AlfalfaGEDB | Msa0300880

M. sativa cultivar zhongmu-4 / Msa0300880

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF03195.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0300880	XP_003597159.1	97.980	198	4	0	1	198	1	198	1.04e-141	403

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0300880	sp\|Q9SK08\|LBD11_ARATH	66.667	186	42	4	29	198	51	232	3.89e-79	238

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0300880	TF	LOB

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0263310	Msa0300880	0.973698	7.166072e-137	-8.615850e-47
Msa0300880	Msa0338430	0.886573	3.041928e-72	-8.615850e-47

Showing 1 to 2 of 2 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0300880	MtrunA17_Chr4g0030001	73.913	184	42	4	17	198	11	190	1.41e-95	276
Msa0300880	MtrunA17_Chr2g0326051	94.400	125	7	0	74	198	1	125	4.34e-84	244
Msa0300880	MtrunA17_Chr1g0200201	72.121	165	38	4	34	198	73	229	5.43e-78	233
Msa0300880	MtrunA17_Chr2g0311601	69.912	113	34	0	28	140	8	120	1.98e-57	178
Msa0300880	MtrunA17_Chr2g0326041	98.734	79	1	0	1	79	1	79	7.24e-53	164
Msa0300880	MtrunA17_Chr4g0043421	64.035	114	41	0	28	141	10	123	1.42e-52	166
Msa0300880	MtrunA17_Chr5g0437571	63.717	113	41	0	32	144	5	117	2.46e-51	163
Msa0300880	MtrunA17_Chr3g0114061	63.964	111	40	0	32	142	7	117	5.23e-51	162
Msa0300880	MtrunA17_Chr3g0106101	62.385	109	41	0	32	140	6	114	4.07e-49	157
Msa0300880	MtrunA17_Chr5g0438091	56.637	113	49	0	32	144	38	150	2.18e-44	146

Showing 1 to 10 of 49 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0300880	AT2G28500.1	66.667	186	42	4	29	198	51	232	3.96e-80	238
Msa0300880	AT1G07900.1	61.194	201	63	3	1	198	1	189	4.55e-79	234
Msa0300880	AT2G30130.1	65.741	108	37	0	32	139	7	114	7.97e-51	162
Msa0300880	AT1G31320.1	66.667	114	38	0	28	141	8	121	1.76e-46	151
Msa0300880	AT1G16530.1	61.111	108	41	1	31	137	12	119	1.16e-44	146
Msa0300880	AT5G63090.4	58.182	110	46	0	32	141	10	119	4.90e-44	145
Msa0300880	AT5G63090.3	58.182	110	46	0	32	141	10	119	4.90e-44	145
Msa0300880	AT5G63090.2	58.182	110	46	0	32	141	10	119	4.90e-44	145
Msa0300880	AT5G63090.1	58.182	110	46	0	32	141	10	119	4.90e-44	145
Msa0300880	AT2G30340.2	50.820	122	60	0	23	144	43	164	5.74e-43	145

Showing 1 to 10 of 47 entries

Previous1 2 3 4 5Next

Find 39 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTTGCAAGCAGCACA+AGG	0.592933	2_3:-56493184	None:intergenic
AAATTGTCCACTGATTGTTG+TGG	0.665010	2_3:-56496154	None:intergenic
AACATCTTCACAACCACCTA+TGG	0.461696	2_3:+56493141	Msa0300880:CDS
AATTTGGAAGGTTCAGTGGG+AGG	0.549947	2_3:-56493250	None:intergenic
ACAACTTGAGGAGCCATAGG+TGG	0.673868	2_3:-56493154	None:intergenic
ACACTAGCCAAAATTCATTG+TGG	0.631207	2_3:+56496236	Msa0300880:CDS
ACCAAATACACGATGAGCAG+TGG	0.596399	2_3:-56493275	None:intergenic
ACCACTGCTCATCGTGTATT+TGG	0.246441	2_3:+56493274	Msa0300880:CDS
ACGATGAGCAGTGGTAAATT+TGG	0.308489	2_3:-56493266	None:intergenic
AGAATAAGAGACCCTGTATA+TGG	0.385791	2_3:+56495977	Msa0300880:CDS

Showing 1 to 10 of 39 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TATTTAAGGAGTCCTTGTTA+GGG	-	chr2_3:56493386-56493405	None:intergenic	30.0%
AAGGAACAGACAACTATATA+AGG	-	chr2_3:56493777-56493796	None:intergenic	30.0%
TATAGTTGTCTGTTCCTTAA+CGG	+	chr2_3:56493779-56493798	Msa0300880:intron	30.0%
AACATGTCATTGTGAATTCA+CGG	-	chr2_3:56493947-56493966	None:intergenic	30.0%
GAATAGTTAGGTGAATTTGA+CGG	-	chr2_3:56494034-56494053	None:intergenic	30.0%
AATAGTCAACAAATGGTCTA+TGG	-	chr2_3:56494223-56494242	None:intergenic	30.0%
CTATATATGGTATGTTGATG+GGG	+	chr2_3:56494253-56494272	Msa0300880:intron	30.0%
TCAACTGTGTCAAGTATTAA+GGG	+	chr2_3:56494683-56494702	Msa0300880:intron	30.0%
ATGATGTACCTACATGTATT+TGG	-	chr2_3:56494839-56494858	None:intergenic	30.0%
GGTACATCATCAATAATATG+GGG	+	chr2_3:56494849-56494868	Msa0300880:intron	30.0%

Showing 1 to 10 of 187 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	56493088	56496276	56493088	ID=Msa0300880;Name=Msa0300880
chr2_3	mRNA	56493088	56496276	56493088	ID=Msa0300880-mRNA-1;Parent=Msa0300880;Name=Msa0300880-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|2\|0\|198
chr2_3	exon	56493088	56493324	56493088	ID=Msa0300880-mRNA-1:exon:18113;Parent=Msa0300880-mRNA-1
chr2_3	exon	56495917	56496276	56495917	ID=Msa0300880-mRNA-1:exon:18114;Parent=Msa0300880-mRNA-1
chr2_3	CDS	56493088	56493324	56493088	ID=Msa0300880-mRNA-1:cds;Parent=Msa0300880-mRNA-1
chr2_3	CDS	56495917	56496276	56495917	ID=Msa0300880-mRNA-1:cds;Parent=Msa0300880-mRNA-1

Gene Sequence

>Msa0300880

ATGGAGAATGACACAAACACTCGAATTTCTTCTCTTCCATTTTCTCAATCTCCAACATCTTCACAACCACCTATGGCTCCTCAAGTTGTCATGAGTCCTTGTGCTGCTTGCAAGATTTTAAGAAGAAGATGTGCTGAGAAATGTGTTTTGGCACCTTATTTCCCTCCCACTGAACCTTCCAAATTTACCACTGCTCATCGTGTATTTGGTGCCAGCAACATCATCAAGTTCTTACAGGAACTTCCAGAGTCTCAAAGAGCTGATGCAGTTAGTAGCATGGTTTATGAGGCTAGTGCAAGAATAAGAGACCCTGTATATGGATGTGCAGGTGCAATTTGTCACCTCCAAAAGCAAGTCAATGAGCTTCAAGCACAACTAGCTAAGTCACAAGCTGAGCTTATTAACATGCAATTACAACAATCCAATCTCCTAGCTTTGATTTGCATGGAAATGAAAGAAACTCCAAATGAATCTCCACAACAATCAGTGGACAATTTCATTTCAAGTCCTGCCTACAGCAGTGATTATCAAAATAATCTCAACTTCTTTGACGACAACACTAGCCAAAATTCATTGTGGGAGCCTCTTTGGACATGA

Protein sequence

>Msa0300880

MENDTNTRISSLPFSQSPTSSQPPMAPQVVMSPCAACKILRRRCAEKCVLAPYFPPTEPSKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVNELQAQLAKSQAELINMQLQQSNLLALICMEMKETPNESPQQSVDNFISSPAYSSDYQNNLNFFDDNTSQNSLWEPLWT*