Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027100 | XP_013468403.1 | 83.696 | 368 | 13 | 4 | 1 | 321 | 1 | 368 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027100 | Msa0078660 | 0.820084 | 8.268725e-53 | -8.615850e-47 |
| Msa0027100 | Msa0101810 | -0.803394 | 3.560621e-49 | -8.615850e-47 |
| Msa0027100 | Msa0190830 | 0.833270 | 5.871822e-56 | -8.615850e-47 |
| Msa0027100 | Msa0217400 | 0.801189 | 1.012598e-48 | -8.615850e-47 |
| Msa0027100 | Msa0233190 | 0.818322 | 2.082874e-52 | -8.615850e-47 |
| Msa0027100 | Msa0266000 | -0.832940 | 7.096802e-56 | -8.615850e-47 |
| Msa0027100 | Msa0269780 | 0.818388 | 2.011603e-52 | -8.615850e-47 |
| Msa0027100 | Msa0311580 | 0.836727 | 7.896818e-57 | -8.615850e-47 |
| Msa0027100 | Msa0422500 | 0.803038 | 4.217421e-49 | -8.615850e-47 |
| Msa0027100 | Msa0473240 | 0.811921 | 5.496917e-51 | -8.615850e-47 |
| Msa0027100 | Msa0492880 | 0.804665 | 1.936824e-49 | -8.615850e-47 |
| Msa0027100 | Msa0558690 | 0.803778 | 2.964135e-49 | -8.615850e-47 |
| Msa0027100 | Msa0567020 | 0.817763 | 2.785786e-52 | -8.615850e-47 |
| Msa0027100 | Msa0658570 | 0.824639 | 7.239718e-54 | -8.615850e-47 |
| Msa0027100 | Msa0703490 | 0.815737 | 7.931417e-52 | -8.615850e-47 |
| Msa0027100 | Msa0891040 | 0.802862 | 4.587204e-49 | -8.615850e-47 |
| Msa0027100 | Msa1040120 | 0.801266 | 9.764279e-49 | -8.615850e-47 |
| Msa0027100 | Msa1181550 | 0.804549 | 2.047724e-49 | -8.615850e-47 |
| Msa0027100 | Msa1229600 | 0.809893 | 1.510911e-50 | -8.615850e-47 |
| Msa0027100 | Msa1247920 | 0.806750 | 7.068368e-50 | -8.615850e-47 |
| Msa0027100 | Msa1310210 | 0.803500 | 3.384279e-49 | -8.615850e-47 |
| Msa0027100 | Msa1376890 | 0.819349 | 1.216665e-52 | -8.615850e-47 |
| Msa0027100 | Msa1393410 | 0.816865 | 4.435316e-52 | -8.615850e-47 |
| Msa0027100 | Msa1435420 | 0.813460 | 2.530912e-51 | -8.615850e-47 |
| Msa0027100 | Msa1465900 | 0.824210 | 9.130041e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027100 | MtrunA17_Chr1g0183031 | 83.696 | 368 | 13 | 4 | 1 | 321 | 1 | 368 | 0.0 | 570 |
| Msa0027100 | MtrunA17_Chr7g0262551 | 55.989 | 359 | 112 | 3 | 9 | 321 | 6 | 364 | 2.50e-140 | 401 |
| Msa0027100 | MtrunA17_Chr1g0183021 | 55.153 | 359 | 115 | 3 | 9 | 321 | 108 | 466 | 1.53e-129 | 377 |
| Msa0027100 | MtrunA17_Chr7g0262571 | 51.771 | 367 | 131 | 3 | 1 | 321 | 53 | 419 | 1.74e-126 | 368 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027100 | AT4G28706.1 | 52.528 | 356 | 123 | 3 | 11 | 320 | 45 | 400 | 1.09e-127 | 370 |
| Msa0027100 | AT4G28706.3 | 52.528 | 356 | 123 | 3 | 11 | 320 | 47 | 402 | 1.30e-127 | 370 |
| Msa0027100 | AT4G28706.2 | 52.381 | 357 | 123 | 4 | 11 | 320 | 47 | 403 | 7.27e-126 | 366 |
| Msa0027100 | AT4G28706.4 | 52.235 | 358 | 124 | 4 | 11 | 321 | 47 | 404 | 2.17e-125 | 366 |
| Msa0027100 | AT5G43910.2 | 43.750 | 368 | 156 | 5 | 1 | 321 | 1 | 364 | 3.98e-95 | 286 |
| Msa0027100 | AT5G43910.4 | 42.949 | 312 | 139 | 4 | 1 | 277 | 1 | 308 | 7.43e-77 | 238 |
| Msa0027100 | AT5G43910.5 | 41.343 | 283 | 131 | 3 | 1 | 248 | 1 | 283 | 4.29e-67 | 213 |
| Msa0027100 | AT5G43910.1 | 40.925 | 281 | 131 | 3 | 1 | 246 | 1 | 281 | 1.14e-66 | 211 |
| Msa0027100 | AT5G43910.3 | 41.516 | 277 | 127 | 3 | 1 | 242 | 1 | 277 | 1.78e-66 | 210 |
Find 96 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGTACTTCTAAGTTTC+TGG | 0.136833 | 1_1:-51364882 | Msa0027100:three_prime_UTR |
| AAGCTTACCAAACAAGTTTA+AGG | 0.156663 | 1_1:+51364616 | None:intergenic |
| CAACTAAGATGGATATATTT+TGG | 0.178686 | 1_1:+51366919 | None:intergenic |
| CTATTCTTGGTGTCTGGTTT+TGG | 0.209515 | 1_1:+51369847 | None:intergenic |
| GTTGTTCTAAATTAAATTTA+AGG | 0.225336 | 1_1:-51364834 | Msa0027100:three_prime_UTR |
| GAATTGAGTGGTTCTATTCT+TGG | 0.228607 | 1_1:+51369834 | None:intergenic |
| TTACAATGTATTGTTAAATA+AGG | 0.234535 | 1_1:-51364646 | Msa0027100:three_prime_UTR |
| GTATGTGGGAGGTTATATTT+TGG | 0.242581 | 1_1:-51365800 | Msa0027100:CDS |
| AAATTTGTAGAGACATTATT+TGG | 0.267752 | 1_1:-51364750 | Msa0027100:three_prime_UTR |
| TAAATTTGTGATTGCAACTT+TGG | 0.288479 | 1_1:-51366635 | Msa0027100:CDS |
| CTTACATCCTTAAACTTGTT+TGG | 0.298151 | 1_1:-51364623 | Msa0027100:three_prime_UTR |
| GTGTTGGAAGACATTAATTA+AGG | 0.307724 | 1_1:+51370043 | None:intergenic |
| CAGGTTGGGTTTGGTGGCGT+TGG | 0.319074 | 1_1:-51369901 | Msa0027100:CDS |
| GGAAGGATTGAATGACCTTC+TGG | 0.319125 | 1_1:-51366880 | Msa0027100:CDS |
| CATAGACCAACAACTTCTTT+AGG | 0.331164 | 1_1:+51364670 | None:intergenic |
| ACTTGTTTGGTAAGCTTACT+TGG | 0.332520 | 1_1:-51364610 | Msa0027100:three_prime_UTR |
| TTTGTGTGGCAGGTTGGGTT+TGG | 0.343196 | 1_1:-51369910 | Msa0027100:intron |
| TTAATAAAGTATGCCAGGTT+TGG | 0.355803 | 1_1:+51365015 | None:intergenic |
| AGGCATCCTAACATCAAAAT+AGG | 0.360561 | 1_1:+51367233 | None:intergenic |
| TCAATAATAATGTAGCTAAA+TGG | 0.361983 | 1_1:+51367703 | None:intergenic |
| GTGGTTCTATTCTTGGTGTC+TGG | 0.388614 | 1_1:+51369841 | None:intergenic |
| TGGTAAGCTTACTTGGTAAT+CGG | 0.395404 | 1_1:-51364603 | Msa0027100:three_prime_UTR |
| TGTCTTCCTAAAGAAGTTGT+TGG | 0.399127 | 1_1:-51364676 | Msa0027100:three_prime_UTR |
| AAATTTGTGATTGCAACTTT+GGG | 0.399648 | 1_1:-51366634 | Msa0027100:CDS |
| TAAAGTGTCACTTGGTAGAT+TGG | 0.403907 | 1_1:-51364708 | Msa0027100:three_prime_UTR |
| AGGTTTGGATCAGTGCGATA+TGG | 0.407682 | 1_1:+51365030 | None:intergenic |
| GCAATCACAAATTTAAGTCT+TGG | 0.419317 | 1_1:+51366643 | None:intergenic |
| GTGTGGCAGGTTGGGTTTGG+TGG | 0.423838 | 1_1:-51369907 | Msa0027100:intron |
| TGTGGATACTTCTTCATTTG+TGG | 0.428757 | 1_1:-51367992 | Msa0027100:intron |
| ATTGAATGACCTTCTGGACT+TGG | 0.430538 | 1_1:-51366874 | Msa0027100:CDS |
| CCTTTCAGCATCAACTAAGA+TGG | 0.434238 | 1_1:+51366908 | None:intergenic |
| TTTGCACGCGAAAGATCTTC+CGG | 0.437545 | 1_1:+51367288 | None:intergenic |
| GCAATGACAAGAGCAGTTGC+AGG | 0.440063 | 1_1:+51367213 | None:intergenic |
| TAATTAGAGCCTCAAATATC+CGG | 0.446017 | 1_1:-51364995 | Msa0027100:exon |
| AGAATTGAAACTAGTGCTCT+TGG | 0.449446 | 1_1:+51366676 | None:intergenic |
| GAATAGAACCACTCAATTCA+AGG | 0.452926 | 1_1:-51369830 | Msa0027100:intron |
| GCTGCTCAATGTAGAGCTCT+TGG | 0.454335 | 1_1:-51365069 | Msa0027100:CDS |
| AGATCTTCCGGTACCATTGT+AGG | 0.463214 | 1_1:+51367300 | None:intergenic |
| TGCTCTTGTCATTGCTAAAG+AGG | 0.464049 | 1_1:-51367205 | Msa0027100:intron |
| TCTAATTAATAAAGTATGCC+AGG | 0.474893 | 1_1:+51365010 | None:intergenic |
| TCGGAGCTTATTGATACAAC+TGG | 0.481009 | 1_1:-51365755 | Msa0027100:intron |
| CTAGGTTGCAAATGACGCTC+AGG | 0.489161 | 1_1:-51368049 | Msa0027100:intron |
| AGGGAGAGGAAAAGCAGTGT+TGG | 0.491482 | 1_1:+51370027 | None:intergenic |
| AAATTGTTATCTGCATTGAA+TGG | 0.495412 | 1_1:-51367267 | Msa0027100:CDS |
| GGAGCTAGAAGCTGAGGGTG+TGG | 0.495904 | 1_1:-51368010 | Msa0027100:CDS |
| GAAATCTTTAACAATGAGAA+AGG | 0.497680 | 1_1:-51366424 | Msa0027100:CDS |
| TGCAAATGACGCTCAGGGTA+GGG | 0.500517 | 1_1:-51368043 | Msa0027100:CDS |
| TTCTCAGCAGCATCAGAGAC+TGG | 0.506990 | 1_1:+51364772 | None:intergenic |
| GTTACAAAATTTAGAGCAGA+CGG | 0.513539 | 1_1:-51365833 | Msa0027100:CDS |
| TGTTTCCAGGTCTCAAAGGA+AGG | 0.519022 | 1_1:-51367733 | Msa0027100:intron |
| CATGCCAACCTGCGTTGCCT+CGG | 0.527612 | 1_1:-51366388 | Msa0027100:intron |
| GACGGGATAGGATCAGTATG+TGG | 0.528060 | 1_1:-51365815 | Msa0027100:CDS |
| AAATTTAGAGCAGACGGGAT+AGG | 0.530754 | 1_1:-51365827 | Msa0027100:CDS |
| CGAGGCAACGCAGGTTGGCA+TGG | 0.530850 | 1_1:+51366389 | None:intergenic |
| AGGTCATTCAATCCTTCCCT+TGG | 0.534609 | 1_1:+51366885 | None:intergenic |
| AAGAAGACACTCACAATGAC+AGG | 0.535206 | 1_1:+51369998 | None:intergenic |
| TAGTTGATGCTGAAAGGCCA+AGG | 0.535644 | 1_1:-51366902 | Msa0027100:CDS |
| AATGTAGAGCTCTTGGAGCT+AGG | 0.538329 | 1_1:-51365062 | Msa0027100:CDS |
| GGGTTCACACTTAGAAGAAG+TGG | 0.542271 | 1_1:-51366463 | Msa0027100:CDS |
| GATAGAGGAGCTAGAAGCTG+AGG | 0.543786 | 1_1:-51368016 | Msa0027100:CDS |
| TTGCAAATGACGCTCAGGGT+AGG | 0.550449 | 1_1:-51368044 | Msa0027100:CDS |
| CCATCTTAGTTGATGCTGAA+AGG | 0.556239 | 1_1:-51366908 | Msa0027100:CDS |
| AGGATCTCCTACAATGGTAC+CGG | 0.559044 | 1_1:-51367307 | Msa0027100:CDS |
| CATTTGTTTCCAGGTCTCAA+AGG | 0.562119 | 1_1:-51367737 | Msa0027100:intron |
| AGCTATTACCGAGGCAACGC+AGG | 0.562817 | 1_1:+51366380 | None:intergenic |
| TGCATTGAATGGAGCTAGAG+TGG | 0.563511 | 1_1:-51367256 | Msa0027100:CDS |
| GCTTACCACATGAGAAGCAA+AGG | 0.564484 | 1_1:+51365386 | None:intergenic |
| GTTTCCAGGTCTCAAAGGAA+GGG | 0.571955 | 1_1:-51367732 | Msa0027100:intron |
| ATATCGCACTGATCCAAACC+TGG | 0.578250 | 1_1:-51365028 | Msa0027100:CDS |
| CACAGAAGGATCTCCTACAA+TGG | 0.585278 | 1_1:-51367313 | Msa0027100:CDS |
| ACACTTAGAAGAAGTGGATG+TGG | 0.593132 | 1_1:-51366457 | Msa0027100:CDS |
| CATAATCAGCCAAGTCCAGA+AGG | 0.594681 | 1_1:+51366865 | None:intergenic |
| ATGCTTCAGAAAGGTGCAGA+TGG | 0.598465 | 1_1:-51366595 | Msa0027100:intron |
| ATAAAAGCAAAGTATAATTG+TGG | 0.601966 | 1_1:-51364548 | None:intergenic |
| TTACAAAATTTAGAGCAGAC+GGG | 0.602375 | 1_1:-51365832 | Msa0027100:CDS |
| GTTGTATCAATAAGCTCCGA+TGG | 0.602597 | 1_1:+51365758 | None:intergenic |
| ATTACCGAGGCAACGCAGGT+TGG | 0.609993 | 1_1:+51366384 | None:intergenic |
| TCAAAATCCTCAGCATAACA+AGG | 0.610008 | 1_1:-51364969 | Msa0027100:three_prime_UTR |
| GTTGCCCTTTGCTTCTCATG+TGG | 0.613678 | 1_1:-51365391 | Msa0027100:intron |
| CTTACCACATGAGAAGCAAA+GGG | 0.616843 | 1_1:+51365387 | None:intergenic |
| GGCTGCATAATGCTTCAGAA+AGG | 0.624035 | 1_1:-51366604 | Msa0027100:CDS |
| CGAACATGTATATTCACAGA+AGG | 0.631793 | 1_1:-51367327 | Msa0027100:CDS |
| TAAGCTTACTTGGTAATCGG+TGG | 0.631985 | 1_1:-51364600 | Msa0027100:three_prime_UTR |
| GCTGAAGCCTTGTTATGCTG+AGG | 0.632019 | 1_1:+51364962 | None:intergenic |
| ACGGGATAGGATCAGTATGT+GGG | 0.632094 | 1_1:-51365814 | Msa0027100:CDS |
| GATGCTGAAAGGCCAAGGGA+AGG | 0.639502 | 1_1:-51366897 | Msa0027100:CDS |
| AAATGCTATAAAGTGTCACT+TGG | 0.642035 | 1_1:-51364716 | Msa0027100:three_prime_UTR |
| ATAGAGGAGCTAGAAGCTGA+GGG | 0.648546 | 1_1:-51368015 | Msa0027100:CDS |
| ATTGCAACTTTGGGAAAAGA+CGG | 0.651143 | 1_1:-51366625 | Msa0027100:CDS |
| AGGATGAACCTTGAATTGAG+TGG | 0.655549 | 1_1:+51369822 | None:intergenic |
| AGAGCTCTTGGAGCTAGGAG+TGG | 0.656252 | 1_1:-51365057 | Msa0027100:CDS |
| TAGGTTGCAAATGACGCTCA+GGG | 0.659046 | 1_1:-51368048 | Msa0027100:CDS |
| AGTTGATGCTGAAAGGCCAA+GGG | 0.668854 | 1_1:-51366901 | Msa0027100:CDS |
| GTATCAATAAGCTCCGATGG+TGG | 0.679992 | 1_1:+51365761 | None:intergenic |
| GGATAGGATCAGTATGTGGG+AGG | 0.683588 | 1_1:-51365811 | Msa0027100:CDS |
| CATTTCACAGACATGGACAG+AGG | 0.705633 | 1_1:-51366710 | Msa0027100:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTCATAAAAATATAATTA+CGG | - | chr1_1:51364888-51364907 | Msa0027100:three_prime_UTR | 10.0% |
| !!! | GCTAATTATATTTTAAATAT+TGG | - | chr1_1:51365843-51365862 | Msa0027100:intron | 10.0% |
| !!! | GATATATTTTATTTTAGATA+TGG | + | chr1_1:51366735-51366754 | None:intergenic | 10.0% |
| !! | ATTGTAATAATAAAAACACA+AGG | + | chr1_1:51364810-51364829 | None:intergenic | 15.0% |
| !! | AAAAACAAATCTTATGTATA+AGG | - | chr1_1:51364994-51365013 | Msa0027100:exon | 15.0% |
| !! | TCAATATTTCTTAATAATGT+TGG | - | chr1_1:51366013-51366032 | Msa0027100:intron | 15.0% |
| !!! | AAAGTCTTTTAAGATATATT+GGG | - | chr1_1:51366096-51366115 | Msa0027100:intron | 15.0% |
| !!! | TTGAAAATTGAAGTAAATTT+TGG | + | chr1_1:51366664-51366683 | None:intergenic | 15.0% |
| !! | ATGTTAAATCATTTAAGTAA+TGG | + | chr1_1:51366936-51366955 | None:intergenic | 15.0% |
| !! | TATAAGTATATGAAAGTTAT+TGG | - | chr1_1:51367019-51367038 | Msa0027100:intron | 15.0% |
| !! | ATCATAATTCTAAATAGATT+CGG | - | chr1_1:51367452-51367471 | Msa0027100:intron | 15.0% |
| !! | TTAATAAAAACTGAGAATAT+AGG | - | chr1_1:51368377-51368396 | Msa0027100:intron | 15.0% |
| !! | TAATAAAAACTGAGAATATA+GGG | - | chr1_1:51368378-51368397 | Msa0027100:intron | 15.0% |
| !!! | GTTGTTCTAAATTAAATTTA+AGG | - | chr1_1:51369761-51369780 | Msa0027100:intron | 15.0% |
| !! | TTACAATGTATTGTTAAATA+AGG | - | chr1_1:51369949-51369968 | Msa0027100:intron | 15.0% |
| !!! | CATTGTTTAATATTTGTTGT+TGG | - | chr1_1:51365094-51365113 | Msa0027100:intron | 20.0% |
| !! | AAAATATTACCCTATCTTAA+TGG | + | chr1_1:51365702-51365721 | None:intergenic | 20.0% |
| !!! | TGTATAATTTTAGTCAAAGT+GGG | - | chr1_1:51365785-51365804 | Msa0027100:CDS | 20.0% |
| !!! | TTATATTTTAAATATTGGCG+TGG | - | chr1_1:51365848-51365867 | Msa0027100:intron | 20.0% |
| !!! | CAAAGTCTTTTAAGATATAT+TGG | - | chr1_1:51366095-51366114 | Msa0027100:intron | 20.0% |
| !!! | CTTATATTAAACACATGTTT+TGG | + | chr1_1:51366239-51366258 | None:intergenic | 20.0% |
| !! | AAAACCTTAGAAATTATTCT+TGG | + | chr1_1:51366452-51366471 | None:intergenic | 20.0% |
| !! | CTAATTAATTTCTAATGACT+AGG | - | chr1_1:51366528-51366547 | Msa0027100:intron | 20.0% |
| !! | TCAATAATAATGTAGCTAAA+TGG | + | chr1_1:51366895-51366914 | None:intergenic | 20.0% |
| !! | TTAAGTTAAATTTAAGCACT+AGG | - | chr1_1:51367066-51367085 | Msa0027100:intron | 20.0% |
| !!! | ACAAGAACATTAGTTAATTT+TGG | - | chr1_1:51367833-51367852 | Msa0027100:intron | 20.0% |
| !!! | CAAGAACATTAGTTAATTTT+GGG | - | chr1_1:51367834-51367853 | Msa0027100:intron | 20.0% |
| !!! | ACTTGATAATTATATGAGAA+GGG | + | chr1_1:51368258-51368277 | None:intergenic | 20.0% |
| !! | AAAGTAATTGTAAGCATATA+TGG | - | chr1_1:51368350-51368369 | Msa0027100:intron | 20.0% |
| !! | ACATACTTTACATTGAAAAT+CGG | - | chr1_1:51368416-51368435 | Msa0027100:intron | 20.0% |
| !!! | TATGATAATGCACAATTATT+AGG | + | chr1_1:51368465-51368484 | None:intergenic | 20.0% |
| !! | TGATTAGAAAGGAAAAAAAA+AGG | + | chr1_1:51368607-51368626 | None:intergenic | 20.0% |
| !!! | TTTTTTTCCTTTCTAATCAA+TGG | - | chr1_1:51368608-51368627 | Msa0027100:intron | 20.0% |
| !!! | TCTAAATTTTGTAACATTCT+AGG | + | chr1_1:51368757-51368776 | None:intergenic | 20.0% |
| !! | ATATAAACAAAACAGTTGTT+TGG | + | chr1_1:51369100-51369119 | None:intergenic | 20.0% |
| !!! | TATATTAATGTGTTTGTTGT+TGG | - | chr1_1:51369482-51369501 | Msa0027100:intron | 20.0% |
| !! | AAATTTGTAGAGACATTATT+TGG | - | chr1_1:51369845-51369864 | Msa0027100:CDS | 20.0% |
| !!! | TATACTTTGCTTTTATGATT+TGG | + | chr1_1:51370043-51370062 | None:intergenic | 20.0% |
| ! | AATGAATGAAATTGTTTGTG+TGG | - | chr1_1:51364671-51364690 | Msa0027100:three_prime_UTR | 25.0% |
| ! | AATAAAAACACAAGGAAAAG+AGG | + | chr1_1:51364802-51364821 | None:intergenic | 25.0% |
| ! | TATTACAATGAAGTTCCATT+TGG | - | chr1_1:51364821-51364840 | Msa0027100:three_prime_UTR | 25.0% |
| !!! | GAGGTATAACTAATTTTGAT+TGG | + | chr1_1:51364848-51364867 | None:intergenic | 25.0% |
| ! | AATAGTGAATACTATAGACA+AGG | - | chr1_1:51364961-51364980 | Msa0027100:three_prime_UTR | 25.0% |
| ! | ACAAATCTTATGTATAAGGA+CGG | - | chr1_1:51364998-51365017 | Msa0027100:exon | 25.0% |
| ! | TAAGAATGTCTTAAGAGTTA+AGG | + | chr1_1:51365051-51365070 | None:intergenic | 25.0% |
| ! | ATTATTAATTGAAATCTCCG+TGG | - | chr1_1:51365170-51365189 | Msa0027100:intron | 25.0% |
| ! | TTATTAATTGAAATCTCCGT+GGG | - | chr1_1:51365171-51365190 | Msa0027100:intron | 25.0% |
| ! | AATTGTCCTTAAAAAATCCA+TGG | + | chr1_1:51365225-51365244 | None:intergenic | 25.0% |
| ! | TATATCTCTTGAACTTCATA+TGG | - | chr1_1:51365563-51365582 | Msa0027100:intron | 25.0% |
| !!! | CTGTATAATTTTAGTCAAAG+TGG | - | chr1_1:51365784-51365803 | Msa0027100:CDS | 25.0% |
| ! | GATTCATAGAGATAAATGAT+GGG | + | chr1_1:51366154-51366173 | None:intergenic | 25.0% |
| ! | TGATTCATAGAGATAAATGA+TGG | + | chr1_1:51366155-51366174 | None:intergenic | 25.0% |
| ! | TTAACACAATCCTATAAAAC+TGG | + | chr1_1:51366286-51366305 | None:intergenic | 25.0% |
| ! | AAAGCCAAGAATAATTTCTA+AGG | - | chr1_1:51366445-51366464 | Msa0027100:CDS | 25.0% |
| ! | ATTAATTAGCCACATTCATA+AGG | + | chr1_1:51366517-51366536 | None:intergenic | 25.0% |
| !! | AAAGATAATCTAAAGCAAAC+AGG | - | chr1_1:51366638-51366657 | Msa0027100:CDS | 25.0% |
| ! | AAATAGCAAGTTTATGATGT+TGG | + | chr1_1:51366780-51366799 | None:intergenic | 25.0% |
| ! | AATTAGATTTCTTAAGCATG+TGG | - | chr1_1:51367145-51367164 | Msa0027100:intron | 25.0% |
| ! | AAATTGTTATCTGCATTGAA+TGG | - | chr1_1:51367328-51367347 | Msa0027100:CDS | 25.0% |
| ! | GTTGTAGCATAATGTAATAT+AGG | - | chr1_1:51367426-51367445 | Msa0027100:intron | 25.0% |
| ! | TCTAAGTAAATTCTCATTGT+TGG | - | chr1_1:51367523-51367542 | Msa0027100:intron | 25.0% |
| !! | AATTCAATTAGCTTGGTTTA+TGG | + | chr1_1:51367636-51367655 | None:intergenic | 25.0% |
| !! | CAACTAAGATGGATATATTT+TGG | + | chr1_1:51367679-51367698 | None:intergenic | 25.0% |
| !!! | CACTAGTTTCAATTCTTTTA+AGG | - | chr1_1:51367926-51367945 | Msa0027100:intron | 25.0% |
| ! | TAAATTTGTGATTGCAACTT+TGG | - | chr1_1:51367960-51367979 | Msa0027100:intron | 25.0% |
| ! | AAATTTGTGATTGCAACTTT+GGG | - | chr1_1:51367961-51367980 | Msa0027100:intron | 25.0% |
| ! | GAAATCTTTAACAATGAGAA+AGG | - | chr1_1:51368171-51368190 | Msa0027100:intron | 25.0% |
| !! | TTGATAATTATATGAGAAGG+GGG | + | chr1_1:51368256-51368275 | None:intergenic | 25.0% |
| !! | CTTGATAATTATATGAGAAG+GGG | + | chr1_1:51368257-51368276 | None:intergenic | 25.0% |
| !! | CACTTGATAATTATATGAGA+AGG | + | chr1_1:51368259-51368278 | None:intergenic | 25.0% |
| ! | AAGGAAAAAAAAAGGTTGTA+TGG | + | chr1_1:51368599-51368618 | None:intergenic | 25.0% |
| ! | TTAATTCATGGAATGTTAAG+AGG | + | chr1_1:51368911-51368930 | None:intergenic | 25.0% |
| !! | TTTATCGTAAATTTGAGATC+AGG | + | chr1_1:51368963-51368982 | None:intergenic | 25.0% |
| ! | GATAGCTGCAAATAAAATAA+AGG | + | chr1_1:51369158-51369177 | None:intergenic | 25.0% |
| ! | TATATCATCGTATCACTATT+TGG | + | chr1_1:51369257-51369276 | None:intergenic | 25.0% |
| ! | GAAGCAATTTAACTGAAATT+AGG | - | chr1_1:51369407-51369426 | Msa0027100:intron | 25.0% |
| ! | TCTAATTAATAAAGTATGCC+AGG | + | chr1_1:51369588-51369607 | None:intergenic | 25.0% |
| !! | CTTTTGTAAACTAAAATACG+AGG | + | chr1_1:51369671-51369690 | None:intergenic | 25.0% |
| GTGTTGGAAGACATTAATTA+AGG | + | chr1_1:51364555-51364574 | None:intergenic | 30.0% | |
| ! | ACTGTTATGTTTTCTCATTC+TGG | - | chr1_1:51364630-51364649 | Msa0027100:three_prime_UTR | 30.0% |
| !!! | CTAATTTTGATTGGTCCAAA+TGG | + | chr1_1:51364839-51364858 | None:intergenic | 30.0% |
| !!! | TGAGTTCATTGATTTTTGTG+AGG | + | chr1_1:51364867-51364886 | None:intergenic | 30.0% |
| ! | GAATCAATATGTGTGCTTTT+TGG | - | chr1_1:51365133-51365152 | Msa0027100:intron | 30.0% |
| ! | TTTTTATTGCGATAACCTTC+CGG | - | chr1_1:51365294-51365313 | Msa0027100:intron | 30.0% |
| TGTATAGAAGAGACATATGA+AGG | + | chr1_1:51365469-51365488 | None:intergenic | 30.0% | |
| TTAGAAAGTTCACAACAATG+TGG | - | chr1_1:51365631-51365650 | Msa0027100:intron | 30.0% | |
| TCCTAAAGAACTATTAGCAA+TGG | - | chr1_1:51365657-51365676 | Msa0027100:intron | 30.0% | |
| ACCATTGCTAATAGTTCTTT+AGG | + | chr1_1:51365661-51365680 | None:intergenic | 30.0% | |
| ! | TTTTGCTCTACCATTAAGAT+AGG | - | chr1_1:51365689-51365708 | Msa0027100:intron | 30.0% |
| TTTGCTCTACCATTAAGATA+GGG | - | chr1_1:51365690-51365709 | Msa0027100:intron | 30.0% | |
| !! | TTGATAGTGAGTACTGATTA+TGG | - | chr1_1:51365820-51365839 | Msa0027100:CDS | 30.0% |
| !! | TGATAGTGAGTACTGATTAT+GGG | - | chr1_1:51365821-51365840 | Msa0027100:CDS | 30.0% |
| AGAAATTGTGTTAGAAATCG+TGG | + | chr1_1:51366315-51366334 | None:intergenic | 30.0% | |
| TGAATGTGTGTTTGCAATAT+AGG | - | chr1_1:51366367-51366386 | Msa0027100:intron | 30.0% | |
| ACTCAAAAACCTTATGAATG+TGG | - | chr1_1:51366505-51366524 | Msa0027100:intron | 30.0% | |
| CAAGTGAAAAATTAGGAGAA+AGG | + | chr1_1:51366977-51366996 | None:intergenic | 30.0% | |
| ! | TTCTCCTAATTTTTCACTTG+TGG | - | chr1_1:51366977-51366996 | Msa0027100:intron | 30.0% |
| ! | TCTCCTAATTTTTCACTTGT+GGG | - | chr1_1:51366978-51366997 | Msa0027100:intron | 30.0% |
| !! | AAGCACTAGGAGTATTAAAA+AGG | - | chr1_1:51367079-51367098 | Msa0027100:intron | 30.0% |
| CTCACTAGACATTATGTTAT+TGG | + | chr1_1:51367110-51367129 | None:intergenic | 30.0% | |
| ! | CTATTAGTACTTTTCTCAAG+TGG | - | chr1_1:51367498-51367517 | Msa0027100:intron | 30.0% |
| AAGTAAATTCTCATTGTTGG+AGG | - | chr1_1:51367526-51367545 | Msa0027100:intron | 30.0% | |
| AGGTATTCCTTCACAATATT+TGG | + | chr1_1:51367572-51367591 | None:intergenic | 30.0% | |
| TAATTGAATTTCGCTCTTAC+AGG | - | chr1_1:51367646-51367665 | Msa0027100:intron | 30.0% | |
| GCAATCACAAATTTAAGTCT+TGG | + | chr1_1:51367955-51367974 | None:intergenic | 30.0% | |
| TATATGAATGCATCATGACA+AGG | + | chr1_1:51368059-51368078 | None:intergenic | 30.0% | |
| GATGCATTCATATACAAGAA+TGG | - | chr1_1:51368065-51368084 | Msa0027100:intron | 30.0% | |
| ! | TTCAATTTACTTTCTAGCAG+AGG | - | chr1_1:51368111-51368130 | Msa0027100:intron | 30.0% |
| ! | TCAATTTACTTTCTAGCAGA+GGG | - | chr1_1:51368112-51368131 | Msa0027100:intron | 30.0% |
| TGATAATTATATGAGAAGGG+GGG | + | chr1_1:51368255-51368274 | None:intergenic | 30.0% | |
| !!! | TAGCTATTTCTTCCCTATTT+TGG | - | chr1_1:51368537-51368556 | Msa0027100:intron | 30.0% |
| CAATGTAGGTTACCAAAATA+GGG | + | chr1_1:51368552-51368571 | None:intergenic | 30.0% | |
| ! | TATAGCACCATTGATTAGAA+AGG | + | chr1_1:51368618-51368637 | None:intergenic | 30.0% |
| ! | GTTACAAAATTTAGAGCAGA+CGG | - | chr1_1:51368762-51368781 | Msa0027100:intron | 30.0% |
| ! | TTACAAAATTTAGAGCAGAC+GGG | - | chr1_1:51368763-51368782 | Msa0027100:intron | 30.0% |
| ! | TATGTGGGAGGTTATATTTT+GGG | - | chr1_1:51368796-51368815 | Msa0027100:intron | 30.0% |
| ATCTGAAAAAATTCCACCAT+CGG | - | chr1_1:51368821-51368840 | Msa0027100:intron | 30.0% | |
| !! | TTTGTTGGAGCAGTTTTATA+TGG | - | chr1_1:51368876-51368895 | Msa0027100:intron | 30.0% |
| ! | AACGATCGATTTCAAATTGA+TGG | - | chr1_1:51369022-51369041 | Msa0027100:intron | 30.0% |
| CTGAAATTAGGAGAAAATCA+AGG | - | chr1_1:51369419-51369438 | Msa0027100:intron | 30.0% | |
| TAGCAGTTAATAACAAACAC+AGG | + | chr1_1:51369461-51369480 | None:intergenic | 30.0% | |
| TTAATAAAGTATGCCAGGTT+TGG | + | chr1_1:51369583-51369602 | None:intergenic | 30.0% | |
| TAATTAGAGCCTCAAATATC+CGG | - | chr1_1:51369600-51369619 | Msa0027100:intron | 30.0% | |
| ! | AAATGCTATAAAGTGTCACT+TGG | - | chr1_1:51369879-51369898 | Msa0027100:CDS | 30.0% |
| ! | CTTACATCCTTAAACTTGTT+TGG | - | chr1_1:51369972-51369991 | Msa0027100:intron | 30.0% |
| AAGCTTACCAAACAAGTTTA+AGG | + | chr1_1:51369982-51370001 | None:intergenic | 30.0% | |
| TGGCAAATCCTGAAAAATTA+TGG | - | chr1_1:51370015-51370034 | Msa0027100:CDS | 30.0% | |
| GGCAAATCCTGAAAAATTAT+GGG | - | chr1_1:51370016-51370035 | Msa0027100:CDS | 30.0% | |
| ! | ATTTGGACCCATAATTTTTC+AGG | + | chr1_1:51370026-51370045 | None:intergenic | 30.0% |
| ! | TCACAATGACAGGATTTTCA+GGG | + | chr1_1:51364590-51364609 | None:intergenic | 35.0% |
| AATGAAATTGTTTGTGTGGC+AGG | - | chr1_1:51364675-51364694 | Msa0027100:three_prime_UTR | 35.0% | |
| ! | GAATTGAGTGGTTCTATTCT+TGG | + | chr1_1:51364764-51364783 | None:intergenic | 35.0% |
| GAATAGAACCACTCAATTCA+AGG | - | chr1_1:51364765-51364784 | Msa0027100:three_prime_UTR | 35.0% | |
| AATGTCTTAAGAGTTAAGGC+TGG | + | chr1_1:51365047-51365066 | None:intergenic | 35.0% | |
| ! | AATCCTGGTTATCTAGAGTT+TGG | - | chr1_1:51365331-51365350 | Msa0027100:intron | 35.0% |
| ! | GTTATCTAGAGTTTGGTTGA+AGG | - | chr1_1:51365338-51365357 | Msa0027100:intron | 35.0% |
| ! | TGAGAGAGTGTAGTTAAAGT+GGG | + | chr1_1:51365520-51365539 | None:intergenic | 35.0% |
| CTCACTATCAAACAAAAGCT+AGG | + | chr1_1:51365811-51365830 | None:intergenic | 35.0% | |
| CGCTCATGATTATCACTATT+GGG | + | chr1_1:51366180-51366199 | None:intergenic | 35.0% | |
| ACGCTCATGATTATCACTAT+TGG | + | chr1_1:51366181-51366200 | None:intergenic | 35.0% | |
| !! | ACCTCACATACCAGTTTTAT+AGG | - | chr1_1:51366273-51366292 | Msa0027100:intron | 35.0% |
| TCCTATAAAACTGGTATGTG+AGG | + | chr1_1:51366277-51366296 | None:intergenic | 35.0% | |
| ATTGTGTTAGAAATCGTGGT+TGG | + | chr1_1:51366311-51366330 | None:intergenic | 35.0% | |
| TGTGGATACTTCTTCATTTG+TGG | - | chr1_1:51366603-51366622 | Msa0027100:CDS | 35.0% | |
| ! | TTCCTTTTCCATTTGTTTCC+AGG | - | chr1_1:51366849-51366868 | Msa0027100:intron | 35.0% |
| ! | CTCCTAATTTTTCACTTGTG+GGG | - | chr1_1:51366979-51366998 | Msa0027100:intron | 35.0% |
| TGCTAATTTATCCTACAACG+TGG | - | chr1_1:51367229-51367248 | Msa0027100:CDS | 35.0% | |
| CGAACATGTATATTCACAGA+AGG | - | chr1_1:51367268-51367287 | Msa0027100:CDS | 35.0% | |
| AGGCATCCTAACATCAAAAT+AGG | + | chr1_1:51367365-51367384 | None:intergenic | 35.0% | |
| CCTTCACAATATTTGGTACA+TGG | + | chr1_1:51367565-51367584 | None:intergenic | 35.0% | |
| CCATGTACCAAATATTGTGA+AGG | - | chr1_1:51367562-51367581 | Msa0027100:intron | 35.0% | |
| GCAATTAGATGAACAGACAT+AGG | + | chr1_1:51367592-51367611 | None:intergenic | 35.0% | |
| AGAGCGAAATTCAATTAGCT+TGG | + | chr1_1:51367643-51367662 | None:intergenic | 35.0% | |
| ATGCTCAGAAAAGTTTCCTA+AGG | - | chr1_1:51367757-51367776 | Msa0027100:intron | 35.0% | |
| ! | TGATTTGAGTAACTTGCCTT+AGG | + | chr1_1:51367776-51367795 | None:intergenic | 35.0% |
| AGAATTGAAACTAGTGCTCT+TGG | + | chr1_1:51367922-51367941 | None:intergenic | 35.0% | |
| ! | ATTGCAACTTTGGGAAAAGA+CGG | - | chr1_1:51367970-51367989 | Msa0027100:intron | 35.0% |
| ATGACAAGGATCAAACAAAG+GGG | + | chr1_1:51368045-51368064 | None:intergenic | 35.0% | |
| CATGACAAGGATCAAACAAA+GGG | + | chr1_1:51368046-51368065 | None:intergenic | 35.0% | |
| TCATGACAAGGATCAAACAA+AGG | + | chr1_1:51368047-51368066 | None:intergenic | 35.0% | |
| ! | GTTTTATGTAGCTATTACCG+AGG | + | chr1_1:51368227-51368246 | None:intergenic | 35.0% |
| GCAATGTAGGTTACCAAAAT+AGG | + | chr1_1:51368553-51368572 | None:intergenic | 35.0% | |
| !! | GGTTGTATGGTGTTATTGAT+GGG | + | chr1_1:51368586-51368605 | None:intergenic | 35.0% |
| !! | AGGTTGTATGGTGTTATTGA+TGG | + | chr1_1:51368587-51368606 | None:intergenic | 35.0% |
| ! | GTATGTGGGAGGTTATATTT+TGG | - | chr1_1:51368795-51368814 | Msa0027100:intron | 35.0% |
| TTATTGATACAACTGGTGCT+GGG | - | chr1_1:51368847-51368866 | Msa0027100:intron | 35.0% | |
| !!! | CGAGTCACGTTTATTGATTT+TGG | - | chr1_1:51368934-51368953 | Msa0027100:intron | 35.0% |
| ! | ATCGTAAATTTGAGATCAGG+CGG | + | chr1_1:51368960-51368979 | None:intergenic | 35.0% |
| AACAGTTCGTAAAGTGATCT+AGG | + | chr1_1:51369048-51369067 | None:intergenic | 35.0% | |
| !! | TTTTGATGACCGGATATTTG+AGG | + | chr1_1:51369612-51369631 | None:intergenic | 35.0% |
| TCAAAATCCTCAGCATAACA+AGG | - | chr1_1:51369626-51369645 | Msa0027100:intron | 35.0% | |
| TGCTTGTACTTCTAAGTTTC+TGG | - | chr1_1:51369713-51369732 | Msa0027100:intron | 35.0% | |
| !! | TAAAGTGTCACTTGGTAGAT+TGG | - | chr1_1:51369887-51369906 | Msa0027100:CDS | 35.0% |
| TGTCTTCCTAAAGAAGTTGT+TGG | - | chr1_1:51369919-51369938 | Msa0027100:intron | 35.0% | |
| CATAGACCAACAACTTCTTT+AGG | + | chr1_1:51369928-51369947 | None:intergenic | 35.0% | |
| ACTTGTTTGGTAAGCTTACT+TGG | - | chr1_1:51369985-51370004 | Msa0027100:intron | 35.0% | |
| ! | TGGTAAGCTTACTTGGTAAT+CGG | - | chr1_1:51369992-51370011 | Msa0027100:intron | 35.0% |
| ! | CTCACAATGACAGGATTTTC+AGG | + | chr1_1:51364591-51364610 | None:intergenic | 40.0% |
| AAGAAGACACTCACAATGAC+AGG | + | chr1_1:51364600-51364619 | None:intergenic | 40.0% | |
| AAATTGTTTGTGTGGCAGGT+TGG | - | chr1_1:51364679-51364698 | Msa0027100:three_prime_UTR | 40.0% | |
| AATTGTTTGTGTGGCAGGTT+GGG | - | chr1_1:51364680-51364699 | Msa0027100:three_prime_UTR | 40.0% | |
| !!! | CTATTCTTGGTGTCTGGTTT+TGG | + | chr1_1:51364751-51364770 | None:intergenic | 40.0% |
| AGGATGAACCTTGAATTGAG+TGG | + | chr1_1:51364776-51364795 | None:intergenic | 40.0% | |
| AACACAAGGAAAAGAGGAAG+AGG | + | chr1_1:51364796-51364815 | None:intergenic | 40.0% | |
| TGTTGGTGTACTCATCTCTT+TGG | - | chr1_1:51365111-51365130 | Msa0027100:intron | 40.0% | |
| ATTGGATGTGCAACTTCTGT+GGG | - | chr1_1:51365198-51365217 | Msa0027100:intron | 40.0% | |
| !!! | GTGGGTCCATGGATTTTTTA+AGG | - | chr1_1:51365216-51365235 | Msa0027100:intron | 40.0% |
| GGATTTCTTTCTTCGAGAAC+CGG | + | chr1_1:51365316-51365335 | None:intergenic | 40.0% | |
| GTTCTCGAAGAAAGAAATCC+TGG | - | chr1_1:51365316-51365335 | Msa0027100:intron | 40.0% | |
| CAACCAAACTCTAGATAACC+AGG | + | chr1_1:51365337-51365356 | None:intergenic | 40.0% | |
| ! | GTGAGAGAGTGTAGTTAAAG+TGG | + | chr1_1:51365521-51365540 | None:intergenic | 40.0% |
| GATGACGTGGGAAAGAAAAT+GGG | + | chr1_1:51365897-51365916 | None:intergenic | 40.0% | |
| AGATGACGTGGGAAAGAAAA+TGG | + | chr1_1:51365898-51365917 | None:intergenic | 40.0% | |
| ! | TTTTCTTTCCCACGTCATCT+CGG | - | chr1_1:51365898-51365917 | Msa0027100:intron | 40.0% |
| GATAAAGGAAACCTGATAGC+AGG | + | chr1_1:51366125-51366144 | None:intergenic | 40.0% | |
| !! | AATGATGGGTGACACGATAA+AGG | + | chr1_1:51366140-51366159 | None:intergenic | 40.0% |
| GTGTTTGCAATATAGGTGCA+AGG | - | chr1_1:51366374-51366393 | Msa0027100:intron | 40.0% | |
| TTTGCAATATAGGTGCAAGG+TGG | - | chr1_1:51366377-51366396 | Msa0027100:intron | 40.0% | |
| TTGCAATATAGGTGCAAGGT+GGG | - | chr1_1:51366378-51366397 | Msa0027100:intron | 40.0% | |
| GACCTGGAAACAAATGGAAA+AGG | + | chr1_1:51366854-51366873 | None:intergenic | 40.0% | |
| !! | CTTTGAGACCTGGAAACAAA+TGG | + | chr1_1:51366860-51366879 | None:intergenic | 40.0% |
| CATTTGTTTCCAGGTCTCAA+AGG | - | chr1_1:51366858-51366877 | Msa0027100:intron | 40.0% | |
| AGTAATGGTGTACATACGTG+TGG | + | chr1_1:51366921-51366940 | None:intergenic | 40.0% | |
| AGCCCCACAAGTGAAAAATT+AGG | + | chr1_1:51366984-51367003 | None:intergenic | 40.0% | |
| !!! | GAGTGGCCTATTTTGATGTT+AGG | - | chr1_1:51367356-51367375 | Msa0027100:intron | 40.0% |
| TGCTCTTGTCATTGCTAAAG+AGG | - | chr1_1:51367390-51367409 | Msa0027100:intron | 40.0% | |
| CCTTTCAGCATCAACTAAGA+TGG | + | chr1_1:51367690-51367709 | None:intergenic | 40.0% | |
| ! | CCATCTTAGTTGATGCTGAA+AGG | - | chr1_1:51367687-51367706 | Msa0027100:intron | 40.0% |
| ATTGAATGACCTTCTGGACT+TGG | - | chr1_1:51367721-51367740 | Msa0027100:CDS | 40.0% | |
| TCCATGTCTGTGAAATGTGT+CGG | + | chr1_1:51367882-51367901 | None:intergenic | 40.0% | |
| ACACTTAGAAGAAGTGGATG+TGG | - | chr1_1:51368138-51368157 | Msa0027100:intron | 40.0% | |
| GTTATTGATGGGAGTCTTTG+TGG | + | chr1_1:51368575-51368594 | None:intergenic | 40.0% | |
| ! | AAATTTAGAGCAGACGGGAT+AGG | - | chr1_1:51368768-51368787 | Msa0027100:intron | 40.0% |
| GTTGTATCAATAAGCTCCGA+TGG | + | chr1_1:51368840-51368859 | None:intergenic | 40.0% | |
| TCGGAGCTTATTGATACAAC+TGG | - | chr1_1:51368840-51368859 | Msa0027100:intron | 40.0% | |
| CTTATTGATACAACTGGTGC+TGG | - | chr1_1:51368846-51368865 | Msa0027100:intron | 40.0% | |
| ! | TATTGATACAACTGGTGCTG+GGG | - | chr1_1:51368848-51368867 | Msa0027100:intron | 40.0% |
| CGTGACTCGCATTTAATTCA+TGG | + | chr1_1:51368923-51368942 | None:intergenic | 40.0% | |
| ! | CATTTTCTCTGGTGAGAAGT+TGG | + | chr1_1:51369185-51369204 | None:intergenic | 40.0% |
| CTTACCACATGAGAAGCAAA+GGG | + | chr1_1:51369211-51369230 | None:intergenic | 40.0% | |
| !! | TGTTTGTTGTTGGCATGTGA+TGG | - | chr1_1:51369492-51369511 | Msa0027100:intron | 40.0% |
| TTGGCATGTGATGGTATTAC+AGG | - | chr1_1:51369501-51369520 | Msa0027100:intron | 40.0% | |
| !! | ATGCTGAGGATTTTGATGAC+CGG | + | chr1_1:51369622-51369641 | None:intergenic | 40.0% |
| ! | TAAGCTTACTTGGTAATCGG+TGG | - | chr1_1:51369995-51370014 | Msa0027100:intron | 40.0% |
| !! | ATGACAGGATTTTCAGGGAG+AGG | + | chr1_1:51364585-51364604 | None:intergenic | 45.0% |
| !! | GTGGTTCTATTCTTGGTGTC+TGG | + | chr1_1:51364757-51364776 | None:intergenic | 45.0% |
| CATTGGATGTGCAACTTCTG+TGG | - | chr1_1:51365197-51365216 | Msa0027100:intron | 45.0% | |
| TTCTTTCTTCGAGAACCGGA+AGG | + | chr1_1:51365312-51365331 | None:intergenic | 45.0% | |
| TAACTACACTCTCTCACGCT+TGG | - | chr1_1:51365524-51365543 | Msa0027100:intron | 45.0% | |
| ATAGTAGACCGAGATGACGT+GGG | + | chr1_1:51365909-51365928 | None:intergenic | 45.0% | |
| AAAGGAAACCTGATAGCAGG+TGG | + | chr1_1:51366122-51366141 | None:intergenic | 45.0% | |
| TGCAATATAGGTGCAAGGTG+GGG | - | chr1_1:51366379-51366398 | Msa0027100:intron | 45.0% | |
| AGCACAAGTCAACGCATTTC+CGG | + | chr1_1:51366411-51366430 | None:intergenic | 45.0% | |
| !! | TTGACTTGTGCTGCTCGTTT+GGG | - | chr1_1:51366419-51366438 | Msa0027100:CDS | 45.0% |
| TAGGTTGCAAATGACGCTCA+GGG | - | chr1_1:51366547-51366566 | Msa0027100:intron | 45.0% | |
| !! | TCAGGGTAGGGTTTTGATAG+AGG | - | chr1_1:51366564-51366583 | Msa0027100:intron | 45.0% |
| ATAGAGGAGCTAGAAGCTGA+GGG | - | chr1_1:51366580-51366599 | Msa0027100:intron | 45.0% | |
| TGTTTCCAGGTCTCAAAGGA+AGG | - | chr1_1:51366862-51366881 | Msa0027100:intron | 45.0% | |
| GTTTCCAGGTCTCAAAGGAA+GGG | - | chr1_1:51366863-51366882 | Msa0027100:CDS | 45.0% | |
| TCCTACAACGTGGAACATTC+AGG | - | chr1_1:51367239-51367258 | Msa0027100:CDS | 45.0% | |
| TCCTGAATGTTCCACGTTGT+AGG | + | chr1_1:51367243-51367262 | None:intergenic | 45.0% | |
| CACAGAAGGATCTCCTACAA+TGG | - | chr1_1:51367282-51367301 | Msa0027100:CDS | 45.0% | |
| AGGATCTCCTACAATGGTAC+CGG | - | chr1_1:51367288-51367307 | Msa0027100:CDS | 45.0% | |
| AGATCTTCCGGTACCATTGT+AGG | + | chr1_1:51367298-51367317 | None:intergenic | 45.0% | |
| TTTGCACGCGAAAGATCTTC+CGG | + | chr1_1:51367310-51367329 | None:intergenic | 45.0% | |
| TGCATTGAATGGAGCTAGAG+TGG | - | chr1_1:51367339-51367358 | Msa0027100:intron | 45.0% | |
| ! | TAGTTGATGCTGAAAGGCCA+AGG | - | chr1_1:51367693-51367712 | Msa0027100:intron | 45.0% |
| ! | AGTTGATGCTGAAAGGCCAA+GGG | - | chr1_1:51367694-51367713 | Msa0027100:CDS | 45.0% |
| AGGTCATTCAATCCTTCCCT+TGG | + | chr1_1:51367713-51367732 | None:intergenic | 45.0% | |
| GGAAGGATTGAATGACCTTC+TGG | - | chr1_1:51367715-51367734 | Msa0027100:CDS | 45.0% | |
| CATAATCAGCCAAGTCCAGA+AGG | + | chr1_1:51367733-51367752 | None:intergenic | 45.0% | |
| TCCGACACATTTCACAGACA+TGG | - | chr1_1:51367878-51367897 | Msa0027100:intron | 45.0% | |
| CATTTCACAGACATGGACAG+AGG | - | chr1_1:51367885-51367904 | Msa0027100:intron | 45.0% | |
| GGCTGCATAATGCTTCAGAA+AGG | - | chr1_1:51367991-51368010 | Msa0027100:intron | 45.0% | |
| ! | ATGCTTCAGAAAGGTGCAGA+TGG | - | chr1_1:51368000-51368019 | Msa0027100:CDS | 45.0% |
| CAAACAAAGGGGTGGAAAAG+AGG | + | chr1_1:51368034-51368053 | None:intergenic | 45.0% | |
| ACAAGGATCAAACAAAGGGG+TGG | + | chr1_1:51368042-51368061 | None:intergenic | 45.0% | |
| GGGTTCACACTTAGAAGAAG+TGG | - | chr1_1:51368132-51368151 | Msa0027100:intron | 45.0% | |
| ACGGGATAGGATCAGTATGT+GGG | - | chr1_1:51368781-51368800 | Msa0027100:intron | 45.0% | |
| GTATCAATAAGCTCCGATGG+TGG | + | chr1_1:51368837-51368856 | None:intergenic | 45.0% | |
| ! | GCAAAGGGCAACATTTTCTC+TGG | + | chr1_1:51369196-51369215 | None:intergenic | 45.0% |
| GCTTACCACATGAGAAGCAA+AGG | + | chr1_1:51369212-51369231 | None:intergenic | 45.0% | |
| AGGTTTGGATCAGTGCGATA+TGG | + | chr1_1:51369568-51369587 | None:intergenic | 45.0% | |
| ! | ATATCGCACTGATCCAAACC+TGG | - | chr1_1:51369567-51369586 | Msa0027100:intron | 45.0% |
| !!! | TTTAACTTAATTATAATTTT+TGG | + | chr1_1:51367056-51367075 | None:intergenic | 5.0% |
| AGGGAGAGGAAAAGCAGTGT+TGG | + | chr1_1:51364571-51364590 | None:intergenic | 50.0% | |
| ! | TTTGTGTGGCAGGTTGGGTT+TGG | - | chr1_1:51364685-51364704 | Msa0027100:three_prime_UTR | 50.0% |
| GAAATCTCCGTGGGAGTCAT+TGG | - | chr1_1:51365180-51365199 | Msa0027100:intron | 50.0% | |
| TGCACATCCAATGACTCCCA+CGG | + | chr1_1:51365190-51365209 | None:intergenic | 50.0% | |
| CATAGTAGACCGAGATGACG+TGG | + | chr1_1:51365910-51365929 | None:intergenic | 50.0% | |
| ATATTGGGCCACCTGCTATC+AGG | - | chr1_1:51366111-51366130 | Msa0027100:intron | 50.0% | |
| GCAATATAGGTGCAAGGTGG+GGG | - | chr1_1:51366380-51366399 | Msa0027100:intron | 50.0% | |
| !! | GTTGACTTGTGCTGCTCGTT+TGG | - | chr1_1:51366418-51366437 | Msa0027100:CDS | 50.0% |
| CTAGGTTGCAAATGACGCTC+AGG | - | chr1_1:51366546-51366565 | Msa0027100:intron | 50.0% | |
| TTGCAAATGACGCTCAGGGT+AGG | - | chr1_1:51366551-51366570 | Msa0027100:intron | 50.0% | |
| TGCAAATGACGCTCAGGGTA+GGG | - | chr1_1:51366552-51366571 | Msa0027100:intron | 50.0% | |
| GATAGAGGAGCTAGAAGCTG+AGG | - | chr1_1:51366579-51366598 | Msa0027100:intron | 50.0% | |
| !! | TAGTCCCTTCCTTTGAGACC+TGG | + | chr1_1:51366870-51366889 | None:intergenic | 50.0% |
| GCAATGACAAGAGCAGTTGC+AGG | + | chr1_1:51367385-51367404 | None:intergenic | 50.0% | |
| GGGAGTCTTTGTGGCAATGT+AGG | + | chr1_1:51368566-51368585 | None:intergenic | 50.0% | |
| GACGGGATAGGATCAGTATG+TGG | - | chr1_1:51368780-51368799 | Msa0027100:intron | 50.0% | |
| GGATAGGATCAGTATGTGGG+AGG | - | chr1_1:51368784-51368803 | Msa0027100:intron | 50.0% | |
| GTTGCCCTTTGCTTCTCATG+TGG | - | chr1_1:51369204-51369223 | Msa0027100:intron | 50.0% | |
| !! | GCTGAAGCCTTGTTATGCTG+AGG | + | chr1_1:51369636-51369655 | None:intergenic | 50.0% |
| TTCTCAGCAGCATCAGAGAC+TGG | + | chr1_1:51369826-51369845 | None:intergenic | 50.0% | |
| GTGCAACTTCTGTGGGTCCA+TGG | - | chr1_1:51365205-51365224 | Msa0027100:intron | 55.0% | |
| GTGCAAGGTGGGGGAAATAC+CGG | - | chr1_1:51366389-51366408 | Msa0027100:CDS | 55.0% | |
| GATGCTGAAAGGCCAAGGGA+AGG | - | chr1_1:51367698-51367717 | Msa0027100:CDS | 55.0% | |
| ATTACCGAGGCAACGCAGGT+TGG | + | chr1_1:51368214-51368233 | None:intergenic | 55.0% | |
| AGCTATTACCGAGGCAACGC+AGG | + | chr1_1:51368218-51368237 | None:intergenic | 55.0% | |
| ! | GGTGCTGGGGATGCATTTGT+TGG | - | chr1_1:51368861-51368880 | Msa0027100:intron | 55.0% |
| ! | GTGTGGCAGGTTGGGTTTGG+TGG | - | chr1_1:51364688-51364707 | Msa0027100:three_prime_UTR | 60.0% |
| !! | CAGGTTGGGTTTGGTGGCGT+TGG | - | chr1_1:51364694-51364713 | Msa0027100:three_prime_UTR | 60.0% |
| GGAGCTAGAAGCTGAGGGTG+TGG | - | chr1_1:51366585-51366604 | Msa0027100:intron | 60.0% | |
| CATGCCAACCTGCGTTGCCT+CGG | - | chr1_1:51368207-51368226 | Msa0027100:intron | 60.0% | |
| ! | CGAGGCAACGCAGGTTGGCA+TGG | + | chr1_1:51368209-51368228 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 51364549 | 51370068 | 51364549 | ID=Msa0027100;Name=Msa0027100 |
| chr1_1 | mRNA | 51364549 | 51370068 | 51364549 | ID=Msa0027100-mRNA-1;Parent=Msa0027100;Name=Msa0027100-mRNA-1;_AED=0.34;_eAED=0.34;_QI=12|0.7|0.81|1|0.8|0.81|11|462|321 |
| chr1_1 | exon | 51364549 | 51365094 | 51364549 | ID=Msa0027100-mRNA-1:exon:15013;Parent=Msa0027100-mRNA-1 |
| chr1_1 | exon | 51365392 | 51365444 | 51365392 | ID=Msa0027100-mRNA-1:exon:15012;Parent=Msa0027100-mRNA-1 |
| chr1_1 | exon | 51365756 | 51365858 | 51365756 | ID=Msa0027100-mRNA-1:exon:15011;Parent=Msa0027100-mRNA-1 |
| chr1_1 | exon | 51366389 | 51366486 | 51366389 | ID=Msa0027100-mRNA-1:exon:15010;Parent=Msa0027100-mRNA-1 |
| chr1_1 | exon | 51366596 | 51366722 | 51366596 | ID=Msa0027100-mRNA-1:exon:15009;Parent=Msa0027100-mRNA-1 |
| chr1_1 | exon | 51366863 | 51366949 | 51366863 | ID=Msa0027100-mRNA-1:exon:15008;Parent=Msa0027100-mRNA-1 |
| chr1_1 | exon | 51367206 | 51367356 | 51367206 | ID=Msa0027100-mRNA-1:exon:15007;Parent=Msa0027100-mRNA-1 |
| chr1_1 | exon | 51367694 | 51367746 | 51367694 | ID=Msa0027100-mRNA-1:exon:15006;Parent=Msa0027100-mRNA-1 |
| chr1_1 | exon | 51367993 | 51368067 | 51367993 | ID=Msa0027100-mRNA-1:exon:15005;Parent=Msa0027100-mRNA-1 |
| chr1_1 | exon | 51369831 | 51369920 | 51369831 | ID=Msa0027100-mRNA-1:exon:15004;Parent=Msa0027100-mRNA-1 |
| chr1_1 | exon | 51370012 | 51370068 | 51370012 | ID=Msa0027100-mRNA-1:exon:15003;Parent=Msa0027100-mRNA-1 |
| chr1_1 | five_prime_UTR | 51370057 | 51370068 | 51370057 | ID=Msa0027100-mRNA-1:five_prime_utr;Parent=Msa0027100-mRNA-1 |
| chr1_1 | CDS | 51370012 | 51370056 | 51370012 | ID=Msa0027100-mRNA-1:cds;Parent=Msa0027100-mRNA-1 |
| chr1_1 | CDS | 51369831 | 51369920 | 51369831 | ID=Msa0027100-mRNA-1:cds;Parent=Msa0027100-mRNA-1 |
| chr1_1 | CDS | 51367993 | 51368067 | 51367993 | ID=Msa0027100-mRNA-1:cds;Parent=Msa0027100-mRNA-1 |
| chr1_1 | CDS | 51367694 | 51367746 | 51367694 | ID=Msa0027100-mRNA-1:cds;Parent=Msa0027100-mRNA-1 |
| chr1_1 | CDS | 51367206 | 51367356 | 51367206 | ID=Msa0027100-mRNA-1:cds;Parent=Msa0027100-mRNA-1 |
| chr1_1 | CDS | 51366863 | 51366949 | 51366863 | ID=Msa0027100-mRNA-1:cds;Parent=Msa0027100-mRNA-1 |
| chr1_1 | CDS | 51366596 | 51366722 | 51366596 | ID=Msa0027100-mRNA-1:cds;Parent=Msa0027100-mRNA-1 |
| chr1_1 | CDS | 51366389 | 51366486 | 51366389 | ID=Msa0027100-mRNA-1:cds;Parent=Msa0027100-mRNA-1 |
| chr1_1 | CDS | 51365756 | 51365858 | 51365756 | ID=Msa0027100-mRNA-1:cds;Parent=Msa0027100-mRNA-1 |
| chr1_1 | CDS | 51365392 | 51365444 | 51365392 | ID=Msa0027100-mRNA-1:cds;Parent=Msa0027100-mRNA-1 |
| chr1_1 | CDS | 51365011 | 51365094 | 51365011 | ID=Msa0027100-mRNA-1:cds;Parent=Msa0027100-mRNA-1 |
| chr1_1 | three_prime_UTR | 51364549 | 51365010 | 51364549 | ID=Msa0027100-mRNA-1:three_prime_utr;Parent=Msa0027100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
