Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338430 | XP_003597159.1 | 98.485 | 198 | 3 | 0 | 1 | 198 | 1 | 198 | 3.41e-142 | 404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338430 | sp|Q9SK08|LBD11_ARATH | 67.204 | 186 | 41 | 4 | 29 | 198 | 51 | 232 | 1.05e-79 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0338430 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0263310 | Msa0338430 | 0.894456 | 2.424070e-75 | -8.615850e-47 |
| Msa0300880 | Msa0338430 | 0.886573 | 3.041928e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338430 | MtrunA17_Chr4g0030001 | 73.370 | 184 | 43 | 4 | 17 | 198 | 11 | 190 | 4.86e-95 | 274 |
| Msa0338430 | MtrunA17_Chr2g0326051 | 95.200 | 125 | 6 | 0 | 74 | 198 | 1 | 125 | 1.40e-84 | 246 |
| Msa0338430 | MtrunA17_Chr1g0200201 | 72.727 | 165 | 37 | 4 | 34 | 198 | 73 | 229 | 1.76e-78 | 234 |
| Msa0338430 | MtrunA17_Chr2g0311601 | 69.912 | 113 | 34 | 0 | 28 | 140 | 8 | 120 | 1.85e-57 | 178 |
| Msa0338430 | MtrunA17_Chr2g0326041 | 98.734 | 79 | 1 | 0 | 1 | 79 | 1 | 79 | 7.24e-53 | 164 |
| Msa0338430 | MtrunA17_Chr4g0043421 | 64.035 | 114 | 41 | 0 | 28 | 141 | 10 | 123 | 1.20e-52 | 166 |
| Msa0338430 | MtrunA17_Chr5g0437571 | 63.717 | 113 | 41 | 0 | 32 | 144 | 5 | 117 | 2.31e-51 | 163 |
| Msa0338430 | MtrunA17_Chr3g0114061 | 63.964 | 111 | 40 | 0 | 32 | 142 | 7 | 117 | 4.74e-51 | 162 |
| Msa0338430 | MtrunA17_Chr3g0106101 | 62.385 | 109 | 41 | 0 | 32 | 140 | 6 | 114 | 3.57e-49 | 157 |
| Msa0338430 | MtrunA17_Chr5g0438091 | 56.637 | 113 | 49 | 0 | 32 | 144 | 38 | 150 | 2.13e-44 | 146 |
| Msa0338430 | MtrunA17_Chr6g0449641 | 54.098 | 122 | 56 | 0 | 25 | 146 | 1 | 122 | 3.21e-44 | 144 |
| Msa0338430 | MtrunA17_Chr3g0117121 | 59.048 | 105 | 43 | 0 | 32 | 136 | 9 | 113 | 7.42e-43 | 142 |
| Msa0338430 | MtrunA17_Chr4g0058651 | 57.944 | 107 | 45 | 0 | 32 | 138 | 10 | 116 | 1.38e-42 | 141 |
| Msa0338430 | MtrunA17_Chr3g0129071 | 55.357 | 112 | 50 | 0 | 30 | 141 | 44 | 155 | 2.28e-42 | 142 |
| Msa0338430 | MtrunA17_Chr3g0115431 | 59.804 | 102 | 41 | 0 | 32 | 133 | 8 | 109 | 7.43e-42 | 140 |
| Msa0338430 | MtrunA17_Chr7g0227511 | 60.194 | 103 | 41 | 0 | 32 | 134 | 10 | 112 | 1.02e-41 | 138 |
| Msa0338430 | MtrunA17_Chr6g0449651 | 52.459 | 122 | 58 | 0 | 25 | 146 | 59 | 180 | 1.39e-41 | 139 |
| Msa0338430 | MtrunA17_Chr5g0432451 | 58.929 | 112 | 46 | 0 | 30 | 141 | 40 | 151 | 5.10e-40 | 136 |
| Msa0338430 | MtrunA17_Chr5g0402611 | 56.863 | 102 | 44 | 0 | 32 | 133 | 7 | 108 | 1.02e-38 | 135 |
| Msa0338430 | MtrunA17_Chr3g0097221 | 53.271 | 107 | 50 | 0 | 32 | 138 | 6 | 112 | 2.53e-37 | 130 |
| Msa0338430 | MtrunA17_Chr3g0113891 | 58.333 | 96 | 40 | 0 | 32 | 127 | 13 | 108 | 3.61e-36 | 125 |
| Msa0338430 | MtrunA17_Chr5g0437401 | 55.882 | 102 | 45 | 0 | 32 | 133 | 10 | 111 | 7.38e-36 | 124 |
| Msa0338430 | MtrunA17_Chr8g0353981 | 61.728 | 81 | 31 | 0 | 32 | 112 | 6 | 86 | 1.67e-34 | 122 |
| Msa0338430 | MtrunA17_Chr6g0460951 | 41.060 | 151 | 78 | 3 | 30 | 175 | 37 | 181 | 4.32e-34 | 120 |
| Msa0338430 | MtrunA17_Chr7g0225111 | 44.144 | 111 | 62 | 0 | 29 | 139 | 1 | 111 | 5.85e-34 | 117 |
| Msa0338430 | MtrunA17_Chr7g0260971 | 53.398 | 103 | 47 | 1 | 32 | 133 | 13 | 115 | 2.16e-33 | 119 |
| Msa0338430 | MtrunA17_Chr8g0351721 | 51.402 | 107 | 51 | 1 | 32 | 137 | 17 | 123 | 8.83e-33 | 117 |
| Msa0338430 | MtrunA17_Chr1g0184281 | 50.909 | 110 | 53 | 1 | 26 | 134 | 8 | 117 | 2.36e-32 | 115 |
| Msa0338430 | MtrunA17_Chr7g0245871 | 50.000 | 102 | 50 | 1 | 33 | 133 | 27 | 128 | 4.83e-32 | 115 |
| Msa0338430 | MtrunA17_Chr8g0374601 | 49.038 | 104 | 53 | 0 | 30 | 133 | 23 | 126 | 5.77e-32 | 116 |
| Msa0338430 | MtrunA17_Chr8g0374591 | 44.262 | 122 | 65 | 1 | 30 | 148 | 5 | 126 | 5.78e-32 | 112 |
| Msa0338430 | MtrunA17_Chr8g0351701 | 48.148 | 108 | 55 | 1 | 32 | 138 | 22 | 129 | 1.61e-31 | 114 |
| Msa0338430 | MtrunA17_Chr5g0444351 | 38.298 | 141 | 77 | 2 | 29 | 159 | 1 | 141 | 1.75e-31 | 111 |
| Msa0338430 | MtrunA17_Chr1g0184271 | 51.961 | 102 | 46 | 2 | 33 | 131 | 12 | 113 | 5.59e-30 | 110 |
| Msa0338430 | MtrunA17_Chr7g0261031 | 51.546 | 97 | 46 | 1 | 32 | 127 | 7 | 103 | 8.20e-30 | 109 |
| Msa0338430 | MtrunA17_Chr5g0435641 | 48.958 | 96 | 48 | 1 | 32 | 126 | 6 | 101 | 4.56e-28 | 104 |
| Msa0338430 | MtrunA17_Chr8g0374581 | 47.170 | 106 | 55 | 1 | 30 | 134 | 5 | 110 | 2.15e-27 | 103 |
| Msa0338430 | MtrunA17_Chr6g0452691 | 32.530 | 166 | 95 | 4 | 34 | 194 | 10 | 163 | 2.20e-26 | 99.8 |
| Msa0338430 | MtrunA17_Chr6g0452661 | 42.857 | 119 | 63 | 2 | 34 | 147 | 10 | 128 | 2.43e-26 | 101 |
| Msa0338430 | MtrunA17_Chr6g0460941 | 45.455 | 88 | 47 | 1 | 33 | 119 | 7 | 94 | 1.70e-25 | 94.7 |
| Msa0338430 | MtrunA17_Chr4g0059901 | 45.161 | 93 | 51 | 0 | 34 | 126 | 11 | 103 | 3.24e-25 | 98.6 |
| Msa0338430 | MtrunA17_Chr7g0245861 | 39.496 | 119 | 69 | 2 | 32 | 147 | 11 | 129 | 4.97e-24 | 92.4 |
| Msa0338430 | MtrunA17_Chr4g0040831 | 37.838 | 111 | 66 | 1 | 30 | 137 | 12 | 122 | 4.13e-23 | 91.7 |
| Msa0338430 | MtrunA17_Chr6g0452671 | 48.101 | 79 | 41 | 0 | 34 | 112 | 12 | 90 | 1.16e-22 | 90.5 |
| Msa0338430 | MtrunA17_Chr4g0055441 | 44.211 | 95 | 48 | 2 | 34 | 123 | 3 | 97 | 5.17e-22 | 87.8 |
| Msa0338430 | MtrunA17_Chr2g0330201 | 38.000 | 100 | 62 | 0 | 34 | 133 | 20 | 119 | 3.49e-21 | 88.6 |
| Msa0338430 | MtrunA17_Chr8g0342351 | 39.048 | 105 | 59 | 1 | 34 | 138 | 13 | 112 | 2.18e-20 | 85.9 |
| Msa0338430 | MtrunA17_Chr5g0439111 | 46.250 | 80 | 42 | 1 | 34 | 112 | 10 | 89 | 3.63e-18 | 79.3 |
| Msa0338430 | MtrunA17_Chr4g0046201 | 32.955 | 88 | 59 | 0 | 32 | 119 | 5 | 92 | 3.16e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338430 | AT2G28500.1 | 67.204 | 186 | 41 | 4 | 29 | 198 | 51 | 232 | 1.07e-80 | 240 |
| Msa0338430 | AT1G07900.1 | 61.692 | 201 | 62 | 3 | 1 | 198 | 1 | 189 | 1.10e-79 | 236 |
| Msa0338430 | AT2G30130.1 | 65.741 | 108 | 37 | 0 | 32 | 139 | 7 | 114 | 6.41e-51 | 163 |
| Msa0338430 | AT1G31320.1 | 66.667 | 114 | 38 | 0 | 28 | 141 | 8 | 121 | 1.49e-46 | 151 |
| Msa0338430 | AT1G16530.1 | 61.111 | 108 | 41 | 1 | 31 | 137 | 12 | 119 | 1.15e-44 | 146 |
| Msa0338430 | AT5G63090.4 | 58.182 | 110 | 46 | 0 | 32 | 141 | 10 | 119 | 4.21e-44 | 145 |
| Msa0338430 | AT5G63090.3 | 58.182 | 110 | 46 | 0 | 32 | 141 | 10 | 119 | 4.21e-44 | 145 |
| Msa0338430 | AT5G63090.2 | 58.182 | 110 | 46 | 0 | 32 | 141 | 10 | 119 | 4.21e-44 | 145 |
| Msa0338430 | AT5G63090.1 | 58.182 | 110 | 46 | 0 | 32 | 141 | 10 | 119 | 4.21e-44 | 145 |
| Msa0338430 | AT2G30340.2 | 50.820 | 122 | 60 | 0 | 23 | 144 | 43 | 164 | 5.87e-43 | 145 |
| Msa0338430 | AT2G30340.1 | 50.820 | 122 | 60 | 0 | 23 | 144 | 42 | 163 | 6.87e-43 | 145 |
| Msa0338430 | AT3G27650.1 | 60.194 | 103 | 41 | 0 | 32 | 134 | 38 | 140 | 2.29e-42 | 140 |
| Msa0338430 | AT2G23660.2 | 56.731 | 104 | 45 | 0 | 32 | 135 | 4 | 107 | 2.73e-41 | 142 |
| Msa0338430 | AT2G23660.3 | 56.731 | 104 | 45 | 0 | 32 | 135 | 4 | 107 | 2.73e-41 | 142 |
| Msa0338430 | AT2G23660.1 | 56.731 | 104 | 45 | 0 | 32 | 135 | 4 | 107 | 2.73e-41 | 142 |
| Msa0338430 | AT2G40470.2 | 57.265 | 117 | 49 | 1 | 31 | 147 | 18 | 133 | 8.04e-39 | 132 |
| Msa0338430 | AT3G26660.1 | 52.778 | 108 | 51 | 0 | 34 | 141 | 6 | 113 | 1.28e-38 | 129 |
| Msa0338430 | AT5G66870.1 | 56.863 | 102 | 44 | 0 | 32 | 133 | 6 | 107 | 1.34e-38 | 135 |
| Msa0338430 | AT2G40470.1 | 57.265 | 117 | 49 | 1 | 31 | 147 | 43 | 158 | 1.38e-38 | 132 |
| Msa0338430 | AT3G26620.1 | 52.778 | 108 | 51 | 0 | 34 | 141 | 6 | 113 | 1.72e-38 | 129 |
| Msa0338430 | AT1G65620.1 | 56.637 | 113 | 49 | 0 | 25 | 137 | 1 | 113 | 3.40e-36 | 125 |
| Msa0338430 | AT1G65620.4 | 56.637 | 113 | 49 | 0 | 25 | 137 | 1 | 113 | 3.40e-36 | 125 |
| Msa0338430 | AT1G65620.3 | 56.637 | 113 | 49 | 0 | 25 | 137 | 1 | 113 | 3.40e-36 | 125 |
| Msa0338430 | AT1G65620.5 | 56.637 | 113 | 49 | 0 | 25 | 137 | 1 | 113 | 3.40e-36 | 125 |
| Msa0338430 | AT1G65620.2 | 56.637 | 113 | 49 | 0 | 25 | 137 | 1 | 113 | 3.40e-36 | 125 |
| Msa0338430 | AT4G00210.1 | 56.075 | 107 | 46 | 1 | 32 | 137 | 10 | 116 | 4.41e-36 | 126 |
| Msa0338430 | AT3G11090.1 | 52.427 | 103 | 49 | 0 | 32 | 134 | 10 | 112 | 2.09e-35 | 122 |
| Msa0338430 | AT3G03760.1 | 48.214 | 112 | 57 | 1 | 32 | 142 | 50 | 161 | 5.70e-34 | 122 |
| Msa0338430 | AT3G58190.1 | 43.243 | 148 | 69 | 5 | 33 | 178 | 11 | 145 | 2.42e-31 | 114 |
| Msa0338430 | AT4G00220.1 | 49.038 | 104 | 52 | 1 | 36 | 138 | 20 | 123 | 6.53e-31 | 113 |
| Msa0338430 | AT2G45410.1 | 53.398 | 103 | 47 | 1 | 36 | 137 | 19 | 121 | 9.44e-31 | 111 |
| Msa0338430 | AT2G31310.1 | 52.577 | 97 | 45 | 1 | 32 | 127 | 6 | 102 | 1.00e-30 | 111 |
| Msa0338430 | AT2G42430.1 | 47.664 | 107 | 55 | 1 | 32 | 137 | 14 | 120 | 1.90e-30 | 112 |
| Msa0338430 | AT2G45420.1 | 50.000 | 104 | 51 | 1 | 36 | 138 | 40 | 143 | 3.59e-30 | 112 |
| Msa0338430 | AT2G42440.1 | 49.550 | 111 | 50 | 2 | 32 | 141 | 6 | 111 | 4.35e-29 | 108 |
| Msa0338430 | AT5G06080.1 | 43.750 | 112 | 62 | 1 | 32 | 142 | 6 | 117 | 2.58e-27 | 102 |
| Msa0338430 | AT3G50510.1 | 44.231 | 104 | 58 | 0 | 30 | 133 | 9 | 112 | 4.85e-27 | 102 |
| Msa0338430 | AT3G50510.2 | 44.231 | 104 | 58 | 0 | 30 | 133 | 9 | 112 | 4.85e-27 | 102 |
| Msa0338430 | AT3G47870.1 | 41.667 | 108 | 58 | 1 | 32 | 139 | 35 | 137 | 5.78e-25 | 99.8 |
| Msa0338430 | AT5G35900.1 | 42.000 | 100 | 58 | 0 | 34 | 133 | 6 | 105 | 6.36e-25 | 97.1 |
| Msa0338430 | AT1G72980.1 | 44.211 | 95 | 53 | 0 | 32 | 126 | 12 | 106 | 1.69e-24 | 95.9 |
| Msa0338430 | AT3G13850.1 | 40.000 | 105 | 58 | 1 | 34 | 138 | 37 | 136 | 3.00e-22 | 91.3 |
| Msa0338430 | AT1G06280.1 | 40.260 | 77 | 46 | 0 | 34 | 110 | 25 | 101 | 4.75e-17 | 76.3 |
| Msa0338430 | AT2G19820.1 | 38.043 | 92 | 56 | 1 | 29 | 119 | 8 | 99 | 1.63e-16 | 72.8 |
| Msa0338430 | AT4G22700.1 | 38.235 | 102 | 59 | 3 | 34 | 133 | 6 | 105 | 1.28e-15 | 72.0 |
| Msa0338430 | AT1G36000.1 | 32.353 | 102 | 69 | 0 | 25 | 126 | 1 | 102 | 2.12e-12 | 62.0 |
| Msa0338430 | AT5G15060.1 | 41.892 | 74 | 39 | 2 | 34 | 104 | 18 | 90 | 2.79e-11 | 59.3 |
Find 41 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGCTCATTGACTTGCTTT+TGG | 0.237207 | 2_4:-58700178 | None:intergenic |
| ACCACTGCTCATCGTGTATT+TGG | 0.246441 | 2_4:+58697705 | Msa0338430:CDS |
| GAGGCTCCCACAATGAATTT+TGG | 0.257844 | 2_4:-58700397 | None:intergenic |
| ATTCATTGTGGGAGCCTCTT+TGG | 0.264450 | 2_4:+58700402 | Msa0338430:CDS |
| ACGATGAGCAGTGGTAAATT+TGG | 0.308489 | 2_4:-58697697 | None:intergenic |
| GGTTCAGTGGGAGGGAAATA+AGG | 0.330275 | 2_4:-58697672 | None:intergenic |
| CAACATCATCAAGTTCTTAC+AGG | 0.365225 | 2_4:+58697734 | Msa0338430:CDS |
| GATGTTGGAGATTGAGAAAA+TGG | 0.370101 | 2_4:-58697555 | None:intergenic |
| AGAATAAGAGACCCTGTATA+TGG | 0.385791 | 2_4:+58700131 | Msa0338430:CDS |
| AAATAATCTCAACTTCTTTG+AGG | 0.394029 | 2_4:+58700364 | Msa0338430:CDS |
| GATTGTTGTGGAGATTCATT+TGG | 0.432048 | 2_4:-58700296 | None:intergenic |
| GGTAAATTTGGAAGGTTCAG+TGG | 0.438516 | 2_4:-58697685 | None:intergenic |
| ATGTGCTGAGAAATGTGTTT+TGG | 0.444237 | 2_4:+58697647 | Msa0338430:CDS |
| GCACCTGCACATCCATATAC+AGG | 0.450577 | 2_4:-58700143 | None:intergenic |
| AGTTAGTAGCATGGTTTATG+AGG | 0.452667 | 2_4:+58700100 | Msa0338430:CDS |
| GCAAATCAAAGCTAGGAGAT+TGG | 0.453679 | 2_4:-58700255 | None:intergenic |
| TAAGAACTTGATGATGTTGC+TGG | 0.462784 | 2_4:-58697730 | None:intergenic |
| TCTCCTAGCTTTGATTTGCA+TGG | 0.470568 | 2_4:+58700259 | Msa0338430:CDS |
| GCATCAGCTCTTTGAGACTC+TGG | 0.485917 | 2_4:-58700077 | None:intergenic |
| ATTTGGAAGGTTCAGTGGGA+GGG | 0.499239 | 2_4:-58697680 | None:intergenic |
| TGATAATCACTGCTGTAGGC+AGG | 0.499915 | 2_4:-58700341 | None:intergenic |
| CACTAGCCAAAATTCATTGT+GGG | 0.528888 | 2_4:+58700391 | Msa0338430:CDS |
| TTTCCATGCAAATCAAAGCT+AGG | 0.531294 | 2_4:-58700262 | None:intergenic |
| AACATCTTCACAACCACCCA+TGG | 0.540139 | 2_4:+58697572 | Msa0338430:CDS |
| CATGACAACTTGAGGAGCCA+TGG | 0.548052 | 2_4:-58697589 | None:intergenic |
| AATTTGGAAGGTTCAGTGGG+AGG | 0.549947 | 2_4:-58697681 | None:intergenic |
| GCTCAACTTCATGTCCAAAG+AGG | 0.560755 | 2_4:-58700416 | None:intergenic |
| GTAAATTTGGAAGGTTCAGT+GGG | 0.562077 | 2_4:-58697684 | None:intergenic |
| GACCCTGTATATGGATGTGC+AGG | 0.562336 | 2_4:+58700140 | Msa0338430:CDS |
| AGCTGATGCAGTTAGTAGCA+TGG | 0.566903 | 2_4:+58700091 | Msa0338430:CDS |
| TGAGCAGTGGTAAATTTGGA+AGG | 0.588814 | 2_4:-58697693 | None:intergenic |
| TGAATCTCCACAACAATCAG+TGG | 0.592712 | 2_4:+58700301 | Msa0338430:CDS |
| AAAATCTTGCAAGCAGCACA+AGG | 0.592933 | 2_4:-58697615 | None:intergenic |
| CAAGGACTCATGACAACTTG+AGG | 0.595290 | 2_4:-58697597 | None:intergenic |
| ACCAAATACACGATGAGCAG+TGG | 0.596399 | 2_4:-58697706 | None:intergenic |
| ATGACAACTTGAGGAGCCAT+GGG | 0.603272 | 2_4:-58697588 | None:intergenic |
| CACCTGCACATCCATATACA+GGG | 0.624861 | 2_4:-58700142 | None:intergenic |
| ATGGGTGGTTGTGAAGATGT+TGG | 0.630512 | 2_4:-58697570 | None:intergenic |
| ACACTAGCCAAAATTCATTG+TGG | 0.631207 | 2_4:+58700390 | Msa0338430:CDS |
| AAATTGTCCACTGATTGTTG+TGG | 0.665010 | 2_4:-58700308 | None:intergenic |
| ACAACTTGAGGAGCCATGGG+TGG | 0.729415 | 2_4:-58697585 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr2_4:58698200-58698219 | Msa0338430:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr2_4:58698201-58698220 | Msa0338430:intron | 10.0% |
| !!! | GTTATTTAAAACAAAAAAAT+TGG | - | chr2_4:58699827-58699846 | None:intergenic | 10.0% |
| !!! | AAAAATTCACAAGATTTTAT+AGG | - | chr2_4:58697810-58697829 | None:intergenic | 15.0% |
| !!! | CATTTTTTATAGATCAAAAT+AGG | - | chr2_4:58697989-58698008 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr2_4:58698202-58698221 | Msa0338430:intron | 15.0% |
| !! | AAAATGGAATATATTGTATT+GGG | + | chr2_4:58698225-58698244 | Msa0338430:intron | 15.0% |
| !! | TAATTAGAGTTATATTGTAT+TGG | + | chr2_4:58698265-58698284 | Msa0338430:intron | 15.0% |
| !!! | GACACTTTTTTTTTAAAAAT+GGG | + | chr2_4:58698335-58698354 | Msa0338430:intron | 15.0% |
| !!! | ATTGTATGATTTTCTATATA+TGG | + | chr2_4:58698435-58698454 | Msa0338430:intron | 15.0% |
| !! | TGTATATTAGTAAAGAAATA+TGG | - | chr2_4:58698723-58698742 | None:intergenic | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr2_4:58699051-58699070 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr2_4:58699052-58699071 | None:intergenic | 15.0% |
| !! | AAAGTGAAATATATTGTATT+GGG | - | chr2_4:58699092-58699111 | None:intergenic | 15.0% |
| !! | AAAAGTGAAATATATTGTAT+TGG | - | chr2_4:58699093-58699112 | None:intergenic | 15.0% |
| !! | AATTTCATAGATAATATTTC+CGG | + | chr2_4:58699418-58699437 | Msa0338430:intron | 15.0% |
| !!! | TGTTTTAAATAACTTATTCA+TGG | + | chr2_4:58699834-58699853 | Msa0338430:intron | 15.0% |
| !!! | TATTTTTGTCAAAGTTAATG+TGG | + | chr2_4:58697928-58697947 | Msa0338430:intron | 20.0% |
| !! | GAAAATGGAATATATTGTAT+TGG | + | chr2_4:58698224-58698243 | Msa0338430:intron | 20.0% |
| !!! | TTGAAATGACTCATTTATTT+TGG | + | chr2_4:58698312-58698331 | Msa0338430:intron | 20.0% |
| !!! | TGAAATGACTCATTTATTTT+GGG | + | chr2_4:58698313-58698332 | Msa0338430:intron | 20.0% |
| !!! | GGACACTTTTTTTTTAAAAA+TGG | + | chr2_4:58698334-58698353 | Msa0338430:intron | 20.0% |
| !!! | GTCTTTTTTTTGAAGAAATT+AGG | - | chr2_4:58698500-58698519 | None:intergenic | 20.0% |
| !! | GGTATCATTCAAAATTAATT+AGG | - | chr2_4:58698529-58698548 | None:intergenic | 20.0% |
| !!! | TAAAGTGTTACTTTAATAGA+GGG | - | chr2_4:58698628-58698647 | None:intergenic | 20.0% |
| !! | AAATATGGTTAAAGTAAGTT+AGG | - | chr2_4:58698708-58698727 | None:intergenic | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr2_4:58698982-58699001 | None:intergenic | 20.0% |
| !!! | AAGAAAAGTGTATAAATGAA+GGG | - | chr2_4:58699116-58699135 | None:intergenic | 20.0% |
| !!! | TAAGAAAAGTGTATAAATGA+AGG | - | chr2_4:58699117-58699136 | None:intergenic | 20.0% |
| !!! | CTATGAAATTGAATTTTCAA+AGG | - | chr2_4:58699408-58699427 | None:intergenic | 20.0% |
| !!! | ATGTGAAGTTTTATTTACAA+CGG | - | chr2_4:58699447-58699466 | None:intergenic | 20.0% |
| !! | ACGATAGTTAAGTAAAATTT+AGG | + | chr2_4:58699885-58699904 | Msa0338430:intron | 20.0% |
| !!! | GTAGTTTTACTTTACAATAC+AGG | + | chr2_4:58697756-58697775 | Msa0338430:intron | 25.0% |
| ! | ATCAAAATAGGTGAATAGTT+AGG | - | chr2_4:58697977-58697996 | None:intergenic | 25.0% |
| ! | TTCATCATATTGACACAAAA+AGG | - | chr2_4:58698109-58698128 | None:intergenic | 25.0% |
| ! | TGTATAAATAAAGGGGAAAA+TGG | + | chr2_4:58698209-58698228 | Msa0338430:intron | 25.0% |
| ! | ATCATACAATAGTCAACAAA+TGG | - | chr2_4:58698425-58698444 | None:intergenic | 25.0% |
| ! | TTCTATATATGGTATGTTGA+TGG | + | chr2_4:58698446-58698465 | Msa0338430:intron | 25.0% |
| ! | TCTATATATGGTATGTTGAT+GGG | + | chr2_4:58698447-58698466 | Msa0338430:intron | 25.0% |
| !!! | GTAAAGTGTTACTTTAATAG+AGG | - | chr2_4:58698629-58698648 | None:intergenic | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr2_4:58698983-58699002 | None:intergenic | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | - | chr2_4:58699004-58699023 | None:intergenic | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | - | chr2_4:58699005-58699024 | None:intergenic | 25.0% |
| ! | TTCTTTCTACTAGATATTAG+AGG | - | chr2_4:58699244-58699263 | None:intergenic | 25.0% |
| ! | ACACGGTATATGTTAAATTT+AGG | - | chr2_4:58699301-58699320 | None:intergenic | 25.0% |
| ! | TAAATTTAACATATACCGTG+TGG | + | chr2_4:58699300-58699319 | Msa0338430:intron | 25.0% |
| ! | ATATTGTCTTGCGTATTAAA+TGG | - | chr2_4:58699357-58699376 | None:intergenic | 25.0% |
| ! | AATGCATAATTTCCAAGATA+AGG | - | chr2_4:58699540-58699559 | None:intergenic | 25.0% |
| !!! | TGAAGTGTTACTTATAATAG+TGG | + | chr2_4:58699737-58699756 | Msa0338430:intron | 25.0% |
| ! | AAATAATCTCAACTTCTTTG+AGG | + | chr2_4:58700364-58700383 | Msa0338430:CDS | 25.0% |
| ! | AAGATTTTATAGGCCTGTAT+AGG | - | chr2_4:58697800-58697819 | None:intergenic | 30.0% |
| GAATAGTTAGGTGAATTTGA+CGG | - | chr2_4:58697965-58697984 | None:intergenic | 30.0% | |
| TTTAGATCATGTTACATACG+TGG | - | chr2_4:58698045-58698064 | None:intergenic | 30.0% | |
| ! | TCAAACTGACTCAGATAAAA+CGG | - | chr2_4:58698166-58698185 | None:intergenic | 30.0% |
| TAAAAATGGGTCAGATATTC+CGG | + | chr2_4:58698348-58698367 | Msa0338430:intron | 30.0% | |
| CTATATATGGTATGTTGATG+GGG | + | chr2_4:58698448-58698467 | Msa0338430:intron | 30.0% | |
| !!! | CTTTTGTGAGACTAGTTTAA+GGG | - | chr2_4:58698550-58698569 | None:intergenic | 30.0% |
| !!! | TCTTTTGTGAGACTAGTTTA+AGG | - | chr2_4:58698551-58698570 | None:intergenic | 30.0% |
| ! | ATGCATTGACATGTGTAATA+AGG | + | chr2_4:58698858-58698877 | Msa0338430:intron | 30.0% |
| TCAACTGTGTCAAGTATTAA+GGG | + | chr2_4:58698881-58698900 | Msa0338430:intron | 30.0% | |
| !!! | TCTTTTAAGACTTTCTCCAT+CGG | + | chr2_4:58699187-58699206 | Msa0338430:intron | 30.0% |
| ! | AATAAAACAACCTTTTCCGA+TGG | - | chr2_4:58699206-58699225 | None:intergenic | 30.0% |
| CTTGTTAGAATTAATGCAAG+AGG | - | chr2_4:58699330-58699349 | None:intergenic | 30.0% | |
| TTAAAGTAGCAACCTTATCT+TGG | + | chr2_4:58699525-58699544 | Msa0338430:intron | 30.0% | |
| TACTTATAATAGTGGCTGAA+TGG | + | chr2_4:58699745-58699764 | Msa0338430:intron | 30.0% | |
| CTATATAACTTTGACTCAAG+TGG | - | chr2_4:58699966-58699985 | None:intergenic | 30.0% | |
| !!! | TTCTCCTCCATTTTTTTTTC+AGG | + | chr2_4:58700049-58700068 | Msa0338430:intron | 30.0% |
| AGTTCCTGAAAAAAAAATGG+AGG | - | chr2_4:58700056-58700075 | None:intergenic | 30.0% | |
| GGAAGTTCCTGAAAAAAAAA+TGG | - | chr2_4:58700059-58700078 | None:intergenic | 30.0% | |
| !! | ATTTTGATAATCACTGCTGT+AGG | - | chr2_4:58700348-58700367 | None:intergenic | 30.0% |
| GATGTTGGAGATTGAGAAAA+TGG | - | chr2_4:58697558-58697577 | None:intergenic | 35.0% | |
| ! | ATGTGCTGAGAAATGTGTTT+TGG | + | chr2_4:58697647-58697666 | Msa0338430:CDS | 35.0% |
| GTAAATTTGGAAGGTTCAGT+GGG | - | chr2_4:58697687-58697706 | None:intergenic | 35.0% | |
| !! | TAAGAACTTGATGATGTTGC+TGG | - | chr2_4:58697733-58697752 | None:intergenic | 35.0% |
| CAACATCATCAAGTTCTTAC+AGG | + | chr2_4:58697734-58697753 | Msa0338430:CDS | 35.0% | |
| ATGTTACATACGTGGTCAAA+TGG | - | chr2_4:58698037-58698056 | None:intergenic | 35.0% | |
| ! | CAAACTGACTCAGATAAAAC+GGG | - | chr2_4:58698165-58698184 | None:intergenic | 35.0% |
| AAAAATGGGTCAGATATTCC+GGG | + | chr2_4:58698349-58698368 | Msa0338430:intron | 35.0% | |
| GTCAACTGTGTCAAGTATTA+AGG | + | chr2_4:58698880-58698899 | Msa0338430:intron | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr2_4:58698969-58698988 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr2_4:58699138-58699157 | Msa0338430:intron | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | + | chr2_4:58699151-58699170 | Msa0338430:intron | 35.0% | |
| CAAAGTAGGTCAATTATACC+GGG | + | chr2_4:58699152-58699171 | Msa0338430:intron | 35.0% | |
| ATTTAACATATACCGTGTGG+TGG | + | chr2_4:58699303-58699322 | Msa0338430:intron | 35.0% | |
| TTTAACATATACCGTGTGGT+GGG | + | chr2_4:58699304-58699323 | Msa0338430:intron | 35.0% | |
| !!! | GTTTTATTTACAACGGTGAC+CGG | - | chr2_4:58699440-58699459 | None:intergenic | 35.0% |
| TATGCTAACAAGTGTCCTTA+AGG | - | chr2_4:58699643-58699662 | None:intergenic | 35.0% | |
| TTATTCATGGTGAAAGACCA+TGG | + | chr2_4:58699847-58699866 | Msa0338430:intron | 35.0% | |
| GACCATGGTAATTCAAAGTT+CGG | + | chr2_4:58699862-58699881 | Msa0338430:intron | 35.0% | |
| AGTTAGTAGCATGGTTTATG+AGG | + | chr2_4:58700100-58700119 | Msa0338430:CDS | 35.0% | |
| AGAATAAGAGACCCTGTATA+TGG | + | chr2_4:58700131-58700150 | Msa0338430:CDS | 35.0% | |
| TTTCCATGCAAATCAAAGCT+AGG | - | chr2_4:58700265-58700284 | None:intergenic | 35.0% | |
| GATTGTTGTGGAGATTCATT+TGG | - | chr2_4:58700299-58700318 | None:intergenic | 35.0% | |
| ! | AAATTGTCCACTGATTGTTG+TGG | - | chr2_4:58700311-58700330 | None:intergenic | 35.0% |
| ACACTAGCCAAAATTCATTG+TGG | + | chr2_4:58700390-58700409 | Msa0338430:CDS | 35.0% | |
| CACTAGCCAAAATTCATTGT+GGG | + | chr2_4:58700391-58700410 | Msa0338430:CDS | 35.0% | |
| AAAATCTTGCAAGCAGCACA+AGG | - | chr2_4:58697618-58697637 | None:intergenic | 40.0% | |
| GGTAAATTTGGAAGGTTCAG+TGG | - | chr2_4:58697688-58697707 | None:intergenic | 40.0% | |
| TGAGCAGTGGTAAATTTGGA+AGG | - | chr2_4:58697696-58697715 | None:intergenic | 40.0% | |
| ACGATGAGCAGTGGTAAATT+TGG | - | chr2_4:58697700-58697719 | None:intergenic | 40.0% | |
| TATAGGTACTTAGGCTAGTG+TGG | - | chr2_4:58697783-58697802 | None:intergenic | 40.0% | |
| ! | ACTAGCCTAAGTACCTATAC+AGG | + | chr2_4:58697784-58697803 | Msa0338430:intron | 40.0% |
| ATAGGCCTGTATAGGTACTT+AGG | - | chr2_4:58697792-58697811 | None:intergenic | 40.0% | |
| CGTCGTCATTCTAAATTCAC+AGG | - | chr2_4:58697851-58697870 | None:intergenic | 40.0% | |
| CTGTGTCAAGTATTAAGGGA+CGG | + | chr2_4:58698885-58698904 | Msa0338430:intron | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr2_4:58698968-58698987 | None:intergenic | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | - | chr2_4:58699154-58699173 | None:intergenic | 40.0% | |
| AAGACTTTCTCCATCGGAAA+AGG | + | chr2_4:58699193-58699212 | Msa0338430:intron | 40.0% | |
| AATCCTTAACGAGTGCCTTA+AGG | + | chr2_4:58699625-58699644 | Msa0338430:intron | 40.0% | |
| GTCCGAACTTTGAATTACCA+TGG | - | chr2_4:58699867-58699886 | None:intergenic | 40.0% | |
| GCTTGTCTTGAACTCTCAAT+CGG | - | chr2_4:58699994-58700013 | None:intergenic | 40.0% | |
| !!! | GAAGCTCATTGACTTGCTTT+TGG | - | chr2_4:58700181-58700200 | None:intergenic | 40.0% |
| GCAAATCAAAGCTAGGAGAT+TGG | - | chr2_4:58700258-58700277 | None:intergenic | 40.0% | |
| !! | TCTCCTAGCTTTGATTTGCA+TGG | + | chr2_4:58700259-58700278 | Msa0338430:CDS | 40.0% |
| TGAATCTCCACAACAATCAG+TGG | + | chr2_4:58700301-58700320 | Msa0338430:CDS | 40.0% | |
| ATGGGTGGTTGTGAAGATGT+TGG | - | chr2_4:58697573-58697592 | None:intergenic | 45.0% | |
| AACATCTTCACAACCACCCA+TGG | + | chr2_4:58697572-58697591 | Msa0338430:CDS | 45.0% | |
| ATGACAACTTGAGGAGCCAT+GGG | - | chr2_4:58697591-58697610 | None:intergenic | 45.0% | |
| CAAGGACTCATGACAACTTG+AGG | - | chr2_4:58697600-58697619 | None:intergenic | 45.0% | |
| ATTTGGAAGGTTCAGTGGGA+GGG | - | chr2_4:58697683-58697702 | None:intergenic | 45.0% | |
| AATTTGGAAGGTTCAGTGGG+AGG | - | chr2_4:58697684-58697703 | None:intergenic | 45.0% | |
| ACCACTGCTCATCGTGTATT+TGG | + | chr2_4:58697705-58697724 | Msa0338430:CDS | 45.0% | |
| ACCAAATACACGATGAGCAG+TGG | - | chr2_4:58697709-58697728 | None:intergenic | 45.0% | |
| CTGACTCAGATAAAACGGGA+CGG | - | chr2_4:58698161-58698180 | None:intergenic | 45.0% | |
| AGTCATCTATTGCGAGACTG+GGG | - | chr2_4:58698662-58698681 | None:intergenic | 45.0% | |
| GAGTCATCTATTGCGAGACT+GGG | - | chr2_4:58698663-58698682 | None:intergenic | 45.0% | |
| TGAGTCATCTATTGCGAGAC+TGG | - | chr2_4:58698664-58698683 | None:intergenic | 45.0% | |
| GTAGGTCAATTATACCGGGA+CGG | + | chr2_4:58699156-58699175 | Msa0338430:intron | 45.0% | |
| ! | TGTCCTTAAGGCACTCGTTA+AGG | - | chr2_4:58699631-58699650 | None:intergenic | 45.0% |
| AGCTGATGCAGTTAGTAGCA+TGG | + | chr2_4:58700091-58700110 | Msa0338430:CDS | 45.0% | |
| CACCTGCACATCCATATACA+GGG | - | chr2_4:58700145-58700164 | None:intergenic | 45.0% | |
| !!! | GCTCATTGACTTGCTTTTGG+AGG | - | chr2_4:58700178-58700197 | None:intergenic | 45.0% |
| TGATAATCACTGCTGTAGGC+AGG | - | chr2_4:58700344-58700363 | None:intergenic | 45.0% | |
| ! | GAGGCTCCCACAATGAATTT+TGG | - | chr2_4:58700400-58700419 | None:intergenic | 45.0% |
| ATTCATTGTGGGAGCCTCTT+TGG | + | chr2_4:58700402-58700421 | Msa0338430:CDS | 45.0% | |
| CATGACAACTTGAGGAGCCA+TGG | - | chr2_4:58697592-58697611 | None:intergenic | 50.0% | |
| GGTTCAGTGGGAGGGAAATA+AGG | - | chr2_4:58697675-58697694 | None:intergenic | 50.0% | |
| CTCAGATAAAACGGGACGGA+GGG | - | chr2_4:58698157-58698176 | None:intergenic | 50.0% | |
| ACTCAGATAAAACGGGACGG+AGG | - | chr2_4:58698158-58698177 | None:intergenic | 50.0% | |
| ATGGGTCAGATATTCCGGGA+CGG | + | chr2_4:58698353-58698372 | Msa0338430:intron | 50.0% | |
| ATCTATTACTCCCTCCGTCC+CGG | - | chr2_4:58698370-58698389 | None:intergenic | 50.0% | |
| GTCATCTATTGCGAGACTGG+GGG | - | chr2_4:58698661-58698680 | None:intergenic | 50.0% | |
| TATTACTACTCCCTCCGTCC+CGG | + | chr2_4:58698947-58698966 | Msa0338430:intron | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr2_4:58698964-58698983 | None:intergenic | 50.0% | |
| GTCAATTATACCGGGACGGA+GGG | + | chr2_4:58699160-58699179 | Msa0338430:intron | 50.0% | |
| AAAAGATACTCCCTCCGTCC+CGG | - | chr2_4:58699173-58699192 | None:intergenic | 50.0% | |
| !! | GCATCAGCTCTTTGAGACTC+TGG | - | chr2_4:58700080-58700099 | None:intergenic | 50.0% |
| GACCCTGTATATGGATGTGC+AGG | + | chr2_4:58700140-58700159 | Msa0338430:CDS | 50.0% | |
| GCACCTGCACATCCATATAC+AGG | - | chr2_4:58700146-58700165 | None:intergenic | 50.0% | |
| ACAACTTGAGGAGCCATGGG+TGG | - | chr2_4:58697588-58697607 | None:intergenic | 55.0% | |
| GTCAGATATTCCGGGACGGA+GGG | + | chr2_4:58698357-58698376 | Msa0338430:intron | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr2_4:58698960-58698979 | None:intergenic | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | + | chr2_4:58699159-58699178 | Msa0338430:intron | 55.0% | |
| AATGCAAGAGGCCCACCACA+CGG | - | chr2_4:58699318-58699337 | None:intergenic | 55.0% | |
| GGTCAGATATTCCGGGACGG+AGG | + | chr2_4:58698356-58698375 | Msa0338430:intron | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr2_4:58698961-58698980 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 58697519 | 58700430 | 58697519 | ID=Msa0338430;Name=Msa0338430 |
| chr2_4 | mRNA | 58697519 | 58700430 | 58697519 | ID=Msa0338430-mRNA-1;Parent=Msa0338430;Name=Msa0338430-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|198 |
| chr2_4 | exon | 58697519 | 58697755 | 58697519 | ID=Msa0338430-mRNA-1:exon:18119;Parent=Msa0338430-mRNA-1 |
| chr2_4 | exon | 58700071 | 58700430 | 58700071 | ID=Msa0338430-mRNA-1:exon:18120;Parent=Msa0338430-mRNA-1 |
| chr2_4 | CDS | 58697519 | 58697755 | 58697519 | ID=Msa0338430-mRNA-1:cds;Parent=Msa0338430-mRNA-1 |
| chr2_4 | CDS | 58700071 | 58700430 | 58700071 | ID=Msa0338430-mRNA-1:cds;Parent=Msa0338430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
