Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0267690 | XP_024631121.1 | 95.756 | 919 | 39 | 0 | 1 | 919 | 1 | 919 | 0.0 | 1714 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0267690 | sp|O48724|WEB1_ARATH | 56.925 | 787 | 290 | 15 | 160 | 914 | 36 | 805 | 0.0 | 757 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0267690 | G7I3K8 | 95.756 | 919 | 39 | 0 | 1 | 919 | 1 | 919 | 0.0 | 1714 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0267690 | Msa0574930 | 0.806074 | 9.813126e-50 | -8.615850e-47 |
| Msa0267690 | Msa0930740 | 0.821569 | 3.766735e-53 | -8.615850e-47 |
| Msa0267690 | Msa1415410 | 0.800199 | 1.612273e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0267690 | MtrunA17_Chr1g0153431 | 95.756 | 919 | 39 | 0 | 1 | 919 | 1 | 919 | 0.0 | 1714 |
| Msa0267690 | MtrunA17_Chr3g0133891 | 65.405 | 766 | 241 | 6 | 167 | 919 | 193 | 947 | 0.0 | 917 |
| Msa0267690 | MtrunA17_Chr8g0369191 | 47.883 | 685 | 290 | 12 | 246 | 916 | 3 | 634 | 1.06e-156 | 474 |
| Msa0267690 | MtrunA17_Chr3g0102681 | 26.648 | 698 | 425 | 17 | 249 | 919 | 4 | 641 | 1.87e-25 | 112 |
| Msa0267690 | MtrunA17_Chr2g0290651 | 26.667 | 600 | 368 | 16 | 258 | 834 | 13 | 563 | 3.32e-22 | 102 |
| Msa0267690 | MtrunA17_Chr7g0244501 | 30.970 | 268 | 175 | 6 | 576 | 841 | 177 | 436 | 1.36e-19 | 94.0 |
| Msa0267690 | MtrunA17_Chr4g0013151 | 32.075 | 265 | 174 | 2 | 575 | 838 | 229 | 488 | 4.05e-19 | 92.4 |
| Msa0267690 | MtrunA17_Chr5g0446731 | 26.247 | 381 | 248 | 6 | 272 | 640 | 21 | 380 | 8.06e-12 | 69.3 |
| Msa0267690 | MtrunA17_Chr3g0078801 | 27.225 | 382 | 243 | 8 | 272 | 640 | 21 | 380 | 8.71e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0267690 | AT2G26570.1 | 56.925 | 787 | 290 | 15 | 160 | 914 | 36 | 805 | 0.0 | 757 |
| Msa0267690 | AT2G26570.2 | 56.925 | 787 | 290 | 15 | 160 | 914 | 36 | 805 | 0.0 | 757 |
| Msa0267690 | AT4G33390.1 | 58.114 | 647 | 247 | 5 | 271 | 914 | 153 | 778 | 0.0 | 643 |
| Msa0267690 | AT5G42880.1 | 46.508 | 673 | 298 | 8 | 258 | 914 | 122 | 748 | 1.32e-158 | 484 |
| Msa0267690 | AT1G45545.2 | 47.270 | 641 | 293 | 5 | 273 | 913 | 155 | 750 | 6.31e-150 | 461 |
| Msa0267690 | AT1G45545.1 | 47.270 | 641 | 293 | 5 | 273 | 913 | 154 | 749 | 6.53e-150 | 461 |
| Msa0267690 | AT5G55860.1 | 26.339 | 672 | 405 | 18 | 272 | 912 | 20 | 632 | 1.78e-14 | 78.2 |
| Msa0267690 | AT1G12150.2 | 24.382 | 566 | 378 | 12 | 272 | 831 | 19 | 540 | 5.70e-11 | 66.6 |
| Msa0267690 | AT1G12150.1 | 24.382 | 566 | 378 | 12 | 272 | 831 | 19 | 540 | 5.70e-11 | 66.6 |
| Msa0267690 | AT2G38370.2 | 29.010 | 293 | 173 | 10 | 556 | 841 | 136 | 400 | 6.61e-11 | 66.6 |
| Msa0267690 | AT2G38370.1 | 28.859 | 298 | 177 | 10 | 551 | 841 | 114 | 383 | 7.10e-11 | 66.2 |
Find 164 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCTGGTTTACTACATTT+TGG | 0.153241 | 2_2:-69393550 | None:intergenic |
| CTTCATCATCGTCTCCTTCT+TGG | 0.154867 | 2_2:-69392653 | None:intergenic |
| TTCTGAGGTAAATTACTTAA+AGG | 0.258185 | 2_2:+69392782 | Msa0267690:CDS |
| GATTGCCACAAAAGAGTCTT+TGG | 0.263769 | 2_2:+69392395 | Msa0267690:CDS |
| GGTCATGCAAACAATGAAAA+TGG | 0.264151 | 2_2:+69393650 | Msa0267690:CDS |
| GGGGTATCTGCTAGTGAATT+TGG | 0.270120 | 2_2:-69390835 | None:intergenic |
| GCTTCTTTAGTTGATGAAAA+AGG | 0.277807 | 2_2:+69392291 | Msa0267690:CDS |
| AAGGAAGCTGTTTCTAAGTT+TGG | 0.278467 | 2_2:+69391744 | Msa0267690:CDS |
| TCATGAACTGTTTCTTCTTT+CGG | 0.287701 | 2_2:-69391072 | None:intergenic |
| AAAGCACATCCAACTCATTC+AGG | 0.287960 | 2_2:+69393752 | Msa0267690:CDS |
| TTTCAATTCTTAATCATAAT+AGG | 0.296039 | 2_2:-69390376 | None:intergenic |
| ATCACTAACATGTACAAATA+TGG | 0.298966 | 2_2:-69393870 | None:intergenic |
| CGGAGAAAAGCCAGTGAAAT+AGG | 0.303438 | 2_2:+69393527 | Msa0267690:CDS |
| GACGCTTCTTGAAGCTTCTT+TGG | 0.305159 | 2_2:-69392990 | None:intergenic |
| GAGATCAAGATTCTCTCAAT+TGG | 0.317442 | 2_2:+69392478 | Msa0267690:CDS |
| AGCTGAGTTAAATGCCTATA+TGG | 0.326058 | 2_2:+69392617 | Msa0267690:CDS |
| TACCACTATGATTTATGTTC+TGG | 0.328707 | 2_2:-69393565 | None:intergenic |
| TGCCGTTGCAATTCTCGAAT+TGG | 0.338661 | 2_2:-69393318 | None:intergenic |
| TTTATCACCTAGTGATTTGA+TGG | 0.340103 | 2_2:-69390917 | None:intergenic |
| AGCAGTTGAGTCGGCCAAAA+AGG | 0.354376 | 2_2:+69392722 | Msa0267690:CDS |
| CATTGTACTAGCACCGGCTT+TGG | 0.354894 | 2_2:-69393093 | None:intergenic |
| GGAATTAAGTTCATCACCTT+TGG | 0.365911 | 2_2:+69393940 | Msa0267690:three_prime_UTR |
| AAGGCAAGGGAAGGAAAATT+AGG | 0.367717 | 2_2:+69393461 | Msa0267690:CDS |
| GTTTGACTTTGATTCCATAT+AGG | 0.370779 | 2_2:-69392631 | None:intergenic |
| AAAATTGTACGAGGAGATTC+CGG | 0.373780 | 2_2:+69391963 | Msa0267690:CDS |
| TTCAATGGAAGAATAATTAT+CGG | 0.381290 | 2_2:-69390890 | None:intergenic |
| GATAGTATCACACCATTTGA+TGG | 0.385892 | 2_2:-69393242 | None:intergenic |
| TGTGTATAGCCATTGAATTT+CGG | 0.387944 | 2_2:+69394002 | Msa0267690:three_prime_UTR |
| TTGCCTTGCTTGATGCTCTT+CGG | 0.398129 | 2_2:-69392100 | None:intergenic |
| TGATTTGATGGAAGCTTCAA+TGG | 0.398698 | 2_2:-69390905 | None:intergenic |
| TCTGAACAAGAATCTTTAGA+TGG | 0.399008 | 2_2:+69391480 | Msa0267690:CDS |
| GGCACTCGTATACCTTGCTT+TGG | 0.399846 | 2_2:-69392214 | None:intergenic |
| GAATTGAAAGCTTGCAGAAA+GGG | 0.400309 | 2_2:+69390390 | Msa0267690:five_prime_UTR |
| CGATGCAGCAACAGCATCTT+CGG | 0.403753 | 2_2:-69392331 | None:intergenic |
| CTTCGGTTTGTGCCCTCTCT+AGG | 0.404658 | 2_2:-69392083 | None:intergenic |
| AATCTGTAACCACTGGTTCC+TGG | 0.405067 | 2_2:-69391458 | None:intergenic |
| ATGCATATAAACAACCTTTA+GGG | 0.408601 | 2_2:-69391257 | None:intergenic |
| GGTTGGAGCTGTTATTATAT+CGG | 0.413352 | 2_2:-69390869 | None:intergenic |
| GCTTCTGATGAACAATCTAT+AGG | 0.415441 | 2_2:+69391009 | Msa0267690:CDS |
| AGCGTCTGAAGAGGCAAATA+TGG | 0.416213 | 2_2:+69393007 | Msa0267690:CDS |
| GTTGAGATGTCTCCTGTTGC+AGG | 0.416977 | 2_2:-69390347 | None:intergenic |
| GGCTGCCACACTGGAATCTT+CGG | 0.417044 | 2_2:-69392172 | None:intergenic |
| CGAGCTGAATAAAATTAAAT+CGG | 0.418284 | 2_2:+69392911 | Msa0267690:CDS |
| ATCAGCACATTCTGCACATA+TGG | 0.418937 | 2_2:+69392419 | Msa0267690:CDS |
| ACAAAGAAATAGTTGCTAGA+AGG | 0.429802 | 2_2:+69393405 | Msa0267690:CDS |
| TTGTCTTCAACTTCCTCCAT+TGG | 0.430502 | 2_2:-69390787 | None:intergenic |
| GGCAACCTCGAGTTGCGCCT+TGG | 0.433398 | 2_2:-69392193 | None:intergenic |
| CACTTCATTCAACTTCTCCA+TGG | 0.439248 | 2_2:-69393381 | None:intergenic |
| AGGAGTCTCAAAGGAGCAAC+TGG | 0.446933 | 2_2:+69392674 | Msa0267690:CDS |
| AATCATTGCTTGCCTCGATT+AGG | 0.449762 | 2_2:+69392844 | Msa0267690:CDS |
| AGTTTGGAGGAATTGTTGAT+TGG | 0.452122 | 2_2:+69391760 | Msa0267690:CDS |
| TAGATTACTTGCAGCTCAAA+AGG | 0.454559 | 2_2:+69393121 | Msa0267690:CDS |
| TTACAGAAGCCGAAATTCAA+TGG | 0.458957 | 2_2:-69394011 | None:intergenic |
| ATTCAGCTCGACTTCGATAG+AGG | 0.460475 | 2_2:-69392898 | None:intergenic |
| ATTCCTGATGTTGCTGTTGG+AGG | 0.463115 | 2_2:+69391642 | Msa0267690:CDS |
| TAGAGCAAGAATTAAGAAAG+TGG | 0.463769 | 2_2:+69393486 | Msa0267690:CDS |
| TTGCGCCTTGGCTGCCACAC+TGG | 0.466144 | 2_2:-69392181 | None:intergenic |
| AAGAAAATTGCTGAAAATAG+AGG | 0.467267 | 2_2:+69391687 | Msa0267690:CDS |
| TGATGTTGATCATAATCATA+TGG | 0.475833 | 2_2:+69391191 | Msa0267690:CDS |
| GAAGCTGTTTCTAAGTTTGG+AGG | 0.479133 | 2_2:+69391747 | Msa0267690:CDS |
| GAGAAGCTTGCGAAGTGCTT+AGG | 0.479925 | 2_2:+69393045 | Msa0267690:CDS |
| CAAAGAAATAGTTGCTAGAA+GGG | 0.481229 | 2_2:+69393406 | Msa0267690:CDS |
| CACCGATGTTAACTCTGTAA+TGG | 0.484336 | 2_2:-69392235 | None:intergenic |
| TGCAAGAGCTTCTGAAAGGT+TGG | 0.484392 | 2_2:+69393154 | Msa0267690:CDS |
| AATCAGCAGCTATGGCTCCT+AGG | 0.494717 | 2_2:-69391110 | None:intergenic |
| GAAGCTTCTTTGGCAGCTCA+AGG | 0.501880 | 2_2:-69392980 | None:intergenic |
| GGACTTGAAAAGTAATGTAC+AGG | 0.501997 | 2_2:-69393617 | None:intergenic |
| TGGAGGAATTGTTGATTGGA+AGG | 0.503438 | 2_2:+69391764 | Msa0267690:CDS |
| TGTTCAGAATCTGTAACCAC+TGG | 0.504918 | 2_2:-69391465 | None:intergenic |
| GAAGACAAACCAACCTCCTC+AGG | 0.505020 | 2_2:+69390802 | Msa0267690:CDS |
| AATGAAGTGGATCCATCAAA+TGG | 0.505603 | 2_2:+69393230 | Msa0267690:CDS |
| AGATCAAGATTCTCTCAATT+GGG | 0.505960 | 2_2:+69392479 | Msa0267690:CDS |
| AAAGCTCAGAGTGGAAGAAA+TGG | 0.509731 | 2_2:+69392137 | Msa0267690:CDS |
| TTATAATCAGATGGATCTAA+CGG | 0.509966 | 2_2:+69391548 | Msa0267690:CDS |
| ACACCTCCAACAGCAACATC+AGG | 0.511136 | 2_2:-69391645 | None:intergenic |
| ACGAGGAGATTCCGGAGTAC+AGG | 0.513676 | 2_2:+69391971 | Msa0267690:CDS |
| GAATGATCACAAAGAACTAA+AGG | 0.515894 | 2_2:+69391599 | Msa0267690:CDS |
| AACTTCAGCATCTGAGGTTG+AGG | 0.515980 | 2_2:-69391415 | None:intergenic |
| ATGGAAGAATAATTATCGGT+TGG | 0.516612 | 2_2:-69390886 | None:intergenic |
| CGAAGTGCTTAGGAGAGTAA+AGG | 0.517384 | 2_2:+69393055 | Msa0267690:CDS |
| TCAACATTTCCTGAGGAGGT+TGG | 0.520106 | 2_2:-69390811 | None:intergenic |
| GAAGCAGAAGAACACAGAAT+AGG | 0.520706 | 2_2:+69392441 | Msa0267690:CDS |
| GCTTCCTTGACAGATTCAAA+TGG | 0.521527 | 2_2:-69391729 | None:intergenic |
| AGAACATACCCTGATTAAGC+AGG | 0.522764 | 2_2:-69389951 | None:intergenic |
| AGATTCCAGTGTGGCAGCCA+AGG | 0.524007 | 2_2:+69392176 | Msa0267690:CDS |
| CAAATCTTCTGTTACAGAAG+AGG | 0.527933 | 2_2:-69391226 | None:intergenic |
| ACATCAGGAATCTTGATTTG+AGG | 0.528054 | 2_2:-69391630 | None:intergenic |
| TGGATAAATCTGAGAAGGCA+AGG | 0.529566 | 2_2:+69393447 | Msa0267690:CDS |
| AAGTTCAGAATCAGCAGCTA+TGG | 0.529866 | 2_2:-69391118 | None:intergenic |
| AAGATTCCTGATGTTGCTGT+TGG | 0.533042 | 2_2:+69391639 | Msa0267690:CDS |
| GGAATCATTGAAGATTGCTA+TGG | 0.544639 | 2_2:+69393427 | Msa0267690:CDS |
| TTGAGGAGCATCAATAACTT+CGG | 0.545249 | 2_2:-69391382 | None:intergenic |
| TCCTCACCGGATGTGAAAAG+TGG | 0.546596 | 2_2:+69393674 | Msa0267690:CDS |
| TGTCAAGCTCCTGAAGTACT+TGG | 0.546825 | 2_2:-69392026 | None:intergenic |
| AGAATTGAAAGCTTGCAGAA+AGG | 0.548483 | 2_2:+69390389 | Msa0267690:five_prime_UTR |
| TGGTTCAACATTTCCTGAGG+AGG | 0.552244 | 2_2:-69390815 | None:intergenic |
| CAAGAAGGAGACGATGATGA+AGG | 0.555626 | 2_2:+69392654 | Msa0267690:CDS |
| GTTTGCATGACCATAAGACT+TGG | 0.556311 | 2_2:-69393639 | None:intergenic |
| GAAGCAGAACAAGCCAAAGC+CGG | 0.559252 | 2_2:+69393080 | Msa0267690:CDS |
| AAGCACATCCAACTCATTCA+GGG | 0.559299 | 2_2:+69393753 | Msa0267690:CDS |
| TTCTGAGATCGATATAGCTA+AGG | 0.564068 | 2_2:+69393343 | Msa0267690:CDS |
| TGAGGTAAATTACTTAAAGG+TGG | 0.567020 | 2_2:+69392785 | Msa0267690:CDS |
| GCTTCAAGAAGCGTCTGAAG+AGG | 0.567157 | 2_2:+69392998 | Msa0267690:CDS |
| AACTCGAGGTTGCCAAAGCA+AGG | 0.569107 | 2_2:+69392202 | Msa0267690:CDS |
| GGAGACTGAATTGAAAACCA+TGG | 0.569236 | 2_2:+69393364 | Msa0267690:CDS |
| AAGATTCTCTCAATTGGGAG+AGG | 0.572141 | 2_2:+69392484 | Msa0267690:CDS |
| GATTAGGCAAAGAGAGGGAA+TGG | 0.573233 | 2_2:+69392860 | Msa0267690:CDS |
| TGGTATTGTGAACATGCATA+AGG | 0.573798 | 2_2:+69391500 | Msa0267690:CDS |
| AACTAAAACTGAGCCTAGAG+AGG | 0.574371 | 2_2:+69392070 | Msa0267690:CDS |
| AACCAGAACATAAATCATAG+TGG | 0.575238 | 2_2:+69393563 | Msa0267690:CDS |
| ATCAAATGGTGTGATACTAT+CGG | 0.575258 | 2_2:+69393244 | Msa0267690:CDS |
| CGAGTTAGATTCGTTGCGTG+TGG | 0.575491 | 2_2:+69392263 | Msa0267690:CDS |
| GCTTCAACTGTTACTGCTAA+CGG | 0.576541 | 2_2:+69391168 | Msa0267690:CDS |
| TACATGAACTTCAGCATCTG+AGG | 0.576726 | 2_2:-69391421 | None:intergenic |
| CGATGATGAAGGAGTCTCAA+AGG | 0.577426 | 2_2:+69392665 | Msa0267690:CDS |
| TGCTATGGATAAATCTGAGA+AGG | 0.581662 | 2_2:+69393442 | Msa0267690:CDS |
| GGCAGCCAAGGCGCAACTCG+AGG | 0.584945 | 2_2:+69392188 | Msa0267690:CDS |
| GAATCAAAGTCAAACCAAGA+AGG | 0.585631 | 2_2:+69392639 | Msa0267690:CDS |
| TTTGCATGACCATAAGACTT+GGG | 0.589944 | 2_2:-69393638 | None:intergenic |
| CAATGAAAATGGATCCTCAC+CGG | 0.594662 | 2_2:+69393661 | Msa0267690:CDS |
| AAACCGAAGAGCATCAAGCA+AGG | 0.595409 | 2_2:+69392097 | Msa0267690:CDS |
| AGTGACTACCCTGAATGAGT+TGG | 0.597230 | 2_2:-69393761 | None:intergenic |
| GGATAAATCTGAGAAGGCAA+GGG | 0.599722 | 2_2:+69393448 | Msa0267690:CDS |
| TCCCTCTCTTTGCCTAATCG+AGG | 0.600136 | 2_2:-69392856 | None:intergenic |
| AGCTTCTCGAGCAAGCAAGT+TGG | 0.600585 | 2_2:-69393030 | None:intergenic |
| AGCTCCATTTGAATCTGTCA+AGG | 0.604461 | 2_2:+69391725 | Msa0267690:CDS |
| AGATTCTCTCAATTGGGAGA+GGG | 0.608093 | 2_2:+69392485 | Msa0267690:CDS |
| AGAAAGTGGAGAGCAGAACA+TGG | 0.609255 | 2_2:+69393500 | Msa0267690:CDS |
| CATTTAATTTCAGCGAAGCA+AGG | 0.610917 | 2_2:+69391921 | Msa0267690:intron |
| GCCTCGATTAGGCAAAGAGA+GGG | 0.612208 | 2_2:+69392855 | Msa0267690:CDS |
| ACTATGCATTGTACTAGCAC+CGG | 0.614429 | 2_2:-69393099 | None:intergenic |
| GCTTTAGAAGATATACAAGA+TGG | 0.618193 | 2_2:+69391144 | Msa0267690:CDS |
| AGCCAATTCGAGAATTGCAA+CGG | 0.618494 | 2_2:+69393316 | Msa0267690:CDS |
| GATTTGCAGACTGACCCTAA+AGG | 0.619834 | 2_2:+69391243 | Msa0267690:CDS |
| ATTTGGTTCAACATTTCCTG+AGG | 0.620459 | 2_2:-69390818 | None:intergenic |
| TCCGGAGTACAGGAAAAGAT+CGG | 0.623837 | 2_2:+69391981 | Msa0267690:CDS |
| CATAGAGAAAGCTACTTCTG+AGG | 0.625329 | 2_2:+69392767 | Msa0267690:CDS |
| GAAGCTTCCATCAAATCACT+AGG | 0.625762 | 2_2:+69390910 | Msa0267690:CDS |
| AAATCTGAGAAGGCAAGGGA+AGG | 0.626732 | 2_2:+69393452 | Msa0267690:CDS |
| AAGCTGCAAGAGCTTCTGAA+AGG | 0.629129 | 2_2:+69393150 | Msa0267690:CDS |
| ATCGAAGCAAGTAGAAAAGA+CGG | 0.632458 | 2_2:+69392350 | Msa0267690:CDS |
| AGTGCTTAGGAGAGTAAAGG+AGG | 0.637367 | 2_2:+69393058 | Msa0267690:CDS |
| TAGAAGCAACAACAATGAAG+TGG | 0.641955 | 2_2:+69393217 | Msa0267690:CDS |
| GAAATAGAAGAAAACCACCT+AGG | 0.642343 | 2_2:+69391093 | Msa0267690:CDS |
| AATGCAAGCAGCAGTTGAGT+CGG | 0.646409 | 2_2:+69392713 | Msa0267690:CDS |
| ACACAGAATAGGAACAGTCA+TGG | 0.648205 | 2_2:+69392452 | Msa0267690:CDS |
| TGCCTCGATTAGGCAAAGAG+AGG | 0.654005 | 2_2:+69392854 | Msa0267690:CDS |
| GATAGAGGCAACTGTAATCG+AGG | 0.655183 | 2_2:-69392883 | None:intergenic |
| TGTAACAGAACAAAGTCACC+AGG | 0.655246 | 2_2:+69391440 | Msa0267690:CDS |
| AGAACTTGCAAAGCTCAGAG+TGG | 0.657807 | 2_2:+69392128 | Msa0267690:CDS |
| ACAAAGTCACCAGGAACCAG+TGG | 0.660157 | 2_2:+69391449 | Msa0267690:CDS |
| ACTAAAACTGAGCCTAGAGA+GGG | 0.671828 | 2_2:+69392071 | Msa0267690:CDS |
| AGAGTGGAAGAAATGGAGCA+AGG | 0.675194 | 2_2:+69392144 | Msa0267690:CDS |
| TTGAGATGTCTCCTGTTGCA+GGG | 0.677433 | 2_2:-69390346 | None:intergenic |
| GTGAACATGCATAAGGATGG+TGG | 0.677588 | 2_2:+69391507 | Msa0267690:CDS |
| AAGATTGAGATATACCTCGA+CGG | 0.686708 | 2_2:-69391802 | None:intergenic |
| CAGCAGCTATGGCTCCTAGG+TGG | 0.688143 | 2_2:-69391107 | None:intergenic |
| ATTGTGAACATGCATAAGGA+TGG | 0.696297 | 2_2:+69391504 | Msa0267690:CDS |
| TCATCGAATGATAGCCGTCG+AGG | 0.697705 | 2_2:+69391788 | Msa0267690:CDS |
| AGCATTGCAAGAGAGCGAGT+CGG | 0.699995 | 2_2:+69393193 | Msa0267690:CDS |
| GGAGAGCAGAACATGGACAA+CGG | 0.701482 | 2_2:+69393507 | Msa0267690:CDS |
| GGAGTACAGGAAAAGATCGG+AGG | 0.701685 | 2_2:+69391984 | Msa0267690:CDS |
| TGCCATTACAGAGTTAACAT+CGG | 0.702576 | 2_2:+69392233 | Msa0267690:CDS |
| TATTGCCGAAGATTCCAGTG+TGG | 0.782850 | 2_2:+69392167 | Msa0267690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATCAAATAACAAAAGT+AGG | - | chr2_2:69389985-69390004 | None:intergenic | 15.0% |
| !!! | TGATATAATTATTTCTCATA+TGG | + | chr2_2:69390197-69390216 | Msa0267690:intron | 15.0% |
| !!! | TAATAATTTTCTAGCAAATT+TGG | + | chr2_2:69390222-69390241 | Msa0267690:intron | 15.0% |
| !! | TTTCAATTCTTAATCATAAT+AGG | - | chr2_2:69390379-69390398 | None:intergenic | 15.0% |
| !!! | GAATATATCTGAATTATTTT+AGG | + | chr2_2:69390418-69390437 | Msa0267690:five_prime_UTR | 15.0% |
| !! | ATTATGATACATGAATTAAT+AGG | - | chr2_2:69390627-69390646 | None:intergenic | 15.0% |
| !!! | TAGTTTTTTTTATAATCAGA+TGG | + | chr2_2:69391539-69391558 | Msa0267690:CDS | 15.0% |
| !! | TATTATAGCCAAAAAAAATC+TGG | + | chr2_2:69390131-69390150 | Msa0267690:intron | 20.0% |
| !!! | GAGTTTAGTCAATTTTTATA+TGG | - | chr2_2:69390308-69390327 | None:intergenic | 20.0% |
| !! | AGAATAATGACATATACAAT+AGG | - | chr2_2:69390505-69390524 | None:intergenic | 20.0% |
| !! | AATTTGAATATGTATGCATA+GGG | + | chr2_2:69390583-69390602 | Msa0267690:intron | 20.0% |
| !! | TTCAATGGAAGAATAATTAT+CGG | - | chr2_2:69390893-69390912 | None:intergenic | 20.0% |
| !!! | TCAAAAAATTTTGTTTGCTA+AGG | + | chr2_2:69392545-69392564 | Msa0267690:CDS | 20.0% |
| ! | AAAAAATGAAGCGAAAAACT+TGG | - | chr2_2:69390042-69390061 | None:intergenic | 25.0% |
| !! | ATTATGAACTTTTTGCAACA+TGG | - | chr2_2:69390111-69390130 | None:intergenic | 25.0% |
| !!! | TTTGCAAACCAGATTTTTTT+TGG | - | chr2_2:69390142-69390161 | None:intergenic | 25.0% |
| !! | AACCTAGTGATAGTAATTTT+AGG | + | chr2_2:69390557-69390576 | Msa0267690:intron | 25.0% |
| ! | AACCTAAAATTACTATCACT+AGG | - | chr2_2:69390562-69390581 | None:intergenic | 25.0% |
| ! | CAATTTGAATATGTATGCAT+AGG | + | chr2_2:69390582-69390601 | Msa0267690:intron | 25.0% |
| !! | CTCAATTTCTTTTTAACCAA+TGG | + | chr2_2:69390771-69390790 | Msa0267690:exon | 25.0% |
| !! | AATTTCTTTTTAACCAATGG+AGG | + | chr2_2:69390774-69390793 | Msa0267690:exon | 25.0% |
| !! | TTATATCGGTATTTTCTTGA+GGG | - | chr2_2:69390858-69390877 | None:intergenic | 25.0% |
| !! | ATTATATCGGTATTTTCTTG+AGG | - | chr2_2:69390859-69390878 | None:intergenic | 25.0% |
| ! | ACTAGGTGATAAAAATATAG+TGG | + | chr2_2:69390927-69390946 | Msa0267690:CDS | 25.0% |
| ! | TGATGTTGATCATAATCATA+TGG | + | chr2_2:69391191-69391210 | Msa0267690:CDS | 25.0% |
| ! | ATGCATATAAACAACCTTTA+GGG | - | chr2_2:69391260-69391279 | None:intergenic | 25.0% |
| ! | TTATAATCAGATGGATCTAA+CGG | + | chr2_2:69391548-69391567 | Msa0267690:CDS | 25.0% |
| ! | AAGAAAATTGCTGAAAATAG+AGG | + | chr2_2:69391687-69391706 | Msa0267690:CDS | 25.0% |
| ! | TGAAACAATCGAAATTGAAA+CGG | - | chr2_2:69391897-69391916 | None:intergenic | 25.0% |
| !!! | TTCTGAGGTAAATTACTTAA+AGG | + | chr2_2:69392782-69392801 | Msa0267690:CDS | 25.0% |
| ! | CGAGCTGAATAAAATTAAAT+CGG | + | chr2_2:69392911-69392930 | Msa0267690:CDS | 25.0% |
| ! | ATCACTAACATGTACAAATA+TGG | - | chr2_2:69393873-69393892 | None:intergenic | 25.0% |
| ! | AATTTTCTTCCTGCTTAATC+AGG | + | chr2_2:69389942-69389961 | Msa0267690:five_prime_UTR | 30.0% |
| ! | ATTTTCTTCCTGCTTAATCA+GGG | + | chr2_2:69389943-69389962 | Msa0267690:five_prime_UTR | 30.0% |
| ! | AAAATCTGGTTTGCAAAGTT+TGG | + | chr2_2:69390145-69390164 | Msa0267690:intron | 30.0% |
| GTTTATGAAATTGCTTCTTC+TGG | + | chr2_2:69390470-69390489 | Msa0267690:intron | 30.0% | |
| ! | ACTTGCCTTTTAGATACTTT+TGG | + | chr2_2:69390744-69390763 | Msa0267690:intron | 30.0% |
| ! | TATATCGGTATTTTCTTGAG+GGG | - | chr2_2:69390857-69390876 | None:intergenic | 30.0% |
| ATGGAAGAATAATTATCGGT+TGG | - | chr2_2:69390889-69390908 | None:intergenic | 30.0% | |
| TTTATCACCTAGTGATTTGA+TGG | - | chr2_2:69390920-69390939 | None:intergenic | 30.0% | |
| ! | TCATGAACTGTTTCTTCTTT+CGG | - | chr2_2:69391075-69391094 | None:intergenic | 30.0% |
| !! | GCTTTAGAAGATATACAAGA+TGG | + | chr2_2:69391144-69391163 | Msa0267690:CDS | 30.0% |
| CATGCATATAAACAACCTTT+AGG | - | chr2_2:69391261-69391280 | None:intergenic | 30.0% | |
| TCTGAACAAGAATCTTTAGA+TGG | + | chr2_2:69391480-69391499 | Msa0267690:CDS | 30.0% | |
| GAATGATCACAAAGAACTAA+AGG | + | chr2_2:69391599-69391618 | Msa0267690:CDS | 30.0% | |
| ! | TTTTAGCAAAACACGAAGAA+AGG | - | chr2_2:69391829-69391848 | None:intergenic | 30.0% |
| CATGAAGAAGTTAAGTATTC+AGG | - | chr2_2:69391856-69391875 | None:intergenic | 30.0% | |
| !! | TACTTGGACTTTTTCTTGTT+CGG | - | chr2_2:69392013-69392032 | None:intergenic | 30.0% |
| !! | GCTTCTTTAGTTGATGAAAA+AGG | + | chr2_2:69392291-69392310 | Msa0267690:CDS | 30.0% |
| ! | TTTTGTGGCAATCAATTCAA+TGG | - | chr2_2:69392388-69392407 | None:intergenic | 30.0% |
| AGATCAAGATTCTCTCAATT+GGG | + | chr2_2:69392479-69392498 | Msa0267690:CDS | 30.0% | |
| ! | GTTTGACTTTGATTCCATAT+AGG | - | chr2_2:69392634-69392653 | None:intergenic | 30.0% |
| !! | TACTTCTTCAAGTTCCTTTT+TGG | - | chr2_2:69392739-69392758 | None:intergenic | 30.0% |
| TGAGGTAAATTACTTAAAGG+TGG | + | chr2_2:69392785-69392804 | Msa0267690:CDS | 30.0% | |
| !! | TATTGCTTTTGTTCAGATGA+AGG | + | chr2_2:69392935-69392954 | Msa0267690:CDS | 30.0% |
| ATCAAATGGTGTGATACTAT+CGG | + | chr2_2:69393244-69393263 | Msa0267690:CDS | 30.0% | |
| ACAAAGAAATAGTTGCTAGA+AGG | + | chr2_2:69393405-69393424 | Msa0267690:CDS | 30.0% | |
| CAAAGAAATAGTTGCTAGAA+GGG | + | chr2_2:69393406-69393425 | Msa0267690:CDS | 30.0% | |
| TAGAGCAAGAATTAAGAAAG+TGG | + | chr2_2:69393486-69393505 | Msa0267690:CDS | 30.0% | |
| !!! | TGTTCTGGTTTACTACATTT+TGG | - | chr2_2:69393553-69393572 | None:intergenic | 30.0% |
| AACCAGAACATAAATCATAG+TGG | + | chr2_2:69393563-69393582 | Msa0267690:CDS | 30.0% | |
| TACCACTATGATTTATGTTC+TGG | - | chr2_2:69393568-69393587 | None:intergenic | 30.0% | |
| ! | TGATTTTGCAGTATTGTGAA+TGG | + | chr2_2:69393889-69393908 | Msa0267690:three_prime_UTR | 30.0% |
| ! | TTTCCACTATGTGATTTTTG+AGG | + | chr2_2:69393913-69393932 | Msa0267690:three_prime_UTR | 30.0% |
| ! | TTTTGTTCTTTTCTCACCAA+AGG | - | chr2_2:69393959-69393978 | None:intergenic | 30.0% |
| ! | CCTTGAAAAAAGAAGCACAA+AGG | - | chr2_2:69390017-69390036 | None:intergenic | 35.0% |
| !!! | CCTTTGTGCTTCTTTTTTCA+AGG | + | chr2_2:69390014-69390033 | Msa0267690:intron | 35.0% |
| AGAATTGAAAGCTTGCAGAA+AGG | + | chr2_2:69390389-69390408 | Msa0267690:five_prime_UTR | 35.0% | |
| GAATTGAAAGCTTGCAGAAA+GGG | + | chr2_2:69390390-69390409 | Msa0267690:five_prime_UTR | 35.0% | |
| !! | GAGTGCCAAAAGTATCTAAA+AGG | - | chr2_2:69390752-69390771 | None:intergenic | 35.0% |
| ! | ATTTGGTTCAACATTTCCTG+AGG | - | chr2_2:69390821-69390840 | None:intergenic | 35.0% |
| GGTTGGAGCTGTTATTATAT+CGG | - | chr2_2:69390872-69390891 | None:intergenic | 35.0% | |
| TGATTTGATGGAAGCTTCAA+TGG | - | chr2_2:69390908-69390927 | None:intergenic | 35.0% | |
| GCTTCTGATGAACAATCTAT+AGG | + | chr2_2:69391009-69391028 | Msa0267690:CDS | 35.0% | |
| GAAATAGAAGAAAACCACCT+AGG | + | chr2_2:69391093-69391112 | Msa0267690:CDS | 35.0% | |
| CAAATCTTCTGTTACAGAAG+AGG | - | chr2_2:69391229-69391248 | None:intergenic | 35.0% | |
| !! | TTGAGGAGCATCAATAACTT+CGG | - | chr2_2:69391385-69391404 | None:intergenic | 35.0% |
| ! | GTTGAGGCTAAATTTTCTTG+AGG | - | chr2_2:69391402-69391421 | None:intergenic | 35.0% |
| TGGTATTGTGAACATGCATA+AGG | + | chr2_2:69391500-69391519 | Msa0267690:CDS | 35.0% | |
| ATTGTGAACATGCATAAGGA+TGG | + | chr2_2:69391504-69391523 | Msa0267690:CDS | 35.0% | |
| ! | ACATCAGGAATCTTGATTTG+AGG | - | chr2_2:69391633-69391652 | None:intergenic | 35.0% |
| ! | GCAATTTTCTTCTCACTTGT+AGG | - | chr2_2:69391678-69391697 | None:intergenic | 35.0% |
| !! | AAGGAAGCTGTTTCTAAGTT+TGG | + | chr2_2:69391744-69391763 | Msa0267690:CDS | 35.0% |
| AGTTTGGAGGAATTGTTGAT+TGG | + | chr2_2:69391760-69391779 | Msa0267690:CDS | 35.0% | |
| AAGATTGAGATATACCTCGA+CGG | - | chr2_2:69391805-69391824 | None:intergenic | 35.0% | |
| ! | CATTTAATTTCAGCGAAGCA+AGG | + | chr2_2:69391921-69391940 | Msa0267690:intron | 35.0% |
| ACAGCTTGAAAAATTGTACG+AGG | + | chr2_2:69391954-69391973 | Msa0267690:CDS | 35.0% | |
| AAAATTGTACGAGGAGATTC+CGG | + | chr2_2:69391963-69391982 | Msa0267690:CDS | 35.0% | |
| AGAAAAAGTCCAAGTACTTC+AGG | + | chr2_2:69392017-69392036 | Msa0267690:CDS | 35.0% | |
| TGCCATTACAGAGTTAACAT+CGG | + | chr2_2:69392233-69392252 | Msa0267690:CDS | 35.0% | |
| ATCGAAGCAAGTAGAAAAGA+CGG | + | chr2_2:69392350-69392369 | Msa0267690:CDS | 35.0% | |
| ! | TGATTCCAAAGACTCTTTTG+TGG | - | chr2_2:69392403-69392422 | None:intergenic | 35.0% |
| GAGATCAAGATTCTCTCAAT+TGG | + | chr2_2:69392478-69392497 | Msa0267690:CDS | 35.0% | |
| AGCTGAGTTAAATGCCTATA+TGG | + | chr2_2:69392617-69392636 | Msa0267690:CDS | 35.0% | |
| GAATCAAAGTCAAACCAAGA+AGG | + | chr2_2:69392639-69392658 | Msa0267690:CDS | 35.0% | |
| GTTCAGATGAAGGAAAAAGA+AGG | + | chr2_2:69392945-69392964 | Msa0267690:CDS | 35.0% | |
| TAGATTACTTGCAGCTCAAA+AGG | + | chr2_2:69393121-69393140 | Msa0267690:CDS | 35.0% | |
| TAGAAGCAACAACAATGAAG+TGG | + | chr2_2:69393217-69393236 | Msa0267690:CDS | 35.0% | |
| AATGAAGTGGATCCATCAAA+TGG | + | chr2_2:69393230-69393249 | Msa0267690:CDS | 35.0% | |
| GATAGTATCACACCATTTGA+TGG | - | chr2_2:69393245-69393264 | None:intergenic | 35.0% | |
| !! | TTCTGAGATCGATATAGCTA+AGG | + | chr2_2:69393343-69393362 | Msa0267690:CDS | 35.0% |
| GGAATCATTGAAGATTGCTA+TGG | + | chr2_2:69393427-69393446 | Msa0267690:CDS | 35.0% | |
| TGCTATGGATAAATCTGAGA+AGG | + | chr2_2:69393442-69393461 | Msa0267690:CDS | 35.0% | |
| !! | TACATTTTGGCCTATTTCAC+TGG | - | chr2_2:69393540-69393559 | None:intergenic | 35.0% |
| GGACTTGAAAAGTAATGTAC+AGG | - | chr2_2:69393620-69393639 | None:intergenic | 35.0% | |
| !!! | TTTTCAAGTCCCAAGTCTTA+TGG | + | chr2_2:69393629-69393648 | Msa0267690:CDS | 35.0% |
| TTTGCATGACCATAAGACTT+GGG | - | chr2_2:69393641-69393660 | None:intergenic | 35.0% | |
| GGTCATGCAAACAATGAAAA+TGG | + | chr2_2:69393650-69393669 | Msa0267690:CDS | 35.0% | |
| !! | TTCTTTCCACTTTTCACATC+CGG | - | chr2_2:69393683-69393702 | None:intergenic | 35.0% |
| GCAAAGAACATAAAAAGTCG+CGG | - | chr2_2:69393725-69393744 | None:intergenic | 35.0% | |
| TGTCCTCAAAAATCACATAG+TGG | - | chr2_2:69393919-69393938 | None:intergenic | 35.0% | |
| !! | CTATGTGATTTTTGAGGACA+TGG | + | chr2_2:69393919-69393938 | Msa0267690:three_prime_UTR | 35.0% |
| GGAATTAAGTTCATCACCTT+TGG | + | chr2_2:69393940-69393959 | Msa0267690:three_prime_UTR | 35.0% | |
| AGAACATACCCTGATTAAGC+AGG | - | chr2_2:69389954-69389973 | None:intergenic | 40.0% | |
| TGTTGCAGGGAAAATTCTTC+AGG | - | chr2_2:69390336-69390355 | None:intergenic | 40.0% | |
| ! | TGAAGAATTTTCCCTGCAAC+AGG | + | chr2_2:69390335-69390354 | Msa0267690:intron | 40.0% |
| TTGTCTTCAACTTCCTCCAT+TGG | - | chr2_2:69390790-69390809 | None:intergenic | 40.0% | |
| GAAGCTTCCATCAAATCACT+AGG | + | chr2_2:69390910-69390929 | Msa0267690:CDS | 40.0% | |
| AAGTTCAGAATCAGCAGCTA+TGG | - | chr2_2:69391121-69391140 | None:intergenic | 40.0% | |
| GCTTCAACTGTTACTGCTAA+CGG | + | chr2_2:69391168-69391187 | Msa0267690:CDS | 40.0% | |
| TACATGAACTTCAGCATCTG+AGG | - | chr2_2:69391424-69391443 | None:intergenic | 40.0% | |
| TGTAACAGAACAAAGTCACC+AGG | + | chr2_2:69391440-69391459 | Msa0267690:CDS | 40.0% | |
| TGTTCAGAATCTGTAACCAC+TGG | - | chr2_2:69391468-69391487 | None:intergenic | 40.0% | |
| AAGATTCCTGATGTTGCTGT+TGG | + | chr2_2:69391639-69391658 | Msa0267690:CDS | 40.0% | |
| AGCTCCATTTGAATCTGTCA+AGG | + | chr2_2:69391725-69391744 | Msa0267690:CDS | 40.0% | |
| GCTTCCTTGACAGATTCAAA+TGG | - | chr2_2:69391732-69391751 | None:intergenic | 40.0% | |
| !! | GAAGCTGTTTCTAAGTTTGG+AGG | + | chr2_2:69391747-69391766 | Msa0267690:CDS | 40.0% |
| ! | TGGAGGAATTGTTGATTGGA+AGG | + | chr2_2:69391764-69391783 | Msa0267690:CDS | 40.0% |
| AACTAAAACTGAGCCTAGAG+AGG | + | chr2_2:69392070-69392089 | Msa0267690:CDS | 40.0% | |
| ACTAAAACTGAGCCTAGAGA+GGG | + | chr2_2:69392071-69392090 | Msa0267690:CDS | 40.0% | |
| AAAGCTCAGAGTGGAAGAAA+TGG | + | chr2_2:69392137-69392156 | Msa0267690:CDS | 40.0% | |
| CACCGATGTTAACTCTGTAA+TGG | - | chr2_2:69392238-69392257 | None:intergenic | 40.0% | |
| GATTGCCACAAAAGAGTCTT+TGG | + | chr2_2:69392395-69392414 | Msa0267690:CDS | 40.0% | |
| ATCAGCACATTCTGCACATA+TGG | + | chr2_2:69392419-69392438 | Msa0267690:CDS | 40.0% | |
| GAAGCAGAAGAACACAGAAT+AGG | + | chr2_2:69392441-69392460 | Msa0267690:CDS | 40.0% | |
| ACACAGAATAGGAACAGTCA+TGG | + | chr2_2:69392452-69392471 | Msa0267690:CDS | 40.0% | |
| AAGATTCTCTCAATTGGGAG+AGG | + | chr2_2:69392484-69392503 | Msa0267690:CDS | 40.0% | |
| AGATTCTCTCAATTGGGAGA+GGG | + | chr2_2:69392485-69392504 | Msa0267690:CDS | 40.0% | |
| CATAGAGAAAGCTACTTCTG+AGG | + | chr2_2:69392767-69392786 | Msa0267690:CDS | 40.0% | |
| AATCATTGCTTGCCTCGATT+AGG | + | chr2_2:69392844-69392863 | Msa0267690:CDS | 40.0% | |
| ACTATGCATTGTACTAGCAC+CGG | - | chr2_2:69393102-69393121 | None:intergenic | 40.0% | |
| AGCCAATTCGAGAATTGCAA+CGG | + | chr2_2:69393316-69393335 | Msa0267690:CDS | 40.0% | |
| GGAGACTGAATTGAAAACCA+TGG | + | chr2_2:69393364-69393383 | Msa0267690:CDS | 40.0% | |
| CACTTCATTCAACTTCTCCA+TGG | - | chr2_2:69393384-69393403 | None:intergenic | 40.0% | |
| TGGATAAATCTGAGAAGGCA+AGG | + | chr2_2:69393447-69393466 | Msa0267690:CDS | 40.0% | |
| GGATAAATCTGAGAAGGCAA+GGG | + | chr2_2:69393448-69393467 | Msa0267690:CDS | 40.0% | |
| AAGGCAAGGGAAGGAAAATT+AGG | + | chr2_2:69393461-69393480 | Msa0267690:CDS | 40.0% | |
| GTTTGCATGACCATAAGACT+TGG | - | chr2_2:69393642-69393661 | None:intergenic | 40.0% | |
| CAATGAAAATGGATCCTCAC+CGG | + | chr2_2:69393661-69393680 | Msa0267690:CDS | 40.0% | |
| AAAGCACATCCAACTCATTC+AGG | + | chr2_2:69393752-69393771 | Msa0267690:CDS | 40.0% | |
| AAGCACATCCAACTCATTCA+GGG | + | chr2_2:69393753-69393772 | Msa0267690:CDS | 40.0% | |
| GACATGCAAAGAGTGGACAA+GGG | - | chr2_2:69390089-69390108 | None:intergenic | 45.0% | |
| CAACATGGACATGCAAAGAG+TGG | - | chr2_2:69390096-69390115 | None:intergenic | 45.0% | |
| TTGAGATGTCTCCTGTTGCA+GGG | - | chr2_2:69390349-69390368 | None:intergenic | 45.0% | |
| TCAACATTTCCTGAGGAGGT+TGG | - | chr2_2:69390814-69390833 | None:intergenic | 45.0% | |
| TGGTTCAACATTTCCTGAGG+AGG | - | chr2_2:69390818-69390837 | None:intergenic | 45.0% | |
| ! | GGGGTATCTGCTAGTGAATT+TGG | - | chr2_2:69390838-69390857 | None:intergenic | 45.0% |
| GATTTGCAGACTGACCCTAA+AGG | + | chr2_2:69391243-69391262 | Msa0267690:CDS | 45.0% | |
| ! | AACTTCAGCATCTGAGGTTG+AGG | - | chr2_2:69391418-69391437 | None:intergenic | 45.0% |
| !! | AATCTGTAACCACTGGTTCC+TGG | - | chr2_2:69391461-69391480 | None:intergenic | 45.0% |
| GTGAACATGCATAAGGATGG+TGG | + | chr2_2:69391507-69391526 | Msa0267690:CDS | 45.0% | |
| ! | ATTCCTGATGTTGCTGTTGG+AGG | + | chr2_2:69391642-69391661 | Msa0267690:CDS | 45.0% |
| TCCGGAGTACAGGAAAAGAT+CGG | + | chr2_2:69391981-69392000 | Msa0267690:CDS | 45.0% | |
| ! | TCCGATCTTTTCCTGTACTC+CGG | - | chr2_2:69391985-69392004 | None:intergenic | 45.0% |
| ! | TGTCAAGCTCCTGAAGTACT+TGG | - | chr2_2:69392029-69392048 | None:intergenic | 45.0% |
| !! | AAACCGAAGAGCATCAAGCA+AGG | + | chr2_2:69392097-69392116 | Msa0267690:CDS | 45.0% |
| TTGCCTTGCTTGATGCTCTT+CGG | - | chr2_2:69392103-69392122 | None:intergenic | 45.0% | |
| AGAACTTGCAAAGCTCAGAG+TGG | + | chr2_2:69392128-69392147 | Msa0267690:CDS | 45.0% | |
| AGAGTGGAAGAAATGGAGCA+AGG | + | chr2_2:69392144-69392163 | Msa0267690:CDS | 45.0% | |
| TATTGCCGAAGATTCCAGTG+TGG | + | chr2_2:69392167-69392186 | Msa0267690:CDS | 45.0% | |
| CTTCATCATCGTCTCCTTCT+TGG | - | chr2_2:69392656-69392675 | None:intergenic | 45.0% | |
| CAAGAAGGAGACGATGATGA+AGG | + | chr2_2:69392654-69392673 | Msa0267690:CDS | 45.0% | |
| CGATGATGAAGGAGTCTCAA+AGG | + | chr2_2:69392665-69392684 | Msa0267690:CDS | 45.0% | |
| AATGCAAGCAGCAGTTGAGT+CGG | + | chr2_2:69392713-69392732 | Msa0267690:CDS | 45.0% | |
| GATTAGGCAAAGAGAGGGAA+TGG | + | chr2_2:69392860-69392879 | Msa0267690:CDS | 45.0% | |
| GATAGAGGCAACTGTAATCG+AGG | - | chr2_2:69392886-69392905 | None:intergenic | 45.0% | |
| ATTCAGCTCGACTTCGATAG+AGG | - | chr2_2:69392901-69392920 | None:intergenic | 45.0% | |
| GACGCTTCTTGAAGCTTCTT+TGG | - | chr2_2:69392993-69393012 | None:intergenic | 45.0% | |
| AGCGTCTGAAGAGGCAAATA+TGG | + | chr2_2:69393007-69393026 | Msa0267690:CDS | 45.0% | |
| ! | CGAAGTGCTTAGGAGAGTAA+AGG | + | chr2_2:69393055-69393074 | Msa0267690:CDS | 45.0% |
| AGTGCTTAGGAGAGTAAAGG+AGG | + | chr2_2:69393058-69393077 | Msa0267690:CDS | 45.0% | |
| AAGCTGCAAGAGCTTCTGAA+AGG | + | chr2_2:69393150-69393169 | Msa0267690:CDS | 45.0% | |
| ! | TGCAAGAGCTTCTGAAAGGT+TGG | + | chr2_2:69393154-69393173 | Msa0267690:CDS | 45.0% |
| TGCCGTTGCAATTCTCGAAT+TGG | - | chr2_2:69393321-69393340 | None:intergenic | 45.0% | |
| AAATCTGAGAAGGCAAGGGA+AGG | + | chr2_2:69393452-69393471 | Msa0267690:CDS | 45.0% | |
| AGAAAGTGGAGAGCAGAACA+TGG | + | chr2_2:69393500-69393519 | Msa0267690:CDS | 45.0% | |
| CGGAGAAAAGCCAGTGAAAT+AGG | + | chr2_2:69393527-69393546 | Msa0267690:CDS | 45.0% | |
| AGTGACTACCCTGAATGAGT+TGG | - | chr2_2:69393764-69393783 | None:intergenic | 45.0% | |
| TGCAAAGAGTGGACAAGGGA+AGG | - | chr2_2:69390085-69390104 | None:intergenic | 50.0% | |
| GGACATGCAAAGAGTGGACA+AGG | - | chr2_2:69390090-69390109 | None:intergenic | 50.0% | |
| GTTGAGATGTCTCCTGTTGC+AGG | - | chr2_2:69390350-69390369 | None:intergenic | 50.0% | |
| GAAGACAAACCAACCTCCTC+AGG | + | chr2_2:69390802-69390821 | Msa0267690:CDS | 50.0% | |
| AATCAGCAGCTATGGCTCCT+AGG | - | chr2_2:69391113-69391132 | None:intergenic | 50.0% | |
| ACAAAGTCACCAGGAACCAG+TGG | + | chr2_2:69391449-69391468 | Msa0267690:CDS | 50.0% | |
| ACACCTCCAACAGCAACATC+AGG | - | chr2_2:69391648-69391667 | None:intergenic | 50.0% | |
| TCATCGAATGATAGCCGTCG+AGG | + | chr2_2:69391788-69391807 | Msa0267690:CDS | 50.0% | |
| GGAGTACAGGAAAAGATCGG+AGG | + | chr2_2:69391984-69392003 | Msa0267690:CDS | 50.0% | |
| AACTCGAGGTTGCCAAAGCA+AGG | + | chr2_2:69392202-69392221 | Msa0267690:CDS | 50.0% | |
| GGCACTCGTATACCTTGCTT+TGG | - | chr2_2:69392217-69392236 | None:intergenic | 50.0% | |
| CGAGTTAGATTCGTTGCGTG+TGG | + | chr2_2:69392263-69392282 | Msa0267690:CDS | 50.0% | |
| CGATGCAGCAACAGCATCTT+CGG | - | chr2_2:69392334-69392353 | None:intergenic | 50.0% | |
| AGGAGTCTCAAAGGAGCAAC+TGG | + | chr2_2:69392674-69392693 | Msa0267690:CDS | 50.0% | |
| AGCAGTTGAGTCGGCCAAAA+AGG | + | chr2_2:69392722-69392741 | Msa0267690:CDS | 50.0% | |
| TGCCTCGATTAGGCAAAGAG+AGG | + | chr2_2:69392854-69392873 | Msa0267690:CDS | 50.0% | |
| GCCTCGATTAGGCAAAGAGA+GGG | + | chr2_2:69392855-69392874 | Msa0267690:CDS | 50.0% | |
| TCCCTCTCTTTGCCTAATCG+AGG | - | chr2_2:69392859-69392878 | None:intergenic | 50.0% | |
| GAAGCTTCTTTGGCAGCTCA+AGG | - | chr2_2:69392983-69393002 | None:intergenic | 50.0% | |
| !! | GCTTCAAGAAGCGTCTGAAG+AGG | + | chr2_2:69392998-69393017 | Msa0267690:CDS | 50.0% |
| AGCTTCTCGAGCAAGCAAGT+TGG | - | chr2_2:69393033-69393052 | None:intergenic | 50.0% | |
| ! | GAGAAGCTTGCGAAGTGCTT+AGG | + | chr2_2:69393045-69393064 | Msa0267690:CDS | 50.0% |
| GAAGCAGAACAAGCCAAAGC+CGG | + | chr2_2:69393080-69393099 | Msa0267690:CDS | 50.0% | |
| !! | CATTGTACTAGCACCGGCTT+TGG | - | chr2_2:69393096-69393115 | None:intergenic | 50.0% |
| AGCATTGCAAGAGAGCGAGT+CGG | + | chr2_2:69393193-69393212 | Msa0267690:CDS | 50.0% | |
| GGAGAGCAGAACATGGACAA+CGG | + | chr2_2:69393507-69393526 | Msa0267690:CDS | 50.0% | |
| TCCTCACCGGATGTGAAAAG+TGG | + | chr2_2:69393674-69393693 | Msa0267690:CDS | 50.0% | |
| !! | TCCACTTTTCACATCCGGTG+AGG | - | chr2_2:69393678-69393697 | None:intergenic | 50.0% |
| ACGAGGAGATTCCGGAGTAC+AGG | + | chr2_2:69391971-69391990 | Msa0267690:CDS | 55.0% | |
| ! | CTTCGGTTTGTGCCCTCTCT+AGG | - | chr2_2:69392086-69392105 | None:intergenic | 55.0% |
| GGCTGCCACACTGGAATCTT+CGG | - | chr2_2:69392175-69392194 | None:intergenic | 55.0% | |
| AGATTCCAGTGTGGCAGCCA+AGG | + | chr2_2:69392176-69392195 | Msa0267690:CDS | 55.0% | |
| CAGCAGCTATGGCTCCTAGG+TGG | - | chr2_2:69391110-69391129 | None:intergenic | 60.0% | |
| TTGCGCCTTGGCTGCCACAC+TGG | - | chr2_2:69392184-69392203 | None:intergenic | 65.0% | |
| ! | GGCAACCTCGAGTTGCGCCT+TGG | - | chr2_2:69392196-69392215 | None:intergenic | 65.0% |
| GGCAGCCAAGGCGCAACTCG+AGG | + | chr2_2:69392188-69392207 | Msa0267690:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 69389900 | 69394024 | 69389900 | ID=Msa0267690;Name=Msa0267690 |
| chr2_2 | mRNA | 69389900 | 69394024 | 69389900 | ID=Msa0267690-mRNA-1;Parent=Msa0267690;Name=Msa0267690-mRNA-1;_AED=0.01;_eAED=0.01;_QI=198|1|0.8|1|0.5|0.4|5|246|919 |
| chr2_2 | exon | 69389900 | 69389964 | 69389900 | ID=Msa0267690-mRNA-1:exon:22124;Parent=Msa0267690-mRNA-1 |
| chr2_2 | exon | 69390340 | 69390439 | 69390340 | ID=Msa0267690-mRNA-1:exon:22125;Parent=Msa0267690-mRNA-1 |
| chr2_2 | exon | 69390757 | 69391264 | 69390757 | ID=Msa0267690-mRNA-1:exon:22126;Parent=Msa0267690-mRNA-1 |
| chr2_2 | exon | 69391370 | 69391809 | 69391370 | ID=Msa0267690-mRNA-1:exon:22127;Parent=Msa0267690-mRNA-1 |
| chr2_2 | exon | 69391934 | 69394024 | 69391934 | ID=Msa0267690-mRNA-1:exon:22128;Parent=Msa0267690-mRNA-1 |
| chr2_2 | five_prime_UTR | 69389900 | 69389964 | 69389900 | ID=Msa0267690-mRNA-1:five_prime_utr;Parent=Msa0267690-mRNA-1 |
| chr2_2 | five_prime_UTR | 69390340 | 69390439 | 69390340 | ID=Msa0267690-mRNA-1:five_prime_utr;Parent=Msa0267690-mRNA-1 |
| chr2_2 | five_prime_UTR | 69390757 | 69390789 | 69390757 | ID=Msa0267690-mRNA-1:five_prime_utr;Parent=Msa0267690-mRNA-1 |
| chr2_2 | CDS | 69390790 | 69391264 | 69390790 | ID=Msa0267690-mRNA-1:cds;Parent=Msa0267690-mRNA-1 |
| chr2_2 | CDS | 69391370 | 69391809 | 69391370 | ID=Msa0267690-mRNA-1:cds;Parent=Msa0267690-mRNA-1 |
| chr2_2 | CDS | 69391934 | 69393778 | 69391934 | ID=Msa0267690-mRNA-1:cds;Parent=Msa0267690-mRNA-1 |
| chr2_2 | three_prime_UTR | 69393779 | 69394024 | 69393779 | ID=Msa0267690-mRNA-1:three_prime_utr;Parent=Msa0267690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
