Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0263310 | XP_003597159.1 | 97.980 | 198 | 4 | 0 | 1 | 198 | 1 | 198 | 1.04e-141 | 403 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0263310 | sp|Q9SK08|LBD11_ARATH | 66.667 | 186 | 42 | 4 | 29 | 198 | 51 | 232 | 3.89e-79 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0263310 | G7IKN3 | 97.980 | 198 | 4 | 0 | 1 | 198 | 1 | 198 | 4.99e-142 | 403 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0263310 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0263310 | Msa0300880 | 0.973698 | 7.166072e-137 | -8.615850e-47 |
| Msa0263310 | Msa0338430 | 0.894456 | 2.424070e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0263310 | MtrunA17_Chr4g0030001 | 73.913 | 184 | 42 | 4 | 17 | 198 | 11 | 190 | 1.41e-95 | 276 |
| Msa0263310 | MtrunA17_Chr2g0326051 | 94.400 | 125 | 7 | 0 | 74 | 198 | 1 | 125 | 4.34e-84 | 244 |
| Msa0263310 | MtrunA17_Chr1g0200201 | 72.121 | 165 | 38 | 4 | 34 | 198 | 73 | 229 | 5.43e-78 | 233 |
| Msa0263310 | MtrunA17_Chr2g0311601 | 69.912 | 113 | 34 | 0 | 28 | 140 | 8 | 120 | 1.98e-57 | 178 |
| Msa0263310 | MtrunA17_Chr2g0326041 | 98.734 | 79 | 1 | 0 | 1 | 79 | 1 | 79 | 7.24e-53 | 164 |
| Msa0263310 | MtrunA17_Chr4g0043421 | 64.035 | 114 | 41 | 0 | 28 | 141 | 10 | 123 | 1.42e-52 | 166 |
| Msa0263310 | MtrunA17_Chr5g0437571 | 63.717 | 113 | 41 | 0 | 32 | 144 | 5 | 117 | 2.46e-51 | 163 |
| Msa0263310 | MtrunA17_Chr3g0114061 | 63.964 | 111 | 40 | 0 | 32 | 142 | 7 | 117 | 5.23e-51 | 162 |
| Msa0263310 | MtrunA17_Chr3g0106101 | 62.385 | 109 | 41 | 0 | 32 | 140 | 6 | 114 | 4.07e-49 | 157 |
| Msa0263310 | MtrunA17_Chr5g0438091 | 56.637 | 113 | 49 | 0 | 32 | 144 | 38 | 150 | 2.18e-44 | 146 |
| Msa0263310 | MtrunA17_Chr6g0449641 | 54.098 | 122 | 56 | 0 | 25 | 146 | 1 | 122 | 3.39e-44 | 144 |
| Msa0263310 | MtrunA17_Chr3g0117121 | 59.048 | 105 | 43 | 0 | 32 | 136 | 9 | 113 | 7.26e-43 | 142 |
| Msa0263310 | MtrunA17_Chr4g0058651 | 57.944 | 107 | 45 | 0 | 32 | 138 | 10 | 116 | 1.27e-42 | 141 |
| Msa0263310 | MtrunA17_Chr3g0129071 | 55.357 | 112 | 50 | 0 | 30 | 141 | 44 | 155 | 2.20e-42 | 142 |
| Msa0263310 | MtrunA17_Chr3g0115431 | 59.804 | 102 | 41 | 0 | 32 | 133 | 8 | 109 | 7.59e-42 | 140 |
| Msa0263310 | MtrunA17_Chr7g0227511 | 60.194 | 103 | 41 | 0 | 32 | 134 | 10 | 112 | 1.07e-41 | 138 |
| Msa0263310 | MtrunA17_Chr6g0449651 | 52.459 | 122 | 58 | 0 | 25 | 146 | 59 | 180 | 1.39e-41 | 139 |
| Msa0263310 | MtrunA17_Chr5g0432451 | 58.929 | 112 | 46 | 0 | 30 | 141 | 40 | 151 | 5.04e-40 | 136 |
| Msa0263310 | MtrunA17_Chr5g0402611 | 56.863 | 102 | 44 | 0 | 32 | 133 | 7 | 108 | 1.07e-38 | 135 |
| Msa0263310 | MtrunA17_Chr3g0097221 | 53.271 | 107 | 50 | 0 | 32 | 138 | 6 | 112 | 2.64e-37 | 130 |
| Msa0263310 | MtrunA17_Chr3g0113891 | 58.333 | 96 | 40 | 0 | 32 | 127 | 13 | 108 | 3.57e-36 | 125 |
| Msa0263310 | MtrunA17_Chr5g0437401 | 55.882 | 102 | 45 | 0 | 32 | 133 | 10 | 111 | 7.54e-36 | 124 |
| Msa0263310 | MtrunA17_Chr8g0353981 | 61.728 | 81 | 31 | 0 | 32 | 112 | 6 | 86 | 1.78e-34 | 122 |
| Msa0263310 | MtrunA17_Chr6g0460951 | 41.060 | 151 | 78 | 3 | 30 | 175 | 37 | 181 | 4.18e-34 | 120 |
| Msa0263310 | MtrunA17_Chr7g0225111 | 44.144 | 111 | 62 | 0 | 29 | 139 | 1 | 111 | 6.45e-34 | 117 |
| Msa0263310 | MtrunA17_Chr7g0260971 | 53.398 | 103 | 47 | 1 | 32 | 133 | 13 | 115 | 2.00e-33 | 119 |
| Msa0263310 | MtrunA17_Chr8g0351721 | 51.402 | 107 | 51 | 1 | 32 | 137 | 17 | 123 | 8.73e-33 | 117 |
| Msa0263310 | MtrunA17_Chr1g0184281 | 50.909 | 110 | 53 | 1 | 26 | 134 | 8 | 117 | 2.26e-32 | 115 |
| Msa0263310 | MtrunA17_Chr7g0245871 | 50.000 | 102 | 50 | 1 | 33 | 133 | 27 | 128 | 5.04e-32 | 115 |
| Msa0263310 | MtrunA17_Chr8g0374601 | 49.038 | 104 | 53 | 0 | 30 | 133 | 23 | 126 | 5.59e-32 | 116 |
| Msa0263310 | MtrunA17_Chr8g0374591 | 44.262 | 122 | 65 | 1 | 30 | 148 | 5 | 126 | 6.95e-32 | 112 |
| Msa0263310 | MtrunA17_Chr8g0351701 | 48.148 | 108 | 55 | 1 | 32 | 138 | 22 | 129 | 1.61e-31 | 114 |
| Msa0263310 | MtrunA17_Chr5g0444351 | 38.298 | 141 | 77 | 2 | 29 | 159 | 1 | 141 | 1.73e-31 | 111 |
| Msa0263310 | MtrunA17_Chr1g0184271 | 51.961 | 102 | 46 | 2 | 33 | 131 | 12 | 113 | 5.71e-30 | 110 |
| Msa0263310 | MtrunA17_Chr7g0261031 | 51.546 | 97 | 46 | 1 | 32 | 127 | 7 | 103 | 9.32e-30 | 109 |
| Msa0263310 | MtrunA17_Chr5g0435641 | 48.958 | 96 | 48 | 1 | 32 | 126 | 6 | 101 | 4.61e-28 | 104 |
| Msa0263310 | MtrunA17_Chr8g0374581 | 47.170 | 106 | 55 | 1 | 30 | 134 | 5 | 110 | 2.37e-27 | 103 |
| Msa0263310 | MtrunA17_Chr6g0452691 | 33.133 | 166 | 94 | 4 | 34 | 194 | 10 | 163 | 6.79e-27 | 101 |
| Msa0263310 | MtrunA17_Chr6g0452661 | 42.857 | 119 | 63 | 2 | 34 | 147 | 10 | 128 | 2.40e-26 | 101 |
| Msa0263310 | MtrunA17_Chr6g0460941 | 45.455 | 88 | 47 | 1 | 33 | 119 | 7 | 94 | 1.79e-25 | 94.7 |
| Msa0263310 | MtrunA17_Chr4g0059901 | 45.161 | 93 | 51 | 0 | 34 | 126 | 11 | 103 | 2.88e-25 | 99.0 |
| Msa0263310 | MtrunA17_Chr7g0245861 | 39.496 | 119 | 69 | 2 | 32 | 147 | 11 | 129 | 5.25e-24 | 92.4 |
| Msa0263310 | MtrunA17_Chr4g0040831 | 37.838 | 111 | 66 | 1 | 30 | 137 | 12 | 122 | 4.13e-23 | 91.7 |
| Msa0263310 | MtrunA17_Chr6g0452671 | 48.101 | 79 | 41 | 0 | 34 | 112 | 12 | 90 | 1.32e-22 | 90.5 |
| Msa0263310 | MtrunA17_Chr4g0055441 | 44.211 | 95 | 48 | 2 | 34 | 123 | 3 | 97 | 5.75e-22 | 87.4 |
| Msa0263310 | MtrunA17_Chr2g0330201 | 38.000 | 100 | 62 | 0 | 34 | 133 | 20 | 119 | 3.24e-21 | 88.6 |
| Msa0263310 | MtrunA17_Chr8g0342351 | 39.048 | 105 | 59 | 1 | 34 | 138 | 13 | 112 | 2.39e-20 | 85.9 |
| Msa0263310 | MtrunA17_Chr5g0439111 | 46.250 | 80 | 42 | 1 | 34 | 112 | 10 | 89 | 3.59e-18 | 79.3 |
| Msa0263310 | MtrunA17_Chr4g0046201 | 32.955 | 88 | 59 | 0 | 32 | 119 | 5 | 92 | 2.91e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0263310 | AT2G28500.1 | 66.667 | 186 | 42 | 4 | 29 | 198 | 51 | 232 | 3.96e-80 | 238 |
| Msa0263310 | AT1G07900.1 | 61.194 | 201 | 63 | 3 | 1 | 198 | 1 | 189 | 4.55e-79 | 234 |
| Msa0263310 | AT2G30130.1 | 65.741 | 108 | 37 | 0 | 32 | 139 | 7 | 114 | 7.97e-51 | 162 |
| Msa0263310 | AT1G31320.1 | 66.667 | 114 | 38 | 0 | 28 | 141 | 8 | 121 | 1.76e-46 | 151 |
| Msa0263310 | AT1G16530.1 | 61.111 | 108 | 41 | 1 | 31 | 137 | 12 | 119 | 1.16e-44 | 146 |
| Msa0263310 | AT5G63090.4 | 58.182 | 110 | 46 | 0 | 32 | 141 | 10 | 119 | 4.90e-44 | 145 |
| Msa0263310 | AT5G63090.3 | 58.182 | 110 | 46 | 0 | 32 | 141 | 10 | 119 | 4.90e-44 | 145 |
| Msa0263310 | AT5G63090.2 | 58.182 | 110 | 46 | 0 | 32 | 141 | 10 | 119 | 4.90e-44 | 145 |
| Msa0263310 | AT5G63090.1 | 58.182 | 110 | 46 | 0 | 32 | 141 | 10 | 119 | 4.90e-44 | 145 |
| Msa0263310 | AT2G30340.2 | 50.820 | 122 | 60 | 0 | 23 | 144 | 43 | 164 | 5.74e-43 | 145 |
| Msa0263310 | AT2G30340.1 | 50.820 | 122 | 60 | 0 | 23 | 144 | 42 | 163 | 6.37e-43 | 145 |
| Msa0263310 | AT3G27650.1 | 60.194 | 103 | 41 | 0 | 32 | 134 | 38 | 140 | 2.42e-42 | 140 |
| Msa0263310 | AT2G23660.2 | 56.731 | 104 | 45 | 0 | 32 | 135 | 4 | 107 | 3.01e-41 | 142 |
| Msa0263310 | AT2G23660.3 | 56.731 | 104 | 45 | 0 | 32 | 135 | 4 | 107 | 3.01e-41 | 142 |
| Msa0263310 | AT2G23660.1 | 56.731 | 104 | 45 | 0 | 32 | 135 | 4 | 107 | 3.01e-41 | 142 |
| Msa0263310 | AT2G40470.2 | 57.265 | 117 | 49 | 1 | 31 | 147 | 18 | 133 | 7.78e-39 | 132 |
| Msa0263310 | AT3G26660.1 | 52.778 | 108 | 51 | 0 | 34 | 141 | 6 | 113 | 1.40e-38 | 129 |
| Msa0263310 | AT5G66870.1 | 56.863 | 102 | 44 | 0 | 32 | 133 | 6 | 107 | 1.40e-38 | 135 |
| Msa0263310 | AT2G40470.1 | 57.265 | 117 | 49 | 1 | 31 | 147 | 43 | 158 | 1.41e-38 | 132 |
| Msa0263310 | AT3G26620.1 | 52.778 | 108 | 51 | 0 | 34 | 141 | 6 | 113 | 1.68e-38 | 129 |
| Msa0263310 | AT1G65620.1 | 56.637 | 113 | 49 | 0 | 25 | 137 | 1 | 113 | 3.83e-36 | 125 |
| Msa0263310 | AT1G65620.4 | 56.637 | 113 | 49 | 0 | 25 | 137 | 1 | 113 | 3.83e-36 | 125 |
| Msa0263310 | AT1G65620.3 | 56.637 | 113 | 49 | 0 | 25 | 137 | 1 | 113 | 3.83e-36 | 125 |
| Msa0263310 | AT1G65620.5 | 56.637 | 113 | 49 | 0 | 25 | 137 | 1 | 113 | 3.83e-36 | 125 |
| Msa0263310 | AT1G65620.2 | 56.637 | 113 | 49 | 0 | 25 | 137 | 1 | 113 | 3.83e-36 | 125 |
| Msa0263310 | AT4G00210.1 | 56.075 | 107 | 46 | 1 | 32 | 137 | 10 | 116 | 4.36e-36 | 126 |
| Msa0263310 | AT3G11090.1 | 52.427 | 103 | 49 | 0 | 32 | 134 | 10 | 112 | 1.90e-35 | 122 |
| Msa0263310 | AT3G03760.1 | 48.214 | 112 | 57 | 1 | 32 | 142 | 50 | 161 | 6.14e-34 | 122 |
| Msa0263310 | AT3G58190.1 | 42.208 | 154 | 74 | 5 | 33 | 184 | 11 | 151 | 1.12e-31 | 114 |
| Msa0263310 | AT4G00220.1 | 49.038 | 104 | 52 | 1 | 36 | 138 | 20 | 123 | 6.60e-31 | 113 |
| Msa0263310 | AT2G31310.1 | 52.577 | 97 | 45 | 1 | 32 | 127 | 6 | 102 | 9.12e-31 | 111 |
| Msa0263310 | AT2G45410.1 | 53.398 | 103 | 47 | 1 | 36 | 137 | 19 | 121 | 1.05e-30 | 111 |
| Msa0263310 | AT2G42430.1 | 47.664 | 107 | 55 | 1 | 32 | 137 | 14 | 120 | 2.05e-30 | 112 |
| Msa0263310 | AT2G45420.1 | 50.000 | 104 | 51 | 1 | 36 | 138 | 40 | 143 | 3.63e-30 | 112 |
| Msa0263310 | AT2G42440.1 | 49.550 | 111 | 50 | 2 | 32 | 141 | 6 | 111 | 4.49e-29 | 108 |
| Msa0263310 | AT5G06080.1 | 43.750 | 112 | 62 | 1 | 32 | 142 | 6 | 117 | 2.27e-27 | 102 |
| Msa0263310 | AT3G50510.1 | 44.231 | 104 | 58 | 0 | 30 | 133 | 9 | 112 | 5.06e-27 | 102 |
| Msa0263310 | AT3G50510.2 | 44.231 | 104 | 58 | 0 | 30 | 133 | 9 | 112 | 5.06e-27 | 102 |
| Msa0263310 | AT3G47870.1 | 41.667 | 108 | 58 | 1 | 32 | 139 | 35 | 137 | 5.21e-25 | 99.8 |
| Msa0263310 | AT5G35900.1 | 42.000 | 100 | 58 | 0 | 34 | 133 | 6 | 105 | 6.16e-25 | 97.1 |
| Msa0263310 | AT1G72980.1 | 44.211 | 95 | 53 | 0 | 32 | 126 | 12 | 106 | 1.67e-24 | 95.9 |
| Msa0263310 | AT3G13850.1 | 40.000 | 105 | 58 | 1 | 34 | 138 | 37 | 136 | 3.29e-22 | 91.3 |
| Msa0263310 | AT1G06280.1 | 40.260 | 77 | 46 | 0 | 34 | 110 | 25 | 101 | 4.70e-17 | 76.3 |
| Msa0263310 | AT2G19820.1 | 38.043 | 92 | 56 | 1 | 29 | 119 | 8 | 99 | 1.77e-16 | 72.8 |
| Msa0263310 | AT4G22700.1 | 38.235 | 102 | 59 | 3 | 34 | 133 | 6 | 105 | 1.31e-15 | 72.0 |
| Msa0263310 | AT1G36000.1 | 32.353 | 102 | 69 | 0 | 25 | 126 | 1 | 102 | 2.06e-12 | 62.0 |
| Msa0263310 | AT5G15060.1 | 41.892 | 74 | 39 | 2 | 34 | 104 | 18 | 90 | 2.56e-11 | 59.3 |
Find 39 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGCTCATTGACTTGCTTT+TGG | 0.237207 | 2_2:-62586886 | None:intergenic |
| ACCACTGCTCATCGTGTATT+TGG | 0.246441 | 2_2:+62584627 | Msa0263310:CDS |
| GAGGCTCCCACAATGAATTT+TGG | 0.257844 | 2_2:-62587105 | None:intergenic |
| ATTCATTGTGGGAGCCTCTT+TGG | 0.264450 | 2_2:+62587110 | Msa0263310:CDS |
| ACGATGAGCAGTGGTAAATT+TGG | 0.308489 | 2_2:-62584619 | None:intergenic |
| GGTTCAGTGGGAGGGAAATA+AGG | 0.330275 | 2_2:-62584594 | None:intergenic |
| CAACATCATCAAGTTCTTAC+AGG | 0.365225 | 2_2:+62584656 | Msa0263310:CDS |
| GATGTTGGAGATTGAGAAAA+TGG | 0.370101 | 2_2:-62584477 | None:intergenic |
| AGAATAAGAGACCCTGTATA+TGG | 0.385791 | 2_2:+62586839 | Msa0263310:CDS |
| GATTGTTGTGGAGATTCATT+TGG | 0.432048 | 2_2:-62587004 | None:intergenic |
| GGTAAATTTGGAAGGTTCAG+TGG | 0.438516 | 2_2:-62584607 | None:intergenic |
| ATGTGCTGAGAAATGTGTTT+TGG | 0.444237 | 2_2:+62584569 | Msa0263310:CDS |
| GCACCTGCACATCCATATAC+AGG | 0.450577 | 2_2:-62586851 | None:intergenic |
| AGTTAGTAGCATGGTTTATG+AGG | 0.452667 | 2_2:+62586808 | Msa0263310:CDS |
| GCAAATCAAAGCTAGGAGAT+TGG | 0.453679 | 2_2:-62586963 | None:intergenic |
| AACATCTTCACAACCACCTA+TGG | 0.461696 | 2_2:+62584494 | Msa0263310:CDS |
| TAAGAACTTGATGATGTTGC+TGG | 0.462784 | 2_2:-62584652 | None:intergenic |
| TCTCCTAGCTTTGATTTGCA+TGG | 0.470568 | 2_2:+62586967 | Msa0263310:CDS |
| GCATCAGCTCTTTGAGACTC+TGG | 0.485917 | 2_2:-62586785 | None:intergenic |
| ATTTGGAAGGTTCAGTGGGA+GGG | 0.499239 | 2_2:-62584602 | None:intergenic |
| TGATAATCACTGCTGTAGGC+AGG | 0.499915 | 2_2:-62587049 | None:intergenic |
| CACTAGCCAAAATTCATTGT+GGG | 0.528888 | 2_2:+62587099 | Msa0263310:CDS |
| TTTCCATGCAAATCAAAGCT+AGG | 0.531294 | 2_2:-62586970 | None:intergenic |
| AATTTGGAAGGTTCAGTGGG+AGG | 0.549947 | 2_2:-62584603 | None:intergenic |
| GCTCAACTTCATGTCCAAAG+AGG | 0.560755 | 2_2:-62587124 | None:intergenic |
| GTAAATTTGGAAGGTTCAGT+GGG | 0.562077 | 2_2:-62584606 | None:intergenic |
| GACCCTGTATATGGATGTGC+AGG | 0.562336 | 2_2:+62586848 | Msa0263310:CDS |
| AGCTGATGCAGTTAGTAGCA+TGG | 0.566903 | 2_2:+62586799 | Msa0263310:CDS |
| TGAGCAGTGGTAAATTTGGA+AGG | 0.588814 | 2_2:-62584615 | None:intergenic |
| TGAATCTCCACAACAATCAG+TGG | 0.592712 | 2_2:+62587009 | Msa0263310:CDS |
| AAAATCTTGCAAGCAGCACA+AGG | 0.592933 | 2_2:-62584537 | None:intergenic |
| CAAGGACTCATGACAACTTG+AGG | 0.595290 | 2_2:-62584519 | None:intergenic |
| ATGACAACTTGAGGAGCCAT+AGG | 0.596176 | 2_2:-62584510 | None:intergenic |
| ACCAAATACACGATGAGCAG+TGG | 0.596399 | 2_2:-62584628 | None:intergenic |
| CACCTGCACATCCATATACA+GGG | 0.624861 | 2_2:-62586850 | None:intergenic |
| ACACTAGCCAAAATTCATTG+TGG | 0.631207 | 2_2:+62587098 | Msa0263310:CDS |
| ATAGGTGGTTGTGAAGATGT+TGG | 0.643738 | 2_2:-62584492 | None:intergenic |
| AAATTGTCCACTGATTGTTG+TGG | 0.665010 | 2_2:-62587016 | None:intergenic |
| ACAACTTGAGGAGCCATAGG+TGG | 0.673868 | 2_2:-62584507 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTATTTAAAACAAAAAAAT+TGG | - | chr2_2:62586535-62586554 | None:intergenic | 10.0% |
| !!! | AAAAATTCACAAGATTTTAT+AGG | - | chr2_2:62584732-62584751 | None:intergenic | 15.0% |
| !!! | CATTTTTTATAGATCAAAAT+AGG | - | chr2_2:62584915-62584934 | None:intergenic | 15.0% |
| !!! | ATTGTATGATTTTCTATATA+TGG | + | chr2_2:62585100-62585119 | Msa0263310:intron | 15.0% |
| !!! | AAAAGGTTTTTTTTTTTTGA+AGG | + | chr2_2:62585640-62585659 | Msa0263310:intron | 15.0% |
| !!! | CTATGAAATTAAATTTTCAA+AGG | - | chr2_2:62586116-62586135 | None:intergenic | 15.0% |
| !! | AATTTCATAGATAATATTTC+CGG | + | chr2_2:62586126-62586145 | Msa0263310:intron | 15.0% |
| !!! | TGTTTTAAATAACTTATTCA+TGG | + | chr2_2:62586542-62586561 | Msa0263310:intron | 15.0% |
| !! | ACAATAGTTAAGTAAAATTT+AGG | + | chr2_2:62586593-62586612 | Msa0263310:intron | 15.0% |
| !!! | TATTTTTGTCAAAGTTAATG+TGG | + | chr2_2:62584854-62584873 | Msa0263310:intron | 20.0% |
| !!! | GTCTTTTTTTTGAAGAAATT+AGG | - | chr2_2:62585165-62585184 | None:intergenic | 20.0% |
| !! | GGTATCATTCAAAATTAATT+AGG | - | chr2_2:62585194-62585213 | None:intergenic | 20.0% |
| !!! | TAAAGTGTTACTTTAATAGA+GGG | - | chr2_2:62585290-62585309 | None:intergenic | 20.0% |
| !!! | CAAAATTACACATTTTCAAA+TGG | - | chr2_2:62585346-62585365 | None:intergenic | 20.0% |
| !! | TGTATATTAGTAGAGAAATA+TGG | - | chr2_2:62585385-62585404 | None:intergenic | 20.0% |
| !! | TAATTTCTACTAGATATTAG+AGG | - | chr2_2:62585949-62585968 | None:intergenic | 20.0% |
| !!! | ATGTGAAGTTTTATTTACAA+CGG | - | chr2_2:62586155-62586174 | None:intergenic | 20.0% |
| !!! | GTAGTTTTACTTTACAATAC+AGG | + | chr2_2:62584678-62584697 | Msa0263310:intron | 25.0% |
| ! | ATCAAAATAGGTGAATAGTT+AGG | - | chr2_2:62584903-62584922 | None:intergenic | 25.0% |
| ! | ATCATACAATAGTCAACAAA+TGG | - | chr2_2:62585090-62585109 | None:intergenic | 25.0% |
| ! | TTCTATATATGGTATGTTGA+TGG | + | chr2_2:62585111-62585130 | Msa0263310:intron | 25.0% |
| ! | TCTATATATGGTATGTTGAT+GGG | + | chr2_2:62585112-62585131 | Msa0263310:intron | 25.0% |
| !!! | GTAAAGTGTTACTTTAATAG+AGG | - | chr2_2:62585291-62585310 | None:intergenic | 25.0% |
| ! | TTAAGCTCAAAATTATGCAT+TGG | + | chr2_2:62585506-62585525 | Msa0263310:intron | 25.0% |
| !! | AAAAAAAAAACCTTTTCCGA+TGG | - | chr2_2:62585636-62585655 | None:intergenic | 25.0% |
| ! | AAAATATGCCAAATACATGT+AGG | + | chr2_2:62585689-62585708 | Msa0263310:intron | 25.0% |
| ! | TAGGTACATCATCAATAATA+TGG | + | chr2_2:62585708-62585727 | Msa0263310:intron | 25.0% |
| ! | AGGTACATCATCAATAATAT+GGG | + | chr2_2:62585709-62585728 | Msa0263310:intron | 25.0% |
| ! | ACACGGTATATGTTAAATTT+AGG | - | chr2_2:62586009-62586028 | None:intergenic | 25.0% |
| ! | TAAATTTAACATATACCGTG+TGG | + | chr2_2:62586008-62586027 | Msa0263310:intron | 25.0% |
| ! | ATATTGTCTTGCGTATTAAA+TGG | - | chr2_2:62586065-62586084 | None:intergenic | 25.0% |
| ! | AATGCATAATTTCCAAGATA+AGG | - | chr2_2:62586248-62586267 | None:intergenic | 25.0% |
| ! | TACTTATAATAGTGACTGAA+TGG | + | chr2_2:62586453-62586472 | Msa0263310:intron | 25.0% |
| GAATAGTTAGGTGAATTTGA+CGG | - | chr2_2:62584891-62584910 | None:intergenic | 30.0% | |
| AATAGTCAACAAATGGTCTA+TGG | - | chr2_2:62585083-62585102 | None:intergenic | 30.0% | |
| CTATATATGGTATGTTGATG+GGG | + | chr2_2:62585113-62585132 | Msa0263310:intron | 30.0% | |
| !!! | CTTTTGTGAGACTAGTTTAA+GGG | - | chr2_2:62585215-62585234 | None:intergenic | 30.0% |
| !!! | TCTTTTGTGAGACTAGTTTA+AGG | - | chr2_2:62585216-62585235 | None:intergenic | 30.0% |
| !!! | TCTTTTAAGACTTTCTCCAT+CGG | + | chr2_2:62585617-62585636 | Msa0263310:intron | 30.0% |
| ATGATGTACCTACATGTATT+TGG | - | chr2_2:62585700-62585719 | None:intergenic | 30.0% | |
| GGTACATCATCAATAATATG+GGG | + | chr2_2:62585710-62585729 | Msa0263310:intron | 30.0% | |
| GTACATCATCAATAATATGG+GGG | + | chr2_2:62585711-62585730 | Msa0263310:intron | 30.0% | |
| GTGTCAATTCTATCGAATTT+GGG | - | chr2_2:62585862-62585881 | None:intergenic | 30.0% | |
| TGTGTCAATTCTATCGAATT+TGG | - | chr2_2:62585863-62585882 | None:intergenic | 30.0% | |
| !!! | TCTTTTAAGACTTTCTCCAT+CGG | + | chr2_2:62585617-62585636 | Msa0263310:intron | 30.0% |
| ! | AATAAAACAACCTTTTCCGA+TGG | - | chr2_2:62585911-62585930 | None:intergenic | 30.0% |
| CTTGTTAGAATTAATGCAAG+AGG | - | chr2_2:62586038-62586057 | None:intergenic | 30.0% | |
| TTAAAGTAGCAACCTTATCT+TGG | + | chr2_2:62586233-62586252 | Msa0263310:intron | 30.0% | |
| TATGTTAACAAGTGTCCTTA+AGG | - | chr2_2:62586351-62586370 | None:intergenic | 30.0% | |
| CTATATAACTTTGACTCAAG+TGG | - | chr2_2:62586674-62586693 | None:intergenic | 30.0% | |
| !!! | TTCTCCTCCATTTTTTTTTC+AGG | + | chr2_2:62586757-62586776 | Msa0263310:intron | 30.0% |
| AGTTCCTGAAAAAAAAATGG+AGG | - | chr2_2:62586764-62586783 | None:intergenic | 30.0% | |
| GGAAGTTCCTGAAAAAAAAA+TGG | - | chr2_2:62586767-62586786 | None:intergenic | 30.0% | |
| !! | ATTTTGATAATCACTGCTGT+AGG | - | chr2_2:62587056-62587075 | None:intergenic | 30.0% |
| GATGTTGGAGATTGAGAAAA+TGG | - | chr2_2:62584480-62584499 | None:intergenic | 35.0% | |
| ! | ATGTGCTGAGAAATGTGTTT+TGG | + | chr2_2:62584569-62584588 | Msa0263310:CDS | 35.0% |
| GTAAATTTGGAAGGTTCAGT+GGG | - | chr2_2:62584609-62584628 | None:intergenic | 35.0% | |
| !! | TAAGAACTTGATGATGTTGC+TGG | - | chr2_2:62584655-62584674 | None:intergenic | 35.0% |
| CAACATCATCAAGTTCTTAC+AGG | + | chr2_2:62584656-62584675 | Msa0263310:CDS | 35.0% | |
| ! | AAGATTTTATAGGCCTGTGT+AGG | - | chr2_2:62584722-62584741 | None:intergenic | 35.0% |
| TCGTCGTCATTCTAAATTCA+CGG | - | chr2_2:62584778-62584797 | None:intergenic | 35.0% | |
| TTAGGTGAATTTGACGGAAT+CGG | - | chr2_2:62584885-62584904 | None:intergenic | 35.0% | |
| TTTAGATCATGTTCCATACG+TGG | - | chr2_2:62584971-62584990 | None:intergenic | 35.0% | |
| ! | ATGCATTGGCATGTGTAATA+AGG | + | chr2_2:62585520-62585539 | Msa0263310:intron | 35.0% |
| CTGTGTCAAGTATTAAGAGA+CGG | + | chr2_2:62585547-62585566 | Msa0263310:intron | 35.0% | |
| ACTCTGATGTTGAGTTCAAT+AGG | - | chr2_2:62585793-62585812 | None:intergenic | 35.0% | |
| ATTTAACATATACCGTGTGG+TGG | + | chr2_2:62586011-62586030 | Msa0263310:intron | 35.0% | |
| TTTAACATATACCGTGTGGT+GGG | + | chr2_2:62586012-62586031 | Msa0263310:intron | 35.0% | |
| !!! | GTTTTATTTACAACGGTGAC+CGG | - | chr2_2:62586148-62586167 | None:intergenic | 35.0% |
| TTATTCATGGTGAAAGACCA+TGG | + | chr2_2:62586555-62586574 | Msa0263310:intron | 35.0% | |
| GACCATGGTAATTCAAAGTT+CGG | + | chr2_2:62586570-62586589 | Msa0263310:intron | 35.0% | |
| AGTTAGTAGCATGGTTTATG+AGG | + | chr2_2:62586808-62586827 | Msa0263310:CDS | 35.0% | |
| AGAATAAGAGACCCTGTATA+TGG | + | chr2_2:62586839-62586858 | Msa0263310:CDS | 35.0% | |
| TTTCCATGCAAATCAAAGCT+AGG | - | chr2_2:62586973-62586992 | None:intergenic | 35.0% | |
| GATTGTTGTGGAGATTCATT+TGG | - | chr2_2:62587007-62587026 | None:intergenic | 35.0% | |
| ! | AAATTGTCCACTGATTGTTG+TGG | - | chr2_2:62587019-62587038 | None:intergenic | 35.0% |
| ACACTAGCCAAAATTCATTG+TGG | + | chr2_2:62587098-62587117 | Msa0263310:CDS | 35.0% | |
| CACTAGCCAAAATTCATTGT+GGG | + | chr2_2:62587099-62587118 | Msa0263310:CDS | 35.0% | |
| ATAGGTGGTTGTGAAGATGT+TGG | - | chr2_2:62584495-62584514 | None:intergenic | 40.0% | |
| AACATCTTCACAACCACCTA+TGG | + | chr2_2:62584494-62584513 | Msa0263310:CDS | 40.0% | |
| AAAATCTTGCAAGCAGCACA+AGG | - | chr2_2:62584540-62584559 | None:intergenic | 40.0% | |
| GGTAAATTTGGAAGGTTCAG+TGG | - | chr2_2:62584610-62584629 | None:intergenic | 40.0% | |
| TGAGCAGTGGTAAATTTGGA+AGG | - | chr2_2:62584618-62584637 | None:intergenic | 40.0% | |
| ACGATGAGCAGTGGTAAATT+TGG | - | chr2_2:62584622-62584641 | None:intergenic | 40.0% | |
| CGTCGTCATTCTAAATTCAC+GGG | - | chr2_2:62584777-62584796 | None:intergenic | 40.0% | |
| TTTCACCATTTGACCACGTA+TGG | + | chr2_2:62584955-62584974 | Msa0263310:intron | 40.0% | |
| ATGTTCCATACGTGGTCAAA+TGG | - | chr2_2:62584963-62584982 | None:intergenic | 40.0% | |
| ATCATCTATTGCGAGACTGA+GGG | - | chr2_2:62585323-62585342 | None:intergenic | 40.0% | |
| TGTCAAGTATTAAGAGACGG+AGG | + | chr2_2:62585550-62585569 | Msa0263310:intron | 40.0% | |
| GTCAAGTATTAAGAGACGGA+GGG | + | chr2_2:62585551-62585570 | Msa0263310:intron | 40.0% | |
| AAGACTTTCTCCATCGGAAA+AGG | + | chr2_2:62585623-62585642 | Msa0263310:intron | 40.0% | |
| TCATCAATAATATGGGGGCT+AGG | + | chr2_2:62585716-62585735 | Msa0263310:intron | 40.0% | |
| CAATAGGAGGCAAGCAAATA+GGG | - | chr2_2:62585777-62585796 | None:intergenic | 40.0% | |
| TCAATAGGAGGCAAGCAAAT+AGG | - | chr2_2:62585778-62585797 | None:intergenic | 40.0% | |
| CTGATGTTGAGTTCAATAGG+AGG | - | chr2_2:62585790-62585809 | None:intergenic | 40.0% | |
| AAGACTTTCTCCATCGGAAA+AGG | + | chr2_2:62585623-62585642 | Msa0263310:intron | 40.0% | |
| AATCCTTAACGAGTGCCTTA+AGG | + | chr2_2:62586333-62586352 | Msa0263310:intron | 40.0% | |
| GTCCGAACTTTGAATTACCA+TGG | - | chr2_2:62586575-62586594 | None:intergenic | 40.0% | |
| GCTTGTCTTGAACTCTCAAT+CGG | - | chr2_2:62586702-62586721 | None:intergenic | 40.0% | |
| !!! | GAAGCTCATTGACTTGCTTT+TGG | - | chr2_2:62586889-62586908 | None:intergenic | 40.0% |
| GCAAATCAAAGCTAGGAGAT+TGG | - | chr2_2:62586966-62586985 | None:intergenic | 40.0% | |
| !! | TCTCCTAGCTTTGATTTGCA+TGG | + | chr2_2:62586967-62586986 | Msa0263310:CDS | 40.0% |
| TGAATCTCCACAACAATCAG+TGG | + | chr2_2:62587009-62587028 | Msa0263310:CDS | 40.0% | |
| ATGACAACTTGAGGAGCCAT+AGG | - | chr2_2:62584513-62584532 | None:intergenic | 45.0% | |
| CAAGGACTCATGACAACTTG+AGG | - | chr2_2:62584522-62584541 | None:intergenic | 45.0% | |
| ATTTGGAAGGTTCAGTGGGA+GGG | - | chr2_2:62584605-62584624 | None:intergenic | 45.0% | |
| AATTTGGAAGGTTCAGTGGG+AGG | - | chr2_2:62584606-62584625 | None:intergenic | 45.0% | |
| ACCACTGCTCATCGTGTATT+TGG | + | chr2_2:62584627-62584646 | Msa0263310:CDS | 45.0% | |
| ACCAAATACACGATGAGCAG+TGG | - | chr2_2:62584631-62584650 | None:intergenic | 45.0% | |
| TGTAGGTACTTAGGCTAGTG+TGG | - | chr2_2:62584705-62584724 | None:intergenic | 45.0% | |
| ! | ACTAGCCTAAGTACCTACAC+AGG | + | chr2_2:62584706-62584725 | Msa0263310:intron | 45.0% |
| ATAGGCCTGTGTAGGTACTT+AGG | - | chr2_2:62584714-62584733 | None:intergenic | 45.0% | |
| GATCATCTATTGCGAGACTG+AGG | - | chr2_2:62585324-62585343 | None:intergenic | 45.0% | |
| ! | TGTCCTTAAGGCACTCGTTA+AGG | - | chr2_2:62586339-62586358 | None:intergenic | 45.0% |
| AGCTGATGCAGTTAGTAGCA+TGG | + | chr2_2:62586799-62586818 | Msa0263310:CDS | 45.0% | |
| CACCTGCACATCCATATACA+GGG | - | chr2_2:62586853-62586872 | None:intergenic | 45.0% | |
| !!! | GCTCATTGACTTGCTTTTGG+AGG | - | chr2_2:62586886-62586905 | None:intergenic | 45.0% |
| TGATAATCACTGCTGTAGGC+AGG | - | chr2_2:62587052-62587071 | None:intergenic | 45.0% | |
| ! | GAGGCTCCCACAATGAATTT+TGG | - | chr2_2:62587108-62587127 | None:intergenic | 45.0% |
| ATTCATTGTGGGAGCCTCTT+TGG | + | chr2_2:62587110-62587129 | Msa0263310:CDS | 45.0% | |
| ACAACTTGAGGAGCCATAGG+TGG | - | chr2_2:62584510-62584529 | None:intergenic | 50.0% | |
| GGTTCAGTGGGAGGGAAATA+AGG | - | chr2_2:62584597-62584616 | None:intergenic | 50.0% | |
| TATGGGGGCTAGGATTAGAC+AGG | + | chr2_2:62585726-62585745 | Msa0263310:intron | 50.0% | |
| ATGGGGGCTAGGATTAGACA+GGG | + | chr2_2:62585727-62585746 | Msa0263310:intron | 50.0% | |
| !! | GCATCAGCTCTTTGAGACTC+TGG | - | chr2_2:62586788-62586807 | None:intergenic | 50.0% |
| GACCCTGTATATGGATGTGC+AGG | + | chr2_2:62586848-62586867 | Msa0263310:CDS | 50.0% | |
| GCACCTGCACATCCATATAC+AGG | - | chr2_2:62586854-62586873 | None:intergenic | 50.0% | |
| GGTAGCTCACGAGTTAGCTC+AGG | - | chr2_2:62585756-62585775 | None:intergenic | 55.0% | |
| AATGCAAGAGGCCCACCACA+CGG | - | chr2_2:62586026-62586045 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 62584441 | 62587138 | 62584441 | ID=Msa0263310;Name=Msa0263310 |
| chr2_2 | mRNA | 62584441 | 62587138 | 62584441 | ID=Msa0263310-mRNA-1;Parent=Msa0263310;Name=Msa0263310-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|198 |
| chr2_2 | exon | 62584441 | 62584677 | 62584441 | ID=Msa0263310-mRNA-1:exon:19318;Parent=Msa0263310-mRNA-1 |
| chr2_2 | exon | 62586779 | 62587138 | 62586779 | ID=Msa0263310-mRNA-1:exon:19319;Parent=Msa0263310-mRNA-1 |
| chr2_2 | CDS | 62584441 | 62584677 | 62584441 | ID=Msa0263310-mRNA-1:cds;Parent=Msa0263310-mRNA-1 |
| chr2_2 | CDS | 62586779 | 62587138 | 62586779 | ID=Msa0263310-mRNA-1:cds;Parent=Msa0263310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
