Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269820 | KEH38843.1 | 93.956 | 364 | 10 | 1 | 1 | 352 | 1 | 364 | 0.0 | 697 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269820 | sp|Q6NQ81|PP304_ARATH | 33.428 | 353 | 218 | 3 | 53 | 400 | 48 | 388 | 3.06e-55 | 198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269820 | A0A072VBQ6 | 93.956 | 364 | 10 | 1 | 1 | 352 | 1 | 364 | 0.0 | 697 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0269820 | 0.810177 | 1.311950e-50 | -8.615850e-47 |
| Msa0046100 | Msa0269820 | 0.804722 | 1.884486e-49 | -8.615850e-47 |
| Msa0046750 | Msa0269820 | 0.809559 | 1.782342e-50 | -8.615850e-47 |
| Msa0089380 | Msa0269820 | 0.805084 | 1.583251e-49 | -8.615850e-47 |
| Msa0090590 | Msa0269820 | 0.803523 | 3.347025e-49 | -8.615850e-47 |
| Msa0101810 | Msa0269820 | -0.809007 | 2.341201e-50 | -8.615850e-47 |
| Msa0105420 | Msa0269820 | 0.811444 | 6.979235e-51 | -8.615850e-47 |
| Msa0157290 | Msa0269820 | 0.810568 | 1.080716e-50 | -8.615850e-47 |
| Msa0195770 | Msa0269820 | 0.810565 | 1.081849e-50 | -8.615850e-47 |
| Msa0257430 | Msa0269820 | 0.854901 | 9.036366e-62 | -8.615850e-47 |
| Msa0260750 | Msa0269820 | 0.845694 | 3.460446e-59 | -8.615850e-47 |
| Msa0260760 | Msa0269820 | 0.971632 | 1.801578e-133 | -8.615850e-47 |
| Msa0269820 | Msa0356890 | -0.802067 | 6.689448e-49 | -8.615850e-47 |
| Msa0269820 | Msa0366240 | 0.801275 | 9.722967e-49 | -8.615850e-47 |
| Msa0269820 | Msa0419820 | 0.807546 | 4.794646e-50 | -8.615850e-47 |
| Msa0269820 | Msa0420840 | 0.815634 | 8.359873e-52 | -8.615850e-47 |
| Msa0269820 | Msa0432770 | 0.812039 | 5.180417e-51 | -8.615850e-47 |
| Msa0269820 | Msa0466390 | 0.804162 | 2.466280e-49 | -8.615850e-47 |
| Msa0269820 | Msa0480000 | 0.800332 | 1.514773e-48 | -8.615850e-47 |
| Msa0269820 | Msa0503580 | 0.804966 | 1.676147e-49 | -8.615850e-47 |
| Msa0269820 | Msa0503590 | 0.800137 | 1.659799e-48 | -8.615850e-47 |
| Msa0269820 | Msa0574890 | 0.815065 | 1.118956e-51 | -8.615850e-47 |
| Msa0269820 | Msa0621590 | 0.811699 | 6.142926e-51 | -8.615850e-47 |
| Msa0269820 | Msa0623080 | 0.814588 | 1.426983e-51 | -8.615850e-47 |
| Msa0269820 | Msa0647130 | 0.804705 | 1.900364e-49 | -8.615850e-47 |
| Msa0269820 | Msa0677400 | 0.803306 | 3.711971e-49 | -8.615850e-47 |
| Msa0269820 | Msa0760380 | 0.802303 | 5.980906e-49 | -8.615850e-47 |
| Msa0269820 | Msa0880140 | 0.810081 | 1.376451e-50 | -8.615850e-47 |
| Msa0269820 | Msa1312560 | 0.807316 | 5.364550e-50 | -8.615850e-47 |
| Msa0269820 | Msa1340650 | 0.804963 | 1.677998e-49 | -8.615850e-47 |
| Msa0269820 | Msa1346370 | 0.808303 | 3.309114e-50 | -8.615850e-47 |
| Msa0269820 | Msa1371430 | 0.807191 | 5.702897e-50 | -8.615850e-47 |
| Msa0269820 | Msa1415640 | 0.805668 | 1.194488e-49 | -8.615850e-47 |
| Msa0269820 | Msa1461300 | 0.820126 | 8.088020e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269820 | MtrunA17_Chr2g0319471 | 86.849 | 403 | 29 | 2 | 1 | 391 | 1 | 391 | 0.0 | 668 |
| Msa0269820 | MtrunA17_Chr2g0319471 | 92.593 | 54 | 4 | 0 | 353 | 406 | 470 | 523 | 5.64e-25 | 106 |
| Msa0269820 | MtrunA17_Chr4g0041921 | 44.444 | 378 | 190 | 5 | 6 | 364 | 5 | 381 | 6.50e-93 | 298 |
| Msa0269820 | MtrunA17_Chr4g0041891 | 40.419 | 334 | 166 | 9 | 8 | 330 | 7 | 318 | 5.68e-64 | 208 |
| Msa0269820 | MtrunA17_Chr7g0215611 | 38.141 | 312 | 165 | 7 | 98 | 399 | 53 | 346 | 3.91e-56 | 190 |
| Msa0269820 | MtrunA17_Chr7g0223561 | 46.471 | 170 | 82 | 6 | 199 | 364 | 13 | 177 | 3.71e-33 | 127 |
| Msa0269820 | MtrunA17_Chr7g0223591 | 41.232 | 211 | 114 | 7 | 177 | 382 | 94 | 299 | 2.13e-32 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269820 | AT4G04790.3 | 33.524 | 349 | 219 | 2 | 53 | 400 | 48 | 384 | 1.02e-56 | 199 |
| Msa0269820 | AT4G04790.1 | 33.428 | 353 | 218 | 3 | 53 | 400 | 48 | 388 | 3.11e-56 | 198 |
| Msa0269820 | AT4G21880.2 | 33.882 | 304 | 187 | 3 | 98 | 400 | 74 | 364 | 1.06e-48 | 177 |
| Msa0269820 | AT4G21880.1 | 34.576 | 295 | 179 | 3 | 98 | 391 | 118 | 399 | 1.35e-48 | 177 |
| Msa0269820 | AT4G04790.2 | 35.135 | 259 | 156 | 1 | 142 | 400 | 5 | 251 | 4.90e-45 | 166 |
Find 95 sgRNAs with CRISPR-Local
Find 343 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCGCAGAAAATTATTTAT+TGG | 0.183682 | 2_3:+874334 | Msa0269820:intron |
| GGGCGATATGTTTGCTCTTC+TGG | 0.189121 | 2_3:-873573 | None:intergenic |
| CTCTATAGCGAAGGTATTTC+AGG | 0.204333 | 2_3:+874436 | Msa0269820:CDS |
| TGAACGGAAGGAGAATATTT+TGG | 0.245940 | 2_3:+874370 | Msa0269820:CDS |
| GTTCCTTCATTAAATCAAAA+AGG | 0.268049 | 2_3:-873539 | None:intergenic |
| CACTTGCTTTGAAGTCTAAA+AGG | 0.279870 | 2_3:-874499 | None:intergenic |
| TACATATACCCCTCTTATTA+AGG | 0.287708 | 2_3:-877510 | None:intergenic |
| AGAAGAATGAAGGTTGAATT+TGG | 0.290693 | 2_3:-872099 | None:intergenic |
| ACCCAGTCTTGCAGTTGAAT+TGG | 0.318926 | 2_3:-873673 | None:intergenic |
| GACATTGCAATTGAAGAAAT+GGG | 0.333617 | 2_3:+873504 | Msa0269820:CDS |
| AGACATTGCAATTGAAGAAA+TGG | 0.334762 | 2_3:+873503 | Msa0269820:CDS |
| GATAGAATCAACATCAAGTT+TGG | 0.334842 | 2_3:-872153 | None:intergenic |
| TCCCAATTCAACTGCAAGAC+TGG | 0.342568 | 2_3:+873671 | Msa0269820:CDS |
| GATTTCCTTACCGATAAATC+TGG | 0.343525 | 2_3:-874891 | None:intergenic |
| TTTGGAGGTGTTGGAAATCA+TGG | 0.355242 | 2_3:+874388 | Msa0269820:CDS |
| CATGCAAGTTTGCCGATGAT+TGG | 0.365015 | 2_3:-877369 | None:intergenic |
| AATTCATTATTAAGAGTAAG+AGG | 0.368961 | 2_3:-877737 | None:intergenic |
| GGCATTGGGAAGACTACTAT+TGG | 0.381092 | 2_3:+874457 | Msa0269820:CDS |
| CTTCATCGAAACTCTGATTC+AGG | 0.384389 | 2_3:+872191 | Msa0269820:CDS |
| TGAAGGATAAGCTTGGTCTT+TGG | 0.385335 | 2_3:+877408 | Msa0269820:CDS |
| AGCATTATGTGAATTATCAT+TGG | 0.388644 | 2_3:-877477 | None:intergenic |
| CCCAGTCTTGCAGTTGAATT+GGG | 0.389256 | 2_3:-873672 | None:intergenic |
| AGTCAGCATTCCAGATTTAT+CGG | 0.389720 | 2_3:+874881 | Msa0269820:CDS |
| ATATTACTCTGAGGTACGTT+TGG | 0.413517 | 2_3:-873258 | None:intergenic |
| AGCGAAGGTATTTCAGGCAT+TGG | 0.426028 | 2_3:+874442 | Msa0269820:CDS |
| CCTTGAGTTGTTTGATAAAG+TGG | 0.426773 | 2_3:+873404 | Msa0269820:CDS |
| TTTCAATTAAGCGGCGAAAA+CGG | 0.431589 | 2_3:-873350 | None:intergenic |
| AAAAGGAGCTCCTCTGCAAC+AGG | 0.440881 | 2_3:-874482 | None:intergenic |
| TCGTAGAAATTGTTGTTTGT+GGG | 0.445232 | 2_3:-877591 | None:intergenic |
| CTGTTTCTGTAATGTAGAAA+TGG | 0.449338 | 2_3:-871964 | None:intergenic |
| GCGAAGGTATTTCAGGCATT+GGG | 0.450482 | 2_3:+874443 | Msa0269820:CDS |
| CATCATCTTAAACTATAAGA+TGG | 0.453630 | 2_3:-877695 | None:intergenic |
| GAATGAGGCTCCTTAATAAG+AGG | 0.454545 | 2_3:+877500 | Msa0269820:exon |
| GTGCTGGTGTACATACAAAT+TGG | 0.458212 | 2_3:+877567 | Msa0269820:three_prime_UTR |
| ATCATCTTAAACTATAAGAT+GGG | 0.468445 | 2_3:-877694 | None:intergenic |
| CAGAGTTTCGATGAAGGTTG+AGG | 0.470953 | 2_3:-872184 | None:intergenic |
| ACTTTGCTACTACCAACAAT+AGG | 0.471995 | 2_3:+877545 | Msa0269820:three_prime_UTR |
| GAAAGTTGTGCAAAGATACT+AGG | 0.472120 | 2_3:+873369 | Msa0269820:CDS |
| ATCAACATCAAGTTTGGAAT+GGG | 0.475908 | 2_3:-872147 | None:intergenic |
| TTCGTAGAAATTGTTGTTTG+TGG | 0.476336 | 2_3:-877592 | None:intergenic |
| CTTTCTTTCAAGAGGGTGAA+GGG | 0.493951 | 2_3:-877634 | None:intergenic |
| ATTCATTATTAAGAGTAAGA+GGG | 0.494703 | 2_3:-877736 | None:intergenic |
| CCCAATTCAACTGCAAGACT+GGG | 0.500332 | 2_3:+873672 | Msa0269820:CDS |
| AAATTTGCATGGGTAAAGCT+AGG | 0.502554 | 2_3:+873466 | Msa0269820:CDS |
| AATCAACATCAAGTTTGGAA+TGG | 0.503680 | 2_3:-872148 | None:intergenic |
| GCATTGTATCCTTTCACGCC+TGG | 0.508185 | 2_3:-873435 | None:intergenic |
| TGCAAATAGTTCTAATAATG+TGG | 0.508819 | 2_3:-872052 | None:intergenic |
| CCACTTTATCAAACAACTCA+AGG | 0.516462 | 2_3:-873404 | None:intergenic |
| TTAGAAATGAAGGATAAGCT+TGG | 0.520450 | 2_3:+877401 | Msa0269820:CDS |
| CTGAATCAGAGTTTCGATGA+AGG | 0.521340 | 2_3:-872190 | None:intergenic |
| TGCAATTGAAGAAATGGGGA+AGG | 0.531771 | 2_3:+873509 | Msa0269820:CDS |
| CTGTCATATTATCAAAGAAG+AGG | 0.532204 | 2_3:+873647 | Msa0269820:CDS |
| GTGGGTGAATGTGTACGAAA+GGG | 0.534678 | 2_3:-872077 | None:intergenic |
| TCAATTGTATACAAAAGAAG+TGG | 0.536661 | 2_3:-873594 | None:intergenic |
| CAATCATCGGCAAACTTGCA+TGG | 0.537585 | 2_3:+877370 | Msa0269820:CDS |
| TGCATTGGTAGAAATTTGCA+TGG | 0.541268 | 2_3:+873455 | Msa0269820:CDS |
| AATTCACATAATGCTGAATG+AGG | 0.542846 | 2_3:+877485 | Msa0269820:CDS |
| TCTTTCTTTCAAGAGGGTGA+AGG | 0.544322 | 2_3:-877635 | None:intergenic |
| ACACTTACCGTAGAAAATAG+AGG | 0.544534 | 2_3:-872447 | None:intergenic |
| GTATACAATTGACATGGGTA+TGG | 0.544759 | 2_3:+873605 | Msa0269820:CDS |
| CTTGAGTTGTTTGATAAAGT+GGG | 0.545096 | 2_3:+873405 | Msa0269820:CDS |
| TTGCACAACTTTCAATTAAG+CGG | 0.546213 | 2_3:-873359 | None:intergenic |
| TGGCTCTTTGTGAAAGTGAA+CGG | 0.547147 | 2_3:+874354 | Msa0269820:CDS |
| AACATCAAGTTTGGAATGGG+TGG | 0.548478 | 2_3:-872144 | None:intergenic |
| GGACGAAAACCAGGCGTGAA+AGG | 0.549368 | 2_3:+873426 | Msa0269820:CDS |
| TGTACACCAGCACCTATTGT+TGG | 0.550756 | 2_3:-877557 | None:intergenic |
| ATCTGTTGGCTCTATAGCGA+AGG | 0.552442 | 2_3:+874427 | Msa0269820:CDS |
| GATAAAGTGGGACGAAAACC+AGG | 0.553212 | 2_3:+873417 | Msa0269820:CDS |
| TGGGTGAATGTGTACGAAAG+GGG | 0.556977 | 2_3:-872076 | None:intergenic |
| AATTTGCATGGGTAAAGCTA+GGG | 0.557559 | 2_3:+873467 | Msa0269820:CDS |
| CTACTACCAACAATAGGTGC+TGG | 0.558631 | 2_3:+877551 | Msa0269820:three_prime_UTR |
| TTATCATTGGCATTTGCAGA+AGG | 0.563671 | 2_3:-877464 | None:intergenic |
| GATGAAGGTTGAGGCTTGCG+AGG | 0.573152 | 2_3:-872175 | None:intergenic |
| GACTGTGTAACTAGCAATGA+AGG | 0.573585 | 2_3:-874862 | None:intergenic |
| GGTGGGTGAATGTGTACGAA+AGG | 0.576735 | 2_3:-872078 | None:intergenic |
| AATGAGGCTCCTTAATAAGA+GGG | 0.586870 | 2_3:+877501 | Msa0269820:exon |
| CGTGAAAGGATACAATGCAT+TGG | 0.602128 | 2_3:+873440 | Msa0269820:CDS |
| GAATGAAGGTTGAATTTGGT+GGG | 0.605142 | 2_3:-872095 | None:intergenic |
| GGGTGAATGTGTACGAAAGG+GGG | 0.611422 | 2_3:-872075 | None:intergenic |
| AGAGTAATATATCATTGCGA+AGG | 0.611702 | 2_3:+873271 | Msa0269820:CDS |
| AAGAGTCAGAAACCAATCAT+CGG | 0.615923 | 2_3:+877357 | Msa0269820:CDS |
| TGCAGATGAATTGTCTGAAG+CGG | 0.616945 | 2_3:+872409 | Msa0269820:intron |
| TCTTTGTGAAAGTGAACGGA+AGG | 0.619168 | 2_3:+874358 | Msa0269820:CDS |
| AGAATGAAGGTTGAATTTGG+TGG | 0.631495 | 2_3:-872096 | None:intergenic |
| TTTGATTTAATGAAGGAACA+AGG | 0.634361 | 2_3:+873543 | Msa0269820:CDS |
| TCATCTTAAACTATAAGATG+GGG | 0.634826 | 2_3:-877693 | None:intergenic |
| CAATTGTATACAAAAGAAGT+GGG | 0.639916 | 2_3:-873593 | None:intergenic |
| ACTATTGGAACCTGTTGCAG+AGG | 0.644044 | 2_3:+874472 | Msa0269820:CDS |
| CGCAATGATATATTACTCTG+AGG | 0.647892 | 2_3:-873267 | None:intergenic |
| GCATTGGTAGAAATTTGCAT+GGG | 0.653918 | 2_3:+873456 | Msa0269820:CDS |
| ACATTGCAATTGAAGAAATG+GGG | 0.655227 | 2_3:+873505 | Msa0269820:CDS |
| GTTACTATGAAATGATGCTG+TGG | 0.658555 | 2_3:+873694 | Msa0269820:CDS |
| TGCAAAGATACTAGGAACTG+AGG | 0.673859 | 2_3:+873377 | Msa0269820:CDS |
| CACTTTATCAAACAACTCAA+GGG | 0.689617 | 2_3:-873403 | None:intergenic |
| ATGAGGCTCCTTAATAAGAG+GGG | 0.691913 | 2_3:+877502 | Msa0269820:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAAACTGAATTTTTTT+GGG | + | chr2_3:872256-872275 | Msa0269820:intron | 10.0% |
| !! | ATTATAGTTAATTTATTCAT+AGG | - | chr2_3:872813-872832 | None:intergenic | 10.0% |
| !! | ATGAATTGTAATTAATATAG+TGG | - | chr2_3:872225-872244 | None:intergenic | 15.0% |
| !!! | GAATAAAAACTGAATTTTTT+TGG | + | chr2_3:872255-872274 | Msa0269820:intron | 15.0% |
| !! | TATATTGAAGAAAAAAAATC+TGG | + | chr2_3:872316-872335 | Msa0269820:intron | 15.0% |
| !! | ATATTGAAGAAAAAAAATCT+GGG | + | chr2_3:872317-872336 | Msa0269820:intron | 15.0% |
| !! | TAATAATGAAGAAAAAATTC+AGG | + | chr2_3:873725-873744 | Msa0269820:CDS | 15.0% |
| !!! | TAATTTTCTTACAAATGTAA+TGG | - | chr2_3:874045-874064 | None:intergenic | 15.0% |
| !!! | TTTTTATTTTACACTAACAT+TGG | + | chr2_3:876662-876681 | Msa0269820:intron | 15.0% |
| !!! | TTCAGTTTTTATTCATTTTC+TGG | - | chr2_3:872249-872268 | None:intergenic | 20.0% |
| !! | ATAGTTAATTTATTCATAGG+AGG | - | chr2_3:872810-872829 | None:intergenic | 20.0% |
| !!! | GTTTGTCATAATTTATTTCT+TGG | + | chr2_3:873840-873859 | Msa0269820:intron | 20.0% |
| !!! | TTAACAGATATTTTGTTTCA+AGG | + | chr2_3:874281-874300 | Msa0269820:intron | 20.0% |
| !! | GCATTAATTGACATAAATTA+AGG | + | chr2_3:874640-874659 | Msa0269820:intron | 20.0% |
| !!! | GTTTTTAGAGTTTATTATGA+TGG | + | chr2_3:874736-874755 | Msa0269820:intron | 20.0% |
| !!! | TATCTTTCTTTTTATAGACA+AGG | - | chr2_3:876236-876255 | None:intergenic | 20.0% |
| !! | ATATACACAACTTACTTTAA+TGG | - | chr2_3:876330-876349 | None:intergenic | 20.0% |
| !! | TAAGTTGTGTATATTTAAGT+TGG | + | chr2_3:876336-876355 | Msa0269820:intron | 20.0% |
| !!! | AAGTTGTGTATATTTAAGTT+GGG | + | chr2_3:876337-876356 | Msa0269820:intron | 20.0% |
| !! | GAAGATAAAGTAAATTTATG+GGG | - | chr2_3:876382-876401 | None:intergenic | 20.0% |
| !! | GGAAGATAAAGTAAATTTAT+GGG | - | chr2_3:876383-876402 | None:intergenic | 20.0% |
| !! | AGGAAGATAAAGTAAATTTA+TGG | - | chr2_3:876384-876403 | None:intergenic | 20.0% |
| !! | TCATACAATTTGCATAAAAA+GGG | - | chr2_3:876839-876858 | None:intergenic | 20.0% |
| !! | TTCATACAATTTGCATAAAA+AGG | - | chr2_3:876840-876859 | None:intergenic | 20.0% |
| !! | ATCATCTTAAACTATAAGAT+GGG | - | chr2_3:877697-877716 | None:intergenic | 20.0% |
| !! | ATTCATTATTAAGAGTAAGA+GGG | - | chr2_3:877739-877758 | None:intergenic | 20.0% |
| !! | AATTCATTATTAAGAGTAAG+AGG | - | chr2_3:877740-877759 | None:intergenic | 20.0% |
| !!! | TGCAAATAGTTCTAATAATG+TGG | - | chr2_3:872055-872074 | None:intergenic | 25.0% |
| ! | ATGAAAAAGAAGAAGAATGA+AGG | - | chr2_3:872112-872131 | None:intergenic | 25.0% |
| !!! | ATTTTGACCAATTACGTTAA+TGG | + | chr2_3:872287-872306 | Msa0269820:intron | 25.0% |
| ! | AACAATACCATTAACGTAAT+TGG | - | chr2_3:872297-872316 | None:intergenic | 25.0% |
| ! | GTATTGTTCTTACTTATTTC+AGG | + | chr2_3:873153-873172 | Msa0269820:intron | 25.0% |
| !!! | TCACCTTTTTGATTTAATGA+AGG | + | chr2_3:873536-873555 | Msa0269820:CDS | 25.0% |
| ! | GTTCCTTCATTAAATCAAAA+AGG | - | chr2_3:873542-873561 | None:intergenic | 25.0% |
| !! | TTTGATTTAATGAAGGAACA+AGG | + | chr2_3:873543-873562 | Msa0269820:CDS | 25.0% |
| ! | CAATTGTATACAAAAGAAGT+GGG | - | chr2_3:873596-873615 | None:intergenic | 25.0% |
| ! | TCAATTGTATACAAAAGAAG+TGG | - | chr2_3:873597-873616 | None:intergenic | 25.0% |
| !! | TCTTTTGTATACAATTGACA+TGG | + | chr2_3:873599-873618 | Msa0269820:CDS | 25.0% |
| !! | CTTTTGTATACAATTGACAT+GGG | + | chr2_3:873600-873619 | Msa0269820:CDS | 25.0% |
| !!! | AATTTTGAAACATGCATGTT+TGG | - | chr2_3:874187-874206 | None:intergenic | 25.0% |
| ! | AAACATGCATGTTTCAAAAT+TGG | + | chr2_3:874186-874205 | Msa0269820:intron | 25.0% |
| !! | TAATTTTCTGCGACATAAAT+TGG | - | chr2_3:874329-874348 | None:intergenic | 25.0% |
| ! | TGTCGCAGAAAATTATTTAT+TGG | + | chr2_3:874334-874353 | Msa0269820:intron | 25.0% |
| ! | ATAAAAAAGCTTTCATCTGT+TGG | + | chr2_3:874413-874432 | Msa0269820:CDS | 25.0% |
| !! | AATAAACTCTAAAAACACAC+TGG | - | chr2_3:874732-874751 | None:intergenic | 25.0% |
| ! | TAGAGTTTATTATGATGGTA+TGG | + | chr2_3:874741-874760 | Msa0269820:intron | 25.0% |
| ! | GGCAAAAAATTATAGAGAAA+GGG | - | chr2_3:874781-874800 | None:intergenic | 25.0% |
| ! | ATCTCACTAAAATATGTACA+GGG | - | chr2_3:874802-874821 | None:intergenic | 25.0% |
| ! | AATCTCACTAAAATATGTAC+AGG | - | chr2_3:874803-874822 | None:intergenic | 25.0% |
| !!! | GTAGAATATTTTAAGTAGCT+TGG | + | chr2_3:875389-875408 | Msa0269820:intron | 25.0% |
| ! | TTATAAGCTAGATATCGAAA+GGG | - | chr2_3:875420-875439 | None:intergenic | 25.0% |
| !! | TTTCGATATCTAGCTTATAA+GGG | + | chr2_3:875420-875439 | Msa0269820:intron | 25.0% |
| ! | TAGCACAAGATAATTCAAAA+TGG | + | chr2_3:875786-875805 | Msa0269820:intron | 25.0% |
| ! | GTTTCTACTCAATATAAATC+AGG | - | chr2_3:875845-875864 | None:intergenic | 25.0% |
| !! | TTTTATTCATGCATGTTCTT+TGG | + | chr2_3:875971-875990 | Msa0269820:intron | 25.0% |
| ! | AAGAAAGATAATCTAGTACT+CGG | + | chr2_3:876246-876265 | Msa0269820:intron | 25.0% |
| !! | AAATCTGTTTGTCATGTTTT+TGG | - | chr2_3:876303-876322 | None:intergenic | 25.0% |
| !! | TCAAGAATACATTTTTGACA+AGG | - | chr2_3:876404-876423 | None:intergenic | 25.0% |
| ! | AACTAAATGATACATCCTAT+TGG | + | chr2_3:876575-876594 | Msa0269820:intron | 25.0% |
| !!! | GCTTATGTTGATTTTGATTT+TGG | + | chr2_3:876717-876736 | Msa0269820:intron | 25.0% |
| ! | TAAGTTACAAATTGATGAAC+TGG | + | chr2_3:876777-876796 | Msa0269820:intron | 25.0% |
| ! | TATGAATGTTCTCTTTGATA+AGG | + | chr2_3:876801-876820 | Msa0269820:intron | 25.0% |
| !! | ATTTTTGTCTGCATGATTAT+AGG | + | chr2_3:877319-877338 | Msa0269820:intron | 25.0% |
| ! | AGCATTATGTGAATTATCAT+TGG | - | chr2_3:877480-877499 | None:intergenic | 25.0% |
| !! | CATTTTTCTTTCTTTCAAGA+GGG | - | chr2_3:877644-877663 | None:intergenic | 25.0% |
| !! | ACATTTTTCTTTCTTTCAAG+AGG | - | chr2_3:877645-877664 | None:intergenic | 25.0% |
| ! | TCATCTTAAACTATAAGATG+GGG | - | chr2_3:877696-877715 | None:intergenic | 25.0% |
| ! | CATCATCTTAAACTATAAGA+TGG | - | chr2_3:877698-877717 | None:intergenic | 25.0% |
| !! | CTGTTTCTGTAATGTAGAAA+TGG | - | chr2_3:871967-871986 | None:intergenic | 30.0% |
| AGAAGAATGAAGGTTGAATT+TGG | - | chr2_3:872102-872121 | None:intergenic | 30.0% | |
| ! | ATCAACATCAAGTTTGGAAT+GGG | - | chr2_3:872150-872169 | None:intergenic | 30.0% |
| AATCAACATCAAGTTTGGAA+TGG | - | chr2_3:872151-872170 | None:intergenic | 30.0% | |
| GATAGAATCAACATCAAGTT+TGG | - | chr2_3:872156-872175 | None:intergenic | 30.0% | |
| ! | CAGATTTCCTCTATTTTCTA+CGG | + | chr2_3:872440-872459 | Msa0269820:CDS | 30.0% |
| !!! | TGTATGTGTCTGTTTTGATT+AGG | + | chr2_3:872491-872510 | Msa0269820:intron | 30.0% |
| !!! | TGTCTGTTTTGATTAGGATA+TGG | + | chr2_3:872497-872516 | Msa0269820:intron | 30.0% |
| ATTCATAGGAGGTGAAAAAA+GGG | - | chr2_3:872799-872818 | None:intergenic | 30.0% | |
| TATTCATAGGAGGTGAAAAA+AGG | - | chr2_3:872800-872819 | None:intergenic | 30.0% | |
| TACACTAATAGTAGTTCAAG+TGG | - | chr2_3:873136-873155 | None:intergenic | 30.0% | |
| TTGTTCTTACTTATTTCAGG+TGG | + | chr2_3:873156-873175 | Msa0269820:intron | 30.0% | |
| AGAGTAATATATCATTGCGA+AGG | + | chr2_3:873271-873290 | Msa0269820:CDS | 30.0% | |
| TTGCACAACTTTCAATTAAG+CGG | - | chr2_3:873362-873381 | None:intergenic | 30.0% | |
| CACTTTATCAAACAACTCAA+GGG | - | chr2_3:873406-873425 | None:intergenic | 30.0% | |
| ! | CTTGAGTTGTTTGATAAAGT+GGG | + | chr2_3:873405-873424 | Msa0269820:CDS | 30.0% |
| AGACATTGCAATTGAAGAAA+TGG | + | chr2_3:873503-873522 | Msa0269820:CDS | 30.0% | |
| GACATTGCAATTGAAGAAAT+GGG | + | chr2_3:873504-873523 | Msa0269820:CDS | 30.0% | |
| ACATTGCAATTGAAGAAATG+GGG | + | chr2_3:873505-873524 | Msa0269820:CDS | 30.0% | |
| CTGTCATATTATCAAAGAAG+AGG | + | chr2_3:873647-873666 | Msa0269820:CDS | 30.0% | |
| TATGCTCAAACTTCTATCAT+TGG | + | chr2_3:873867-873886 | Msa0269820:intron | 30.0% | |
| TGAACATCTATGTACAGAAA+AGG | - | chr2_3:874258-874277 | None:intergenic | 30.0% | |
| ! | TATCTTCTTGTTGTAACCTT+CGG | + | chr2_3:874538-874557 | Msa0269820:intron | 30.0% |
| ! | ATTATTCTTTTCCAAACCGA+AGG | - | chr2_3:874557-874576 | None:intergenic | 30.0% |
| AGGCTGCAAATATATTTCTT+TGG | + | chr2_3:874660-874679 | Msa0269820:intron | 30.0% | |
| AGTTTATTATGATGGTATGG+AGG | + | chr2_3:874744-874763 | Msa0269820:intron | 30.0% | |
| GTTTATTATGATGGTATGGA+GGG | + | chr2_3:874745-874764 | Msa0269820:intron | 30.0% | |
| GGGCAAAAAATTATAGAGAA+AGG | - | chr2_3:874782-874801 | None:intergenic | 30.0% | |
| TGCATAAAGTAAGTACTTCA+CGG | - | chr2_3:874952-874971 | None:intergenic | 30.0% | |
| GTAACACAAAAATGTGAAAC+TGG | - | chr2_3:875001-875020 | None:intergenic | 30.0% | |
| AGAATAGGTCCAAACTTTAA+AGG | - | chr2_3:875153-875172 | None:intergenic | 30.0% | |
| !!! | TTCGATTTTTTACACAGAAC+TGG | + | chr2_3:875203-875222 | Msa0269820:intron | 30.0% |
| !!! | TCGATTTTTTACACAGAACT+GGG | + | chr2_3:875204-875223 | Msa0269820:intron | 30.0% |
| ! | ATCGAGTAGTATGAGATTTT+CGG | + | chr2_3:875367-875386 | Msa0269820:intron | 30.0% |
| TATAAGCTAGATATCGAAAG+GGG | - | chr2_3:875419-875438 | None:intergenic | 30.0% | |
| CTTATAAGCTAGATATCGAA+AGG | - | chr2_3:875421-875440 | None:intergenic | 30.0% | |
| ! | CTTTCGATATCTAGCTTATA+AGG | + | chr2_3:875419-875438 | Msa0269820:intron | 30.0% |
| !! | TTTTAAGGGACAGTTTCATA+AGG | + | chr2_3:875646-875665 | Msa0269820:intron | 30.0% |
| TTTAAGGGACAGTTTCATAA+GGG | + | chr2_3:875647-875666 | Msa0269820:intron | 30.0% | |
| ! | GATAATTCAAAATGGCTTGT+TGG | + | chr2_3:875794-875813 | Msa0269820:intron | 30.0% |
| ACCTTTGACAAATTTGATTG+TGG | - | chr2_3:875949-875968 | None:intergenic | 30.0% | |
| TGTTTCATCTGATGTATTGT+TGG | + | chr2_3:876044-876063 | Msa0269820:intron | 30.0% | |
| ! | TCTTTTTATAGACAAGGTTC+TGG | - | chr2_3:876230-876249 | None:intergenic | 30.0% |
| GAATCATCTTGTGTTGTATT+TGG | + | chr2_3:876614-876633 | Msa0269820:intron | 30.0% | |
| ! | GTATTTGGAATAAGCGTTTA+AGG | + | chr2_3:876629-876648 | Msa0269820:intron | 30.0% |
| ! | TTTTGTGATCCTACATCAAT+TGG | + | chr2_3:876894-876913 | Msa0269820:intron | 30.0% |
| !!! | CTAACTTTTGGAATTGAGTT+AGG | + | chr2_3:876964-876983 | Msa0269820:intron | 30.0% |
| GCACAAAAACTACAGAATTT+GGG | - | chr2_3:876996-877015 | None:intergenic | 30.0% | |
| TGCACAAAAACTACAGAATT+TGG | - | chr2_3:876997-877016 | None:intergenic | 30.0% | |
| AACACGATCAAACTTATATG+TGG | + | chr2_3:877024-877043 | Msa0269820:intron | 30.0% | |
| !!! | GGAGTTGTTTTTAGAAATGA+AGG | + | chr2_3:877391-877410 | Msa0269820:CDS | 30.0% |
| TTAGAAATGAAGGATAAGCT+TGG | + | chr2_3:877401-877420 | Msa0269820:CDS | 30.0% | |
| ! | GAATCGTAACATTTTTGTGA+AGG | - | chr2_3:877434-877453 | None:intergenic | 30.0% |
| AATTCACATAATGCTGAATG+AGG | + | chr2_3:877485-877504 | Msa0269820:CDS | 30.0% | |
| TACATATACCCCTCTTATTA+AGG | - | chr2_3:877513-877532 | None:intergenic | 30.0% | |
| !! | TCGTAGAAATTGTTGTTTGT+GGG | - | chr2_3:877594-877613 | None:intergenic | 30.0% |
| !! | TTCGTAGAAATTGTTGTTTG+TGG | - | chr2_3:877595-877614 | None:intergenic | 30.0% |
| GAATGAAGGTTGAATTTGGT+GGG | - | chr2_3:872098-872117 | None:intergenic | 35.0% | |
| AGAATGAAGGTTGAATTTGG+TGG | - | chr2_3:872099-872118 | None:intergenic | 35.0% | |
| ACACTTACCGTAGAAAATAG+AGG | - | chr2_3:872450-872469 | None:intergenic | 35.0% | |
| TTCATAGGAGGTGAAAAAAG+GGG | - | chr2_3:872798-872817 | None:intergenic | 35.0% | |
| !! | CTGTTTTCTTGTTGTCTGAA+AGG | + | chr2_3:872840-872859 | Msa0269820:intron | 35.0% |
| AATTGTTAGCGTCATGTTAG+TGG | + | chr2_3:872885-872904 | Msa0269820:intron | 35.0% | |
| TATTTGTGCGACAACTCTAA+GGG | - | chr2_3:872943-872962 | None:intergenic | 35.0% | |
| TACATAGTGTTGTCACATAG+AGG | + | chr2_3:873021-873040 | Msa0269820:intron | 35.0% | |
| ATTTGCAGCATCAACTTTCT+CGG | - | chr2_3:873205-873224 | None:intergenic | 35.0% | |
| !! | ATATTACTCTGAGGTACGTT+TGG | - | chr2_3:873261-873280 | None:intergenic | 35.0% |
| CGCAATGATATATTACTCTG+AGG | - | chr2_3:873270-873289 | None:intergenic | 35.0% | |
| TTTCAATTAAGCGGCGAAAA+CGG | - | chr2_3:873353-873372 | None:intergenic | 35.0% | |
| GAAAGTTGTGCAAAGATACT+AGG | + | chr2_3:873369-873388 | Msa0269820:CDS | 35.0% | |
| CCACTTTATCAAACAACTCA+AGG | - | chr2_3:873407-873426 | None:intergenic | 35.0% | |
| ! | CCTTGAGTTGTTTGATAAAG+TGG | + | chr2_3:873404-873423 | Msa0269820:CDS | 35.0% |
| ! | TGCATTGGTAGAAATTTGCA+TGG | + | chr2_3:873455-873474 | Msa0269820:CDS | 35.0% |
| ! | GCATTGGTAGAAATTTGCAT+GGG | + | chr2_3:873456-873475 | Msa0269820:CDS | 35.0% |
| AAATTTGCATGGGTAAAGCT+AGG | + | chr2_3:873466-873485 | Msa0269820:CDS | 35.0% | |
| AATTTGCATGGGTAAAGCTA+GGG | + | chr2_3:873467-873486 | Msa0269820:CDS | 35.0% | |
| GTATACAATTGACATGGGTA+TGG | + | chr2_3:873605-873624 | Msa0269820:CDS | 35.0% | |
| GTTACTATGAAATGATGCTG+TGG | + | chr2_3:873694-873713 | Msa0269820:CDS | 35.0% | |
| !!! | ACACTTTTGATTTACGAGGT+GGG | + | chr2_3:873784-873803 | Msa0269820:intron | 35.0% |
| AACTTGCGAGTATATGTTAG+CGG | - | chr2_3:873900-873919 | None:intergenic | 35.0% | |
| ! | TATTTTGTCCGTGTTTTGTG+TGG | + | chr2_3:873982-874001 | Msa0269820:intron | 35.0% |
| ! | TGAACGGAAGGAGAATATTT+TGG | + | chr2_3:874370-874389 | Msa0269820:CDS | 35.0% |
| !! | CACTTGCTTTGAAGTCTAAA+AGG | - | chr2_3:874502-874521 | None:intergenic | 35.0% |
| ! | CTTTTAGACTTCAAAGCAAG+TGG | + | chr2_3:874500-874519 | Msa0269820:CDS | 35.0% |
| AGTCAGCATTCCAGATTTAT+CGG | + | chr2_3:874881-874900 | Msa0269820:CDS | 35.0% | |
| GATTTCCTTACCGATAAATC+TGG | - | chr2_3:874894-874913 | None:intergenic | 35.0% | |
| GAAACTGGTGATATAGTTCT+AGG | - | chr2_3:874986-875005 | None:intergenic | 35.0% | |
| ACCAATAATAACATAAGCGC+AGG | + | chr2_3:875126-875145 | Msa0269820:intron | 35.0% | |
| ACCTGCGCTTATGTTATTAT+TGG | - | chr2_3:875130-875149 | None:intergenic | 35.0% | |
| TCAGGGTTTAATTCGAGAAT+AGG | - | chr2_3:875168-875187 | None:intergenic | 35.0% | |
| ACTGGGATGTATCCTAAAAA+TGG | + | chr2_3:875221-875240 | Msa0269820:intron | 35.0% | |
| CTGGGATGTATCCTAAAAAT+GGG | + | chr2_3:875222-875241 | Msa0269820:intron | 35.0% | |
| TGGGATGTATCCTAAAAATG+GGG | + | chr2_3:875223-875242 | Msa0269820:intron | 35.0% | |
| !! | TTCTTGAAGTCCCCATTTTT+AGG | - | chr2_3:875236-875255 | None:intergenic | 35.0% |
| ! | AACTCGAGTTCTTTTTCTAG+AGG | + | chr2_3:875259-875278 | Msa0269820:intron | 35.0% |
| TTGATGGGACTTAAGTACTA+TGG | + | chr2_3:875328-875347 | Msa0269820:intron | 35.0% | |
| TGATGGGACTTAAGTACTAT+GGG | + | chr2_3:875329-875348 | Msa0269820:intron | 35.0% | |
| AATCTCATACTACTCGATGT+AGG | - | chr2_3:875365-875384 | None:intergenic | 35.0% | |
| ! | ACACTCTATGATGCTTTGTT+CGG | - | chr2_3:875487-875506 | None:intergenic | 35.0% |
| ! | TGATAGGGACTTGGATATTT+TGG | + | chr2_3:875541-875560 | Msa0269820:intron | 35.0% |
| ! | GATAGGGACTTGGATATTTT+GGG | + | chr2_3:875542-875561 | Msa0269820:intron | 35.0% |
| ! | ATAGGGACTTGGATATTTTG+GGG | + | chr2_3:875543-875562 | Msa0269820:intron | 35.0% |
| ! | TGTTTGGTGGAAAGTTTAAG+TGG | + | chr2_3:875596-875615 | Msa0269820:intron | 35.0% |
| AAAGAACTGCGTCTATCAAA+AGG | - | chr2_3:875694-875713 | None:intergenic | 35.0% | |
| TAAGAAACCTAGAGCAGAAT+TGG | + | chr2_3:875759-875778 | Msa0269820:intron | 35.0% | |
| CATAGTTCCATGTGAACATT+TGG | + | chr2_3:875923-875942 | Msa0269820:intron | 35.0% | |
| GCCACAATCAAATTTGTCAA+AGG | + | chr2_3:875945-875964 | Msa0269820:intron | 35.0% | |
| ! | TGTATTGTTGGTGTTCTTGA+AGG | + | chr2_3:876056-876075 | Msa0269820:intron | 35.0% |
| ! | GGGAGGCATAAATAAATTCA+AGG | + | chr2_3:876083-876102 | Msa0269820:intron | 35.0% |
| ! | TCTGGAAGTAACTTGGTAAT+CGG | - | chr2_3:876212-876231 | None:intergenic | 35.0% |
| ! | ACAGTGACTTTGTTATGGAA+GGG | - | chr2_3:876452-876471 | None:intergenic | 35.0% |
| ! | AACAGTGACTTTGTTATGGA+AGG | - | chr2_3:876453-876472 | None:intergenic | 35.0% |
| ACAGAACAGTGACTTTGTTA+TGG | - | chr2_3:876457-876476 | None:intergenic | 35.0% | |
| ! | TGATTTGTGTAAGCTTCTCA+AGG | + | chr2_3:876753-876772 | Msa0269820:intron | 35.0% |
| TTCAATGTTGACAAGAAGCA+TGG | + | chr2_3:876867-876886 | Msa0269820:intron | 35.0% | |
| GACATACTTCCAATTGATGT+AGG | - | chr2_3:876906-876925 | None:intergenic | 35.0% | |
| ATTCCAAAAGTTAGCTCAAG+AGG | - | chr2_3:876958-876977 | None:intergenic | 35.0% | |
| AAAACTACAGAATTTGGGAG+CGG | - | chr2_3:876991-877010 | None:intergenic | 35.0% | |
| TGATACAGTGTTGTCAATTG+TGG | - | chr2_3:877226-877245 | None:intergenic | 35.0% | |
| ACAAGTCAACTTGTATGCTA+TGG | - | chr2_3:877288-877307 | None:intergenic | 35.0% | |
| AAGAGTCAGAAACCAATCAT+CGG | + | chr2_3:877357-877376 | Msa0269820:CDS | 35.0% | |
| TTATCATTGGCATTTGCAGA+AGG | - | chr2_3:877467-877486 | None:intergenic | 35.0% | |
| AATGAGGCTCCTTAATAAGA+GGG | + | chr2_3:877501-877520 | Msa0269820:exon | 35.0% | |
| ACTTTGCTACTACCAACAAT+AGG | + | chr2_3:877545-877564 | Msa0269820:three_prime_UTR | 35.0% | |
| ! | AACATCAAGTTTGGAATGGG+TGG | - | chr2_3:872147-872166 | None:intergenic | 40.0% |
| CTGAATCAGAGTTTCGATGA+AGG | - | chr2_3:872193-872212 | None:intergenic | 40.0% | |
| CTTCATCGAAACTCTGATTC+AGG | + | chr2_3:872191-872210 | Msa0269820:CDS | 40.0% | |
| TGCAGATGAATTGTCTGAAG+CGG | + | chr2_3:872409-872428 | Msa0269820:intron | 40.0% | |
| AGAAAAGTAACCACGTGTGT+CGG | - | chr2_3:872686-872705 | None:intergenic | 40.0% | |
| TACTAGTGTCAGTGTTGTGT+CGG | + | chr2_3:872714-872733 | Msa0269820:intron | 40.0% | |
| TCATAGGAGGTGAAAAAAGG+GGG | - | chr2_3:872797-872816 | None:intergenic | 40.0% | |
| TTAGCGTCATGTTAGTGGTT+AGG | + | chr2_3:872890-872909 | Msa0269820:intron | 40.0% | |
| TAGCGTCATGTTAGTGGTTA+GGG | + | chr2_3:872891-872910 | Msa0269820:intron | 40.0% | |
| CTATTTGTGCGACAACTCTA+AGG | - | chr2_3:872944-872963 | None:intergenic | 40.0% | |
| CCAATGTTGTCAATAGATCG+CGG | - | chr2_3:873102-873121 | None:intergenic | 40.0% | |
| TGCAAAGATACTAGGAACTG+AGG | + | chr2_3:873377-873396 | Msa0269820:CDS | 40.0% | |
| CGTGAAAGGATACAATGCAT+TGG | + | chr2_3:873440-873459 | Msa0269820:CDS | 40.0% | |
| TGCAATTGAAGAAATGGGGA+AGG | + | chr2_3:873509-873528 | Msa0269820:CDS | 40.0% | |
| !!! | GACGACACTTTTGATTTACG+AGG | + | chr2_3:873780-873799 | Msa0269820:CDS | 40.0% |
| !!! | GACACTTTTGATTTACGAGG+TGG | + | chr2_3:873783-873802 | Msa0269820:intron | 40.0% |
| CCAATTAGCCACACAAAACA+CGG | - | chr2_3:873993-874012 | None:intergenic | 40.0% | |
| TGGCTCTTTGTGAAAGTGAA+CGG | + | chr2_3:874354-874373 | Msa0269820:CDS | 40.0% | |
| TCTTTGTGAAAGTGAACGGA+AGG | + | chr2_3:874358-874377 | Msa0269820:CDS | 40.0% | |
| !! | ACGGAAGGAGAATATTTTGG+AGG | + | chr2_3:874373-874392 | Msa0269820:CDS | 40.0% |
| !! | GGAGAATATTTTGGAGGTGT+TGG | + | chr2_3:874379-874398 | Msa0269820:CDS | 40.0% |
| !! | TTTGGAGGTGTTGGAAATCA+TGG | + | chr2_3:874388-874407 | Msa0269820:CDS | 40.0% |
| !! | CTCTATAGCGAAGGTATTTC+AGG | + | chr2_3:874436-874455 | Msa0269820:CDS | 40.0% |
| ! | TCTTGTTGTAACCTTCGGTT+TGG | + | chr2_3:874543-874562 | Msa0269820:intron | 40.0% |
| TATGATGGTATGGAGGGATT+AGG | + | chr2_3:874751-874770 | Msa0269820:intron | 40.0% | |
| GACTGTGTAACTAGCAATGA+AGG | - | chr2_3:874865-874884 | None:intergenic | 40.0% | |
| GCATTCCAGATTTATCGGTA+AGG | + | chr2_3:874886-874905 | Msa0269820:intron | 40.0% | |
| CAGAAACTATATCATGCACG+AGG | - | chr2_3:874916-874935 | None:intergenic | 40.0% | |
| TCAAATGATGACTACCCACA+TGG | - | chr2_3:875312-875331 | None:intergenic | 40.0% | |
| TGTGGGTAGTCATCATTTGA+TGG | + | chr2_3:875312-875331 | Msa0269820:intron | 40.0% | |
| GTGGGTAGTCATCATTTGAT+GGG | + | chr2_3:875313-875332 | Msa0269820:intron | 40.0% | |
| GATGGGACTTAAGTACTATG+GGG | + | chr2_3:875330-875349 | Msa0269820:intron | 40.0% | |
| ATGGGACTTAAGTACTATGG+GGG | + | chr2_3:875331-875350 | Msa0269820:intron | 40.0% | |
| ATACTACTCGATGTAGGACT+TGG | - | chr2_3:875359-875378 | None:intergenic | 40.0% | |
| ! | CGATATCTAGCTTATAAGGG+AGG | + | chr2_3:875423-875442 | Msa0269820:intron | 40.0% |
| ! | ATCTAGCTTATAAGGGAGGT+TGG | + | chr2_3:875427-875446 | Msa0269820:intron | 40.0% |
| ! | TCTAGCTTATAAGGGAGGTT+GGG | + | chr2_3:875428-875447 | Msa0269820:intron | 40.0% |
| TTATAAGGGAGGTTGGGAAA+GGG | + | chr2_3:875434-875453 | Msa0269820:intron | 40.0% | |
| ! | ATCCTATGCTACTTGACATG+AGG | - | chr2_3:875577-875596 | None:intergenic | 40.0% |
| GTCAAGTAGCATAGGATGTT+TGG | + | chr2_3:875580-875599 | Msa0269820:intron | 40.0% | |
| AAGTAGCATAGGATGTTTGG+TGG | + | chr2_3:875583-875602 | Msa0269820:intron | 40.0% | |
| TTAAAAGCTAGCTATCGAGG+GGG | - | chr2_3:875632-875651 | None:intergenic | 40.0% | |
| CTTAAAAGCTAGCTATCGAG+GGG | - | chr2_3:875633-875652 | None:intergenic | 40.0% | |
| CCTTAAAAGCTAGCTATCGA+GGG | - | chr2_3:875634-875653 | None:intergenic | 40.0% | |
| !!! | CCTCGATAGCTAGCTTTTAA+GGG | + | chr2_3:875632-875651 | Msa0269820:intron | 40.0% |
| ATTGTGGCCAAATGTTCACA+TGG | - | chr2_3:875933-875952 | None:intergenic | 40.0% | |
| ! | TTGGTGTTCTTGAAGGTTGA+GGG | + | chr2_3:876063-876082 | Msa0269820:intron | 40.0% |
| TTCTCATATGACGAGGAAGA+AGG | - | chr2_3:876135-876154 | None:intergenic | 40.0% | |
| AATGAGCTTCTCATATGACG+AGG | - | chr2_3:876142-876161 | None:intergenic | 40.0% | |
| !! | ACAAGGTTCTGGAAGTAACT+TGG | - | chr2_3:876219-876238 | None:intergenic | 40.0% |
| TGTTATGGAAGGGTTCTTTG+AGG | - | chr2_3:876442-876461 | None:intergenic | 40.0% | |
| ATCTGAATGCTATGCCTCAT+AGG | + | chr2_3:876501-876520 | Msa0269820:intron | 40.0% | |
| CAATTGATCGAACTCTCCAT+CGG | - | chr2_3:876539-876558 | None:intergenic | 40.0% | |
| ! | TCAATTGCTTCTGCTACTTG+AGG | + | chr2_3:876552-876571 | Msa0269820:intron | 40.0% |
| AAAAGTTAGCTCAAGAGGTG+AGG | - | chr2_3:876953-876972 | None:intergenic | 40.0% | |
| ! | TCACCTCTTGAGCTAACTTT+TGG | + | chr2_3:876952-876971 | Msa0269820:intron | 40.0% |
| AAACTACAGAATTTGGGAGC+GGG | - | chr2_3:876990-877009 | None:intergenic | 40.0% | |
| GTGTTGTCAATTGTGGAATG+CGG | - | chr2_3:877219-877238 | None:intergenic | 40.0% | |
| ! | TGAAGGATAAGCTTGGTCTT+TGG | + | chr2_3:877408-877427 | Msa0269820:CDS | 40.0% |
| GAATGAGGCTCCTTAATAAG+AGG | + | chr2_3:877500-877519 | Msa0269820:exon | 40.0% | |
| ATGAGGCTCCTTAATAAGAG+GGG | + | chr2_3:877502-877521 | Msa0269820:exon | 40.0% | |
| ! | GTGCTGGTGTACATACAAAT+TGG | + | chr2_3:877567-877586 | Msa0269820:three_prime_UTR | 40.0% |
| CTTTCTTTCAAGAGGGTGAA+GGG | - | chr2_3:877637-877656 | None:intergenic | 40.0% | |
| TCTTTCTTTCAAGAGGGTGA+AGG | - | chr2_3:877638-877657 | None:intergenic | 40.0% | |
| TGGGTGAATGTGTACGAAAG+GGG | - | chr2_3:872079-872098 | None:intergenic | 45.0% | |
| GTGGGTGAATGTGTACGAAA+GGG | - | chr2_3:872080-872099 | None:intergenic | 45.0% | |
| CAGAGTTTCGATGAAGGTTG+AGG | - | chr2_3:872187-872206 | None:intergenic | 45.0% | |
| TAGAACTGACACTGCTACAG+AGG | - | chr2_3:872563-872582 | None:intergenic | 45.0% | |
| TGTAGCAGTGTCAGTTCTAC+TGG | + | chr2_3:872564-872583 | Msa0269820:intron | 45.0% | |
| AGTGGTTAGGGTTTGAACCT+TGG | + | chr2_3:872903-872922 | Msa0269820:intron | 45.0% | |
| CCGCGATCTATTGACAACAT+TGG | + | chr2_3:873099-873118 | Msa0269820:intron | 45.0% | |
| GCATCAACTTTCTCGGTATC+AGG | - | chr2_3:873198-873217 | None:intergenic | 45.0% | |
| GATAAAGTGGGACGAAAACC+AGG | + | chr2_3:873417-873436 | Msa0269820:CDS | 45.0% | |
| TCCCAATTCAACTGCAAGAC+TGG | + | chr2_3:873671-873690 | Msa0269820:CDS | 45.0% | |
| CCCAGTCTTGCAGTTGAATT+GGG | - | chr2_3:873675-873694 | None:intergenic | 45.0% | |
| CCCAATTCAACTGCAAGACT+GGG | + | chr2_3:873672-873691 | Msa0269820:CDS | 45.0% | |
| ACCCAGTCTTGCAGTTGAAT+TGG | - | chr2_3:873676-873695 | None:intergenic | 45.0% | |
| ! | CCGTGTTTTGTGTGGCTAAT+TGG | + | chr2_3:873990-874009 | Msa0269820:intron | 45.0% |
| AAATTGGTGCATCCACTGTC+TGG | + | chr2_3:874202-874221 | Msa0269820:intron | 45.0% | |
| TATGTCTCCAAACCAGACAG+TGG | - | chr2_3:874217-874236 | None:intergenic | 45.0% | |
| !! | ATCTGTTGGCTCTATAGCGA+AGG | + | chr2_3:874427-874446 | Msa0269820:CDS | 45.0% |
| !! | AGCGAAGGTATTTCAGGCAT+TGG | + | chr2_3:874442-874461 | Msa0269820:CDS | 45.0% |
| !! | GCGAAGGTATTTCAGGCATT+GGG | + | chr2_3:874443-874462 | Msa0269820:CDS | 45.0% |
| ! | GGCATTGGGAAGACTACTAT+TGG | + | chr2_3:874457-874476 | Msa0269820:CDS | 45.0% |
| ACTATTGGAACCTGTTGCAG+AGG | + | chr2_3:874472-874491 | Msa0269820:CDS | 45.0% | |
| !! | AGCGCAGGTCCTTTAAAGTT+TGG | + | chr2_3:875141-875160 | Msa0269820:intron | 45.0% |
| TTAAACCCTGAGTCTGCAGT+AGG | + | chr2_3:875177-875196 | Msa0269820:intron | 45.0% | |
| AATGTCCTACTGCAGACTCA+GGG | - | chr2_3:875185-875204 | None:intergenic | 45.0% | |
| ATGACTACCCACATGGTGTT+GGG | - | chr2_3:875305-875324 | None:intergenic | 45.0% | |
| CTTATAAGGGAGGTTGGGAA+AGG | + | chr2_3:875433-875452 | Msa0269820:intron | 45.0% | |
| GCATCATAGAGTGTAGCTTC+CGG | + | chr2_3:875493-875512 | Msa0269820:intron | 45.0% | |
| CATCATAGAGTGTAGCTTCC+GGG | + | chr2_3:875494-875513 | Msa0269820:intron | 45.0% | |
| ATCATAGAGTGTAGCTTCCG+GGG | + | chr2_3:875495-875514 | Msa0269820:intron | 45.0% | |
| ! | ATGCTACTTGACATGAGGCT+TGG | - | chr2_3:875572-875591 | None:intergenic | 45.0% |
| AGCCTCATGTCAAGTAGCAT+AGG | + | chr2_3:875572-875591 | Msa0269820:intron | 45.0% | |
| GGTGGAAAGTTTAAGTGGCT+TGG | + | chr2_3:875601-875620 | Msa0269820:intron | 45.0% | |
| !!! | CCCTCGATAGCTAGCTTTTA+AGG | + | chr2_3:875631-875650 | Msa0269820:intron | 45.0% |
| CCCTTAAAAGCTAGCTATCG+AGG | - | chr2_3:875635-875654 | None:intergenic | 45.0% | |
| GAAACCTAGAGCAGAATTGG+TGG | + | chr2_3:875762-875781 | Msa0269820:intron | 45.0% | |
| CTATCCACCAATTCTGCTCT+AGG | - | chr2_3:875769-875788 | None:intergenic | 45.0% | |
| CCAAACACACGATTAGTGAC+AGG | - | chr2_3:876004-876023 | None:intergenic | 45.0% | |
| CCTGTCACTAATCGTGTGTT+TGG | + | chr2_3:876001-876020 | Msa0269820:intron | 45.0% | |
| ! | GTTGGTGTTCTTGAAGGTTG+AGG | + | chr2_3:876062-876081 | Msa0269820:intron | 45.0% |
| ACGTAACTGTGCATTGCTCA+AGG | + | chr2_3:876164-876183 | Msa0269820:intron | 45.0% | |
| GCAGCAAGCATCATTCCAAT+AGG | - | chr2_3:876593-876612 | None:intergenic | 45.0% | |
| CAGCTGCTGTGTGAAAACAT+TGG | - | chr2_3:877059-877078 | None:intergenic | 45.0% | |
| ! | CGCTAAAGCACTACTATAGC+TGG | - | chr2_3:877161-877180 | None:intergenic | 45.0% |
| CTATAGTAGTGCTTTAGCGC+TGG | + | chr2_3:877162-877181 | Msa0269820:intron | 45.0% | |
| CATGCAAGTTTGCCGATGAT+TGG | - | chr2_3:877372-877391 | None:intergenic | 45.0% | |
| CAATCATCGGCAAACTTGCA+TGG | + | chr2_3:877370-877389 | Msa0269820:CDS | 45.0% | |
| CTACTACCAACAATAGGTGC+TGG | + | chr2_3:877551-877570 | Msa0269820:three_prime_UTR | 45.0% | |
| TGTACACCAGCACCTATTGT+TGG | - | chr2_3:877560-877579 | None:intergenic | 45.0% | |
| GGGTGAATGTGTACGAAAGG+GGG | - | chr2_3:872078-872097 | None:intergenic | 50.0% | |
| GGTGGGTGAATGTGTACGAA+AGG | - | chr2_3:872081-872100 | None:intergenic | 50.0% | |
| ! | GTCTGTGTCACTGTCTTGTC+CGG | + | chr2_3:872658-872677 | Msa0269820:intron | 50.0% |
| ! | TGTGCGACAACTCTAAGGGT+TGG | - | chr2_3:872939-872958 | None:intergenic | 50.0% |
| TGACAACATTGGACCTCGCT+TGG | + | chr2_3:873110-873129 | Msa0269820:intron | 50.0% | |
| GCATTGTATCCTTTCACGCC+TGG | - | chr2_3:873438-873457 | None:intergenic | 50.0% | |
| GGGCGATATGTTTGCTCTTC+TGG | - | chr2_3:873576-873595 | None:intergenic | 50.0% | |
| AAAAGGAGCTCCTCTGCAAC+AGG | - | chr2_3:874485-874504 | None:intergenic | 50.0% | |
| GAATGTCCTACTGCAGACTC+AGG | - | chr2_3:875186-875205 | None:intergenic | 50.0% | |
| CAACTCTCCCAACACCATGT+GGG | + | chr2_3:875295-875314 | Msa0269820:intron | 50.0% | |
| GATGACTACCCACATGGTGT+TGG | - | chr2_3:875306-875325 | None:intergenic | 50.0% | |
| !! | AGGTTGGGAAAGGGTACCTA+TGG | + | chr2_3:875443-875462 | Msa0269820:intron | 50.0% |
| !! | TTGGGAAAGGGTACCTATGG+AGG | + | chr2_3:875446-875465 | Msa0269820:intron | 50.0% |
| !! | TGGGAAAGGGTACCTATGGA+GGG | + | chr2_3:875447-875466 | Msa0269820:intron | 50.0% |
| ! | GATGCTTTGTTCGGCCATTG+CGG | - | chr2_3:875478-875497 | None:intergenic | 50.0% |
| TCTCGGGCAGAGCTATGATA+GGG | + | chr2_3:875526-875545 | Msa0269820:intron | 50.0% | |
| GCAGAGCTATGATAGGGACT+TGG | + | chr2_3:875532-875551 | Msa0269820:intron | 50.0% | |
| GGGACAGTTTCATAAGGGCT+TGG | + | chr2_3:875652-875671 | Msa0269820:intron | 50.0% | |
| GTGTTCTTGAAGGTTGAGGG+AGG | + | chr2_3:876066-876085 | Msa0269820:intron | 50.0% | |
| GGAACAAGTGTGCTCCTATG+AGG | - | chr2_3:876518-876537 | None:intergenic | 50.0% | |
| ! | TAGGAGCACACTTGTTCCGA+TGG | + | chr2_3:876520-876539 | Msa0269820:intron | 50.0% |
| GATGAAGGTTGAGGCTTGCG+AGG | - | chr2_3:872178-872197 | None:intergenic | 55.0% | |
| GGGTTGGAGAATCAGCTCCA+AGG | - | chr2_3:872923-872942 | None:intergenic | 55.0% | |
| GTAGTTCAAGTGGCCAAGCG+AGG | - | chr2_3:873126-873145 | None:intergenic | 55.0% | |
| GGACGAAAACCAGGCGTGAA+AGG | + | chr2_3:873426-873445 | Msa0269820:CDS | 55.0% | |
| GGTGCATCCACTGTCTGGTT+TGG | + | chr2_3:874207-874226 | Msa0269820:intron | 55.0% | |
| ! | CCACATGGTGTTGGGAGAGT+TGG | - | chr2_3:875297-875316 | None:intergenic | 55.0% |
| CCAACTCTCCCAACACCATG+TGG | + | chr2_3:875294-875313 | Msa0269820:intron | 55.0% | |
| !! | GGGAAAGGGTACCTATGGAG+GGG | + | chr2_3:875448-875467 | Msa0269820:intron | 55.0% |
| ATTGCGGTCAACCCCTCCAT+AGG | - | chr2_3:875462-875481 | None:intergenic | 55.0% | |
| TATGGAGGGGTTGACCGCAA+TGG | + | chr2_3:875461-875480 | Msa0269820:intron | 55.0% | |
| AGTGTAGCTTCCGGGGACAT+CGG | + | chr2_3:875502-875521 | Msa0269820:intron | 55.0% | |
| CTCTCGGGCAGAGCTATGAT+AGG | + | chr2_3:875525-875544 | Msa0269820:intron | 55.0% | |
| !! | GTGCTTTAGCGCTGGCGTAA+TGG | + | chr2_3:877170-877189 | Msa0269820:intron | 55.0% |
| ! | GTAACCACGTGTGTCGGCGC+CGG | - | chr2_3:872680-872699 | None:intergenic | 65.0% |
| !! | CTTCCGGGGACATCGGCTCT+CGG | + | chr2_3:875509-875528 | Msa0269820:intron | 65.0% |
| !! | TTCCGGGGACATCGGCTCTC+GGG | + | chr2_3:875510-875529 | Msa0269820:intron | 65.0% |
| !! | TTGTCCGGCGCCGACACACG+TGG | + | chr2_3:872673-872692 | Msa0269820:intron | 70.0% |
| TGCCCGAGAGCCGATGTCCC+CGG | - | chr2_3:875515-875534 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 871939 | 877787 | 871939 | ID=Msa0269820;Name=Msa0269820 |
| chr2_3 | mRNA | 871939 | 877787 | 871939 | ID=Msa0269820-mRNA-1;Parent=Msa0269820;Name=Msa0269820-mRNA-1;_AED=0.12;_eAED=0.12;_QI=102|0.6|0.83|1|1|1|6|282|406 |
| chr2_3 | exon | 871939 | 872212 | 871939 | ID=Msa0269820-mRNA-1:exon:398;Parent=Msa0269820-mRNA-1 |
| chr2_3 | exon | 872414 | 872461 | 872414 | ID=Msa0269820-mRNA-1:exon:399;Parent=Msa0269820-mRNA-1 |
| chr2_3 | exon | 873211 | 873801 | 873211 | ID=Msa0269820-mRNA-1:exon:400;Parent=Msa0269820-mRNA-1 |
| chr2_3 | exon | 874342 | 874521 | 874342 | ID=Msa0269820-mRNA-1:exon:401;Parent=Msa0269820-mRNA-1 |
| chr2_3 | exon | 874838 | 874902 | 874838 | ID=Msa0269820-mRNA-1:exon:402;Parent=Msa0269820-mRNA-1 |
| chr2_3 | exon | 877341 | 877787 | 877341 | ID=Msa0269820-mRNA-1:exon:403;Parent=Msa0269820-mRNA-1 |
| chr2_3 | five_prime_UTR | 871939 | 872040 | 871939 | ID=Msa0269820-mRNA-1:five_prime_utr;Parent=Msa0269820-mRNA-1 |
| chr2_3 | CDS | 872041 | 872212 | 872041 | ID=Msa0269820-mRNA-1:cds;Parent=Msa0269820-mRNA-1 |
| chr2_3 | CDS | 872414 | 872461 | 872414 | ID=Msa0269820-mRNA-1:cds;Parent=Msa0269820-mRNA-1 |
| chr2_3 | CDS | 873211 | 873801 | 873211 | ID=Msa0269820-mRNA-1:cds;Parent=Msa0269820-mRNA-1 |
| chr2_3 | CDS | 874342 | 874521 | 874342 | ID=Msa0269820-mRNA-1:cds;Parent=Msa0269820-mRNA-1 |
| chr2_3 | CDS | 874838 | 874902 | 874838 | ID=Msa0269820-mRNA-1:cds;Parent=Msa0269820-mRNA-1 |
| chr2_3 | CDS | 877341 | 877505 | 877341 | ID=Msa0269820-mRNA-1:cds;Parent=Msa0269820-mRNA-1 |
| chr2_3 | three_prime_UTR | 877506 | 877787 | 877506 | ID=Msa0269820-mRNA-1:three_prime_utr;Parent=Msa0269820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
