGTAGGAAAAATAT+TGG | - | chr2_2:58279478-58279497 | Msa0260590:intron | 35.0% | |
| AGCTCCATATCTAAGAAAAG+TGG | - | chr2_2:58279537-58279556 | Msa0260590:intron | 35.0% | |
| GAAGCAATTAGTAGCAAACA+TGG | + | chr2_2:58279611-58279630 | None:intergenic | 35.0% | |
| GCTACATACGAAGATAAAGA+TGG | - | chr2_2:58279849-58279868 | Msa0260590:CDS | 35.0% | |
| TGATTCAACAAACATCCTAG+AGG | + | chr2_2:58280095-58280114 | None:intergenic | 35.0% | |
| ! | GATAAGGCTTATGATTAGCT+CGG | - | chr2_2:58280123-58280142 | Msa0260590:CDS | 35.0% |
| !!! | TCGGAGGACAATATTGATTT+TGG | - | chr2_2:58280142-58280161 | Msa0260590:CDS | 35.0% |
| ACTCTAGCTATAAAATGGAC+CGG | - | chr2_2:58280452-58280471 | Msa0260590:CDS | 35.0% | |
| GAGCAAGTAATTGTCCATTA+GGG | + | chr2_2:58280635-58280654 | None:intergenic | 35.0% | |
| TGAGCAAGTAATTGTCCATT+AGG | + | chr2_2:58280636-58280655 | None:intergenic | 35.0% | |
| TCGTACATTCAATGGAACTG+TGG | + | chr2_2:58279117-58279136 | None:intergenic | 40.0% | |
| !! | TGCAGTTTTGGTACTACTAC+CGG | + | chr2_2:58279188-58279207 | None:intergenic | 40.0% |
| ! | ACGTTTTATGCCTGCAGTTT+TGG | + | chr2_2:58279200-58279219 | None:intergenic | 40.0% |
| !! | AGAAGTACTAGAAGTTGAGG+TGG | + | chr2_2:58279260-58279279 | None:intergenic | 40.0% |
| TTGCAAGTACGTGAAAGTTG+CGG | - | chr2_2:58279507-58279526 | Msa0260590:intron | 40.0% | |
| ACGAAGATAAAGATGGTGAC+TGG | - | chr2_2:58279856-58279875 | Msa0260590:CDS | 40.0% | |
| TGGAGCTTGTACACTTTGAA+AGG | + | chr2_2:58280382-58280401 | None:intergenic | 40.0% | |
| CTCTAGCTATAAAATGGACC+GGG | - | chr2_2:58280453-58280472 | Msa0260590:CDS | 40.0% | |
| CTATAAAATGGACCGGGTTT+GGG | - | chr2_2:58280459-58280478 | Msa0260590:CDS | 40.0% | |
| TCGTACATTCAATGGAACTG+TGG | + | chr2_2:58279117-58279136 | None:intergenic | 40.0% | |
| !! | TGCAGTTTTGGTACTACTAC+CGG | + | chr2_2:58279188-58279207 | None:intergenic | 40.0% |
| ! | ACGTTTTATGCCTGCAGTTT+TGG | + | chr2_2:58279200-58279219 | None:intergenic | 40.0% |
| !! | AGAAGTACTAGAAGTTGAGG+TGG | + | chr2_2:58279260-58279279 | None:intergenic | 40.0% |
| TTGCAAGTACGTGAAAGTTG+CGG | - | chr2_2:58279507-58279526 | Msa0260590:intron | 40.0% | |
| ACGAAGATAAAGATGGTGAC+TGG | - | chr2_2:58279856-58279875 | Msa0260590:CDS | 40.0% | |
| TGGAGCTTGTACACTTTGAA+AGG | + | chr2_2:58280382-58280401 | None:intergenic | 40.0% | |
| CTCTAGCTATAAAATGGACC+GGG | - | chr2_2:58280453-58280472 | Msa0260590:CDS | 40.0% | |
| CTATAAAATGGACCGGGTTT+GGG | - | chr2_2:58280459-58280478 | Msa0260590:CDS | 40.0% | |
| !! | GCAGTTTTGGTACTACTACC+GGG | + | chr2_2:58279187-58279206 | None:intergenic | 45.0% |
| GGTAGTAGTACCAAAACTGC+AGG | - | chr2_2:58279187-58279206 | Msa0260590:three_prime_UTR | 45.0% | |
| ATGTAAAGTTGGGTGCATGC+AGG | - | chr2_2:58279428-58279447 | Msa0260590:CDS | 45.0% | |
| TGTAAAGTTGGGTGCATGCA+GGG | - | chr2_2:58279429-58279448 | Msa0260590:CDS | 45.0% | |
| ! | TTTTTCCTACTTGCCCTCAC+CGG | + | chr2_2:58279475-58279494 | None:intergenic | 45.0% |
| TACGTGAAAGTTGCGGTTGA+TGG | - | chr2_2:58279514-58279533 | Msa0260590:intron | 45.0% | |
| ! | ATGGTGACTGGATGTTGCTT+GGG | - | chr2_2:58279868-58279887 | Msa0260590:CDS | 45.0% |
| ! | AAGGCTTATGATTAGCTCGG+AGG | - | chr2_2:58280126-58280145 | Msa0260590:CDS | 45.0% |
| TGTTGCAGGTTCCAGATGTA+CGG | - | chr2_2:58280268-58280287 | Msa0260590:intron | 45.0% | |
| GCTATAAAATGGACCGGGTT+TGG | - | chr2_2:58280458-58280477 | Msa0260590:CDS | 45.0% | |
| AACCAGGGGTGGTCTTTATT+AGG | - | chr2_2:58280491-58280510 | Msa0260590:CDS | 45.0% | |
| TTCCTAATAAAGACCACCCC+TGG | + | chr2_2:58280496-58280515 | None:intergenic | 45.0% | |
| !! | GCAGTTTTGGTACTACTACC+GGG | + | chr2_2:58279187-58279206 | None:intergenic | 45.0% |
| GGTAGTAGTACCAAAACTGC+AGG | - | chr2_2:58279187-58279206 | Msa0260590:three_prime_UTR | 45.0% | |
| ATGTAAAGTTGGGTGCATGC+AGG | - | chr2_2:58279428-58279447 | Msa0260590:CDS | 45.0% | |
| TGTAAAGTTGGGTGCATGCA+GGG | - | chr2_2:58279429-58279448 | Msa0260590:CDS | 45.0% | |
| ! | TTTTTCCTACTTGCCCTCAC+CGG | + | chr2_2:58279475-58279494 | None:intergenic | 45.0% |
| TACGTGAAAGTTGCGGTTGA+TGG | - | chr2_2:58279514-58279533 | Msa0260590:intron | 45.0% | |
| ! | ATGGTGACTGGATGTTGCTT+GGG | - | chr2_2:58279868-58279887 | Msa0260590:CDS | 45.0% |
| ! | AAGGCTTATGATTAGCTCGG+AGG | - | chr2_2:58280126-58280145 | Msa0260590:CDS | 45.0% |
| TGTTGCAGGTTCCAGATGTA+CGG | - | chr2_2:58280268-58280287 | Msa0260590:intron | 45.0% | |
| GCTATAAAATGGACCGGGTT+TGG | - | chr2_2:58280458-58280477 | Msa0260590:CDS | 45.0% | |
| AACCAGGGGTGGTCTTTATT+AGG | - | chr2_2:58280491-58280510 | Msa0260590:CDS | 45.0% | |
| TTCCTAATAAAGACCACCCC+TGG | + | chr2_2:58280496-58280515 | None:intergenic | 45.0% | |
| ACTACTACCGGGAAGACCAA+GGG | + | chr2_2:58279176-58279195 | None:intergenic | 50.0% | |
| TACTACTACCGGGAAGACCA+AGG | + | chr2_2:58279177-58279196 | None:intergenic | 50.0% | |
| GATGGTGACTGGATGTTGCT+TGG | - | chr2_2:58279867-58279886 | Msa0260590:CDS | 50.0% | |
| ! | TGGTGACTGGATGTTGCTTG+GGG | - | chr2_2:58279869-58279888 | Msa0260590:CDS | 50.0% |
| TTTGGGTGCAGTTGGAACCA+GGG | - | chr2_2:58280476-58280495 | Msa0260590:CDS | 50.0% | |
| ACTACTACCGGGAAGACCAA+GGG | + | chr2_2:58279176-58279195 | None:intergenic | 50.0% | |
| TACTACTACCGGGAAGACCA+AGG | + | chr2_2:58279177-58279196 | None:intergenic | 50.0% | |
| GATGGTGACTGGATGTTGCT+TGG | - | chr2_2:58279867-58279886 | Msa0260590:CDS | 50.0% | |
| ! | TGGTGACTGGATGTTGCTTG+GGG | - | chr2_2:58279869-58279888 | Msa0260590:CDS | 50.0% |
| TTTGGGTGCAGTTGGAACCA+GGG | - | chr2_2:58280476-58280495 | Msa0260590:CDS | 50.0% | |
| CAGGAGACTGAGCTTACCCT+TGG | - | chr2_2:58279157-58279176 | Msa0260590:three_prime_UTR | 55.0% | |
| ! | GAGCTTACCCTTGGTCTTCC+CGG | - | chr2_2:58279166-58279185 | Msa0260590:three_prime_UTR | 55.0% |
| TGCATGCAGGGAACATGTGG+TGG | - | chr2_2:58279441-58279460 | Msa0260590:intron | 55.0% | |
| GCATGCAGGGAACATGTGGT+GGG | - | chr2_2:58279442-58279461 | Msa0260590:intron | 55.0% | |
| ! | TGTTGCTTGGGGATGCACCA+TGG | - | chr2_2:58279880-58279899 | Msa0260590:CDS | 55.0% |
| GTTCCAACTGCACCCAAACC+CGG | + | chr2_2:58280474-58280493 | None:intergenic | 55.0% | |
| GTTTGGGTGCAGTTGGAACC+AGG | - | chr2_2:58280475-58280494 | Msa0260590:CDS | 55.0% | |
| TTGGGTGCAGTTGGAACCAG+GGG | - | chr2_2:58280477-58280496 | Msa0260590:CDS | 55.0% | |
| CAGGAGACTGAGCTTACCCT+TGG | - | chr2_2:58279157-58279176 | Msa0260590:three_prime_UTR | 55.0% | |
| ! | GAGCTTACCCTTGGTCTTCC+CGG | - | chr2_2:58279166-58279185 | Msa0260590:three_prime_UTR | 55.0% |
| TGCATGCAGGGAACATGTGG+TGG | - | chr2_2:58279441-58279460 | Msa0260590:intron | 55.0% | |
| GCATGCAGGGAACATGTGGT+GGG | - | chr2_2:58279442-58279461 | Msa0260590:intron | 55.0% | |
| ! | TGTTGCTTGGGGATGCACCA+TGG | - | chr2_2:58279880-58279899 | Msa0260590:CDS | 55.0% |
| GTTCCAACTGCACCCAAACC+CGG | + | chr2_2:58280474-58280493 | None:intergenic | 55.0% | |
| GTTTGGGTGCAGTTGGAACC+AGG | - | chr2_2:58280475-58280494 | Msa0260590:CDS | 55.0% | |
| TTGGGTGCAGTTGGAACCAG+GGG | - | chr2_2:58280477-58280496 | Msa0260590:CDS | 55.0% | |
| GGGTGCATGCAGGGAACATG+TGG | - | chr2_2:58279438-58279457 | Msa0260590:intron | 60.0% | |
| ! | GCAGGGAACATGTGGTGGGA+TGG | - | chr2_2:58279446-58279465 | Msa0260590:intron | 60.0% |
| ! | ACATGTGGTGGGATGGCCAC+CGG | - | chr2_2:58279453-58279472 | Msa0260590:intron | 60.0% |
| TTCCTACTTGCCCTCACCGG+TGG | + | chr2_2:58279472-58279491 | None:intergenic | 60.0% | |
| CTCACTGGAGGCCGTACATC+TGG | + | chr2_2:58280282-58280301 | None:intergenic | 60.0% | |
| GGGTGCATGCAGGGAACATG+TGG | - | chr2_2:58279438-58279457 | Msa0260590:intron | 60.0% | |
| ! | GCAGGGAACATGTGGTGGGA+TGG | - | chr2_2:58279446-58279465 | Msa0260590:intron | 60.0% |
| ! | ACATGTGGTGGGATGGCCAC+CGG | - | chr2_2:58279453-58279472 | Msa0260590:intron | 60.0% |
| TTCCTACTTGCCCTCACCGG+TGG | + | chr2_2:58279472-58279491 | None:intergenic | 60.0% | |
| CTCACTGGAGGCCGTACATC+TGG | + | chr2_2:58280282-58280301 | None:intergenic | 60.0% | |
| GGACCGGGTTTGGGTGCAGT+TGG | - | chr2_2:58280468-58280487 | Msa0260590:CDS | 65.0% | |
| GGTGCAGTTGGAACCAGGGG+TGG | - | chr2_2:58280480-58280499 | Msa0260590:CDS | 65.0% | |
| GGACCGGGTTTGGGTGCAGT+TGG | - | chr2_2:58280468-58280487 | Msa0260590:CDS | 65.0% | |
| GGTGCAGTTGGAACCAGGGG+TGG | - | chr2_2:58280480-58280499 | Msa0260590:CDS | 65.0% | |
| TGGTGGGATGGCCACCGGTG+AGG | - | chr2_2:58279458-58279477 | Msa0260590:intron | 70.0% | |
| GGTGGGATGGCCACCGGTGA+GGG | - | chr2_2:58279459-58279478 | Msa0260590:intron | 70.0% | |
| GGCCACCGGTGAGGGCAAGT+AGG | - | chr2_2:58279467-58279486 | Msa0260590:intron | 70.0% | |
| TGGTGGGATGGCCACCGGTG+AGG | - | chr2_2:58279458-58279477 | Msa0260590:intron | 70.0% | |
| GGTGGGATGGCCACCGGTGA+GGG | - | chr2_2:58279459-58279478 | Msa0260590:intron | 70.0% | |
| GGCCACCGGTGAGGGCAAGT+AGG | - | chr2_2:58279467-58279486 | Msa0260590:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 58279007 | 58280721 | 58279007 | ID=Msa0260590;Name=Msa0260590 |
| chr2_2 | mRNA | 58279007 | 58280721 | 58279007 | ID=Msa0260590-mRNA-1;Parent=Msa0260590;Name=Msa0260590-mRNA-1;_AED=0.07;_eAED=0.07;_QI=78|1|1|1|1|1|5|402|221 |
| chr2_2 | exon | 58279007 | 58279452 | 58279007 | ID=Msa0260590-mRNA-1:exon:17844;Parent=Msa0260590-mRNA-1 |
| chr2_2 | exon | 58279565 | 58279629 | 58279565 | ID=Msa0260590-mRNA-1:exon:17843;Parent=Msa0260590-mRNA-1 |
| chr2_2 | exon | 58279824 | 58279941 | 58279824 | ID=Msa0260590-mRNA-1:exon:17842;Parent=Msa0260590-mRNA-1 |
| chr2_2 | exon | 58280091 | 58280278 | 58280091 | ID=Msa0260590-mRNA-1:exon:17841;Parent=Msa0260590-mRNA-1 |
| chr2_2 | exon | 58280393 | 58280721 | 58280393 | ID=Msa0260590-mRNA-1:exon:17840;Parent=Msa0260590-mRNA-1 |
| chr2_2 | five_prime_UTR | 58280644 | 58280721 | 58280644 | ID=Msa0260590-mRNA-1:five_prime_utr;Parent=Msa0260590-mRNA-1 |
| chr2_2 | CDS | 58280393 | 58280643 | 58280393 | ID=Msa0260590-mRNA-1:cds;Parent=Msa0260590-mRNA-1 |
| chr2_2 | CDS | 58280091 | 58280278 | 58280091 | ID=Msa0260590-mRNA-1:cds;Parent=Msa0260590-mRNA-1 |
| chr2_2 | CDS | 58279824 | 58279941 | 58279824 | ID=Msa0260590-mRNA-1:cds;Parent=Msa0260590-mRNA-1 |
| chr2_2 | CDS | 58279565 | 58279629 | 58279565 | ID=Msa0260590-mRNA-1:cds;Parent=Msa0260590-mRNA-1 |
| chr2_2 | CDS | 58279409 | 58279452 | 58279409 | ID=Msa0260590-mRNA-1:cds;Parent=Msa0260590-mRNA-1 |
| chr2_2 | three_prime_UTR | 58279007 | 58279408 | 58279007 | ID=Msa0260590-mRNA-1:three_prime_utr;Parent=Msa0260590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
