Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260750 | KEH38843.1 | 96.667 | 240 | 8 | 0 | 2 | 241 | 125 | 364 | 2.04e-166 | 477 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260750 | sp|Q6NQ81|PP304_ARATH | 35.357 | 280 | 169 | 1 | 10 | 289 | 121 | 388 | 2.68e-50 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260750 | A0A072VBQ6 | 96.667 | 240 | 8 | 0 | 2 | 241 | 125 | 364 | 9.74e-167 | 477 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0260750 | Msa0260760 | 0.844226 | 8.618154e-59 | -8.615850e-47 |
| Msa0260750 | Msa0269820 | 0.845694 | 3.460446e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260750 | MtrunA17_Chr2g0319471 | 86.022 | 279 | 27 | 1 | 2 | 280 | 125 | 391 | 2.29e-169 | 479 |
| Msa0260750 | MtrunA17_Chr2g0319471 | 92.593 | 54 | 4 | 0 | 242 | 295 | 470 | 523 | 6.36e-26 | 107 |
| Msa0260750 | MtrunA17_Chr4g0041921 | 56.223 | 233 | 102 | 0 | 10 | 242 | 138 | 370 | 3.48e-85 | 273 |
| Msa0260750 | MtrunA17_Chr4g0041891 | 49.524 | 210 | 103 | 1 | 10 | 219 | 112 | 318 | 5.66e-63 | 202 |
| Msa0260750 | MtrunA17_Chr7g0215611 | 39.373 | 287 | 151 | 6 | 7 | 288 | 78 | 346 | 7.32e-56 | 186 |
| Msa0260750 | MtrunA17_Chr7g0223561 | 46.471 | 170 | 82 | 6 | 88 | 253 | 13 | 177 | 4.50e-34 | 126 |
| Msa0260750 | MtrunA17_Chr7g0223591 | 40.654 | 214 | 117 | 7 | 63 | 271 | 91 | 299 | 3.47e-33 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260750 | AT4G04790.1 | 35.357 | 280 | 169 | 1 | 10 | 289 | 121 | 388 | 2.73e-51 | 181 |
| Msa0260750 | AT4G04790.3 | 35.357 | 280 | 169 | 1 | 10 | 289 | 117 | 384 | 2.80e-51 | 180 |
| Msa0260750 | AT4G21880.2 | 35.612 | 278 | 165 | 3 | 4 | 280 | 91 | 355 | 2.73e-49 | 175 |
| Msa0260750 | AT4G21880.1 | 35.612 | 278 | 165 | 3 | 4 | 280 | 135 | 399 | 4.36e-49 | 174 |
| Msa0260750 | AT4G04790.2 | 35.135 | 259 | 156 | 1 | 31 | 289 | 5 | 251 | 2.01e-46 | 166 |
Find 97 sgRNAs with CRISPR-Local
Find 341 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCGCAGAAAATTATTTAT+TGG | 0.183682 | 2_2:-58543397 | Msa0260750:intron |
| GGGCGATATGTTTGCTCTTC+TGG | 0.189121 | 2_2:+58544157 | None:intergenic |
| CTCTATAGCGAAGGTATTTC+AGG | 0.204333 | 2_2:-58543295 | Msa0260750:CDS |
| TGAACGGAAGGAGAATATTT+TGG | 0.245940 | 2_2:-58543361 | Msa0260750:CDS |
| GTTCCTTCATTAAATCAAAA+AGG | 0.268049 | 2_2:+58544191 | None:intergenic |
| CACTTGCTTTGAAGTCTAAA+AGG | 0.279870 | 2_2:+58543232 | None:intergenic |
| TACATATACCCCTCTTATTA+AGG | 0.287708 | 2_2:+58540225 | None:intergenic |
| AGAAGAATGAAGGTTGAATT+TGG | 0.290693 | 2_2:+58545632 | None:intergenic |
| GCATCAACTTTCTCGGTATC+AGG | 0.309961 | 2_2:+58544534 | None:intergenic |
| ACCCAGTCTTGCAGTTGAAT+TGG | 0.318926 | 2_2:+58544057 | None:intergenic |
| GACATTGCAATTGAAGAAAT+GGG | 0.333617 | 2_2:-58544226 | Msa0260750:CDS |
| AGACATTGCAATTGAAGAAA+TGG | 0.334762 | 2_2:-58544227 | Msa0260750:CDS |
| GATAGAATCAACATCAAGTT+TGG | 0.334842 | 2_2:+58545578 | None:intergenic |
| TCCCAATTCAACTGCAAGAC+TGG | 0.342568 | 2_2:-58544059 | Msa0260750:CDS |
| GATTTCCTTACCGATAAATC+TGG | 0.343525 | 2_2:+58542840 | None:intergenic |
| TTTGGAGGTGTTGGAAATCA+TGG | 0.355242 | 2_2:-58543343 | Msa0260750:CDS |
| CATGCAAGTTTGCCGATGAT+TGG | 0.365015 | 2_2:+58540366 | None:intergenic |
| AATTCATTATTAAGAGTAAG+AGG | 0.368961 | 2_2:+58539998 | None:intergenic |
| GGCATTGGGAAGACTACTAT+TGG | 0.381092 | 2_2:-58543274 | Msa0260750:CDS |
| CTTCATCGAAACTCTGATTC+AGG | 0.384389 | 2_2:-58545540 | Msa0260750:intron |
| TGAAGGATAAGCTTGGTCTT+TGG | 0.385335 | 2_2:-58540327 | Msa0260750:CDS |
| ATTTGCAGCATCAACTTTCT+CGG | 0.387502 | 2_2:+58544527 | None:intergenic |
| AGCATTATGTGAATTATCAT+TGG | 0.388644 | 2_2:+58540258 | None:intergenic |
| CCCAGTCTTGCAGTTGAATT+GGG | 0.389256 | 2_2:+58544058 | None:intergenic |
| AGTCAGCATTCCAGATTTAT+CGG | 0.389720 | 2_2:-58542850 | Msa0260750:intron |
| ATATTACTCTGAGGTACGTT+TGG | 0.413517 | 2_2:+58544471 | None:intergenic |
| AGCGAAGGTATTTCAGGCAT+TGG | 0.426028 | 2_2:-58543289 | Msa0260750:CDS |
| CCTTGAGTTGTTTGATAAAG+TGG | 0.426773 | 2_2:-58544326 | Msa0260750:CDS |
| TTTCAATTAAGCGGCGAAAA+CGG | 0.431589 | 2_2:+58544380 | None:intergenic |
| AAAAGGAGCTCCTCTGCAAC+AGG | 0.440881 | 2_2:+58543249 | None:intergenic |
| TCGTAGAAATTGTTGTTTGT+GGG | 0.445232 | 2_2:+58540144 | None:intergenic |
| CTGTTTCTGTAATGTAGAAA+TGG | 0.449806 | 2_2:+58545769 | None:intergenic |
| GCGAAGGTATTTCAGGCATT+GGG | 0.450482 | 2_2:-58543288 | Msa0260750:CDS |
| CATCATCTTAAACTATAAGA+TGG | 0.453630 | 2_2:+58540040 | None:intergenic |
| GAATGAGGCTCCTTAATAAG+AGG | 0.454545 | 2_2:-58540235 | Msa0260750:exon |
| GTGCTGGTGTACATACAAAT+TGG | 0.458212 | 2_2:-58540168 | Msa0260750:three_prime_UTR |
| ATCATCTTAAACTATAAGAT+GGG | 0.468445 | 2_2:+58540041 | None:intergenic |
| CAGAGTTTCGATGAAGGTTG+AGG | 0.470953 | 2_2:+58545547 | None:intergenic |
| ACTTTGCTACTACCAACAAT+AGG | 0.471995 | 2_2:-58540190 | Msa0260750:three_prime_UTR |
| GAAAGTTGTGCAAAGATACT+AGG | 0.472120 | 2_2:-58544361 | Msa0260750:CDS |
| ATCAACATCAAGTTTGGAAT+GGG | 0.475908 | 2_2:+58545584 | None:intergenic |
| TTCGTAGAAATTGTTGTTTG+TGG | 0.476336 | 2_2:+58540143 | None:intergenic |
| CTTTCTTTCAAGAGGGTGAA+GGG | 0.493951 | 2_2:+58540101 | None:intergenic |
| ATTCATTATTAAGAGTAAGA+GGG | 0.494703 | 2_2:+58539999 | None:intergenic |
| CCCAATTCAACTGCAAGACT+GGG | 0.500332 | 2_2:-58544058 | Msa0260750:CDS |
| AAATTTGCATGGGTAAAGCT+AGG | 0.502554 | 2_2:-58544264 | Msa0260750:CDS |
| AATCAACATCAAGTTTGGAA+TGG | 0.503680 | 2_2:+58545583 | None:intergenic |
| GCATTGTATCCTTTCACGCC+TGG | 0.508185 | 2_2:+58544295 | None:intergenic |
| TGCAAATAGTTCTAATAATG+TGG | 0.508819 | 2_2:+58545679 | None:intergenic |
| CCACTTTATCAAACAACTCA+AGG | 0.516462 | 2_2:+58544326 | None:intergenic |
| TTAGAAATGAAGGATAAGCT+TGG | 0.520450 | 2_2:-58540334 | Msa0260750:CDS |
| CTGAATCAGAGTTTCGATGA+AGG | 0.521340 | 2_2:+58545541 | None:intergenic |
| TGCAATTGAAGAAATGGGGA+AGG | 0.531771 | 2_2:-58544221 | Msa0260750:CDS |
| CTGTCATATTATCAAAGAAG+AGG | 0.532204 | 2_2:-58544083 | Msa0260750:CDS |
| GTGGGTGAATGTGTACGAAA+GGG | 0.534678 | 2_2:+58545654 | None:intergenic |
| TCAATTGTATACAAAAGAAG+TGG | 0.536661 | 2_2:+58544136 | None:intergenic |
| CAATCATCGGCAAACTTGCA+TGG | 0.537585 | 2_2:-58540365 | Msa0260750:CDS |
| TGCATTGGTAGAAATTTGCA+TGG | 0.541268 | 2_2:-58544275 | Msa0260750:CDS |
| AATTCACATAATGCTGAATG+AGG | 0.542846 | 2_2:-58540250 | Msa0260750:exon |
| TCTTTCTTTCAAGAGGGTGA+AGG | 0.544322 | 2_2:+58540100 | None:intergenic |
| ACACTTACCGTAGAAAATAG+AGG | 0.544534 | 2_2:+58545283 | None:intergenic |
| GTATACAATTGACATGGGTA+TGG | 0.544759 | 2_2:-58544125 | Msa0260750:CDS |
| CTTGAGTTGTTTGATAAAGT+GGG | 0.545096 | 2_2:-58544325 | Msa0260750:CDS |
| TTGCACAACTTTCAATTAAG+CGG | 0.546213 | 2_2:+58544371 | None:intergenic |
| TGGCTCTTTGTGAAAGTGAA+CGG | 0.547147 | 2_2:-58543377 | Msa0260750:CDS |
| AACATCAAGTTTGGAATGGG+TGG | 0.548478 | 2_2:+58545587 | None:intergenic |
| GGACGAAAACCAGGCGTGAA+AGG | 0.549368 | 2_2:-58544304 | Msa0260750:CDS |
| TGTACACCAGCACCTATTGT+TGG | 0.550756 | 2_2:+58540178 | None:intergenic |
| ATCTGTTGGCTCTATAGCGA+AGG | 0.552442 | 2_2:-58543304 | Msa0260750:CDS |
| GATAAAGTGGGACGAAAACC+AGG | 0.553212 | 2_2:-58544313 | Msa0260750:CDS |
| TGGGTGAATGTGTACGAAAG+GGG | 0.556977 | 2_2:+58545655 | None:intergenic |
| AATTTGCATGGGTAAAGCTA+GGG | 0.557559 | 2_2:-58544263 | Msa0260750:CDS |
| CTACTACCAACAATAGGTGC+TGG | 0.558631 | 2_2:-58540184 | Msa0260750:three_prime_UTR |
| TTATCATTGGCATTTGCAGA+AGG | 0.563671 | 2_2:+58540271 | None:intergenic |
| GATGAAGGTTGAGGCTTGCG+AGG | 0.573152 | 2_2:+58545556 | None:intergenic |
| GACTGTGTAACTAGCAATGA+AGG | 0.573585 | 2_2:+58542869 | None:intergenic |
| GGTGGGTGAATGTGTACGAA+AGG | 0.576735 | 2_2:+58545653 | None:intergenic |
| AATGAGGCTCCTTAATAAGA+GGG | 0.586870 | 2_2:-58540234 | Msa0260750:exon |
| CGTGAAAGGATACAATGCAT+TGG | 0.602128 | 2_2:-58544290 | Msa0260750:CDS |
| GAATGAAGGTTGAATTTGGT+GGG | 0.605142 | 2_2:+58545636 | None:intergenic |
| GGGTGAATGTGTACGAAAGG+GGG | 0.611422 | 2_2:+58545656 | None:intergenic |
| AGAGTAATATATCATTGCGA+AGG | 0.611702 | 2_2:-58544458 | Msa0260750:five_prime_UTR |
| AAGAGTCAGAAACCAATCAT+CGG | 0.615923 | 2_2:-58540378 | Msa0260750:CDS |
| TGCAGATGAATTGTCTGAAG+CGG | 0.616945 | 2_2:-58545321 | Msa0260750:intron |
| TCTTTGTGAAAGTGAACGGA+AGG | 0.619168 | 2_2:-58543373 | Msa0260750:CDS |
| AGAATGAAGGTTGAATTTGG+TGG | 0.631495 | 2_2:+58545635 | None:intergenic |
| TTTGATTTAATGAAGGAACA+AGG | 0.634361 | 2_2:-58544187 | Msa0260750:CDS |
| TCATCTTAAACTATAAGATG+GGG | 0.634826 | 2_2:+58540042 | None:intergenic |
| CAATTGTATACAAAAGAAGT+GGG | 0.639916 | 2_2:+58544137 | None:intergenic |
| ACTATTGGAACCTGTTGCAG+AGG | 0.644044 | 2_2:-58543259 | Msa0260750:CDS |
| CGCAATGATATATTACTCTG+AGG | 0.647892 | 2_2:+58544462 | None:intergenic |
| GCATTGGTAGAAATTTGCAT+GGG | 0.653918 | 2_2:-58544274 | Msa0260750:CDS |
| ACATTGCAATTGAAGAAATG+GGG | 0.655227 | 2_2:-58544225 | Msa0260750:CDS |
| GTTACTATGAAATGATGCTG+TGG | 0.658555 | 2_2:-58544036 | Msa0260750:CDS |
| TGCAAAGATACTAGGAACTG+AGG | 0.673859 | 2_2:-58544353 | Msa0260750:CDS |
| CACTTTATCAAACAACTCAA+GGG | 0.689617 | 2_2:+58544327 | None:intergenic |
| ATGAGGCTCCTTAATAAGAG+GGG | 0.691913 | 2_2:-58540233 | Msa0260750:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAAACTGAATTTTTTT+GGG | - | chr2_2:58540291-58540310 | Msa0260750:CDS | 10.0% |
| !! | ATTATAGTTAATTTATTCAT+AGG | + | chr2_2:58540849-58540868 | None:intergenic | 10.0% |
| !! | ATGAATTGTAATTAATATAG+TGG | + | chr2_2:58540259-58540278 | None:intergenic | 15.0% |
| !!! | GAATAAAAACTGAATTTTTT+TGG | - | chr2_2:58540290-58540309 | Msa0260750:CDS | 15.0% |
| !! | TTATATTGAAGAAAAAAATC+TGG | - | chr2_2:58540351-58540370 | Msa0260750:CDS | 15.0% |
| !! | TATATTGAAGAAAAAAATCT+GGG | - | chr2_2:58540352-58540371 | Msa0260750:CDS | 15.0% |
| !! | TAATAATGAAGAAAAAATTC+AGG | - | chr2_2:58541760-58541779 | Msa0260750:intron | 15.0% |
| !!! | TAATTTTCTTACAAATGTAA+TGG | + | chr2_2:58542079-58542098 | None:intergenic | 15.0% |
| !!! | TTTTTATTTTACACTAACAT+TGG | - | chr2_2:58544692-58544711 | Msa0260750:intron | 15.0% |
| !!! | TCAGTTTTTATTCATTTTTC+TGG | + | chr2_2:58540283-58540302 | None:intergenic | 20.0% |
| !! | ATAGTTAATTTATTCATAGG+AGG | + | chr2_2:58540846-58540865 | None:intergenic | 20.0% |
| !!! | GTTTGTCATAATTTATTTCT+TGG | - | chr2_2:58541875-58541894 | Msa0260750:intron | 20.0% |
| !!! | TTAACAGATATTTTGTTTCA+AGG | - | chr2_2:58542315-58542334 | Msa0260750:intron | 20.0% |
| !! | GCATTAATTGACATAAATTA+AGG | - | chr2_2:58542674-58542693 | Msa0260750:intron | 20.0% |
| !!! | GTTTTTAGAGTTTATTATGA+TGG | - | chr2_2:58542770-58542789 | Msa0260750:intron | 20.0% |
| !!! | TATCTTTCTTTTTATAGACA+AGG | + | chr2_2:58544267-58544286 | None:intergenic | 20.0% |
| !! | ATATACACAACTTACTTTAA+TGG | + | chr2_2:58544360-58544379 | None:intergenic | 20.0% |
| !! | TAAGTTGTGTATATTTAAGT+TGG | - | chr2_2:58544366-58544385 | Msa0260750:CDS | 20.0% |
| !!! | AAGTTGTGTATATTTAAGTT+GGG | - | chr2_2:58544367-58544386 | Msa0260750:CDS | 20.0% |
| !! | GAAGATAAAGTAAATTTATG+GGG | + | chr2_2:58544412-58544431 | None:intergenic | 20.0% |
| !! | GGAAGATAAAGTAAATTTAT+GGG | + | chr2_2:58544413-58544432 | None:intergenic | 20.0% |
| !! | AGGAAGATAAAGTAAATTTA+TGG | + | chr2_2:58544414-58544433 | None:intergenic | 20.0% |
| !! | TCATACAATTTGCATAAAAA+GGG | + | chr2_2:58544869-58544888 | None:intergenic | 20.0% |
| !! | TTCATACAATTTGCATAAAA+AGG | + | chr2_2:58544870-58544889 | None:intergenic | 20.0% |
| !! | ATCATCTTAAACTATAAGAT+GGG | + | chr2_2:58545727-58545746 | None:intergenic | 20.0% |
| !! | ATTCATTATTAAGAGTAAGA+GGG | + | chr2_2:58545769-58545788 | None:intergenic | 20.0% |
| !! | AATTCATTATTAAGAGTAAG+AGG | + | chr2_2:58545770-58545789 | None:intergenic | 20.0% |
| !!! | TGCAAATAGTTCTAATAATG+TGG | + | chr2_2:58540089-58540108 | None:intergenic | 25.0% |
| ! | ATGAAAAAGAAGAAGAATGA+AGG | + | chr2_2:58540146-58540165 | None:intergenic | 25.0% |
| !!! | ATTTTGACCAATTACGTTAA+TGG | - | chr2_2:58540322-58540341 | Msa0260750:CDS | 25.0% |
| ! | ACAATAACCATTAACGTAAT+TGG | + | chr2_2:58540332-58540351 | None:intergenic | 25.0% |
| ! | GTATTGTTCTTACTTATTTC+AGG | - | chr2_2:58541189-58541208 | Msa0260750:intron | 25.0% |
| !!! | TCACCTTTTTGATTTAATGA+AGG | - | chr2_2:58541571-58541590 | Msa0260750:intron | 25.0% |
| ! | GTTCCTTCATTAAATCAAAA+AGG | + | chr2_2:58541577-58541596 | None:intergenic | 25.0% |
| !! | TTTGATTTAATGAAGGAACA+AGG | - | chr2_2:58541578-58541597 | Msa0260750:intron | 25.0% |
| ! | CAATTGTATACAAAAGAAGT+GGG | + | chr2_2:58541631-58541650 | None:intergenic | 25.0% |
| ! | TCAATTGTATACAAAAGAAG+TGG | + | chr2_2:58541632-58541651 | None:intergenic | 25.0% |
| !! | TCTTTTGTATACAATTGACA+TGG | - | chr2_2:58541634-58541653 | Msa0260750:intron | 25.0% |
| !! | CTTTTGTATACAATTGACAT+GGG | - | chr2_2:58541635-58541654 | Msa0260750:intron | 25.0% |
| !!! | AATTTTGAAACATGCATGTT+TGG | + | chr2_2:58542221-58542240 | None:intergenic | 25.0% |
| ! | AAACATGCATGTTTCAAAAT+TGG | - | chr2_2:58542220-58542239 | Msa0260750:intron | 25.0% |
| !! | TAATTTTCTGCGACATAAAT+TGG | + | chr2_2:58542363-58542382 | None:intergenic | 25.0% |
| ! | TGTCGCAGAAAATTATTTAT+TGG | - | chr2_2:58542368-58542387 | Msa0260750:intron | 25.0% |
| ! | ATAAAAAAGCTTTCATCTGT+TGG | - | chr2_2:58542447-58542466 | Msa0260750:intron | 25.0% |
| !! | AATAAACTCTAAAAACACAC+TGG | + | chr2_2:58542766-58542785 | None:intergenic | 25.0% |
| ! | TAGAGTTTATTATGATGGTA+TGG | - | chr2_2:58542775-58542794 | Msa0260750:intron | 25.0% |
| ! | GGCAAAAAATTATAGAGAAA+GGG | + | chr2_2:58542815-58542834 | None:intergenic | 25.0% |
| ! | AGGCAAAAAATTATAGAGAA+AGG | + | chr2_2:58542816-58542835 | None:intergenic | 25.0% |
| ! | ATCTCACTAAAATATGTACA+AGG | + | chr2_2:58542836-58542855 | None:intergenic | 25.0% |
| !!! | GTAGAATATTTTAAGTAGCT+TGG | - | chr2_2:58543420-58543439 | Msa0260750:intron | 25.0% |
| ! | TTATAAGCTAGATATCGAAA+GGG | + | chr2_2:58543451-58543470 | None:intergenic | 25.0% |
| !! | TTTCGATATCTAGCTTATAA+GGG | - | chr2_2:58543451-58543470 | Msa0260750:intron | 25.0% |
| ! | TAGCACAAGATAATTCAAAA+TGG | - | chr2_2:58543817-58543836 | Msa0260750:intron | 25.0% |
| ! | GTTTCTACTCAATATAAATC+AGG | + | chr2_2:58543876-58543895 | None:intergenic | 25.0% |
| !! | TTTTATTCATGCATGTTCTT+TGG | - | chr2_2:58544002-58544021 | Msa0260750:CDS | 25.0% |
| ! | AAGAAAGATAATCTAGTACT+CGG | - | chr2_2:58544277-58544296 | Msa0260750:CDS | 25.0% |
| !! | TCAAGAATACATTTTTGACA+AGG | + | chr2_2:58544434-58544453 | None:intergenic | 25.0% |
| ! | AACTAAATGATACATCCTAT+TGG | - | chr2_2:58544605-58544624 | Msa0260750:intron | 25.0% |
| !!! | GCTTATGTTGATTTTGATTT+TGG | - | chr2_2:58544747-58544766 | Msa0260750:intron | 25.0% |
| ! | TAAGTTACAAATTGATGAAC+TGG | - | chr2_2:58544807-58544826 | Msa0260750:intron | 25.0% |
| ! | TATGAATGTTCTCTTTGATA+AGG | - | chr2_2:58544831-58544850 | Msa0260750:intron | 25.0% |
| !! | ATTTTTGTCTGCATGATTAT+AGG | - | chr2_2:58545349-58545368 | Msa0260750:intron | 25.0% |
| ! | AGCATTATGTGAATTATCAT+TGG | + | chr2_2:58545510-58545529 | None:intergenic | 25.0% |
| !! | CATTTTTCTTTCTTTCAAGA+GGG | + | chr2_2:58545674-58545693 | None:intergenic | 25.0% |
| !! | ACATTTTTCTTTCTTTCAAG+AGG | + | chr2_2:58545675-58545694 | None:intergenic | 25.0% |
| ! | TCATCTTAAACTATAAGATG+GGG | + | chr2_2:58545726-58545745 | None:intergenic | 25.0% |
| ! | CATCATCTTAAACTATAAGA+TGG | + | chr2_2:58545728-58545747 | None:intergenic | 25.0% |
| !! | CTGTTTCTGTAATGTAGAAA+TGG | + | chr2_2:58539999-58540018 | None:intergenic | 30.0% |
| AGAAGAATGAAGGTTGAATT+TGG | + | chr2_2:58540136-58540155 | None:intergenic | 30.0% | |
| ! | ATCAACATCAAGTTTGGAAT+GGG | + | chr2_2:58540184-58540203 | None:intergenic | 30.0% |
| AATCAACATCAAGTTTGGAA+TGG | + | chr2_2:58540185-58540204 | None:intergenic | 30.0% | |
| GATAGAATCAACATCAAGTT+TGG | + | chr2_2:58540190-58540209 | None:intergenic | 30.0% | |
| ! | CAGATTTCCTCTATTTTCTA+CGG | - | chr2_2:58540475-58540494 | Msa0260750:intron | 30.0% |
| !!! | TGTATGTGTCTGTTTTGATT+AGG | - | chr2_2:58540526-58540545 | Msa0260750:intron | 30.0% |
| !!! | TGTCTGTTTTGATTAGGATA+TGG | - | chr2_2:58540532-58540551 | Msa0260750:intron | 30.0% |
| ATTCATAGGAGGTGAAAAAA+GGG | + | chr2_2:58540835-58540854 | None:intergenic | 30.0% | |
| TATTCATAGGAGGTGAAAAA+AGG | + | chr2_2:58540836-58540855 | None:intergenic | 30.0% | |
| TTTATTGCTGACAACTCTAA+GGG | + | chr2_2:58540979-58540998 | None:intergenic | 30.0% | |
| ATTTATTGCTGACAACTCTA+AGG | + | chr2_2:58540980-58540999 | None:intergenic | 30.0% | |
| TACACTAATAGTAGTTCAAG+TGG | + | chr2_2:58541172-58541191 | None:intergenic | 30.0% | |
| TTGTTCTTACTTATTTCAGG+TGG | - | chr2_2:58541192-58541211 | Msa0260750:intron | 30.0% | |
| AGAGTAATATATCATTGCGA+AGG | - | chr2_2:58541307-58541326 | Msa0260750:intron | 30.0% | |
| TTGCACAACTTTCAATTAAG+CGG | + | chr2_2:58541397-58541416 | None:intergenic | 30.0% | |
| CACTTTATCAAACAACTCAA+GGG | + | chr2_2:58541441-58541460 | None:intergenic | 30.0% | |
| ! | CTTGAGTTGTTTGATAAAGT+GGG | - | chr2_2:58541440-58541459 | Msa0260750:intron | 30.0% |
| AGACATTGCAATTGAAGAAA+TGG | - | chr2_2:58541538-58541557 | Msa0260750:intron | 30.0% | |
| GACATTGCAATTGAAGAAAT+GGG | - | chr2_2:58541539-58541558 | Msa0260750:intron | 30.0% | |
| ACATTGCAATTGAAGAAATG+GGG | - | chr2_2:58541540-58541559 | Msa0260750:intron | 30.0% | |
| CTGTCATATTATCAAAGAAG+AGG | - | chr2_2:58541682-58541701 | Msa0260750:intron | 30.0% | |
| TATGCTCAAACTTCTATCAT+TGG | - | chr2_2:58541902-58541921 | Msa0260750:intron | 30.0% | |
| TGAACATCTATGTACAGAAA+AGG | + | chr2_2:58542292-58542311 | None:intergenic | 30.0% | |
| ! | TATCTTCTTGTTGTAACCTT+CGG | - | chr2_2:58542572-58542591 | Msa0260750:intron | 30.0% |
| ! | ATTATTCTTTTCCAAACCGA+AGG | + | chr2_2:58542591-58542610 | None:intergenic | 30.0% |
| AGGCTGCAAATATATTTCTT+TGG | - | chr2_2:58542694-58542713 | Msa0260750:intron | 30.0% | |
| AGTTTATTATGATGGTATGG+AGG | - | chr2_2:58542778-58542797 | Msa0260750:intron | 30.0% | |
| GTTTATTATGATGGTATGGA+GGG | - | chr2_2:58542779-58542798 | Msa0260750:intron | 30.0% | |
| TGCATAAAGTAAGTACTTCA+CGG | + | chr2_2:58542986-58543005 | None:intergenic | 30.0% | |
| GTAACACAAAAATGTGAAAC+TGG | + | chr2_2:58543035-58543054 | None:intergenic | 30.0% | |
| AGAATAGGTCCAAACTTTAA+AGG | + | chr2_2:58543184-58543203 | None:intergenic | 30.0% | |
| !!! | TTCGATTTTTTACACAGAAC+TGG | - | chr2_2:58543234-58543253 | Msa0260750:CDS | 30.0% |
| !!! | TCGATTTTTTACACAGAACT+GGG | - | chr2_2:58543235-58543254 | Msa0260750:CDS | 30.0% |
| ! | ATCGAGTAGTATGAGATTTT+CGG | - | chr2_2:58543398-58543417 | Msa0260750:intron | 30.0% |
| TATAAGCTAGATATCGAAAG+GGG | + | chr2_2:58543450-58543469 | None:intergenic | 30.0% | |
| CTTATAAGCTAGATATCGAA+AGG | + | chr2_2:58543452-58543471 | None:intergenic | 30.0% | |
| ! | CTTTCGATATCTAGCTTATA+AGG | - | chr2_2:58543450-58543469 | Msa0260750:intron | 30.0% |
| !! | TTTTAAGGGACAGTTTCATA+AGG | - | chr2_2:58543677-58543696 | Msa0260750:intron | 30.0% |
| TTTAAGGGACAGTTTCATAA+GGG | - | chr2_2:58543678-58543697 | Msa0260750:intron | 30.0% | |
| ! | GATAATTCAAAATGGCTTGT+TGG | - | chr2_2:58543825-58543844 | Msa0260750:intron | 30.0% |
| ACCTTTGACAAATTTGATTG+TGG | + | chr2_2:58543980-58543999 | None:intergenic | 30.0% | |
| TGTTTCATCTGATGTATTGT+TGG | - | chr2_2:58544075-58544094 | Msa0260750:CDS | 30.0% | |
| ! | TCTTTTTATAGACAAGGTTC+TGG | + | chr2_2:58544261-58544280 | None:intergenic | 30.0% |
| GAATCATCTTGTGTTGTATT+TGG | - | chr2_2:58544644-58544663 | Msa0260750:intron | 30.0% | |
| ! | GTATTTGGAATAAGCGTTTA+AGG | - | chr2_2:58544659-58544678 | Msa0260750:intron | 30.0% |
| ! | TTTTGTGATCCTACATCAAT+TGG | - | chr2_2:58544924-58544943 | Msa0260750:intron | 30.0% |
| AAGTATGTCCAGTCTTTATA+AGG | - | chr2_2:58544947-58544966 | Msa0260750:intron | 30.0% | |
| !!! | CTAACTTTTGGAATTGAGTT+AGG | - | chr2_2:58544994-58545013 | Msa0260750:intron | 30.0% |
| GCACAAAAACTACAGAATTT+GGG | + | chr2_2:58545026-58545045 | None:intergenic | 30.0% | |
| TGCACAAAAACTACAGAATT+TGG | + | chr2_2:58545027-58545046 | None:intergenic | 30.0% | |
| AACACGATCAAACTTATATG+TGG | - | chr2_2:58545054-58545073 | Msa0260750:intron | 30.0% | |
| !!! | GGAGTTGTTTTTAGAAATGA+AGG | - | chr2_2:58545421-58545440 | Msa0260750:intron | 30.0% |
| TTAGAAATGAAGGATAAGCT+TGG | - | chr2_2:58545431-58545450 | Msa0260750:intron | 30.0% | |
| ! | GAATCGTAACATTTTTGTGA+AGG | + | chr2_2:58545464-58545483 | None:intergenic | 30.0% |
| AATTCACATAATGCTGAATG+AGG | - | chr2_2:58545515-58545534 | Msa0260750:intron | 30.0% | |
| TACATATACCCCTCTTATTA+AGG | + | chr2_2:58545543-58545562 | None:intergenic | 30.0% | |
| !! | TCGTAGAAATTGTTGTTTGT+GGG | + | chr2_2:58545624-58545643 | None:intergenic | 30.0% |
| !! | TTCGTAGAAATTGTTGTTTG+TGG | + | chr2_2:58545625-58545644 | None:intergenic | 30.0% |
| GAATGAAGGTTGAATTTGGT+GGG | + | chr2_2:58540132-58540151 | None:intergenic | 35.0% | |
| AGAATGAAGGTTGAATTTGG+TGG | + | chr2_2:58540133-58540152 | None:intergenic | 35.0% | |
| ACACTTACCGTAGAAAATAG+AGG | + | chr2_2:58540485-58540504 | None:intergenic | 35.0% | |
| TTCATAGGAGGTGAAAAAAG+GGG | + | chr2_2:58540834-58540853 | None:intergenic | 35.0% | |
| !! | CTGTTTTCTTGTTGTCTGAA+AGG | - | chr2_2:58540876-58540895 | Msa0260750:intron | 35.0% |
| AATTGTTAGCGTCATGTTAG+TGG | - | chr2_2:58540921-58540940 | Msa0260750:intron | 35.0% | |
| TACATAGTGTTGTCACATAG+AGG | - | chr2_2:58541057-58541076 | Msa0260750:intron | 35.0% | |
| ATTTGCAGCATCAACTTTCT+CGG | + | chr2_2:58541241-58541260 | None:intergenic | 35.0% | |
| !! | ATATTACTCTGAGGTACGTT+TGG | + | chr2_2:58541297-58541316 | None:intergenic | 35.0% |
| CGCAATGATATATTACTCTG+AGG | + | chr2_2:58541306-58541325 | None:intergenic | 35.0% | |
| TTTCAATTAAGCGGCGAAAA+CGG | + | chr2_2:58541388-58541407 | None:intergenic | 35.0% | |
| GAAAGTTGTGCAAAGATACT+AGG | - | chr2_2:58541404-58541423 | Msa0260750:intron | 35.0% | |
| CCACTTTATCAAACAACTCA+AGG | + | chr2_2:58541442-58541461 | None:intergenic | 35.0% | |
| ! | CCTTGAGTTGTTTGATAAAG+TGG | - | chr2_2:58541439-58541458 | Msa0260750:intron | 35.0% |
| ! | TGCATTGGTAGAAATTTGCA+TGG | - | chr2_2:58541490-58541509 | Msa0260750:intron | 35.0% |
| ! | GCATTGGTAGAAATTTGCAT+GGG | - | chr2_2:58541491-58541510 | Msa0260750:intron | 35.0% |
| AAATTTGCATGGGTAAAGCT+AGG | - | chr2_2:58541501-58541520 | Msa0260750:intron | 35.0% | |
| AATTTGCATGGGTAAAGCTA+GGG | - | chr2_2:58541502-58541521 | Msa0260750:intron | 35.0% | |
| GTATACAATTGACATGGGTA+TGG | - | chr2_2:58541640-58541659 | Msa0260750:intron | 35.0% | |
| GTTACTATGAAATGATGCTG+TGG | - | chr2_2:58541729-58541748 | Msa0260750:intron | 35.0% | |
| !!! | ACACTTTTGATTTACGAGGT+GGG | - | chr2_2:58541819-58541838 | Msa0260750:intron | 35.0% |
| GAACTTGCGAGTATATGTTA+CGG | + | chr2_2:58541935-58541954 | None:intergenic | 35.0% | |
| ! | TATTTTGTCCGTGTTTTGTG+TGG | - | chr2_2:58542016-58542035 | Msa0260750:intron | 35.0% |
| ! | TGAACGGAAGGAGAATATTT+TGG | - | chr2_2:58542404-58542423 | Msa0260750:intron | 35.0% |
| !! | CACTTGCTTTGAAGTCTAAA+AGG | + | chr2_2:58542536-58542555 | None:intergenic | 35.0% |
| ! | CTTTTAGACTTCAAAGCAAG+TGG | - | chr2_2:58542534-58542553 | Msa0260750:intron | 35.0% |
| AGTCAGCATTCCAGATTTAT+CGG | - | chr2_2:58542915-58542934 | Msa0260750:intron | 35.0% | |
| GATTTCCTTACCGATAAATC+TGG | + | chr2_2:58542928-58542947 | None:intergenic | 35.0% | |
| GAAACTGGTGATATAGTTCT+AGG | + | chr2_2:58543020-58543039 | None:intergenic | 35.0% | |
| ATTACCAATAACATAAGCGC+AGG | - | chr2_2:58543157-58543176 | Msa0260750:intron | 35.0% | |
| TCAGGGTTTAATTCGAGAAT+AGG | + | chr2_2:58543199-58543218 | None:intergenic | 35.0% | |
| ACTGGGATGTATCCTAAAAA+TGG | - | chr2_2:58543252-58543271 | Msa0260750:CDS | 35.0% | |
| CTGGGATGTATCCTAAAAAT+GGG | - | chr2_2:58543253-58543272 | Msa0260750:CDS | 35.0% | |
| TGGGATGTATCCTAAAAATG+GGG | - | chr2_2:58543254-58543273 | Msa0260750:CDS | 35.0% | |
| !! | TTCTTGAAGTCCCCATTTTT+AGG | + | chr2_2:58543267-58543286 | None:intergenic | 35.0% |
| ! | AACTCGAGTTCTTTTTCTAG+AGG | - | chr2_2:58543290-58543309 | Msa0260750:CDS | 35.0% |
| TTGATGGGACTTAAGTACTA+TGG | - | chr2_2:58543359-58543378 | Msa0260750:CDS | 35.0% | |
| TGATGGGACTTAAGTACTAT+GGG | - | chr2_2:58543360-58543379 | Msa0260750:CDS | 35.0% | |
| AATCTCATACTACTCGATGT+AGG | + | chr2_2:58543396-58543415 | None:intergenic | 35.0% | |
| ! | ACACTCTATGATGCTTTGTT+CGG | + | chr2_2:58543518-58543537 | None:intergenic | 35.0% |
| ! | TGATAGGGACTTGGATATTT+TGG | - | chr2_2:58543572-58543591 | Msa0260750:intron | 35.0% |
| ! | GATAGGGACTTGGATATTTT+GGG | - | chr2_2:58543573-58543592 | Msa0260750:intron | 35.0% |
| ! | ATAGGGACTTGGATATTTTG+GGG | - | chr2_2:58543574-58543593 | Msa0260750:intron | 35.0% |
| ! | TGTTTGGTGGAAAGTTTAAG+TGG | - | chr2_2:58543627-58543646 | Msa0260750:intron | 35.0% |
| AAAGAACTGCGTCTATCAAA+AGG | + | chr2_2:58543725-58543744 | None:intergenic | 35.0% | |
| TAAGAAACCTAGAGCAGAAT+TGG | - | chr2_2:58543790-58543809 | Msa0260750:intron | 35.0% | |
| CATAGTTCCATGTGAACATT+TGG | - | chr2_2:58543954-58543973 | Msa0260750:CDS | 35.0% | |
| GCCACAATCAAATTTGTCAA+AGG | - | chr2_2:58543976-58543995 | Msa0260750:CDS | 35.0% | |
| ! | TGTATTGTTGGTGTTCTTGA+AGG | - | chr2_2:58544087-58544106 | Msa0260750:CDS | 35.0% |
| ! | GGGAGGCATAAATAAATTCA+AGG | - | chr2_2:58544114-58544133 | Msa0260750:CDS | 35.0% |
| ! | ACAGTGACTTTGTTATGGAA+GGG | + | chr2_2:58544482-58544501 | None:intergenic | 35.0% |
| ! | AACAGTGACTTTGTTATGGA+AGG | + | chr2_2:58544483-58544502 | None:intergenic | 35.0% |
| ACAGAACAGTGACTTTGTTA+TGG | + | chr2_2:58544487-58544506 | None:intergenic | 35.0% | |
| ! | TGATTTGTGTAAGCTTCTCA+AGG | - | chr2_2:58544783-58544802 | Msa0260750:intron | 35.0% |
| TTCAATGTTGACAAGAAGCA+TGG | - | chr2_2:58544897-58544916 | Msa0260750:intron | 35.0% | |
| GACATACTTCCAATTGATGT+AGG | + | chr2_2:58544936-58544955 | None:intergenic | 35.0% | |
| ATTCCAAAAGTTAGCTCAAG+AGG | + | chr2_2:58544988-58545007 | None:intergenic | 35.0% | |
| AAAACTACAGAATTTGGGAG+CGG | + | chr2_2:58545021-58545040 | None:intergenic | 35.0% | |
| TGATACAGTGTTGTCAATTG+TGG | + | chr2_2:58545256-58545275 | None:intergenic | 35.0% | |
| ACAAGTCAACTTGTATGCTA+TGG | + | chr2_2:58545318-58545337 | None:intergenic | 35.0% | |
| AAGAGTCAGAAACCAATCAT+CGG | - | chr2_2:58545387-58545406 | Msa0260750:intron | 35.0% | |
| TTATCATTGGCATTTGCAGA+AGG | + | chr2_2:58545497-58545516 | None:intergenic | 35.0% | |
| AATGAGGCTCCTTAATAAGA+GGG | - | chr2_2:58545531-58545550 | Msa0260750:intron | 35.0% | |
| ACTTTGCTACTACCAACAAT+AGG | - | chr2_2:58545575-58545594 | Msa0260750:five_prime_UTR | 35.0% | |
| ! | AACATCAAGTTTGGAATGGG+TGG | + | chr2_2:58540181-58540200 | None:intergenic | 40.0% |
| CTGAATCAGAGTTTCGATGA+AGG | + | chr2_2:58540227-58540246 | None:intergenic | 40.0% | |
| CTTCATCGAAACTCTGATTC+AGG | - | chr2_2:58540225-58540244 | Msa0260750:three_prime_UTR | 40.0% | |
| TGCAGATGAATTGTCTGAAG+CGG | - | chr2_2:58540444-58540463 | Msa0260750:intron | 40.0% | |
| AGAAAAGTAACCACGTGTGT+CGG | + | chr2_2:58540722-58540741 | None:intergenic | 40.0% | |
| TACTAGTGTCAGTGTTGTGT+CGG | - | chr2_2:58540750-58540769 | Msa0260750:intron | 40.0% | |
| TCATAGGAGGTGAAAAAAGG+GGG | + | chr2_2:58540833-58540852 | None:intergenic | 40.0% | |
| TTAGCGTCATGTTAGTGGTT+AGG | - | chr2_2:58540926-58540945 | Msa0260750:intron | 40.0% | |
| TAGCGTCATGTTAGTGGTTA+GGG | - | chr2_2:58540927-58540946 | Msa0260750:intron | 40.0% | |
| CCAATGTTGTCAATAGATCG+CGG | + | chr2_2:58541138-58541157 | None:intergenic | 40.0% | |
| TGCAAAGATACTAGGAACTG+AGG | - | chr2_2:58541412-58541431 | Msa0260750:intron | 40.0% | |
| CGTGAAAGGATACAATGCAT+TGG | - | chr2_2:58541475-58541494 | Msa0260750:intron | 40.0% | |
| TGCAATTGAAGAAATGGGGA+AGG | - | chr2_2:58541544-58541563 | Msa0260750:intron | 40.0% | |
| !!! | GACGACACTTTTGATTTACG+AGG | - | chr2_2:58541815-58541834 | Msa0260750:intron | 40.0% |
| !!! | GACACTTTTGATTTACGAGG+TGG | - | chr2_2:58541818-58541837 | Msa0260750:intron | 40.0% |
| CCAATTAGCCACACAAAACA+CGG | + | chr2_2:58542027-58542046 | None:intergenic | 40.0% | |
| TGGCTCTTTGTGAAAGTGAA+CGG | - | chr2_2:58542388-58542407 | Msa0260750:intron | 40.0% | |
| TCTTTGTGAAAGTGAACGGA+AGG | - | chr2_2:58542392-58542411 | Msa0260750:intron | 40.0% | |
| !! | ACGGAAGGAGAATATTTTGG+AGG | - | chr2_2:58542407-58542426 | Msa0260750:intron | 40.0% |
| !! | GGAGAATATTTTGGAGGTGT+TGG | - | chr2_2:58542413-58542432 | Msa0260750:intron | 40.0% |
| !! | TTTGGAGGTGTTGGAAATCA+TGG | - | chr2_2:58542422-58542441 | Msa0260750:intron | 40.0% |
| !! | CTCTATAGCGAAGGTATTTC+AGG | - | chr2_2:58542470-58542489 | Msa0260750:intron | 40.0% |
| ! | TCTTGTTGTAACCTTCGGTT+TGG | - | chr2_2:58542577-58542596 | Msa0260750:intron | 40.0% |
| TATGATGGTATGGAGGGATT+AGG | - | chr2_2:58542785-58542804 | Msa0260750:intron | 40.0% | |
| GACTGTGTAACTAGCAATGA+AGG | + | chr2_2:58542899-58542918 | None:intergenic | 40.0% | |
| GCATTCCAGATTTATCGGTA+AGG | - | chr2_2:58542920-58542939 | Msa0260750:intron | 40.0% | |
| CAGAAACTATATCATGCACG+AGG | + | chr2_2:58542950-58542969 | None:intergenic | 40.0% | |
| TCAAATGATGACTACCCACA+TGG | + | chr2_2:58543343-58543362 | None:intergenic | 40.0% | |
| TGTGGGTAGTCATCATTTGA+TGG | - | chr2_2:58543343-58543362 | Msa0260750:CDS | 40.0% | |
| GTGGGTAGTCATCATTTGAT+GGG | - | chr2_2:58543344-58543363 | Msa0260750:CDS | 40.0% | |
| GATGGGACTTAAGTACTATG+GGG | - | chr2_2:58543361-58543380 | Msa0260750:CDS | 40.0% | |
| ATGGGACTTAAGTACTATGG+GGG | - | chr2_2:58543362-58543381 | Msa0260750:CDS | 40.0% | |
| ATACTACTCGATGTAGGACT+TGG | + | chr2_2:58543390-58543409 | None:intergenic | 40.0% | |
| ! | CGATATCTAGCTTATAAGGG+AGG | - | chr2_2:58543454-58543473 | Msa0260750:intron | 40.0% |
| ! | ATCTAGCTTATAAGGGAGGT+TGG | - | chr2_2:58543458-58543477 | Msa0260750:intron | 40.0% |
| ! | TCTAGCTTATAAGGGAGGTT+GGG | - | chr2_2:58543459-58543478 | Msa0260750:intron | 40.0% |
| TTATAAGGGAGGTTGGGAAA+GGG | - | chr2_2:58543465-58543484 | Msa0260750:intron | 40.0% | |
| ! | ATCCTATGCTACTTGACATG+AGG | + | chr2_2:58543608-58543627 | None:intergenic | 40.0% |
| GTCAAGTAGCATAGGATGTT+TGG | - | chr2_2:58543611-58543630 | Msa0260750:intron | 40.0% | |
| AAGTAGCATAGGATGTTTGG+TGG | - | chr2_2:58543614-58543633 | Msa0260750:intron | 40.0% | |
| TTAAAAGCTAGCTATCGAGG+GGG | + | chr2_2:58543663-58543682 | None:intergenic | 40.0% | |
| CTTAAAAGCTAGCTATCGAG+GGG | + | chr2_2:58543664-58543683 | None:intergenic | 40.0% | |
| CCTTAAAAGCTAGCTATCGA+GGG | + | chr2_2:58543665-58543684 | None:intergenic | 40.0% | |
| !!! | CCTCGATAGCTAGCTTTTAA+GGG | - | chr2_2:58543663-58543682 | Msa0260750:intron | 40.0% |
| ATTGTGGCCAAATGTTCACA+TGG | + | chr2_2:58543964-58543983 | None:intergenic | 40.0% | |
| ! | TTGGTGTTCTTGAAGGTTGA+GGG | - | chr2_2:58544094-58544113 | Msa0260750:CDS | 40.0% |
| TTCTCATATGACGAGGAAGA+AGG | + | chr2_2:58544166-58544185 | None:intergenic | 40.0% | |
| AATGAGCTTCTCATATGACG+AGG | + | chr2_2:58544173-58544192 | None:intergenic | 40.0% | |
| !! | ACAAGGTTCTGGAAGTAACT+TGG | + | chr2_2:58544250-58544269 | None:intergenic | 40.0% |
| TGTTATGGAAGGGTTCTTTG+AGG | + | chr2_2:58544472-58544491 | None:intergenic | 40.0% | |
| ATCTGAATGCTATGCCTCAT+AGG | - | chr2_2:58544531-58544550 | Msa0260750:five_prime_UTR | 40.0% | |
| CAATTGATCGAACTCTCCAT+CGG | + | chr2_2:58544569-58544588 | None:intergenic | 40.0% | |
| ! | TCAATTGCTTCTGCTACTTG+AGG | - | chr2_2:58544582-58544601 | Msa0260750:intron | 40.0% |
| AAAAGTTAGCTCAAGAGGTG+AGG | + | chr2_2:58544983-58545002 | None:intergenic | 40.0% | |
| ! | TCACCTCTTGAGCTAACTTT+TGG | - | chr2_2:58544982-58545001 | Msa0260750:intron | 40.0% |
| AAACTACAGAATTTGGGAGC+GGG | + | chr2_2:58545020-58545039 | None:intergenic | 40.0% | |
| GTGTTGTCAATTGTGGAATG+CGG | + | chr2_2:58545249-58545268 | None:intergenic | 40.0% | |
| ! | TGAAGGATAAGCTTGGTCTT+TGG | - | chr2_2:58545438-58545457 | Msa0260750:intron | 40.0% |
| GAATGAGGCTCCTTAATAAG+AGG | - | chr2_2:58545530-58545549 | Msa0260750:intron | 40.0% | |
| ATGAGGCTCCTTAATAAGAG+GGG | - | chr2_2:58545532-58545551 | Msa0260750:intron | 40.0% | |
| ! | GTGCTGGTGTACATACAAAT+TGG | - | chr2_2:58545597-58545616 | Msa0260750:five_prime_UTR | 40.0% |
| CTTTCTTTCAAGAGGGTGAA+GGG | + | chr2_2:58545667-58545686 | None:intergenic | 40.0% | |
| TCTTTCTTTCAAGAGGGTGA+AGG | + | chr2_2:58545668-58545687 | None:intergenic | 40.0% | |
| TGGGTGAATGTGTACGAAAG+GGG | + | chr2_2:58540113-58540132 | None:intergenic | 45.0% | |
| GTGGGTGAATGTGTACGAAA+GGG | + | chr2_2:58540114-58540133 | None:intergenic | 45.0% | |
| CAGAGTTTCGATGAAGGTTG+AGG | + | chr2_2:58540221-58540240 | None:intergenic | 45.0% | |
| TAGAACTGACACTGCTACAG+AGG | + | chr2_2:58540598-58540617 | None:intergenic | 45.0% | |
| TGTAGCAGTGTCAGTTCTAC+TGG | - | chr2_2:58540599-58540618 | Msa0260750:intron | 45.0% | |
| AGTGGTTAGGGTTTGAACCT+TGG | - | chr2_2:58540939-58540958 | Msa0260750:intron | 45.0% | |
| ! | TTGCTGACAACTCTAAGGGT+TGG | + | chr2_2:58540975-58540994 | None:intergenic | 45.0% |
| CCGCGATCTATTGACAACAT+TGG | - | chr2_2:58541135-58541154 | Msa0260750:intron | 45.0% | |
| GCATCAACTTTCTCGGTATC+AGG | + | chr2_2:58541234-58541253 | None:intergenic | 45.0% | |
| GATAAAGTGGGACGAAAACC+AGG | - | chr2_2:58541452-58541471 | Msa0260750:intron | 45.0% | |
| TCCCAATTCAACTGCAAGAC+TGG | - | chr2_2:58541706-58541725 | Msa0260750:intron | 45.0% | |
| CCCAGTCTTGCAGTTGAATT+GGG | + | chr2_2:58541710-58541729 | None:intergenic | 45.0% | |
| CCCAATTCAACTGCAAGACT+GGG | - | chr2_2:58541707-58541726 | Msa0260750:intron | 45.0% | |
| ACCCAGTCTTGCAGTTGAAT+TGG | + | chr2_2:58541711-58541730 | None:intergenic | 45.0% | |
| ! | CCGTGTTTTGTGTGGCTAAT+TGG | - | chr2_2:58542024-58542043 | Msa0260750:intron | 45.0% |
| AAATTGGTGCATCCACTGTC+TGG | - | chr2_2:58542236-58542255 | Msa0260750:intron | 45.0% | |
| TATGTCTCCAAACCAGACAG+TGG | + | chr2_2:58542251-58542270 | None:intergenic | 45.0% | |
| !! | ATCTGTTGGCTCTATAGCGA+AGG | - | chr2_2:58542461-58542480 | Msa0260750:intron | 45.0% |
| !! | AGCGAAGGTATTTCAGGCAT+TGG | - | chr2_2:58542476-58542495 | Msa0260750:intron | 45.0% |
| !! | GCGAAGGTATTTCAGGCATT+GGG | - | chr2_2:58542477-58542496 | Msa0260750:intron | 45.0% |
| ! | GGCATTGGGAAGACTACTAT+TGG | - | chr2_2:58542491-58542510 | Msa0260750:intron | 45.0% |
| ACTATTGGAACCTGTTGCAG+AGG | - | chr2_2:58542506-58542525 | Msa0260750:intron | 45.0% | |
| AGGACCTGCGCTTATGTTAT+TGG | + | chr2_2:58543164-58543183 | None:intergenic | 45.0% | |
| !! | AGCGCAGGTCCTTTAAAGTT+TGG | - | chr2_2:58543172-58543191 | Msa0260750:intron | 45.0% |
| TTAAACCCTGAGTCTGCAGT+AGG | - | chr2_2:58543208-58543227 | Msa0260750:intron | 45.0% | |
| AATGTCCTACTGCAGACTCA+GGG | + | chr2_2:58543216-58543235 | None:intergenic | 45.0% | |
| ATGACTACCCACATGGTGTT+GGG | + | chr2_2:58543336-58543355 | None:intergenic | 45.0% | |
| CTTATAAGGGAGGTTGGGAA+AGG | - | chr2_2:58543464-58543483 | Msa0260750:intron | 45.0% | |
| GCATCATAGAGTGTAGCTTC+CGG | - | chr2_2:58543524-58543543 | Msa0260750:intron | 45.0% | |
| CATCATAGAGTGTAGCTTCC+GGG | - | chr2_2:58543525-58543544 | Msa0260750:intron | 45.0% | |
| ATCATAGAGTGTAGCTTCCG+GGG | - | chr2_2:58543526-58543545 | Msa0260750:intron | 45.0% | |
| ! | ATGCTACTTGACATGAGGCT+TGG | + | chr2_2:58543603-58543622 | None:intergenic | 45.0% |
| AGCCTCATGTCAAGTAGCAT+AGG | - | chr2_2:58543603-58543622 | Msa0260750:intron | 45.0% | |
| GGTGGAAAGTTTAAGTGGCT+TGG | - | chr2_2:58543632-58543651 | Msa0260750:intron | 45.0% | |
| !!! | CCCTCGATAGCTAGCTTTTA+AGG | - | chr2_2:58543662-58543681 | Msa0260750:intron | 45.0% |
| CCCTTAAAAGCTAGCTATCG+AGG | + | chr2_2:58543666-58543685 | None:intergenic | 45.0% | |
| GAAACCTAGAGCAGAATTGG+TGG | - | chr2_2:58543793-58543812 | Msa0260750:intron | 45.0% | |
| CTATCCACCAATTCTGCTCT+AGG | + | chr2_2:58543800-58543819 | None:intergenic | 45.0% | |
| CCAAACACACGATTAGTGAC+AGG | + | chr2_2:58544035-58544054 | None:intergenic | 45.0% | |
| CCTGTCACTAATCGTGTGTT+TGG | - | chr2_2:58544032-58544051 | Msa0260750:CDS | 45.0% | |
| ! | GTTGGTGTTCTTGAAGGTTG+AGG | - | chr2_2:58544093-58544112 | Msa0260750:CDS | 45.0% |
| ACGTAACTGTGCATTGCTCA+AGG | - | chr2_2:58544195-58544214 | Msa0260750:CDS | 45.0% | |
| GCAGCAAGCATCATTCCAAT+AGG | + | chr2_2:58544623-58544642 | None:intergenic | 45.0% | |
| CAGCTGCTGTGTGAAAACAT+TGG | + | chr2_2:58545089-58545108 | None:intergenic | 45.0% | |
| ! | CGCTAAAGCACTACTATAGC+TGG | + | chr2_2:58545191-58545210 | None:intergenic | 45.0% |
| CTATAGTAGTGCTTTAGCGC+TGG | - | chr2_2:58545192-58545211 | Msa0260750:intron | 45.0% | |
| CATGCAAGTTTGCCGATGAT+TGG | + | chr2_2:58545402-58545421 | None:intergenic | 45.0% | |
| CAATCATCGGCAAACTTGCA+TGG | - | chr2_2:58545400-58545419 | Msa0260750:intron | 45.0% | |
| CTACTACCAACAATAGGTGC+TGG | - | chr2_2:58545581-58545600 | Msa0260750:five_prime_UTR | 45.0% | |
| TGTACACCAGCACCTATTGT+TGG | + | chr2_2:58545590-58545609 | None:intergenic | 45.0% | |
| GGGTGAATGTGTACGAAAGG+GGG | + | chr2_2:58540112-58540131 | None:intergenic | 50.0% | |
| GGTGGGTGAATGTGTACGAA+AGG | + | chr2_2:58540115-58540134 | None:intergenic | 50.0% | |
| ! | GTCTGTGTCACTGTCTTGTC+CGG | - | chr2_2:58540694-58540713 | Msa0260750:intron | 50.0% |
| TGACAACATTGGACCTCGCT+TGG | - | chr2_2:58541146-58541165 | Msa0260750:intron | 50.0% | |
| GCATTGTATCCTTTCACGCC+TGG | + | chr2_2:58541473-58541492 | None:intergenic | 50.0% | |
| GGGCGATATGTTTGCTCTTC+TGG | + | chr2_2:58541611-58541630 | None:intergenic | 50.0% | |
| AAAAGGAGCTCCTCTGCAAC+AGG | + | chr2_2:58542519-58542538 | None:intergenic | 50.0% | |
| GAATGTCCTACTGCAGACTC+AGG | + | chr2_2:58543217-58543236 | None:intergenic | 50.0% | |
| CAACTCTCCCAACACCATGT+GGG | - | chr2_2:58543326-58543345 | Msa0260750:CDS | 50.0% | |
| GATGACTACCCACATGGTGT+TGG | + | chr2_2:58543337-58543356 | None:intergenic | 50.0% | |
| !! | AGGTTGGGAAAGGGTACCTA+TGG | - | chr2_2:58543474-58543493 | Msa0260750:intron | 50.0% |
| !! | TTGGGAAAGGGTACCTATGG+AGG | - | chr2_2:58543477-58543496 | Msa0260750:intron | 50.0% |
| !! | TGGGAAAGGGTACCTATGGA+GGG | - | chr2_2:58543478-58543497 | Msa0260750:intron | 50.0% |
| ! | GATGCTTTGTTCGGCCATTG+CGG | + | chr2_2:58543509-58543528 | None:intergenic | 50.0% |
| TCTCGGGCAGAGCTATGATA+GGG | - | chr2_2:58543557-58543576 | Msa0260750:intron | 50.0% | |
| GCAGAGCTATGATAGGGACT+TGG | - | chr2_2:58543563-58543582 | Msa0260750:intron | 50.0% | |
| GGGACAGTTTCATAAGGGCT+TGG | - | chr2_2:58543683-58543702 | Msa0260750:intron | 50.0% | |
| GTGTTCTTGAAGGTTGAGGG+AGG | - | chr2_2:58544097-58544116 | Msa0260750:CDS | 50.0% | |
| GGAACAAGTGTGCTCCTATG+AGG | + | chr2_2:58544548-58544567 | None:intergenic | 50.0% | |
| ! | TAGGAGCACACTTGTTCCGA+TGG | - | chr2_2:58544550-58544569 | Msa0260750:five_prime_UTR | 50.0% |
| GATGAAGGTTGAGGCTTGCG+AGG | + | chr2_2:58540212-58540231 | None:intergenic | 55.0% | |
| GGGTTGGAGAATCAGCTCCA+AGG | + | chr2_2:58540959-58540978 | None:intergenic | 55.0% | |
| GTAGTTCAAGTGGCCAAGCG+AGG | + | chr2_2:58541162-58541181 | None:intergenic | 55.0% | |
| GGACGAAAACCAGGCGTGAA+AGG | - | chr2_2:58541461-58541480 | Msa0260750:intron | 55.0% | |
| GGTGCATCCACTGTCTGGTT+TGG | - | chr2_2:58542241-58542260 | Msa0260750:intron | 55.0% | |
| ! | CCACATGGTGTTGGGAGAGT+TGG | + | chr2_2:58543328-58543347 | None:intergenic | 55.0% |
| CCAACTCTCCCAACACCATG+TGG | - | chr2_2:58543325-58543344 | Msa0260750:CDS | 55.0% | |
| !! | GGGAAAGGGTACCTATGGAG+GGG | - | chr2_2:58543479-58543498 | Msa0260750:intron | 55.0% |
| ATTGCGGTCAACCCCTCCAT+AGG | + | chr2_2:58543493-58543512 | None:intergenic | 55.0% | |
| TATGGAGGGGTTGACCGCAA+TGG | - | chr2_2:58543492-58543511 | Msa0260750:intron | 55.0% | |
| AGTGTAGCTTCCGGGGACAT+CGG | - | chr2_2:58543533-58543552 | Msa0260750:intron | 55.0% | |
| CTCTCGGGCAGAGCTATGAT+AGG | - | chr2_2:58543556-58543575 | Msa0260750:intron | 55.0% | |
| !! | GTGCTTTAGCGCTGGCGTAA+TGG | - | chr2_2:58545200-58545219 | Msa0260750:intron | 55.0% |
| ! | GTAACCACGTGTGTCGGCGC+CGG | + | chr2_2:58540716-58540735 | None:intergenic | 65.0% |
| !! | CTTCCGGGGACATCGGCTCT+CGG | - | chr2_2:58543540-58543559 | Msa0260750:intron | 65.0% |
| !! | TTCCGGGGACATCGGCTCTC+GGG | - | chr2_2:58543541-58543560 | Msa0260750:intron | 65.0% |
| !! | TTGTCCGGCGCCGACACACG+TGG | - | chr2_2:58540709-58540728 | Msa0260750:intron | 70.0% |
| TGCCCGAGAGCCGATGTCCC+CGG | + | chr2_2:58543546-58543565 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 58539971 | 58545816 | 58539971 | ID=Msa0260750;Name=Msa0260750 |
| chr2_2 | mRNA | 58539971 | 58545816 | 58539971 | ID=Msa0260750-mRNA-1;Parent=Msa0260750;Name=Msa0260750-mRNA-1;_AED=0.12;_eAED=0.12;_QI=472|0.8|1|1|1|0.83|6|281|295 |
| chr2_2 | exon | 58539971 | 58540416 | 58539971 | ID=Msa0260750-mRNA-1:exon:18001;Parent=Msa0260750-mRNA-1 |
| chr2_2 | exon | 58542851 | 58542915 | 58542851 | ID=Msa0260750-mRNA-1:exon:18000;Parent=Msa0260750-mRNA-1 |
| chr2_2 | exon | 58543232 | 58543411 | 58543232 | ID=Msa0260750-mRNA-1:exon:17999;Parent=Msa0260750-mRNA-1 |
| chr2_2 | exon | 58543951 | 58544576 | 58543951 | ID=Msa0260750-mRNA-1:exon:17998;Parent=Msa0260750-mRNA-1 |
| chr2_2 | exon | 58545291 | 58545338 | 58545291 | ID=Msa0260750-mRNA-1:exon:17997;Parent=Msa0260750-mRNA-1 |
| chr2_2 | exon | 58545541 | 58545816 | 58545541 | ID=Msa0260750-mRNA-1:exon:17996;Parent=Msa0260750-mRNA-1 |
| chr2_2 | five_prime_UTR | 58545541 | 58545816 | 58545541 | ID=Msa0260750-mRNA-1:five_prime_utr;Parent=Msa0260750-mRNA-1 |
| chr2_2 | five_prime_UTR | 58545291 | 58545338 | 58545291 | ID=Msa0260750-mRNA-1:five_prime_utr;Parent=Msa0260750-mRNA-1 |
| chr2_2 | five_prime_UTR | 58544429 | 58544576 | 58544429 | ID=Msa0260750-mRNA-1:five_prime_utr;Parent=Msa0260750-mRNA-1 |
| chr2_2 | CDS | 58543951 | 58544428 | 58543951 | ID=Msa0260750-mRNA-1:cds;Parent=Msa0260750-mRNA-1 |
| chr2_2 | CDS | 58543232 | 58543411 | 58543232 | ID=Msa0260750-mRNA-1:cds;Parent=Msa0260750-mRNA-1 |
| chr2_2 | CDS | 58542851 | 58542915 | 58542851 | ID=Msa0260750-mRNA-1:cds;Parent=Msa0260750-mRNA-1 |
| chr2_2 | CDS | 58540252 | 58540416 | 58540252 | ID=Msa0260750-mRNA-1:cds;Parent=Msa0260750-mRNA-1 |
| chr2_2 | three_prime_UTR | 58539971 | 58540251 | 58539971 | ID=Msa0260750-mRNA-1:three_prime_utr;Parent=Msa0260750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
