AlfalfaGEDB | Msa0260590

M. sativa cultivar zhongmu-4 / Msa0260590

KEGG: K14484
GO: GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0140110 GO:1900055 GO:1900057 GO:1903506 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141
PFAM: PF02309.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0260590	AES68053.1	80.660	212	15	6	1	208	1	190	9.54e-100	298

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0260590	sp\|P93830\|IAA17_ARATH	45.116	215	87	8	24	210	9	220	3.38e-51	168

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0260590	G7IMD8	80.660	212	15	6	1	208	1	190	4.56e-100	298

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TFs/TRs:

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Gene ID	Type	Classification
Msa0260590	TR	AUX/IAA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0094160	Msa0260590	0.903127	4.778462e-79	-8.615850e-47
Msa0105340	Msa0260590	0.802432	5.626492e-49	-8.615850e-47
Msa0225780	Msa0260590	0.971573	2.236807e-133	-8.615850e-47
Msa0260590	Msa0260650	0.970818	3.376285e-132	-8.615850e-47
Msa0260590	Msa0284870	0.805141	1.540173e-49	-8.615850e-47
Msa0260590	Msa0654060	0.810025	1.415234e-50	-8.615850e-47
Msa0260590	Msa0743640	0.805798	1.121976e-49	-8.615850e-47
Msa0260590	Msa0863760	0.808182	3.511347e-50	-8.615850e-47
Msa0260590	Msa0887070	0.805338	1.400841e-49	-8.615850e-47
Msa0260590	Msa0903730	0.802694	4.968071e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0260590	MtrunA17_Chr2g0332141	91.667	120	10	0	102	221	4	123	2.58e-80	236
Msa0260590	MtrunA17_Chr1g0190711	42.793	222	83	7	24	202	17	237	1.85e-48	159
Msa0260590	MtrunA17_Chr6g0486121	39.224	232	91	9	17	202	11	238	2.94e-46	154
Msa0260590	MtrunA17_Chr1g0184791	42.793	222	79	11	23	202	14	229	1.38e-44	149
Msa0260590	MtrunA17_Chr1g0187921	43.056	216	81	8	24	202	10	220	2.54e-44	148
Msa0260590	MtrunA17_Chr7g0260641	41.850	227	79	9	24	202	13	234	1.08e-43	147
Msa0260590	MtrunA17_Chr8g0390281	45.122	164	63	4	63	202	117	277	5.02e-41	141
Msa0260590	MtrunA17_Chr1g0187961	43.617	188	71	7	24	202	13	174	1.39e-40	137
Msa0260590	MtrunA17_Chr1g0166011	40.741	189	83	6	27	202	6	178	1.04e-39	134
Msa0260590	MtrunA17_Chr5g0428141	43.787	169	69	6	73	219	183	347	7.25e-39	137

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0260590	AT1G04250.1	45.116	215	87	8	24	210	9	220	3.44e-52	168
Msa0260590	AT4G14550.1	44.651	215	78	8	24	202	3	212	2.78e-50	163
Msa0260590	AT4G14550.2	44.651	215	78	8	24	202	3	212	4.48e-50	163
Msa0260590	AT3G04730.1	42.986	221	80	7	24	202	4	220	2.69e-47	156
Msa0260590	AT3G23050.1	43.498	223	78	9	24	202	8	226	1.58e-45	152
Msa0260590	AT4G14550.3	42.424	198	73	8	24	185	3	195	2.98e-40	137
Msa0260590	AT1G04240.1	40.212	189	89	5	24	202	7	181	7.01e-39	133
Msa0260590	AT3G23030.1	41.304	184	84	7	19	202	7	166	1.80e-38	131
Msa0260590	AT4G29080.1	35.521	259	89	8	18	202	35	289	4.01e-38	134
Msa0260590	AT3G23030.2	41.304	184	84	7	19	202	94	253	1.04e-37	132

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Find 75 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACTCTAGCTATAAAA+TGG	0.286074	2_2:-58279259	Msa0260590:three_prime_UTR
AACCAGGGGTGGTCTTTATT+AGG	0.300336	2_2:-58279215	Msa0260590:three_prime_UTR
AAGGCTTATGATTAGCTCGG+AGG	0.705152	2_2:-58279580	Msa0260590:CDS
AATAGTATATAAAACCCTAA+TGG	0.484093	2_2:-58279088	Msa0260590:three_prime_UTR
ACAATGTCATCACAAATGAG+TGG	0.687436	2_2:-58280624	Msa0260590:CDS
ACATGTGGTGGGATGGCCAC+CGG	0.463192	2_2:-58280253	Msa0260590:CDS
ACGAAGATAAAGATGGTGAC+TGG	0.565436	2_2:-58279850	Msa0260590:CDS
ACTACTACCGGGAAGACCAA+GGG	0.663756	2_2:+58280533	None:intergenic
ACTCTAGCTATAAAATGGAC+CGG	0.484208	2_2:-58279254	Msa0260590:three_prime_UTR
AGAAGTACTAGAAGTTGAGG+TGG	0.639519	2_2:+58280449	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGTTCAAAGTTGTGTATATT+AGG	+	chr2_2:58279019-58279038	None:intergenic	30.0%
GTTCTTACTTTGATGTTGTT+GGG	+	chr2_2:58279324-58279343	None:intergenic	30.0%
ACTAGCTAGCTATATATGTA+CGG	+	chr2_2:58279346-58279365	None:intergenic	30.0%
GATGAATGAGAAGAAATTCA+TGG	-	chr2_2:58279797-58279816	Msa0260590:intron	30.0%
TTGAATCATGTAAGAGGATA+AGG	-	chr2_2:58280107-58280126	Msa0260590:CDS	30.0%
ATAATTATTCTTCTCACTGG+AGG	+	chr2_2:58280294-58280313	None:intergenic	30.0%
GCTATAATTATTCTTCTCAC+TGG	+	chr2_2:58280297-58280316	None:intergenic	30.0%
ATATAGCGATGATCATAATG+TGG	+	chr2_2:58280427-58280446	None:intergenic	30.0%
CAGGTATATATACATAAGAG+AGG	-	chr2_2:58280568-58280587	Msa0260590:CDS	30.0%
CGTTCAAAGTTGTGTATATT+AGG	+	chr2_2:58279019-58279038	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	58279007	58280721	58279007	ID=Msa0260590;Name=Msa0260590
chr2_2	mRNA	58279007	58280721	58279007	ID=Msa0260590-mRNA-1;Parent=Msa0260590;Name=Msa0260590-mRNA-1;_AED=0.07;_eAED=0.07;_QI=78\|1\|1\|1\|1\|1\|5\|402\|221
chr2_2	exon	58279007	58279452	58279007	ID=Msa0260590-mRNA-1:exon:17844;Parent=Msa0260590-mRNA-1
chr2_2	exon	58279565	58279629	58279565	ID=Msa0260590-mRNA-1:exon:17843;Parent=Msa0260590-mRNA-1
chr2_2	exon	58279824	58279941	58279824	ID=Msa0260590-mRNA-1:exon:17842;Parent=Msa0260590-mRNA-1
chr2_2	exon	58280091	58280278	58280091	ID=Msa0260590-mRNA-1:exon:17841;Parent=Msa0260590-mRNA-1
chr2_2	exon	58280393	58280721	58280393	ID=Msa0260590-mRNA-1:exon:17840;Parent=Msa0260590-mRNA-1
chr2_2	five_prime_UTR	58280644	58280721	58280644	ID=Msa0260590-mRNA-1:five_prime_utr;Parent=Msa0260590-mRNA-1
chr2_2	CDS	58280393	58280643	58280393	ID=Msa0260590-mRNA-1:cds;Parent=Msa0260590-mRNA-1
chr2_2	CDS	58280091	58280278	58280091	ID=Msa0260590-mRNA-1:cds;Parent=Msa0260590-mRNA-1
chr2_2	CDS	58279824	58279941	58279824	ID=Msa0260590-mRNA-1:cds;Parent=Msa0260590-mRNA-1
chr2_2	CDS	58279565	58279629	58279565	ID=Msa0260590-mRNA-1:cds;Parent=Msa0260590-mRNA-1
chr2_2	CDS	58279409	58279452	58279409	ID=Msa0260590-mRNA-1:cds;Parent=Msa0260590-mRNA-1
chr2_2	three_prime_UTR	58279007	58279408	58279007	ID=Msa0260590-mRNA-1:three_prime_utr;Parent=Msa0260590-mRNA-1

Gene Sequence

>Msa0260590

ATGTCATCACAAATGAGTGGTAGCAACTTCCACAGTTCCATTGAATGTACGAATAATAAGATGAATATTATTCAGGAGACTGAGCTTACCCTTGGTCTTCCCGGTAGTAGTACCAAAACTGCAGGCATAAAACGTAGCTTCTCTCACACTCACCTTGATCTTCATCTAATTGCCACCTCAACTTCTAGTACTTCTCATCATCATAATTCACTAAATTCTAATAATACCACTAAATTCCCAACAACATCAAAGGAACATGTGGTGGGATGGCCACCGGTGAGGGCAAGTAGGAAAAATATTGGTAGTAGTTGCAAGTACGTGAAAGTTGCGGTTGATGGAGCTCCATATCTAAGAAAAGTGGATCTTGAAGTTTATGAAAGTTATGATCATCTCTTCACTGCATTGAATACCATGTTTGCTACTAATTGCTTCAATATACGTAATGATTTGATGAATGAGAAGAAATTCATGGATTCTAGAAAAAATAGGAATGAATACATGGCTACATACGAAGATAAAGATGGTGACTGGATGTTGCTTGGGGATGCACCATGGAAGATGTTTGTTGAATCATGTAAGAGGATAAGGCTTATGATTAGCTCGGAGGACAATATTGATTTTGGTTCCAGATGTACGGCCTCCAGTGAGAAGAATAATTATAGCTAG

Protein sequence

>Msa0260590

MSSQMSGSNFHSSIECTNNKMNIIQETELTLGLPGSSTKTAGIKRSFSHTHLDLHLIATSTSSTSHHHNSLNSNNTTKFPTTSKEHVVGWPPVRASRKNIGSSCKYVKVAVDGAPYLRKVDLEVYESYDHLFTALNTMFATNCFNIRNDLMNEKKFMDSRKNRNEYMATYEDKDGDWMLLGDAPWKMFVESCKRIRLMISSEDNIDFGSRCTASSEKNNYS*