Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930740 | XP_003630969.3 | 98.990 | 198 | 2 | 0 | 1 | 198 | 1 | 198 | 3.23e-141 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930740 | sp|O22850|GPX3_ARATH | 67.568 | 185 | 60 | 0 | 14 | 198 | 22 | 206 | 1.02e-89 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa0930740 | 0.967777 | 9.540711e-128 | -8.615850e-47 |
| Msa0004480 | Msa0930740 | 0.841815 | 3.779572e-58 | -8.615850e-47 |
| Msa0004660 | Msa0930740 | 0.803426 | 3.505198e-49 | -8.615850e-47 |
| Msa0051960 | Msa0930740 | 0.825960 | 3.524918e-54 | -8.615850e-47 |
| Msa0052780 | Msa0930740 | 0.825783 | 3.883032e-54 | -8.615850e-47 |
| Msa0059950 | Msa0930740 | 0.806223 | 9.128233e-50 | -8.615850e-47 |
| Msa0061220 | Msa0930740 | 0.817372 | 3.412250e-52 | -8.615850e-47 |
| Msa0077370 | Msa0930740 | 0.862528 | 4.754941e-64 | -8.615850e-47 |
| Msa0077380 | Msa0930740 | 0.803683 | 3.101165e-49 | -8.615850e-47 |
| Msa0082420 | Msa0930740 | 0.822006 | 2.983705e-53 | -8.615850e-47 |
| Msa0086190 | Msa0930740 | 0.800210 | 1.603807e-48 | -8.615850e-47 |
| Msa0090380 | Msa0930740 | 0.840395 | 8.921753e-58 | -8.615850e-47 |
| Msa0097570 | Msa0930740 | 0.836281 | 1.025970e-56 | -8.615850e-47 |
| Msa0101960 | Msa0930740 | 0.830440 | 2.933144e-55 | -8.615850e-47 |
| Msa0117520 | Msa0930740 | 0.804522 | 2.074328e-49 | -8.615850e-47 |
| Msa0610830 | Msa0930740 | 0.877357 | 6.707744e-69 | -8.615850e-47 |
| Msa0611060 | Msa0930740 | 0.816335 | 5.831946e-52 | -8.615850e-47 |
| Msa0631320 | Msa0930740 | 0.903663 | 2.748351e-79 | -8.615850e-47 |
| Msa0637930 | Msa0930740 | -0.802526 | 5.380709e-49 | -8.615850e-47 |
| Msa0641130 | Msa0930740 | 0.822292 | 2.560964e-53 | -8.615850e-47 |
| Msa0654900 | Msa0930740 | 0.809261 | 2.065096e-50 | -8.615850e-47 |
| Msa0669700 | Msa0930740 | 0.819227 | 1.297221e-52 | -8.615850e-47 |
| Msa0679670 | Msa0930740 | 0.835281 | 1.838844e-56 | -8.615850e-47 |
| Msa0693520 | Msa0930740 | 0.822623 | 2.145770e-53 | -8.615850e-47 |
| Msa0693750 | Msa0930740 | 0.805926 | 1.054293e-49 | -8.615850e-47 |
| Msa0698450 | Msa0930740 | 0.805642 | 1.209423e-49 | -8.615850e-47 |
| Msa0698460 | Msa0930740 | 0.815975 | 7.018876e-52 | -8.615850e-47 |
| Msa0703810 | Msa0930740 | 0.829254 | 5.705110e-55 | -8.615850e-47 |
| Msa0713060 | Msa0930740 | 0.869684 | 2.574148e-66 | -8.615850e-47 |
| Msa0744640 | Msa0930740 | 0.875656 | 2.593765e-68 | -8.615850e-47 |
| Msa0769720 | Msa0930740 | 0.801289 | 9.660829e-49 | -8.615850e-47 |
| Msa0769970 | Msa0930740 | 0.819809 | 9.553857e-53 | -8.615850e-47 |
| Msa0795730 | Msa0930740 | 0.819956 | 8.842841e-53 | -8.615850e-47 |
| Msa0802240 | Msa0930740 | 0.833436 | 5.337885e-56 | -8.615850e-47 |
| Msa0816630 | Msa0930740 | 0.805574 | 1.250261e-49 | -8.615850e-47 |
| Msa0832950 | Msa0930740 | 0.804256 | 2.357471e-49 | -8.615850e-47 |
| Msa0833270 | Msa0930740 | 0.806443 | 8.206455e-50 | -8.615850e-47 |
| Msa0841730 | Msa0930740 | 0.874668 | 5.642436e-68 | -8.615850e-47 |
| Msa0125320 | Msa0930740 | 0.806827 | 6.809307e-50 | -8.615850e-47 |
| Msa0137860 | Msa0930740 | 0.826767 | 2.264674e-54 | -8.615850e-47 |
| Msa0138900 | Msa0930740 | 0.839229 | 1.795678e-57 | -8.615850e-47 |
| Msa0155890 | Msa0930740 | 0.820111 | 8.153106e-53 | -8.615850e-47 |
| Msa0176260 | Msa0930740 | 0.814226 | 1.716495e-51 | -8.615850e-47 |
| Msa0196880 | Msa0930740 | 0.811045 | 8.519707e-51 | -8.615850e-47 |
| Msa0213540 | Msa0930740 | 0.821416 | 4.084545e-53 | -8.615850e-47 |
| Msa0233970 | Msa0930740 | 0.830416 | 2.973800e-55 | -8.615850e-47 |
| Msa0234410 | Msa0930740 | -0.810022 | 1.417093e-50 | -8.615850e-47 |
| Msa0365950 | Msa0930740 | 0.802570 | 5.269234e-49 | -8.615850e-47 |
| Msa0367540 | Msa0930740 | -0.812558 | 3.991974e-51 | -8.615850e-47 |
| Msa0367760 | Msa0930740 | 0.807835 | 4.163610e-50 | -8.615850e-47 |
| Msa0370580 | Msa0930740 | -0.804385 | 2.215887e-49 | -8.615850e-47 |
| Msa0388730 | Msa0930740 | 0.808418 | 3.128100e-50 | -8.615850e-47 |
| Msa0389210 | Msa0930740 | 0.823311 | 1.483233e-53 | -8.615850e-47 |
| Msa0412260 | Msa0930740 | 0.812766 | 3.594316e-51 | -8.615850e-47 |
| Msa0413870 | Msa0930740 | 0.803815 | 2.911954e-49 | -8.615850e-47 |
| Msa0431980 | Msa0930740 | 0.812472 | 4.167817e-51 | -8.615850e-47 |
| Msa0456770 | Msa0930740 | 0.826169 | 3.143932e-54 | -8.615850e-47 |
| Msa0481400 | Msa0930740 | 0.830922 | 2.235355e-55 | -8.615850e-47 |
| Msa0259680 | Msa0930740 | 0.804419 | 2.180022e-49 | -8.615850e-47 |
| Msa0264680 | Msa0930740 | 0.841661 | 4.150376e-58 | -8.615850e-47 |
| Msa0267690 | Msa0930740 | 0.821569 | 3.766735e-53 | -8.615850e-47 |
| Msa0272400 | Msa0930740 | 0.840134 | 1.043962e-57 | -8.615850e-47 |
| Msa0276430 | Msa0930740 | 0.865839 | 4.413512e-65 | -8.615850e-47 |
| Msa0293720 | Msa0930740 | 0.806800 | 6.899166e-50 | -8.615850e-47 |
| Msa0302730 | Msa0930740 | 0.841713 | 4.022386e-58 | -8.615850e-47 |
| Msa0306310 | Msa0930740 | 0.832245 | 1.055083e-55 | -8.615850e-47 |
| Msa0310720 | Msa0930740 | -0.802574 | 5.259830e-49 | -8.615850e-47 |
| Msa0310730 | Msa0930740 | -0.814775 | 1.297170e-51 | -8.615850e-47 |
| Msa0312590 | Msa0930740 | 0.834322 | 3.204375e-56 | -8.615850e-47 |
| Msa0316470 | Msa0930740 | 0.874426 | 6.818008e-68 | -8.615850e-47 |
| Msa0319020 | Msa0930740 | 0.808258 | 3.382865e-50 | -8.615850e-47 |
| Msa0320230 | Msa0930740 | 0.810510 | 1.112302e-50 | -8.615850e-47 |
| Msa0331020 | Msa0930740 | 0.842977 | 1.859291e-58 | -8.615850e-47 |
| Msa0341480 | Msa0930740 | 0.804039 | 2.616052e-49 | -8.615850e-47 |
| Msa0484630 | Msa0930740 | 0.804604 | 1.994592e-49 | -8.615850e-47 |
| Msa0484640 | Msa0930740 | 0.801785 | 7.641649e-49 | -8.615850e-47 |
| Msa0490320 | Msa0930740 | 0.819745 | 9.881077e-53 | -8.615850e-47 |
| Msa0520850 | Msa0930740 | 0.819770 | 9.752150e-53 | -8.615850e-47 |
| Msa0528990 | Msa0930740 | 0.843332 | 1.495548e-58 | -8.615850e-47 |
| Msa0529000 | Msa0930740 | 0.861674 | 8.690857e-64 | -8.615850e-47 |
| Msa0534610 | Msa0930740 | 0.817718 | 2.850863e-52 | -8.615850e-47 |
| Msa0534870 | Msa0930740 | 0.902267 | 1.153801e-78 | -8.615850e-47 |
| Msa0545050 | Msa0930740 | 0.829285 | 5.606409e-55 | -8.615850e-47 |
| Msa0550550 | Msa0930740 | 0.806736 | 7.116746e-50 | -8.615850e-47 |
| Msa0561360 | Msa0930740 | 0.815103 | 1.097151e-51 | -8.615850e-47 |
| Msa0567370 | Msa0930740 | 0.825970 | 3.505542e-54 | -8.615850e-47 |
| Msa0567480 | Msa0930740 | 0.813690 | 2.253073e-51 | -8.615850e-47 |
| Msa0567520 | Msa0930740 | 0.816545 | 5.231951e-52 | -8.615850e-47 |
| Msa0570700 | Msa0930740 | 0.876039 | 1.916140e-68 | -8.615850e-47 |
| Msa0574930 | Msa0930740 | 0.959364 | 2.324379e-117 | -8.615850e-47 |
| Msa0576560 | Msa0930740 | 0.844380 | 7.835210e-59 | -8.615850e-47 |
| Msa0578410 | Msa0930740 | 0.805837 | 1.100722e-49 | -8.615850e-47 |
| Msa0578460 | Msa0930740 | 0.803302 | 3.719988e-49 | -8.615850e-47 |
| Msa0584580 | Msa0930740 | 0.808695 | 2.729610e-50 | -8.615850e-47 |
| Msa0584600 | Msa0930740 | 0.810724 | 9.996598e-51 | -8.615850e-47 |
| Msa0590810 | Msa0930740 | 0.806947 | 6.421517e-50 | -8.615850e-47 |
| Msa0600590 | Msa0930740 | 0.846876 | 1.648934e-59 | -8.615850e-47 |
| Msa0852790 | Msa0930740 | 0.804865 | 1.759256e-49 | -8.615850e-47 |
| Msa0863990 | Msa0930740 | 0.806538 | 7.836387e-50 | -8.615850e-47 |
| Msa0870510 | Msa0930740 | 0.854765 | 9.900229e-62 | -8.615850e-47 |
| Msa0881530 | Msa0930740 | -0.834033 | 3.787794e-56 | -8.615850e-47 |
| Msa0930740 | Msa0945130 | 0.836713 | 7.965908e-57 | -8.615850e-47 |
| Msa0930740 | Msa0982090 | -0.827098 | 1.887198e-54 | -8.615850e-47 |
| Msa0930740 | Msa1000800 | 0.813234 | 2.837718e-51 | -8.615850e-47 |
| Msa0930740 | Msa1016960 | 0.817610 | 3.016814e-52 | -8.615850e-47 |
| Msa0930740 | Msa1023310 | 0.845934 | 2.979565e-59 | -8.615850e-47 |
| Msa0930740 | Msa1044510 | 0.829798 | 4.208649e-55 | -8.615850e-47 |
| Msa0930740 | Msa1058200 | 0.806874 | 6.655483e-50 | -8.615850e-47 |
| Msa0930740 | Msa1059470 | 0.815356 | 9.640789e-52 | -8.615850e-47 |
| Msa0930740 | Msa1062040 | 0.879616 | 1.077653e-69 | -8.615850e-47 |
| Msa0930740 | Msa1070540 | 0.806702 | 7.234521e-50 | -8.615850e-47 |
| Msa0930740 | Msa1074200 | 0.800590 | 1.341881e-48 | -8.615850e-47 |
| Msa0930740 | Msa1082360 | 0.814047 | 1.879140e-51 | -8.615850e-47 |
| Msa0930740 | Msa1082520 | 0.803512 | 3.364811e-49 | -8.615850e-47 |
| Msa0930740 | Msa1101240 | 0.804219 | 2.399124e-49 | -8.615850e-47 |
| Msa0930740 | Msa1107200 | 0.863139 | 3.079852e-64 | -8.615850e-47 |
| Msa0930740 | Msa1109810 | 0.804209 | 2.411243e-49 | -8.615850e-47 |
| Msa0930740 | Msa1113100 | 0.813821 | 2.108550e-51 | -8.615850e-47 |
| Msa0930740 | Msa1131430 | 0.809478 | 1.854970e-50 | -8.615850e-47 |
| Msa0930740 | Msa1131790 | 0.815539 | 8.780265e-52 | -8.615850e-47 |
| Msa0930740 | Msa1133700 | 0.803168 | 3.965264e-49 | -8.615850e-47 |
| Msa0930740 | Msa1150780 | 0.862194 | 6.023703e-64 | -8.615850e-47 |
| Msa0930740 | Msa1159170 | 0.818812 | 1.611973e-52 | -8.615850e-47 |
| Msa0930740 | Msa1165430 | 0.801799 | 7.591769e-49 | -8.615850e-47 |
| Msa0930740 | Msa1173150 | 0.834965 | 2.209377e-56 | -8.615850e-47 |
| Msa0930740 | Msa1176170 | 0.826909 | 2.094102e-54 | -8.615850e-47 |
| Msa0930740 | Msa1176380 | 0.810113 | 1.354538e-50 | -8.615850e-47 |
| Msa0930740 | Msa1176720 | 0.807717 | 4.410915e-50 | -8.615850e-47 |
| Msa0930740 | Msa1180720 | 0.843781 | 1.134654e-58 | -8.615850e-47 |
| Msa0930740 | Msa1181060 | 0.812019 | 5.233907e-51 | -8.615850e-47 |
| Msa0930740 | Msa1183140 | 0.822636 | 2.130306e-53 | -8.615850e-47 |
| Msa0930740 | Msa1187490 | 0.807055 | 6.094440e-50 | -8.615850e-47 |
| Msa0930740 | Msa1191440 | 0.858113 | 1.029147e-62 | -8.615850e-47 |
| Msa0930740 | Msa1199870 | 0.812995 | 3.202493e-51 | -8.615850e-47 |
| Msa0930740 | Msa1218160 | 0.865994 | 3.942377e-65 | -8.615850e-47 |
| Msa0930740 | Msa1225580 | 0.851598 | 7.996819e-61 | -8.615850e-47 |
| Msa0930740 | Msa1229480 | 0.811946 | 5.427511e-51 | -8.615850e-47 |
| Msa0930740 | Msa1231190 | 0.839396 | 1.624489e-57 | -8.615850e-47 |
| Msa0930740 | Msa1231710 | 0.835742 | 1.405933e-56 | -8.615850e-47 |
| Msa0930740 | Msa1236470 | 0.830536 | 2.778979e-55 | -8.615850e-47 |
| Msa0930740 | Msa1238680 | 0.827815 | 1.270280e-54 | -8.615850e-47 |
| Msa0930740 | Msa1246780 | 0.824301 | 8.693506e-54 | -8.615850e-47 |
| Msa0930740 | Msa1252810 | 0.868211 | 7.729526e-66 | -8.615850e-47 |
| Msa0930740 | Msa1269060 | 0.812173 | 4.843163e-51 | -8.615850e-47 |
| Msa0930740 | Msa1270050 | 0.865318 | 6.440042e-65 | -8.615850e-47 |
| Msa0930740 | Msa1272010 | 0.805206 | 1.492680e-49 | -8.615850e-47 |
| Msa0930740 | Msa1274380 | 0.824995 | 5.967001e-54 | -8.615850e-47 |
| Msa0930740 | Msa1277410 | 0.859992 | 2.816253e-63 | -8.615850e-47 |
| Msa0930740 | Msa1277780 | 0.811824 | 5.771148e-51 | -8.615850e-47 |
| Msa0930740 | Msa1286210 | 0.818186 | 2.235937e-52 | -8.615850e-47 |
| Msa0930740 | Msa1307160 | 0.865363 | 6.236102e-65 | -8.615850e-47 |
| Msa0930740 | Msa1307180 | 0.800258 | 1.568338e-48 | -8.615850e-47 |
| Msa0930740 | Msa1309760 | 0.815730 | 7.960068e-52 | -8.615850e-47 |
| Msa0930740 | Msa1312440 | 0.825488 | 4.560452e-54 | -8.615850e-47 |
| Msa0930740 | Msa1316360 | 0.814896 | 1.219537e-51 | -8.615850e-47 |
| Msa0930740 | Msa1316460 | 0.804280 | 2.330378e-49 | -8.615850e-47 |
| Msa0930740 | Msa1339930 | -0.816177 | 6.324864e-52 | -8.615850e-47 |
| Msa0930740 | Msa1355510 | 0.841055 | 5.990406e-58 | -8.615850e-47 |
| Msa0930740 | Msa1367790 | 0.817835 | 2.683809e-52 | -8.615850e-47 |
| Msa0930740 | Msa1368710 | 0.811709 | 6.113944e-51 | -8.615850e-47 |
| Msa0930740 | Msa1374830 | 0.806899 | 6.574719e-50 | -8.615850e-47 |
| Msa0930740 | Msa1382380 | -0.828078 | 1.097989e-54 | -8.615850e-47 |
| Msa0930740 | Msa1386000 | 0.841878 | 3.638532e-58 | -8.615850e-47 |
| Msa0930740 | Msa1403690 | 0.811604 | 6.441454e-51 | -8.615850e-47 |
| Msa0930740 | Msa1404050 | 0.803312 | 3.701283e-49 | -8.615850e-47 |
| Msa0930740 | Msa1405420 | 0.804217 | 2.401941e-49 | -8.615850e-47 |
| Msa0930740 | Msa1407760 | 0.845873 | 3.095680e-59 | -8.615850e-47 |
| Msa0930740 | Msa1415410 | 0.835438 | 1.677903e-56 | -8.615850e-47 |
| Msa0930740 | Msa1433410 | 0.835060 | 2.090818e-56 | -8.615850e-47 |
| Msa0930740 | Msa1435320 | 0.830990 | 2.150662e-55 | -8.615850e-47 |
| Msa0930740 | Msa1437730 | 0.813555 | 2.412092e-51 | -8.615850e-47 |
| Msa0930740 | Msa1443400 | 0.831336 | 1.768643e-55 | -8.615850e-47 |
| Msa0930740 | Msa1443620 | 0.828475 | 8.808989e-55 | -8.615850e-47 |
| Msa0930740 | Msa1448040 | 0.832765 | 7.841619e-56 | -8.615850e-47 |
| Msa0930740 | Msa1465250 | 0.815435 | 9.256867e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930740 | MtrunA17_Chr8g0391921 | 98.990 | 198 | 2 | 0 | 1 | 198 | 28 | 225 | 2.98e-145 | 403 |
| Msa0930740 | MtrunA17_Chr8g0386721 | 71.856 | 167 | 46 | 1 | 32 | 197 | 1 | 167 | 3.46e-87 | 254 |
| Msa0930740 | MtrunA17_Chr1g0150061 | 66.049 | 162 | 55 | 0 | 36 | 197 | 75 | 236 | 1.32e-78 | 234 |
| Msa0930740 | MtrunA17_Chr8g0386731 | 65.823 | 158 | 54 | 0 | 38 | 195 | 12 | 169 | 9.68e-75 | 222 |
| Msa0930740 | MtrunA17_Chr7g0259611 | 59.524 | 168 | 65 | 1 | 28 | 195 | 3 | 167 | 1.97e-72 | 216 |
| Msa0930740 | MtrunA17_Chr5g0397561 | 63.816 | 152 | 54 | 1 | 38 | 188 | 10 | 161 | 2.36e-68 | 206 |
| Msa0930740 | MtrunA17_Chr1g0185791 | 57.233 | 159 | 67 | 1 | 39 | 196 | 11 | 169 | 2.97e-64 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930740 | AT2G43350.2 | 67.568 | 185 | 60 | 0 | 14 | 198 | 22 | 206 | 1.03e-90 | 265 |
| Msa0930740 | AT2G43350.1 | 67.568 | 185 | 60 | 0 | 14 | 198 | 22 | 206 | 1.03e-90 | 265 |
| Msa0930740 | AT2G31570.1 | 73.780 | 164 | 43 | 0 | 32 | 195 | 1 | 164 | 3.39e-89 | 259 |
| Msa0930740 | AT4G11600.1 | 69.412 | 170 | 52 | 0 | 26 | 195 | 59 | 228 | 8.29e-87 | 255 |
| Msa0930740 | AT4G31870.1 | 68.519 | 162 | 51 | 0 | 36 | 197 | 72 | 233 | 1.21e-82 | 245 |
| Msa0930740 | AT2G25080.1 | 56.219 | 201 | 84 | 2 | 1 | 197 | 36 | 236 | 1.62e-78 | 234 |
| Msa0930740 | AT1G63460.1 | 60.479 | 167 | 66 | 0 | 32 | 198 | 1 | 167 | 6.59e-76 | 225 |
| Msa0930740 | AT3G63080.1 | 66.026 | 156 | 53 | 0 | 40 | 195 | 14 | 169 | 4.22e-74 | 221 |
| Msa0930740 | AT2G48150.1 | 62.048 | 166 | 63 | 0 | 33 | 198 | 5 | 170 | 1.89e-73 | 219 |
| Msa0930740 | AT2G48150.2 | 64.583 | 144 | 51 | 0 | 55 | 198 | 1 | 144 | 1.10e-65 | 199 |
| Msa0930740 | AT4G31870.2 | 63.333 | 60 | 22 | 0 | 38 | 97 | 74 | 133 | 1.75e-21 | 87.0 |
Find 62 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTATCCCTAGTTAATTTA+TGG | 0.119023 | 6_2:+79818521 | Msa0930740:three_prime_UTR |
| ACACACAGTTGTTGACTTTC+TGG | 0.139253 | 6_2:+79815511 | Msa0930740:CDS |
| ATGAATGAAGAATAAATAAA+TGG | 0.203109 | 6_2:+79815389 | Msa0930740:five_prime_UTR |
| GATCAGAAAGGAGGAATATT+TGG | 0.230959 | 6_2:+79817579 | Msa0930740:CDS |
| GTCTCTAGACTTTGAAATCT+TGG | 0.241499 | 6_2:+79817177 | Msa0930740:intron |
| ATTTGGTGTTCTCACTTTCT+TGG | 0.273903 | 6_2:+79818596 | Msa0930740:three_prime_UTR |
| AAACCATAAAGTTGCCAAAA+AGG | 0.285705 | 6_2:+79818942 | Msa0930740:three_prime_UTR |
| GACCTTGATCCTTATACTTC+TGG | 0.294629 | 6_2:-79817060 | None:intergenic |
| TTCTTAATATGTTGTGTACT+TGG | 0.314274 | 6_2:+79818553 | Msa0930740:three_prime_UTR |
| TTATTTATTCTTCATTCATA+TGG | 0.314436 | 6_2:-79815385 | None:intergenic |
| AATCTATTCAACGCTTTCAT+AGG | 0.337079 | 6_2:+79818472 | Msa0930740:three_prime_UTR |
| CAGAAACTCATCTTCCAAAA+TGG | 0.340181 | 6_2:+79815581 | Msa0930740:CDS |
| ATACTCTAAAATGATGTATC+AGG | 0.347204 | 6_2:+79818626 | Msa0930740:three_prime_UTR |
| ATCATGCAATAAGAACAATT+TGG | 0.356028 | 6_2:+79818579 | Msa0930740:three_prime_UTR |
| CTGGTTCCTGTCCACGAAAC+TGG | 0.374855 | 6_2:-79817213 | None:intergenic |
| AGTGAAATCGTAGATGGATT+TGG | 0.407313 | 6_2:-79815616 | None:intergenic |
| TGTTCTGTACCAGAAGTATA+AGG | 0.413755 | 6_2:+79817051 | Msa0930740:CDS |
| CAACATATTAAGAATCTTCC+AGG | 0.424766 | 6_2:-79818544 | None:intergenic |
| TATTTATTCTTCATTCATAT+GGG | 0.432672 | 6_2:-79815384 | None:intergenic |
| AGGAAGGGTAAAGTTTGCTT+GGG | 0.434431 | 6_2:+79818962 | Msa0930740:three_prime_UTR |
| AAGGAAGGGTAAAGTTTGCT+TGG | 0.435106 | 6_2:+79818961 | Msa0930740:three_prime_UTR |
| TATTATAGGTTGAAGTCAAT+GGG | 0.436019 | 6_2:+79817523 | Msa0930740:intron |
| TTATTATAGGTTGAAGTCAA+TGG | 0.438351 | 6_2:+79817522 | Msa0930740:intron |
| TGAATGAAGAATAAATAAAT+GGG | 0.447394 | 6_2:+79815390 | Msa0930740:five_prime_UTR |
| CTTGACAGTGAAATCGTAGA+TGG | 0.450016 | 6_2:-79815622 | None:intergenic |
| GTAATCACCTTATCAAAGAC+TGG | 0.452445 | 6_2:-79817289 | None:intergenic |
| TGAATTTCTTCACTAGATCC+TGG | 0.461518 | 6_2:-79817232 | None:intergenic |
| TGAATTCCCAGTCTTTGATA+AGG | 0.466937 | 6_2:+79817282 | Msa0930740:CDS |
| TCTTATAATAATATAAAATA+CGG | 0.468552 | 6_2:+79815459 | Msa0930740:five_prime_UTR |
| TGTGAAATTGATTGATATCA+TGG | 0.476011 | 6_2:+79815488 | Msa0930740:exon |
| TCCCTAGTTAATTTATGGCC+TGG | 0.476360 | 6_2:+79818526 | Msa0930740:three_prime_UTR |
| ATGCAACCAGTTTCGTGGAC+AGG | 0.495715 | 6_2:+79817207 | Msa0930740:CDS |
| TTTCCATGCAACCAGTTTCG+TGG | 0.506265 | 6_2:+79817202 | Msa0930740:CDS |
| TTCCAGGCCATAAATTAACT+AGG | 0.521684 | 6_2:-79818528 | None:intergenic |
| AAGTTCTTAGTAAACAAAGA+AGG | 0.522522 | 6_2:+79817627 | Msa0930740:CDS |
| AAGATGAGTTTCTGCGAAAG+AGG | 0.524256 | 6_2:-79815572 | None:intergenic |
| TACCAGAAGTATAAGGATCA+AGG | 0.527051 | 6_2:+79817058 | Msa0930740:CDS |
| ATTCTTCATTCATATGGGTG+AGG | 0.534175 | 6_2:-79815379 | None:intergenic |
| CAGTTTCGTGGACAGGAACC+AGG | 0.539854 | 6_2:+79817214 | Msa0930740:CDS |
| GGGTGAGGACGGAAAGTTCG+TGG | 0.544382 | 6_2:-79815364 | None:intergenic |
| TTCAGAATGTTGTTTGCACA+AGG | 0.545993 | 6_2:+79817251 | Msa0930740:CDS |
| TTCATTCATATGGGTGAGGA+CGG | 0.547452 | 6_2:-79815375 | None:intergenic |
| CTTAGTAAACAAAGAAGGGA+AGG | 0.552208 | 6_2:+79817632 | Msa0930740:CDS |
| ATACAGAGGAAAGGTTCTGC+TGG | 0.554671 | 6_2:+79815816 | Msa0930740:CDS |
| CATCTACGATTTCACTGTCA+AGG | 0.560391 | 6_2:+79815623 | Msa0930740:CDS |
| AAGTCATCACTCAGAGGGAA+AGG | 0.562776 | 6_2:-79818906 | None:intergenic |
| TGTCCACGAAACTGGTTGCA+TGG | 0.566923 | 6_2:-79817205 | None:intergenic |
| TTCAACGCTTTCATAGGAGA+AGG | 0.573788 | 6_2:+79818478 | Msa0930740:three_prime_UTR |
| GAAATTAAGTTACCATTGTG+AGG | 0.576973 | 6_2:-79815851 | None:intergenic |
| AGTTCTTAGTAAACAAAGAA+GGG | 0.577714 | 6_2:+79817628 | Msa0930740:CDS |
| AAACAAAGAAGGGAAGGTTG+TGG | 0.578941 | 6_2:+79817638 | Msa0930740:CDS |
| AAAGGAGGAATATTTGGAGA+TGG | 0.590133 | 6_2:+79817585 | Msa0930740:CDS |
| TCCAGGCCATAAATTAACTA+GGG | 0.602709 | 6_2:-79818527 | None:intergenic |
| ACTAAACTCATATATTGCAA+AGG | 0.613180 | 6_2:+79817828 | Msa0930740:three_prime_UTR |
| TAATCACCTTATCAAAGACT+GGG | 0.624432 | 6_2:-79817288 | None:intergenic |
| GGTGAGGACGGAAAGTTCGT+GGG | 0.630102 | 6_2:-79815363 | None:intergenic |
| CTACAATTGCAGGATATCAG+TGG | 0.631345 | 6_2:+79815772 | Msa0930740:intron |
| TCTGAGTCAATACAGAGGAA+AGG | 0.631545 | 6_2:+79815807 | Msa0930740:CDS |
| TATTTGGAGATGGTATCAAG+TGG | 0.648183 | 6_2:+79817595 | Msa0930740:CDS |
| CACCGCTCCTCTGAAAATCG+AGG | 0.662646 | 6_2:+79817677 | Msa0930740:CDS |
| TTGTCAATGTTGCCTCACAA+TGG | 0.714648 | 6_2:+79815839 | Msa0930740:CDS |
| GTGAGTCTGAGTCAATACAG+AGG | 0.737687 | 6_2:+79815802 | Msa0930740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAAAATTGTTTTTTGA+TGG | + | chr6_2:79815683-79815702 | Msa0930740:intron | 10.0% |
| !!! | TTAAAAAATTGTTTTTTGAT+GGG | + | chr6_2:79815684-79815703 | Msa0930740:intron | 10.0% |
| !! | AAAATATATATATGAACAAA+CGG | - | chr6_2:79816037-79816056 | None:intergenic | 10.0% |
| !!! | ATGATTGATTATAATTTTTT+TGG | + | chr6_2:79816136-79816155 | Msa0930740:intron | 10.0% |
| !!! | CTTTTTTTTTTTTTTTTTAC+AGG | + | chr6_2:79818441-79818460 | Msa0930740:intron | 10.0% |
| !! | TATTTATTCTTCATTCATAT+GGG | - | chr6_2:79815387-79815406 | None:intergenic | 15.0% |
| !! | TTATTTATTCTTCATTCATA+TGG | - | chr6_2:79815388-79815407 | None:intergenic | 15.0% |
| !! | ATGAATGAAGAATAAATAAA+TGG | + | chr6_2:79815389-79815408 | Msa0930740:five_prime_UTR | 15.0% |
| !! | TGAATGAAGAATAAATAAAT+GGG | + | chr6_2:79815390-79815409 | Msa0930740:five_prime_UTR | 15.0% |
| !! | TTGAAAAAACATCAAAAAAA+TGG | - | chr6_2:79815651-79815670 | None:intergenic | 15.0% |
| !!! | ACTTAATTTCATTCATTTTT+TGG | + | chr6_2:79815864-79815883 | Msa0930740:intron | 15.0% |
| !! | TAAATTAAAATATGTAGATC+AGG | - | chr6_2:79815921-79815940 | None:intergenic | 15.0% |
| !! | GTATATGAATTAAATCATAA+AGG | - | chr6_2:79816013-79816032 | None:intergenic | 15.0% |
| !!! | TTGTATTTTTGTTTTGTTTT+TGG | + | chr6_2:79816718-79816737 | Msa0930740:intron | 15.0% |
| !! | ACAATTATAGTTATAGTTAT+AGG | - | chr6_2:79816975-79816994 | None:intergenic | 15.0% |
| !! | AAAGAATTTACAATAAATCA+TGG | - | chr6_2:79817314-79817333 | None:intergenic | 15.0% |
| !!! | TATCAAATAATGTATGTTTT+AGG | + | chr6_2:79818184-79818203 | Msa0930740:intron | 15.0% |
| !!! | GATTTTTATTCAGTAGTTAA+TGG | + | chr6_2:79816493-79816512 | Msa0930740:intron | 20.0% |
| !!! | ATTTTATGCTGTTTTGTTTT+TGG | + | chr6_2:79816642-79816661 | Msa0930740:intron | 20.0% |
| !!! | AAGTTATTAAGGAAATTTTG+CGG | + | chr6_2:79816760-79816779 | Msa0930740:intron | 20.0% |
| !!! | TATTTTTTTGTTTTTGTCCT+TGG | - | chr6_2:79817097-79817116 | None:intergenic | 20.0% |
| !! | TTTGTAACTTATTTGACATT+TGG | + | chr6_2:79817331-79817350 | Msa0930740:intron | 20.0% |
| !! | AAAAAACAGCATATACAATT+TGG | - | chr6_2:79817414-79817433 | None:intergenic | 20.0% |
| !! | AATATATATGCCAGTTTATA+TGG | + | chr6_2:79817478-79817497 | Msa0930740:intron | 20.0% |
| !! | AAAATGATTTCCATATAAAC+TGG | - | chr6_2:79817491-79817510 | None:intergenic | 20.0% |
| !!! | CATTTTTGTGCTTATATTTT+AGG | + | chr6_2:79817707-79817726 | Msa0930740:intron | 20.0% |
| !!! | AAATGCACATTTTATTCATT+TGG | + | chr6_2:79817954-79817973 | Msa0930740:intron | 20.0% |
| !! | AAAATATTTAGTTGTGGTAA+GGG | - | chr6_2:79818048-79818067 | None:intergenic | 20.0% |
| !! | ATAGTCAAAATATTTAGTTG+TGG | - | chr6_2:79818054-79818073 | None:intergenic | 20.0% |
| !! | TTGTGTTAGAAATTATCATA+TGG | + | chr6_2:79818119-79818138 | Msa0930740:intron | 20.0% |
| !!! | TTTTTTTTTTTTACAGGACA+TGG | + | chr6_2:79818447-79818466 | Msa0930740:intron | 20.0% |
| !! | ATTTATCCCTAGTTAATTTA+TGG | + | chr6_2:79818521-79818540 | Msa0930740:three_prime_UTR | 20.0% |
| !!! | TCATAAAAGTTGTTGATTTT+TGG | + | chr6_2:79818845-79818864 | Msa0930740:intron | 20.0% |
| ! | TGTGAAATTGATTGATATCA+TGG | + | chr6_2:79815488-79815507 | Msa0930740:exon | 25.0% |
| ! | TGAATTAAATCATAAAGGAC+TGG | - | chr6_2:79816008-79816027 | None:intergenic | 25.0% |
| !! | AGTCAAACATTTTTAACGAT+AGG | - | chr6_2:79816085-79816104 | None:intergenic | 25.0% |
| ! | ATTAATCTTTCTCCATTAGT+AGG | + | chr6_2:79816431-79816450 | Msa0930740:intron | 25.0% |
| ! | TTAGAATCTGAACAAATAAC+AGG | - | chr6_2:79816460-79816479 | None:intergenic | 25.0% |
| ! | TGACATGAGATTTAAATCAA+TGG | + | chr6_2:79816535-79816554 | Msa0930740:intron | 25.0% |
| ! | AGTTATAGGACAGAATAAAA+TGG | - | chr6_2:79816961-79816980 | None:intergenic | 25.0% |
| !! | TTATTATAGGTTGAAGTCAA+TGG | + | chr6_2:79817522-79817541 | Msa0930740:intron | 25.0% |
| !! | TATTATAGGTTGAAGTCAAT+GGG | + | chr6_2:79817523-79817542 | Msa0930740:intron | 25.0% |
| ! | AAGTTCTTAGTAAACAAAGA+AGG | + | chr6_2:79817627-79817646 | Msa0930740:CDS | 25.0% |
| ! | AGTTCTTAGTAAACAAAGAA+GGG | + | chr6_2:79817628-79817647 | Msa0930740:CDS | 25.0% |
| !! | TATATGTTTCTTTTTGCAGA+AGG | + | chr6_2:79817774-79817793 | Msa0930740:intron | 25.0% |
| ! | ACTAAACTCATATATTGCAA+AGG | + | chr6_2:79817828-79817847 | Msa0930740:three_prime_UTR | 25.0% |
| ! | TATTGATCATCTAGAAGAAA+AGG | - | chr6_2:79817886-79817905 | None:intergenic | 25.0% |
| ! | CAAAATATTTAGTTGTGGTA+AGG | - | chr6_2:79818049-79818068 | None:intergenic | 25.0% |
| ! | AAAAAAAGAAGGAAGAAGTT+AGG | - | chr6_2:79818429-79818448 | None:intergenic | 25.0% |
| ! | TTCTTAATATGTTGTGTACT+TGG | + | chr6_2:79818553-79818572 | Msa0930740:three_prime_UTR | 25.0% |
| ! | ATCATGCAATAAGAACAATT+TGG | + | chr6_2:79818579-79818598 | Msa0930740:three_prime_UTR | 25.0% |
| !!! | ATACTCTAAAATGATGTATC+AGG | + | chr6_2:79818626-79818645 | Msa0930740:three_prime_UTR | 25.0% |
| !!! | GCACGTTATTTTATTTTACA+TGG | + | chr6_2:79818651-79818670 | Msa0930740:three_prime_UTR | 25.0% |
| !!! | TCTACTTTTCCTTTGAAAAT+TGG | + | chr6_2:79818816-79818835 | Msa0930740:intron | 25.0% |
| !! | GATGGATTTGGATGAATTTT+CGG | - | chr6_2:79815607-79815626 | None:intergenic | 30.0% |
| !!! | ATTGTTTTTTGATGGGTCAA+TGG | + | chr6_2:79815691-79815710 | Msa0930740:intron | 30.0% |
| GAAATTAAGTTACCATTGTG+AGG | - | chr6_2:79815854-79815873 | None:intergenic | 30.0% | |
| GACAGATCATAATTGATTGA+TGG | - | chr6_2:79816063-79816082 | None:intergenic | 30.0% | |
| AATCACACAACATAATCCAT+AGG | - | chr6_2:79816269-79816288 | None:intergenic | 30.0% | |
| TTGATGTTTGAGAAATGTCA+TGG | + | chr6_2:79816320-79816339 | Msa0930740:intron | 30.0% | |
| ! | AAGAATACTTGCACAGTTTT+TGG | + | chr6_2:79816389-79816408 | Msa0930740:intron | 30.0% |
| CATGAGATTTAAATCAATGG+TGG | + | chr6_2:79816538-79816557 | Msa0930740:intron | 30.0% | |
| !!! | TTTGATCTGTTTTTGTTGCT+TGG | + | chr6_2:79816604-79816623 | Msa0930740:intron | 30.0% |
| !!! | TTATGCTGTTTTGTTTTTGG+TGG | + | chr6_2:79816645-79816664 | Msa0930740:intron | 30.0% |
| !! | TTTTTGCGTTGTTTTGTTCT+TGG | + | chr6_2:79816675-79816694 | Msa0930740:intron | 30.0% |
| !! | AATAACTTTTTCTAAGCCGA+AGG | - | chr6_2:79816748-79816767 | None:intergenic | 30.0% |
| CGGCTTAGAAAAAGTTATTA+AGG | + | chr6_2:79816749-79816768 | Msa0930740:intron | 30.0% | |
| ATTCTAATTCATTGTTGCAG+CGG | + | chr6_2:79816998-79817017 | Msa0930740:intron | 30.0% | |
| TAATCACCTTATCAAAGACT+GGG | - | chr6_2:79817291-79817310 | None:intergenic | 30.0% | |
| ! | TTTTTGCAATGAATTCTGCA+AGG | + | chr6_2:79817440-79817459 | Msa0930740:intron | 30.0% |
| ! | ACCACTTTACAAGTTTTTGA+AGG | + | chr6_2:79817557-79817576 | Msa0930740:CDS | 30.0% |
| TCCTTCAAAAACTTGTAAAG+TGG | - | chr6_2:79817561-79817580 | None:intergenic | 30.0% | |
| !! | AAGTTTTTGAAGGATCAGAA+AGG | + | chr6_2:79817567-79817586 | Msa0930740:CDS | 30.0% |
| ATCTAGAAGAAAAGGAAAAG+AGG | - | chr6_2:79817878-79817897 | None:intergenic | 30.0% | |
| TTCTAGATGATCAATACTTG+TGG | + | chr6_2:79817890-79817909 | Msa0930740:intron | 30.0% | |
| TGTGTGTTTCATTGAAAAGA+GGG | - | chr6_2:79818012-79818031 | None:intergenic | 30.0% | |
| ACATTATTTGCTTGCATGAT+GGG | - | chr6_2:79818290-79818309 | None:intergenic | 30.0% | |
| AACATTATTTGCTTGCATGA+TGG | - | chr6_2:79818291-79818310 | None:intergenic | 30.0% | |
| TAGTTTCATTTAGATAGCGA+TGG | + | chr6_2:79818353-79818372 | Msa0930740:intron | 30.0% | |
| CTCTTAATCCACCATTTATT+TGG | + | chr6_2:79818379-79818398 | Msa0930740:intron | 30.0% | |
| GGAATGCATAAAATGAGAAA+GGG | - | chr6_2:79818408-79818427 | None:intergenic | 30.0% | |
| AGGAATGCATAAAATGAGAA+AGG | - | chr6_2:79818409-79818428 | None:intergenic | 30.0% | |
| AATCTATTCAACGCTTTCAT+AGG | + | chr6_2:79818472-79818491 | Msa0930740:three_prime_UTR | 30.0% | |
| CAACATATTAAGAATCTTCC+AGG | - | chr6_2:79818547-79818566 | None:intergenic | 30.0% | |
| !! | ACTTTTCCTTTGAAAATTGG+TGG | + | chr6_2:79818819-79818838 | Msa0930740:intron | 30.0% |
| AAACCATAAAGTTGCCAAAA+AGG | + | chr6_2:79818942-79818961 | Msa0930740:three_prime_UTR | 30.0% | |
| ATAAAGTTGCCAAAAAGGAA+GGG | + | chr6_2:79818947-79818966 | Msa0930740:three_prime_UTR | 30.0% | |
| ATTCTTCATTCATATGGGTG+AGG | - | chr6_2:79815382-79815401 | None:intergenic | 35.0% | |
| CAGAAACTCATCTTCCAAAA+TGG | + | chr6_2:79815581-79815600 | Msa0930740:CDS | 35.0% | |
| ! | AGTGAAATCGTAGATGGATT+TGG | - | chr6_2:79815619-79815638 | None:intergenic | 35.0% |
| GTGATATGTACTACAATTGC+AGG | + | chr6_2:79815762-79815781 | Msa0930740:intron | 35.0% | |
| AATCATATGTGCGACTTTAG+AGG | - | chr6_2:79816122-79816141 | None:intergenic | 35.0% | |
| ATAGAATTGCGAAGTATAGC+TGG | + | chr6_2:79816241-79816260 | Msa0930740:intron | 35.0% | |
| !! | GCACAGTTTTTGGATTTATG+AGG | + | chr6_2:79816399-79816418 | Msa0930740:intron | 35.0% |
| AATAACAGGTCACCTACTAA+TGG | - | chr6_2:79816446-79816465 | None:intergenic | 35.0% | |
| TTACATCCTCTTGACTGTTT+GGG | + | chr6_2:79816561-79816580 | Msa0930740:intron | 35.0% | |
| !!! | TCTGTTTTTGTTGCTTGGTT+TGG | + | chr6_2:79816609-79816628 | Msa0930740:intron | 35.0% |
| ACAAAACAATTACCCACGAA+GGG | - | chr6_2:79816702-79816721 | None:intergenic | 35.0% | |
| TACAAAACAATTACCCACGA+AGG | - | chr6_2:79816703-79816722 | None:intergenic | 35.0% | |
| !!! | TTTTGTTTTTGGCACACCTT+CGG | + | chr6_2:79816729-79816748 | Msa0930740:intron | 35.0% |
| GGCTTCTTCAAAAAACAGTT+GGG | + | chr6_2:79816781-79816800 | Msa0930740:intron | 35.0% | |
| GCTTCTTCAAAAAACAGTTG+GGG | + | chr6_2:79816782-79816801 | Msa0930740:intron | 35.0% | |
| CTTCTTCAAAAAACAGTTGG+GGG | + | chr6_2:79816783-79816802 | Msa0930740:intron | 35.0% | |
| TGAGATTGGACTATCATATG+TGG | + | chr6_2:79816806-79816825 | Msa0930740:intron | 35.0% | |
| GAGATTGGACTATCATATGT+GGG | + | chr6_2:79816807-79816826 | Msa0930740:intron | 35.0% | |
| ! | TGTTCTGTACCAGAAGTATA+AGG | + | chr6_2:79817051-79817070 | Msa0930740:CDS | 35.0% |
| ! | TACCAGAAGTATAAGGATCA+AGG | + | chr6_2:79817058-79817077 | Msa0930740:CDS | 35.0% |
| TTTGTCCTTGGTTAAAGTCA+CGG | - | chr6_2:79817085-79817104 | None:intergenic | 35.0% | |
| !! | GTCTCTAGACTTTGAAATCT+TGG | + | chr6_2:79817177-79817196 | Msa0930740:intron | 35.0% |
| TGAATTTCTTCACTAGATCC+TGG | - | chr6_2:79817235-79817254 | None:intergenic | 35.0% | |
| ! | TTCAGAATGTTGTTTGCACA+AGG | + | chr6_2:79817251-79817270 | Msa0930740:CDS | 35.0% |
| TGAATTCCCAGTCTTTGATA+AGG | + | chr6_2:79817282-79817301 | Msa0930740:CDS | 35.0% | |
| GTAATCACCTTATCAAAGAC+TGG | - | chr6_2:79817292-79817311 | None:intergenic | 35.0% | |
| TTGTTTGGACTCGATATACT+TGG | + | chr6_2:79817376-79817395 | Msa0930740:intron | 35.0% | |
| CAGCATATACAATTTGGCTA+GGG | - | chr6_2:79817408-79817427 | None:intergenic | 35.0% | |
| ACAGCATATACAATTTGGCT+AGG | - | chr6_2:79817409-79817428 | None:intergenic | 35.0% | |
| !! | TTTTTGAAGGATCAGAAAGG+AGG | + | chr6_2:79817570-79817589 | Msa0930740:CDS | 35.0% |
| GATCAGAAAGGAGGAATATT+TGG | + | chr6_2:79817579-79817598 | Msa0930740:CDS | 35.0% | |
| AAAGGAGGAATATTTGGAGA+TGG | + | chr6_2:79817585-79817604 | Msa0930740:CDS | 35.0% | |
| TATTTGGAGATGGTATCAAG+TGG | + | chr6_2:79817595-79817614 | Msa0930740:CDS | 35.0% | |
| CTTAGTAAACAAAGAAGGGA+AGG | + | chr6_2:79817632-79817651 | Msa0930740:CDS | 35.0% | |
| ! | TATCTAACCTCGATTTTCAG+AGG | - | chr6_2:79817687-79817706 | None:intergenic | 35.0% |
| !! | TTGTGCTTATATTTTAGGCC+AGG | + | chr6_2:79817712-79817731 | Msa0930740:intron | 35.0% |
| ! | AGGACATTGAGAAGCTTTTA+CGG | + | chr6_2:79817794-79817813 | Msa0930740:CDS | 35.0% |
| GTGTGTGTTTCATTGAAAAG+AGG | - | chr6_2:79818013-79818032 | None:intergenic | 35.0% | |
| AGTTGTGGTAAGGGTTTATT+TGG | - | chr6_2:79818039-79818058 | None:intergenic | 35.0% | |
| ! | CATTCGCTATGACAGTATTT+TGG | - | chr6_2:79818146-79818165 | None:intergenic | 35.0% |
| CATTATTTGCTTGCATGATG+GGG | - | chr6_2:79818289-79818308 | None:intergenic | 35.0% | |
| AGAAAGGGCTTCCAAATAAA+TGG | - | chr6_2:79818393-79818412 | None:intergenic | 35.0% | |
| TCCAGGCCATAAATTAACTA+GGG | - | chr6_2:79818530-79818549 | None:intergenic | 35.0% | |
| TTCCAGGCCATAAATTAACT+AGG | - | chr6_2:79818531-79818550 | None:intergenic | 35.0% | |
| !! | ATTTGGTGTTCTCACTTTCT+TGG | + | chr6_2:79818596-79818615 | Msa0930740:three_prime_UTR | 35.0% |
| TCACATAGGTTGTCACAAAA+TGG | - | chr6_2:79818726-79818745 | None:intergenic | 35.0% | |
| GAGAGATAAAGTTGTCACAT+AGG | - | chr6_2:79818740-79818759 | None:intergenic | 35.0% | |
| ACTTTCTCTCTCTATTGCTT+TGG | + | chr6_2:79818779-79818798 | Msa0930740:intron | 35.0% | |
| AGGAAAAGTAGATAGTGACA+CGG | - | chr6_2:79818808-79818827 | None:intergenic | 35.0% | |
| ! | TGACAACCACCAATTTTCAA+AGG | - | chr6_2:79818828-79818847 | None:intergenic | 35.0% |
| !! | CTTCCTTTTTGGCAACTTTA+TGG | - | chr6_2:79818948-79818967 | None:intergenic | 35.0% |
| CATAAAGTTGCCAAAAAGGA+AGG | + | chr6_2:79818946-79818965 | Msa0930740:three_prime_UTR | 35.0% | |
| ! | CAAACTTTACCCTTCCTTTT+TGG | - | chr6_2:79818959-79818978 | None:intergenic | 35.0% |
| TTCATTCATATGGGTGAGGA+CGG | - | chr6_2:79815378-79815397 | None:intergenic | 40.0% | |
| !! | ACACACAGTTGTTGACTTTC+TGG | + | chr6_2:79815511-79815530 | Msa0930740:CDS | 40.0% |
| AAGATGAGTTTCTGCGAAAG+AGG | - | chr6_2:79815575-79815594 | None:intergenic | 40.0% | |
| ! | GGATGAATTTTCGGCCATTT+TGG | - | chr6_2:79815598-79815617 | None:intergenic | 40.0% |
| CTTGACAGTGAAATCGTAGA+TGG | - | chr6_2:79815625-79815644 | None:intergenic | 40.0% | |
| CATCTACGATTTCACTGTCA+AGG | + | chr6_2:79815623-79815642 | Msa0930740:CDS | 40.0% | |
| CTACAATTGCAGGATATCAG+TGG | + | chr6_2:79815772-79815791 | Msa0930740:intron | 40.0% | |
| TCTGAGTCAATACAGAGGAA+AGG | + | chr6_2:79815807-79815826 | Msa0930740:CDS | 40.0% | |
| TTGTCAATGTTGCCTCACAA+TGG | + | chr6_2:79815839-79815858 | Msa0930740:CDS | 40.0% | |
| GTTACATCCTCTTGACTGTT+TGG | + | chr6_2:79816560-79816579 | Msa0930740:intron | 40.0% | |
| !!! | GTTTTTGTTGCTTGGTTTGG+AGG | + | chr6_2:79816612-79816631 | Msa0930740:intron | 40.0% |
| CAAAACAATTACCCACGAAG+GGG | - | chr6_2:79816701-79816720 | None:intergenic | 40.0% | |
| CGGCTTCTTCAAAAAACAGT+TGG | + | chr6_2:79816780-79816799 | Msa0930740:intron | 40.0% | |
| ATCTGACACTGTAAAGCCTT+AGG | + | chr6_2:79816844-79816863 | Msa0930740:intron | 40.0% | |
| ! | TTGCTTTGGCTTAGATCCTA+AGG | - | chr6_2:79816863-79816882 | None:intergenic | 40.0% |
| CAACAAAGAAGTCGTTGCTT+TGG | - | chr6_2:79816877-79816896 | None:intergenic | 40.0% | |
| CAAAGCAACGACTTCTTTGT+TGG | + | chr6_2:79816875-79816894 | Msa0930740:intron | 40.0% | |
| GACCTTGATCCTTATACTTC+TGG | - | chr6_2:79817063-79817082 | None:intergenic | 40.0% | |
| AAACAAAGAAGGGAAGGTTG+TGG | + | chr6_2:79817638-79817657 | Msa0930740:CDS | 40.0% | |
| TACTGTCATAGCGAATGTGT+TGG | + | chr6_2:79818149-79818168 | Msa0930740:intron | 40.0% | |
| ACTGTCATAGCGAATGTGTT+GGG | + | chr6_2:79818150-79818169 | Msa0930740:intron | 40.0% | |
| GACTCAATTGTGCAGTGTAT+TGG | - | chr6_2:79818260-79818279 | None:intergenic | 40.0% | |
| GACGAAGAAATAGAATAGCG+CGG | - | chr6_2:79818332-79818351 | None:intergenic | 40.0% | |
| AAGGGCTTCCAAATAAATGG+TGG | - | chr6_2:79818390-79818409 | None:intergenic | 40.0% | |
| TTCAACGCTTTCATAGGAGA+AGG | + | chr6_2:79818478-79818497 | Msa0930740:three_prime_UTR | 40.0% | |
| TCCCTAGTTAATTTATGGCC+TGG | + | chr6_2:79818526-79818545 | Msa0930740:three_prime_UTR | 40.0% | |
| CGAAAAAGTCATCACTCAGA+GGG | - | chr6_2:79818914-79818933 | None:intergenic | 40.0% | |
| ! | CCTCTGAGTGATGACTTTTT+CGG | + | chr6_2:79818912-79818931 | Msa0930740:three_prime_UTR | 40.0% |
| ! | AAGGAAGGGTAAAGTTTGCT+TGG | + | chr6_2:79818961-79818980 | Msa0930740:three_prime_UTR | 40.0% |
| ! | AGGAAGGGTAAAGTTTGCTT+GGG | + | chr6_2:79818962-79818981 | Msa0930740:three_prime_UTR | 40.0% |
| GTGAGTCTGAGTCAATACAG+AGG | + | chr6_2:79815802-79815821 | Msa0930740:CDS | 45.0% | |
| ATACAGAGGAAAGGTTCTGC+TGG | + | chr6_2:79815816-79815835 | Msa0930740:CDS | 45.0% | |
| ! | CATATGTGCGACTTTAGAGG+TGG | - | chr6_2:79816119-79816138 | None:intergenic | 45.0% |
| AAAACAGTTGGGGGTGAGAT+TGG | + | chr6_2:79816792-79816811 | Msa0930740:intron | 45.0% | |
| AAGGTCCGTGACTTTAACCA+AGG | + | chr6_2:79817077-79817096 | Msa0930740:intron | 45.0% | |
| TTTCCATGCAACCAGTTTCG+TGG | + | chr6_2:79817202-79817221 | Msa0930740:CDS | 45.0% | |
| ! | AACCTCGATTTTCAGAGGAG+CGG | - | chr6_2:79817682-79817701 | None:intergenic | 45.0% |
| GCACAACGTACATAGAAACC+TGG | - | chr6_2:79817733-79817752 | None:intergenic | 45.0% | |
| AAGTCATCACTCAGAGGGAA+AGG | - | chr6_2:79818909-79818928 | None:intergenic | 45.0% | |
| CCGAAAAAGTCATCACTCAG+AGG | - | chr6_2:79818915-79818934 | None:intergenic | 45.0% | |
| !! | TCTTATAATAATATAAAATA+CGG | + | chr6_2:79815459-79815478 | Msa0930740:five_prime_UTR | 5.0% |
| !! | TTAATATATCAAATTATTAT+AGG | + | chr6_2:79817509-79817528 | Msa0930740:intron | 5.0% |
| !! | TAAAAAAAAAAAAAAAAAGA+AGG | - | chr6_2:79818440-79818459 | None:intergenic | 5.0% |
| CGAAGTATAGCTGGCACCTA+TGG | + | chr6_2:79816250-79816269 | Msa0930740:intron | 50.0% | |
| TACGCACCCAAACAGTCAAG+AGG | - | chr6_2:79816570-79816589 | None:intergenic | 50.0% | |
| TTGACTGTTTGGGTGCGTAG+AGG | + | chr6_2:79816571-79816590 | Msa0930740:intron | 50.0% | |
| TTTGGGTGCGTAGAGGTTTG+TGG | + | chr6_2:79816578-79816597 | Msa0930740:intron | 50.0% | |
| ! | TTTTGTTCTTGGCCCCTTCG+TGG | + | chr6_2:79816686-79816705 | Msa0930740:intron | 50.0% |
| TTTGTTCTTGGCCCCTTCGT+GGG | + | chr6_2:79816687-79816706 | Msa0930740:intron | 50.0% | |
| TGTCCACGAAACTGGTTGCA+TGG | - | chr6_2:79817208-79817227 | None:intergenic | 50.0% | |
| ATGCAACCAGTTTCGTGGAC+AGG | + | chr6_2:79817207-79817226 | Msa0930740:CDS | 50.0% | |
| GACATTTGGCACACTATGCG+TGG | + | chr6_2:79817345-79817364 | Msa0930740:intron | 50.0% | |
| !! | TGCGTGGAGATGGTCTTGTT+TGG | + | chr6_2:79817361-79817380 | Msa0930740:intron | 50.0% |
| ! | ATTTTCAGAGGAGCGGTGGT+AGG | - | chr6_2:79817675-79817694 | None:intergenic | 50.0% |
| ! | TTGCTTGCATGATGGGGAGT+GGG | - | chr6_2:79818283-79818302 | None:intergenic | 50.0% |
| ! | TTTGCTTGCATGATGGGGAG+TGG | - | chr6_2:79818284-79818303 | None:intergenic | 50.0% |
| CTGGTTCCTGTCCACGAAAC+TGG | - | chr6_2:79817216-79817235 | None:intergenic | 55.0% | |
| CAGTTTCGTGGACAGGAACC+AGG | + | chr6_2:79817214-79817233 | Msa0930740:CDS | 55.0% | |
| TGGCACACTATGCGTGGAGA+TGG | + | chr6_2:79817351-79817370 | Msa0930740:intron | 55.0% | |
| ! | CTCGATTTTCAGAGGAGCGG+TGG | - | chr6_2:79817679-79817698 | None:intergenic | 55.0% |
| ! | CACCGCTCCTCTGAAAATCG+AGG | + | chr6_2:79817677-79817696 | Msa0930740:CDS | 55.0% |
| ! | TGCTTGCATGATGGGGAGTG+GGG | - | chr6_2:79818282-79818301 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 79815365 | 79819009 | 79815365 | ID=Msa0930740;Name=Msa0930740 |
| chr6_2 | mRNA | 79815365 | 79819009 | 79815365 | ID=Msa0930740-mRNA-1;Parent=Msa0930740;Name=Msa0930740-mRNA-1;_AED=0.10;_eAED=0.10;_QI=142|1|1|1|0.71|0.62|8|377|198 |
| chr6_2 | exon | 79815365 | 79815644 | 79815365 | ID=Msa0930740-mRNA-1:exon:13845;Parent=Msa0930740-mRNA-1 |
| chr6_2 | exon | 79815784 | 79815860 | 79815784 | ID=Msa0930740-mRNA-1:exon:13846;Parent=Msa0930740-mRNA-1 |
| chr6_2 | exon | 79817018 | 79817079 | 79817018 | ID=Msa0930740-mRNA-1:exon:13847;Parent=Msa0930740-mRNA-1 |
| chr6_2 | exon | 79817185 | 79817303 | 79817185 | ID=Msa0930740-mRNA-1:exon:13848;Parent=Msa0930740-mRNA-1 |
| chr6_2 | exon | 79817531 | 79817698 | 79817531 | ID=Msa0930740-mRNA-1:exon:13849;Parent=Msa0930740-mRNA-1 |
| chr6_2 | exon | 79817793 | 79817849 | 79817793 | ID=Msa0930740-mRNA-1:exon:13850;Parent=Msa0930740-mRNA-1 |
| chr6_2 | exon | 79818463 | 79818698 | 79818463 | ID=Msa0930740-mRNA-1:exon:13851;Parent=Msa0930740-mRNA-1 |
| chr6_2 | exon | 79818893 | 79819009 | 79818893 | ID=Msa0930740-mRNA-1:exon:13852;Parent=Msa0930740-mRNA-1 |
| chr6_2 | five_prime_UTR | 79815365 | 79815506 | 79815365 | ID=Msa0930740-mRNA-1:five_prime_utr;Parent=Msa0930740-mRNA-1 |
| chr6_2 | CDS | 79815507 | 79815644 | 79815507 | ID=Msa0930740-mRNA-1:cds;Parent=Msa0930740-mRNA-1 |
| chr6_2 | CDS | 79815784 | 79815860 | 79815784 | ID=Msa0930740-mRNA-1:cds;Parent=Msa0930740-mRNA-1 |
| chr6_2 | CDS | 79817018 | 79817079 | 79817018 | ID=Msa0930740-mRNA-1:cds;Parent=Msa0930740-mRNA-1 |
| chr6_2 | CDS | 79817185 | 79817303 | 79817185 | ID=Msa0930740-mRNA-1:cds;Parent=Msa0930740-mRNA-1 |
| chr6_2 | CDS | 79817531 | 79817698 | 79817531 | ID=Msa0930740-mRNA-1:cds;Parent=Msa0930740-mRNA-1 |
| chr6_2 | CDS | 79817793 | 79817825 | 79817793 | ID=Msa0930740-mRNA-1:cds;Parent=Msa0930740-mRNA-1 |
| chr6_2 | three_prime_UTR | 79817826 | 79817849 | 79817826 | ID=Msa0930740-mRNA-1:three_prime_utr;Parent=Msa0930740-mRNA-1 |
| chr6_2 | three_prime_UTR | 79818463 | 79818698 | 79818463 | ID=Msa0930740-mRNA-1:three_prime_utr;Parent=Msa0930740-mRNA-1 |
| chr6_2 | three_prime_UTR | 79818893 | 79819009 | 79818893 | ID=Msa0930740-mRNA-1:three_prime_utr;Parent=Msa0930740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
