AlfalfaGEDB | Msa0263310

M. sativa cultivar zhongmu-4 / Msa0263310

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263310	XP_003597159.1	97.980	198	4	0	1	198	1	198	1.04e-141	403

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263310	sp\|Q9SK08\|LBD11_ARATH	66.667	186	42	4	29	198	51	232	3.89e-79	238

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263310	G7IKN3	97.980	198	4	0	1	198	1	198	4.99e-142	403

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TFs/TRs:

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Gene ID	Type	Classification
Msa0263310	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0263310	Msa0300880	0.973698	7.166072e-137	-8.615850e-47
Msa0263310	Msa0338430	0.894456	2.424070e-75	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263310	MtrunA17_Chr4g0030001	73.913	184	42	4	17	198	11	190	1.41e-95	276
Msa0263310	MtrunA17_Chr2g0326051	94.400	125	7	0	74	198	1	125	4.34e-84	244
Msa0263310	MtrunA17_Chr1g0200201	72.121	165	38	4	34	198	73	229	5.43e-78	233
Msa0263310	MtrunA17_Chr2g0311601	69.912	113	34	0	28	140	8	120	1.98e-57	178
Msa0263310	MtrunA17_Chr2g0326041	98.734	79	1	0	1	79	1	79	7.24e-53	164
Msa0263310	MtrunA17_Chr4g0043421	64.035	114	41	0	28	141	10	123	1.42e-52	166
Msa0263310	MtrunA17_Chr5g0437571	63.717	113	41	0	32	144	5	117	2.46e-51	163
Msa0263310	MtrunA17_Chr3g0114061	63.964	111	40	0	32	142	7	117	5.23e-51	162
Msa0263310	MtrunA17_Chr3g0106101	62.385	109	41	0	32	140	6	114	4.07e-49	157
Msa0263310	MtrunA17_Chr5g0438091	56.637	113	49	0	32	144	38	150	2.18e-44	146

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263310	AT2G28500.1	66.667	186	42	4	29	198	51	232	3.96e-80	238
Msa0263310	AT1G07900.1	61.194	201	63	3	1	198	1	189	4.55e-79	234
Msa0263310	AT2G30130.1	65.741	108	37	0	32	139	7	114	7.97e-51	162
Msa0263310	AT1G31320.1	66.667	114	38	0	28	141	8	121	1.76e-46	151
Msa0263310	AT1G16530.1	61.111	108	41	1	31	137	12	119	1.16e-44	146
Msa0263310	AT5G63090.4	58.182	110	46	0	32	141	10	119	4.90e-44	145
Msa0263310	AT5G63090.3	58.182	110	46	0	32	141	10	119	4.90e-44	145
Msa0263310	AT5G63090.2	58.182	110	46	0	32	141	10	119	4.90e-44	145
Msa0263310	AT5G63090.1	58.182	110	46	0	32	141	10	119	4.90e-44	145
Msa0263310	AT2G30340.2	50.820	122	60	0	23	144	43	164	5.74e-43	145

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Find 39 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTTGCAAGCAGCACA+AGG	0.592933	2_2:-62584537	None:intergenic
AAATTGTCCACTGATTGTTG+TGG	0.665010	2_2:-62587016	None:intergenic
AACATCTTCACAACCACCTA+TGG	0.461696	2_2:+62584494	Msa0263310:CDS
AATTTGGAAGGTTCAGTGGG+AGG	0.549947	2_2:-62584603	None:intergenic
ACAACTTGAGGAGCCATAGG+TGG	0.673868	2_2:-62584507	None:intergenic
ACACTAGCCAAAATTCATTG+TGG	0.631207	2_2:+62587098	Msa0263310:CDS
ACCAAATACACGATGAGCAG+TGG	0.596399	2_2:-62584628	None:intergenic
ACCACTGCTCATCGTGTATT+TGG	0.246441	2_2:+62584627	Msa0263310:CDS
ACGATGAGCAGTGGTAAATT+TGG	0.308489	2_2:-62584619	None:intergenic
AGAATAAGAGACCCTGTATA+TGG	0.385791	2_2:+62586839	Msa0263310:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATAGTTAGGTGAATTTGA+CGG	-	chr2_2:62584891-62584910	None:intergenic	30.0%
AATAGTCAACAAATGGTCTA+TGG	-	chr2_2:62585083-62585102	None:intergenic	30.0%
CTATATATGGTATGTTGATG+GGG	+	chr2_2:62585113-62585132	Msa0263310:intron	30.0%
ATGATGTACCTACATGTATT+TGG	-	chr2_2:62585700-62585719	None:intergenic	30.0%
GGTACATCATCAATAATATG+GGG	+	chr2_2:62585710-62585729	Msa0263310:intron	30.0%
GTACATCATCAATAATATGG+GGG	+	chr2_2:62585711-62585730	Msa0263310:intron	30.0%
GTGTCAATTCTATCGAATTT+GGG	-	chr2_2:62585862-62585881	None:intergenic	30.0%
TGTGTCAATTCTATCGAATT+TGG	-	chr2_2:62585863-62585882	None:intergenic	30.0%
CTTGTTAGAATTAATGCAAG+AGG	-	chr2_2:62586038-62586057	None:intergenic	30.0%
TTAAAGTAGCAACCTTATCT+TGG	+	chr2_2:62586233-62586252	Msa0263310:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	62584441	62587138	62584441	ID=Msa0263310;Name=Msa0263310
chr2_2	mRNA	62584441	62587138	62584441	ID=Msa0263310-mRNA-1;Parent=Msa0263310;Name=Msa0263310-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|2\|0\|198
chr2_2	exon	62584441	62584677	62584441	ID=Msa0263310-mRNA-1:exon:19318;Parent=Msa0263310-mRNA-1
chr2_2	exon	62586779	62587138	62586779	ID=Msa0263310-mRNA-1:exon:19319;Parent=Msa0263310-mRNA-1
chr2_2	CDS	62584441	62584677	62584441	ID=Msa0263310-mRNA-1:cds;Parent=Msa0263310-mRNA-1
chr2_2	CDS	62586779	62587138	62586779	ID=Msa0263310-mRNA-1:cds;Parent=Msa0263310-mRNA-1

Gene Sequence

>Msa0263310

ATGGAGAATGACACAAACACTCGAATTTCTTCTCTTCCATTTTCTCAATCTCCAACATCTTCACAACCACCTATGGCTCCTCAAGTTGTCATGAGTCCTTGTGCTGCTTGCAAGATTTTAAGAAGAAGATGTGCTGAGAAATGTGTTTTGGCACCTTATTTCCCTCCCACTGAACCTTCCAAATTTACCACTGCTCATCGTGTATTTGGTGCCAGCAACATCATCAAGTTCTTACAGGAACTTCCAGAGTCTCAAAGAGCTGATGCAGTTAGTAGCATGGTTTATGAGGCTAGTGCAAGAATAAGAGACCCTGTATATGGATGTGCAGGTGCAATTTGTCACCTCCAAAAGCAAGTCAATGAGCTTCAAGCACAACTAGCTAAGTCACAAGCTGAGCTTATTAACATGCAATTACAACAATCCAATCTCCTAGCTTTGATTTGCATGGAAATGAAAGAAACTCCAAATGAATCTCCACAACAATCAGTGGACAATTTCATTTCAAGTCCTGCCTACAGCAGTGATTATCAAAATAATCTCAACTTCTTTGACGACAACACTAGCCAAAATTCATTGTGGGAGCCTCTTTGGACATGA

Protein sequence

>Msa0263310

MENDTNTRISSLPFSQSPTSSQPPMAPQVVMSPCAACKILRRRCAEKCVLAPYFPPTEPSKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVNELQAQLAKSQAELINMQLQQSNLLALICMEMKETPNESPQQSVDNFISSPAYSSDYQNNLNFFDDNTSQNSLWEPLWT*