AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0269960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0269960 MtrunA17_Chr1g0193321 96.671 721 22 1 1 719 1 721 0.0 1435
Msa0269960 MtrunA17_Chr7g0271251 48.579 739 286 17 1 708 2 677 0.0 593
Msa0269960 MtrunA17_Chr1g0182791 61.333 150 54 2 395 544 254 399 1.48e-43 165
Msa0269960 MtrunA17_Chr7g0262691 55.000 160 53 5 396 542 185 338 6.42e-37 144
Msa0269960 MtrunA17_Chr3g0095391 61.654 133 39 5 425 557 276 396 1.27e-36 144
Msa0269960 MtrunA17_Chr7g0270871 50.314 159 71 3 407 561 152 306 1.19e-33 133
Msa0269960 MtrunA17_Chr5g0402031 50.336 149 60 2 402 549 59 194 7.40e-28 115
Msa0269960 MtrunA17_Chr1g0153241 65.882 85 29 0 454 538 79 163 1.66e-27 112
Msa0269960 MtrunA17_Chr7g0231461 55.435 92 40 1 432 522 268 359 5.95e-23 103
Msa0269960 MtrunA17_Chr4g0074161 55.405 74 29 1 462 531 208 281 9.85e-19 89.4
Msa0269960 MtrunA17_Chr1g0190731 52.857 70 29 1 462 527 195 264 1.40e-16 82.0
Msa0269960 MtrunA17_Chr1g0152131 47.945 73 37 1 462 533 262 334 1.67e-15 79.3
Msa0269960 MtrunA17_Chr5g0393721 35.294 119 61 3 444 561 207 310 2.19e-15 78.2
Msa0269960 MtrunA17_Chr8g0363921 50.000 64 31 1 462 524 153 216 1.42e-14 74.7
Msa0269960 MtrunA17_Chr3g0144641 45.205 73 39 1 462 533 193 265 2.33e-14 75.9
Msa0269960 MtrunA17_Chr8g0365941 42.105 95 47 3 462 548 307 401 3.77e-14 75.5
Msa0269960 MtrunA17_Chr5g0421111 46.575 73 38 1 462 533 367 439 4.28e-14 75.9
Msa0269960 MtrunA17_Chr1g0207311 36.538 104 46 3 463 561 194 282 4.90e-14 73.6
Msa0269960 MtrunA17_Chr7g0234761 51.562 64 30 1 462 524 319 382 5.03e-14 75.5
Msa0269960 MtrunA17_Chr5g0415291 42.529 87 45 2 439 524 95 177 5.34e-14 72.4
Msa0269960 MtrunA17_Chr4g0035101 45.205 73 39 1 462 533 145 217 5.75e-14 73.9
Msa0269960 MtrunA17_Chr8g0339091 51.562 64 30 1 462 524 293 356 7.84e-14 74.7
Msa0269960 MtrunA17_Chr3g0131771 50.000 64 31 1 462 524 149 212 2.90e-13 71.6
Msa0269960 MtrunA17_Chr3g0134741 36.275 102 50 3 458 559 227 313 4.32e-13 70.9
Msa0269960 MtrunA17_Chr8g0385911 40.000 80 47 1 449 527 134 213 8.19e-13 70.1
Msa0269960 MtrunA17_Chr1g0207301 36.047 86 40 2 476 561 304 374 2.19e-12 69.3
Msa0269960 MtrunA17_Chr7g0258161 43.056 72 40 1 463 533 176 247 2.69e-12 68.9
Msa0269960 MtrunA17_Chr1g0152651 45.455 66 36 0 458 523 272 337 3.19e-12 68.9
Msa0269960 MtrunA17_Chr1g0174161 41.429 70 40 1 463 531 163 232 1.58e-11 66.2
Msa0269960 MtrunA17_Chr1g0184841 50.000 74 33 1 462 531 122 195 6.62e-11 63.9
Msa0269960 MtrunA17_Chr6g0484271 45.312 64 34 1 462 524 157 220 7.14e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0269960 AT1G09530.3 35.703 619 221 24 1 595 1 466 1.07e-71 243
Msa0269960 AT1G09530.2 35.703 619 221 24 1 595 1 466 1.07e-71 243
Msa0269960 AT1G09530.5 35.703 619 221 24 1 595 1 466 1.07e-71 243
Msa0269960 AT1G09530.1 35.703 619 221 24 1 595 1 466 1.07e-71 243
Msa0269960 AT1G09530.4 35.703 619 221 24 1 595 1 466 1.07e-71 243
Msa0269960 AT1G09530.6 35.703 619 221 24 1 595 1 466 1.07e-71 243
Msa0269960 AT2G20180.7 47.458 177 72 5 399 572 153 311 1.31e-34 137
Msa0269960 AT2G20180.1 47.458 177 72 5 399 572 153 311 1.31e-34 137
Msa0269960 AT2G20180.5 47.458 177 72 5 399 572 153 311 1.31e-34 137
Msa0269960 AT2G46970.2 46.193 197 78 7 395 576 127 310 1.40e-34 136
Msa0269960 AT2G46970.1 46.193 197 78 7 395 576 158 341 2.12e-34 136
Msa0269960 AT2G46970.3 46.193 197 78 7 395 576 136 319 2.87e-34 135
Msa0269960 AT2G20180.4 47.458 177 72 5 399 572 224 382 6.35e-34 136
Msa0269960 AT2G20180.6 47.458 177 72 5 399 572 224 382 6.35e-34 136
Msa0269960 AT2G20180.2 47.458 177 72 5 399 572 224 382 6.35e-34 136
Msa0269960 AT2G20180.3 47.458 177 72 5 399 572 224 382 6.35e-34 136
Msa0269960 AT2G20180.8 52.381 126 47 3 399 521 224 339 2.21e-29 120
Msa0269960 AT4G28800.1 43.827 162 67 5 392 548 193 335 2.05e-27 116
Msa0269960 AT4G28790.1 43.709 151 65 4 421 564 244 381 9.76e-27 114
Msa0269960 AT4G36930.1 58.772 114 41 2 432 541 161 272 1.24e-26 112
Msa0269960 AT4G00050.2 59.140 93 34 2 432 523 79 168 2.82e-26 110
Msa0269960 AT4G00050.3 59.140 93 34 2 432 523 181 270 1.26e-25 110
Msa0269960 AT4G00050.1 59.140 93 34 2 432 523 181 270 1.47e-25 110
Msa0269960 AT5G67110.1 54.639 97 44 0 440 536 67 163 1.91e-24 102
Msa0269960 AT3G59060.1 47.552 143 60 3 425 555 212 351 3.19e-23 103
Msa0269960 AT3G59060.3 47.552 143 60 3 425 555 212 351 3.67e-23 103
Msa0269960 AT3G59060.2 47.552 143 60 3 425 555 212 351 3.67e-23 103
Msa0269960 AT3G59060.4 47.552 143 60 3 425 555 212 351 3.67e-23 103
Msa0269960 AT3G62090.1 46.341 123 48 2 460 573 165 278 5.36e-23 101
Msa0269960 AT4G28800.2 41.358 162 65 6 392 548 205 341 6.07e-23 103
Msa0269960 AT3G62090.2 46.341 123 48 2 460 573 182 295 1.12e-22 100
Msa0269960 AT4G28815.2 52.222 90 40 2 456 542 64 153 3.20e-22 96.7
Msa0269960 AT4G28815.1 48.958 96 46 2 450 542 134 229 1.92e-21 96.3
Msa0269960 AT2G43010.2 66.667 81 24 1 445 522 233 313 1.12e-20 95.9
Msa0269960 AT2G43010.1 66.667 81 24 1 445 522 233 313 1.21e-20 95.9
Msa0269960 AT2G43010.4 66.667 81 24 1 445 522 233 313 1.30e-20 95.5
Msa0269960 AT2G43010.3 66.667 81 24 1 445 522 240 320 1.41e-20 95.5
Msa0269960 AT2G43010.5 66.667 81 24 1 445 522 275 355 2.05e-20 95.5
Msa0269960 AT4G28790.2 48.000 100 40 2 421 520 244 331 8.67e-20 92.0
Msa0269960 AT2G24260.2 60.317 63 25 0 462 524 37 99 1.71e-19 89.0
Msa0269960 AT5G58010.1 53.947 76 31 1 462 533 101 176 3.49e-19 89.4
Msa0269960 AT2G24260.1 60.317 63 25 0 462 524 140 202 7.07e-19 89.4
Msa0269960 AT4G30980.1 58.730 63 26 0 462 524 132 194 1.30e-18 87.8
Msa0269960 AT5G61270.2 48.246 114 48 3 423 536 45 147 2.88e-18 86.3
Msa0269960 AT5G61270.3 48.246 114 48 3 423 536 45 147 2.88e-18 86.3
Msa0269960 AT4G30980.2 58.730 63 26 0 462 524 180 242 3.32e-18 87.4
Msa0269960 AT5G61270.1 48.246 114 48 3 423 536 133 235 5.49e-18 87.0
Msa0269960 AT4G28811.1 41.916 167 72 5 392 545 292 446 9.85e-17 84.3
Msa0269960 AT1G68920.1 31.795 195 103 6 357 533 195 377 2.59e-15 79.7
Msa0269960 AT1G68920.4 31.795 195 103 6 357 533 195 377 2.59e-15 79.7
Msa0269960 AT1G68920.2 31.795 195 103 6 357 533 195 377 2.59e-15 79.7
Msa0269960 AT1G68920.3 49.315 73 36 1 462 533 304 376 2.84e-15 79.7
Msa0269960 AT5G50915.3 53.125 64 29 1 462 524 138 201 3.64e-15 76.6
Msa0269960 AT5G50915.4 53.125 64 29 1 462 524 138 201 3.64e-15 76.6
Msa0269960 AT1G10120.2 47.945 73 37 1 462 533 208 280 4.53e-15 78.2
Msa0269960 AT1G10120.1 47.945 73 37 1 462 533 208 280 4.53e-15 78.2
Msa0269960 AT5G50915.1 53.125 64 29 1 462 524 138 201 5.24e-15 76.6
Msa0269960 AT5G50915.2 53.125 64 29 1 462 524 138 201 5.24e-15 76.6
Msa0269960 AT1G02340.2 47.727 88 44 2 474 559 134 221 9.20e-15 75.9
Msa0269960 AT1G02340.1 47.727 88 44 2 474 559 141 228 9.92e-15 75.9
Msa0269960 AT2G18300.1 45.333 75 40 1 462 535 187 261 1.98e-14 75.9
Msa0269960 AT2G18300.2 45.333 75 40 1 462 535 187 261 2.10e-14 75.5
Msa0269960 AT3G23690.1 44.156 77 42 1 462 537 193 269 2.32e-14 75.9
Msa0269960 AT4G36540.2 45.205 73 39 1 462 533 143 215 2.74e-14 74.7
Msa0269960 AT2G18300.3 44.156 77 42 1 462 537 187 263 2.80e-14 75.5
Msa0269960 AT4G36540.1 45.205 73 39 1 462 533 143 215 2.86e-14 74.7
Msa0269960 AT5G62610.2 51.562 64 30 1 462 524 155 218 4.07e-14 73.9
Msa0269960 AT5G62610.1 51.562 64 30 1 462 524 155 218 4.07e-14 73.9
Msa0269960 AT2G14760.1 38.462 104 49 3 458 561 235 323 5.47e-14 74.3
Msa0269960 AT1G59640.1 50.000 64 31 1 462 524 138 201 5.50e-14 73.2
Msa0269960 AT3G07340.2 51.562 64 30 1 462 524 260 323 6.30e-14 75.1
Msa0269960 AT2G14760.3 37.931 116 51 4 452 561 236 336 6.99e-14 73.9
Msa0269960 AT3G07340.1 51.562 64 30 1 462 524 260 323 7.29e-14 75.1
Msa0269960 AT5G48560.2 51.562 64 30 1 462 524 303 366 9.65e-14 74.7
Msa0269960 AT5G48560.1 51.562 64 30 1 462 524 303 366 1.16e-13 74.7
Msa0269960 AT4G33880.1 40.000 100 45 3 458 557 264 348 1.18e-13 73.6
Msa0269960 AT4G34530.1 41.667 72 41 1 462 532 174 245 1.75e-13 72.8
Msa0269960 AT1G26260.3 48.438 64 32 1 462 524 174 237 2.81e-13 72.4
Msa0269960 AT5G43175.1 41.250 80 39 2 451 530 130 201 2.81e-13 70.5
Msa0269960 AT1G26260.5 48.438 64 32 1 462 524 203 266 2.88e-13 72.4
Msa0269960 AT2G42300.4 43.836 73 40 1 462 533 187 259 2.94e-13 71.2
Msa0269960 AT1G26260.4 48.438 64 32 1 462 524 225 288 3.40e-13 72.4
Msa0269960 AT1G26260.1 48.438 64 32 1 462 524 225 288 3.40e-13 72.4
Msa0269960 AT1G26260.6 48.438 64 32 1 462 524 225 288 3.40e-13 72.4
Msa0269960 AT1G26260.2 48.438 64 32 1 462 524 225 288 3.40e-13 72.4
Msa0269960 AT1G59640.2 50.000 64 31 1 462 524 138 201 3.58e-13 72.0
Msa0269960 AT2G42300.1 43.836 73 40 1 462 533 187 259 5.36e-13 71.2
Msa0269960 AT1G27740.1 36.066 122 58 5 440 561 152 253 5.45e-13 70.1
Msa0269960 AT3G57800.2 42.466 73 41 1 462 533 206 278 1.77e-12 70.1
Msa0269960 AT1G18400.2 46.875 64 33 1 462 524 147 210 2.23e-12 68.2
Msa0269960 AT1G18400.1 46.875 64 33 1 462 524 147 210 2.56e-12 68.2
Msa0269960 AT1G25330.1 45.312 64 34 1 462 524 106 169 4.18e-12 67.0
Msa0269960 AT1G73830.2 43.750 64 35 1 462 524 149 212 1.07e-11 66.2
Msa0269960 AT1G73830.1 43.750 64 35 1 462 524 149 212 1.19e-11 66.2

Find 233 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGAAAATTGCACAGATTT+TGG 0.143105 2_3:+1233565 Msa0269960:three_prime_UTR
AATGCAATATTTAAGAAGTT+TGG 0.188590 2_3:-1229390 None:intergenic
GTAATGGGAATCAGATATTT+AGG 0.194680 2_3:+1230731 Msa0269960:CDS
CGCCGCCTTCTTCGTCCATT+TGG 0.199275 2_3:+1229360 Msa0269960:five_prime_UTR
CTTTGTCTTCAAACTTCATT+TGG 0.201765 2_3:+1229967 Msa0269960:five_prime_UTR
GATCTTTCATAGTGATTCTT+TGG 0.204839 2_3:+1233685 Msa0269960:three_prime_UTR
CAACCTTCCATTCAAGTTCT+TGG 0.207186 2_3:+1231396 Msa0269960:CDS
TCACCAAACTTTCCTATCTT+TGG 0.207484 2_3:-1230523 None:intergenic
TGAATCAGTGGGAGTTAAAA+AGG 0.229978 2_3:+1231680 Msa0269960:CDS
CTAAACCATGGTTAATGTTT+TGG 0.237543 2_3:-1229250 None:intergenic
TACTCAAGGGTTTGGACTTC+CGG 0.238298 2_3:+1232772 Msa0269960:CDS
GGACACACAGCTGCTGAAAA+AGG 0.246020 2_3:+1231435 Msa0269960:CDS
TTCAGCAGCACGGCTTCTTT+TGG 0.263273 2_3:-1231730 None:intergenic
TAGCTGCAGGCCTTGCAAAA+TGG 0.265088 2_3:-1231074 None:intergenic
GAACCATTGCCAGGCATTAT+AGG 0.273673 2_3:-1231033 None:intergenic
AAAGATGAGAAACGACATTT+TGG 0.278685 2_3:-1233453 None:intergenic
GGCTCTTTGCAACACGAATA+TGG 0.299730 2_3:+1230634 Msa0269960:CDS
AAATATCCTCTTCAGTAATC+TGG 0.302622 2_3:-1233487 None:intergenic
ACCTTATGACAGCGCATTTC+CGG 0.308325 2_3:-1231258 None:intergenic
AAACTAACCTTATTGCAATT+AGG 0.311300 2_3:-1231936 None:intergenic
ATGCAATATTTAAGAAGTTT+GGG 0.315431 2_3:-1229389 None:intergenic
GCATTTGGTTCAAGCAATTT+CGG 0.321748 2_3:-1231318 None:intergenic
ATTATTAACTTACTTCACTA+TGG 0.325057 2_3:-1231575 None:intergenic
AGAACCGATGAATGTTTCTA+AGG 0.325663 2_3:+1230774 Msa0269960:CDS
TTCCGTTTCAAATCTCGATT+TGG 0.325821 2_3:-1231525 None:intergenic
CATCTGTAACTGTTAGATCT+AGG 0.327984 2_3:+1230887 Msa0269960:CDS
GGTAACCAGGACGTGCCTTA+TGG 0.332319 2_3:+1230946 Msa0269960:CDS
AGCTGCAGGCCTTGCAAAAT+GGG 0.334857 2_3:-1231073 None:intergenic
AGGGATAAACAGACCTGGTT+AGG 0.337445 2_3:-1233013 None:intergenic
CATGCATATGGGGTTAGGTA+TGG 0.343215 2_3:+1232610 Msa0269960:CDS
GCCGCCTTCTTCGTCCATTT+GGG 0.347498 2_3:+1229361 Msa0269960:five_prime_UTR
ATAAGAGGCCCTCCTGAAAA+AGG 0.349955 2_3:-1232836 None:intergenic
ACTCAAGGGTTTGGACTTCC+GGG 0.350946 2_3:+1232773 Msa0269960:CDS
AATGCTAATACTAAGAGCTT+TGG 0.360151 2_3:+1230034 Msa0269960:five_prime_UTR
AATCCAAAGATAGGAAAGTT+TGG 0.360484 2_3:+1230520 Msa0269960:CDS
GATAACTTCTGAGTTGCATT+TGG 0.361157 2_3:+1229447 Msa0269960:five_prime_UTR
TAAGGGTTCTTCAGCTGAAC+AGG 0.362772 2_3:+1230792 Msa0269960:CDS
CACTATGAAAGATCTGAATA+AGG 0.369825 2_3:-1233676 None:intergenic
CAGTGACACACGCACACAAC+TGG 0.374364 2_3:-1229306 None:intergenic
GCCTCTTCTTCTGTTTGCTC+TGG 0.374903 2_3:+1231474 Msa0269960:CDS
AGAATCAGTGTCACTGTATT+CGG 0.376615 2_3:+1229601 Msa0269960:five_prime_UTR
AGTAATAACAATCCAAAGAT+AGG 0.377772 2_3:+1230511 Msa0269960:CDS
TCTTTATGAGTTATACCGTT+TGG 0.379797 2_3:+1230128 Msa0269960:CDS
AATCACAAATTTGTATTGCC+TGG 0.381522 2_3:-1233236 None:intergenic
ATGGGGTTAGGTATGGGTTA+TGG 0.384832 2_3:+1232617 Msa0269960:CDS
ATCTGAGGTACTTGAATCAT+TGG 0.390961 2_3:-1232680 None:intergenic
GTAACCAGGACGTGCCTTAT+GGG 0.391349 2_3:+1230947 Msa0269960:CDS
TTAATTTGTGAGTCCACATC+TGG 0.393466 2_3:-1232953 None:intergenic
GATGGGCATTGGCATGCATA+TGG 0.394802 2_3:+1232598 Msa0269960:CDS
ACTCATACCTAATTGCAATA+AGG 0.396247 2_3:+1231929 Msa0269960:CDS
TGTTTAGTAGCTACAGCATT+TGG 0.397325 2_3:-1231333 None:intergenic
GTTATAGGAGTTAAGAATAA+AGG 0.400952 2_3:+1231165 Msa0269960:CDS
GCGGCTGGACGAGGAGTTGC+AGG 0.404515 2_3:+1231705 Msa0269960:CDS
AGGCAATACAAATTTGTGAT+TGG 0.410430 2_3:+1233238 Msa0269960:exon
TCCTTTGAACACTCACCGCT+TGG 0.414948 2_3:-1231234 None:intergenic
CAGTCAACTTTGGTGCATAA+TGG 0.417435 2_3:+1233173 Msa0269960:intron
AGATCGAATACTCAAGGGTT+TGG 0.418683 2_3:+1232764 Msa0269960:CDS
TCAGCAAGATCAGATGTTAT+AGG 0.425064 2_3:+1231150 Msa0269960:CDS
AACAGACCTGGTTAGGGATC+TGG 0.426475 2_3:-1233006 None:intergenic
GAATGATATTTACTTGAACT+TGG 0.428430 2_3:-1232405 None:intergenic
CGGTGAGTGTTCAAAGGAAC+CGG 0.431291 2_3:+1231239 Msa0269960:CDS
TACCTCTACTTGATTGACCT+TGG 0.431493 2_3:-1230399 None:intergenic
GCTCCGGGTCCGTCTGTGTA+TGG 0.432008 2_3:+1232869 Msa0269960:CDS
TCTTCTGTTTGCTCTGGCAA+TGG 0.432421 2_3:+1231480 Msa0269960:CDS
TTTGAGCTGGTTTGGGAGAG+TGG 0.433011 2_3:+1230364 Msa0269960:CDS
GGTCCAGGCATATGCGCAAC+GGG 0.433702 2_3:-1232719 None:intergenic
CTTCATTTGGATTCCAAAGG+TGG 0.435654 2_3:+1229980 Msa0269960:five_prime_UTR
AATGCCGGACCATGCGTCAT+TGG 0.435957 2_3:-1232812 None:intergenic
AGGGTTTGGACTTCCGGGAC+AGG 0.436904 2_3:+1232778 Msa0269960:CDS
GACGGCCCGCCGTTCATGTC+AGG 0.437600 2_3:-1232650 None:intergenic
CAGAACATAGGCTTGAAGTC+TGG 0.440984 2_3:+1231114 Msa0269960:CDS
CTGATTCTCGGCTGAGATCA+AGG 0.445045 2_3:-1229586 None:intergenic
ATTGGCATGCATATGGGGTT+AGG 0.446687 2_3:+1232605 Msa0269960:CDS
TCGCGAGATGGCACCGACAT+TGG 0.449982 2_3:-1230571 None:intergenic
ATTGCTTCCAACATATTCTT+CGG 0.452650 2_3:-1230014 None:intergenic
CTTGGTGACAATGGCGCTAA+AGG 0.455067 2_3:+1231414 Msa0269960:CDS
ATGCCCGTTGCGCATATGCC+TGG 0.457121 2_3:+1232716 Msa0269960:CDS
ACCGGAAATGCGCTGTCATA+AGG 0.458097 2_3:+1231257 Msa0269960:CDS
ATGGGCATTGGCATGCATAT+GGG 0.458445 2_3:+1232599 Msa0269960:CDS
TCGTGGCTAGTAGAAGAATC+AGG 0.460029 2_3:+1233414 Msa0269960:three_prime_UTR
GGATTAACAAGAGCTGAATC+AGG 0.461722 2_3:-1231213 None:intergenic
TTAGGTATGGGTTATGGAAT+GGG 0.462375 2_3:+1232623 Msa0269960:CDS
AAGTTTGGTGATTTAGACTC+TGG 0.465005 2_3:+1230535 Msa0269960:CDS
AATACAGTGACACTGATTCT+CGG 0.465480 2_3:-1229598 None:intergenic
ATTACATTGGAACCATTGCC+AGG 0.465626 2_3:-1231042 None:intergenic
TGGATTTAAACAGTCAACTT+TGG 0.465882 2_3:+1233163 Msa0269960:intron
TATTGGATAAAAGAAGTAAT+GGG 0.466226 2_3:+1230716 Msa0269960:CDS
GTAGAAAGAGTCCATCTTGT+AGG 0.469763 2_3:+1230419 Msa0269960:CDS
ACATGTTGAAGCTGTGAATC+CGG 0.471250 2_3:+1232901 Msa0269960:CDS
GCCTTGGTTGGATTATTCAA+TGG 0.473067 2_3:+1230609 Msa0269960:CDS
ATTCCATTCTCTTTGCAAGC+AGG 0.474924 2_3:-1231363 None:intergenic
TAATGGGAATCAGATATTTA+GGG 0.478431 2_3:+1230732 Msa0269960:CDS
TCTTATGAACTCATCCGCTC+CGG 0.478517 2_3:+1232853 Msa0269960:CDS
TGGTTGGATTATTCAATGGA+TGG 0.481215 2_3:+1230613 Msa0269960:CDS
CAAAGGTTTCAAATCAGCCT+TGG 0.482518 2_3:-1231292 None:intergenic
CATGCCAATGACGCATGGTC+CGG 0.486367 2_3:+1232808 Msa0269960:CDS
CCAGCAGGTAACATCATTTG+AGG 0.491436 2_3:-1232533 None:intergenic
GACAGTGAAGCTGCTAATCC+AGG 0.492549 2_3:+1233218 Msa0269960:CDS
ATGCATATGGGGTTAGGTAT+GGG 0.496323 2_3:+1232611 Msa0269960:CDS
AAACTTCATTTGGATTCCAA+AGG 0.498356 2_3:+1229977 Msa0269960:five_prime_UTR
ATTGTCACCAAGAACTTGAA+TGG 0.502299 2_3:-1231403 None:intergenic
ATCCAAATCGAGATTTGAAA+CGG 0.502394 2_3:+1231523 Msa0269960:CDS
TTTGAGCCACACGCTGAAGC+CGG 0.503540 2_3:-1232920 None:intergenic
CTATTGGATAAAAGAAGTAA+TGG 0.505191 2_3:+1230715 Msa0269960:CDS
ATCTCACTCATAGTTTATTG+TGG 0.506699 2_3:+1229925 Msa0269960:intron
CAAATTAAGCAAAACACTGC+TGG 0.508355 2_3:+1232968 Msa0269960:CDS
AGTTTATTGTGGCTTACGAC+GGG 0.508407 2_3:+1229936 Msa0269960:intron
AAGCCTGCTTGCAAAGAGAA+TGG 0.512967 2_3:+1231360 Msa0269960:CDS
GTTTGACATTGATTCGATGA+TGG 0.513871 2_3:-1230862 None:intergenic
CAATAGAGTAAAACTATTCG+AGG 0.514401 2_3:-1230698 None:intergenic
CTTATGAACTCATCCGCTCC+GGG 0.516950 2_3:+1232854 Msa0269960:CDS
CCTCAAATGATGTTACCTGC+TGG 0.519335 2_3:+1232533 Msa0269960:CDS
ATCTGTAACTGTTAGATCTA+GGG 0.521505 2_3:+1230888 Msa0269960:CDS
GGTGGATAAAGCTTCTATGC+TGG 0.522318 2_3:+1232348 Msa0269960:intron
TCAAGCAATTTCGGCTGCAA+AGG 0.523909 2_3:-1231309 None:intergenic
TGATTTCTTTCATGAACTCA+CGG 0.530210 2_3:+1230660 Msa0269960:CDS
AAACGGTATAACTCATAAAG+AGG 0.530629 2_3:-1230126 None:intergenic
GGAGCGGATGAGTTCATAAG+AGG 0.531123 2_3:-1232851 None:intergenic
GGCATGGAAATTCCCTGTCC+CGG 0.531882 2_3:-1232791 None:intergenic
GGGTTTGGACTTCCGGGACA+GGG 0.531895 2_3:+1232779 Msa0269960:CDS
TCTTACGCAGATGATGTCAA+TGG 0.532008 2_3:+1232493 Msa0269960:intron
TCACCAAGAACTTGAATGGA+AGG 0.535249 2_3:-1231399 None:intergenic
GGGATAAACAGACCTGGTTA+GGG 0.536075 2_3:-1233012 None:intergenic
GTTAGGTATGGGTTATGGAA+TGG 0.536992 2_3:+1232622 Msa0269960:CDS
GCCAGAGCAAACAGAAGAAG+AGG 0.539271 2_3:-1231475 None:intergenic
AAGCAAGATCCTATAATGCC+TGG 0.540589 2_3:+1231024 Msa0269960:CDS
TGCATGTGCTGCATTCCAGC+AGG 0.541526 2_3:-1232548 None:intergenic
GTATACAGAGGCGAAGAGAC+AGG 0.541533 2_3:+1231877 Msa0269960:intron
TTAGCTCTCACAATAGCTGC+AGG 0.542020 2_3:-1231087 None:intergenic
AGAGTAAAACTATTCGAGGC+AGG 0.545061 2_3:-1230694 None:intergenic
GTGAATCCGGCTTCAGCGTG+TGG 0.545306 2_3:+1232914 Msa0269960:CDS
AGATGAAATGATGCCTTGGT+TGG 0.547275 2_3:+1230597 Msa0269960:CDS
ACTTTAATTGAAGGATGTTG+AGG 0.547453 2_3:+1231656 Msa0269960:intron
CCGTCTGTGTATGGATCCAC+AGG 0.548020 2_3:+1232878 Msa0269960:CDS
GGTTTCAAATCAGCCTTGGA+TGG 0.548035 2_3:-1231288 None:intergenic
ACGTCTTTATCTCGACCTCT+AGG 0.548572 2_3:-1230475 None:intergenic
TATCCCCATAAGGCACGTCC+TGG 0.548638 2_3:-1230951 None:intergenic
TAATGTTAGCAGTGGTAACC+AGG 0.548677 2_3:+1230933 Msa0269960:CDS
AAACCCTTGAGTATTCGATC+TGG 0.548724 2_3:-1232762 None:intergenic
AGTGCATAATCTATCTGAAA+GGG 0.548993 2_3:+1231752 Msa0269960:CDS
AAGGTTTCTATTCTAAACCA+TGG 0.549756 2_3:-1229262 None:intergenic
GATAACACCGAAGAATATGT+TGG 0.549773 2_3:+1230007 Msa0269960:five_prime_UTR
AAGTTTGGGAATGACCCAAA+TGG 0.550042 2_3:-1229375 None:intergenic
GCACATGCATGCACCACACA+TGG 0.551028 2_3:+1232562 Msa0269960:CDS
GACTAACGGCGCAAGTGTAG+CGG 0.551051 2_3:+1230173 Msa0269960:CDS
CCTGGACCCTCTGCTATGCA+TGG 0.553478 2_3:+1232734 Msa0269960:CDS
GAATGCCTGACATGAACGGC+GGG 0.554517 2_3:+1232645 Msa0269960:CDS
CGAGATAAAGACGTAGGAGG+AGG 0.554717 2_3:+1230484 Msa0269960:CDS
ATTCAAGTTCTTGGTGACAA+TGG 0.555532 2_3:+1231405 Msa0269960:CDS
CTTACGCAGATGATGTCAAT+GGG 0.556698 2_3:+1232494 Msa0269960:intron
ATTTCATCTACTTCGCGAGA+TGG 0.557156 2_3:-1230583 None:intergenic
ATGCGAGTAATATCCCCATA+AGG 0.560313 2_3:-1230961 None:intergenic
TTCAAACCAGATTACTGAAG+AGG 0.561206 2_3:+1233481 Msa0269960:three_prime_UTR
CAAGCTTCTCTCTAGCCAAA+CGG 0.561344 2_3:-1230143 None:intergenic
GAACCGATGAATGTTTCTAA+GGG 0.563235 2_3:+1230775 Msa0269960:CDS
AGATTATTCACACAACAAGA+AGG 0.563365 2_3:-1229483 None:intergenic
AGAGCTAATCTTCAGAACAT+AGG 0.563549 2_3:+1231102 Msa0269960:CDS
TAATGGTGGCCATGCTTCAG+TGG 0.563671 2_3:+1233190 Msa0269960:CDS
TAAAGCTTCTATGCTGGATG+AGG 0.564004 2_3:+1232354 Msa0269960:CDS
TACAAGCCAGATCCCTAACC+AGG 0.569454 2_3:+1233000 Msa0269960:CDS
CAGATGATGTCAATGGGAGC+TGG 0.570696 2_3:+1232500 Msa0269960:intron
TTTACCTGTCAAAATAGCCA+TGG 0.570700 2_3:+1233524 Msa0269960:three_prime_UTR
GGGTCCAGGCATATGCGCAA+CGG 0.570830 2_3:-1232720 None:intergenic
ATATGATTTCCTTGCATCTG+AGG 0.571553 2_3:-1232695 None:intergenic
CCATGCATAGCAGAGGGTCC+AGG 0.572604 2_3:-1232734 None:intergenic
GTGTGCGTGTGTCACTGCAT+TGG 0.574052 2_3:+1229312 Msa0269960:five_prime_UTR
TTCGGAGACTAGAATTCCCA+TGG 0.575489 2_3:-1233541 None:intergenic
CTTAACCAAAACATTAACCA+TGG 0.575886 2_3:+1229245 Msa0269960:five_prime_UTR
TGGGCATTGGCATGCATATG+GGG 0.575943 2_3:+1232600 Msa0269960:CDS
GTCACTTACTTTACTTGACA+AGG 0.577238 2_3:+1229698 Msa0269960:five_prime_UTR
ATGGCCAGATCGAATACTCA+AGG 0.580647 2_3:+1232758 Msa0269960:CDS
TCCAAGCGGTGAGTGTTCAA+AGG 0.581477 2_3:+1231233 Msa0269960:CDS
TAGTTTATTGTGGCTTACGA+CGG 0.581545 2_3:+1229935 Msa0269960:intron
GAAAATAATAATGTTAGCAG+TGG 0.582796 2_3:+1230925 Msa0269960:CDS
ACCCTCTGCTATGCATGGAA+TGG 0.583329 2_3:+1232739 Msa0269960:CDS
ATGACCCAAATGGACGAAGA+AGG 0.585238 2_3:-1229365 None:intergenic
GCACTAATCAGCATATAAGT+CGG 0.586456 2_3:-1229639 None:intergenic
AAAAGATCGAAGGCCAGATG+TGG 0.594060 2_3:+1232940 Msa0269960:CDS
GATCCTATAATGCCTGGCAA+TGG 0.595775 2_3:+1231030 Msa0269960:CDS
AAGTGCATAATCTATCTGAA+AGG 0.598272 2_3:+1231751 Msa0269960:CDS
GCAAGACATAAAGCTAGTGC+CGG 0.602436 2_3:+1230826 Msa0269960:CDS
GATTATGCACTTCAGCAGCA+CGG 0.604449 2_3:-1231740 None:intergenic
CAATGGTGCAGACAGAGGCT+CGG 0.605241 2_3:+1231497 Msa0269960:CDS
TGAGATGGTAAGCAGTGAGA+TGG 0.605275 2_3:-1230448 None:intergenic
CACAGCTTCAACATGTCCTG+TGG 0.605340 2_3:-1232894 None:intergenic
GCCATTCCATGCATAGCAGA+GGG 0.607653 2_3:-1232740 None:intergenic
AGCCAAGGTCAATCAAGTAG+AGG 0.608356 2_3:+1230397 Msa0269960:CDS
CGGACCATGCGTCATTGGCA+TGG 0.608588 2_3:-1232807 None:intergenic
GATCCATACACAGACGGACC+CGG 0.610764 2_3:-1232872 None:intergenic
GATGGCAAACTCCTACAAGA+TGG 0.610890 2_3:-1230430 None:intergenic
ATTTCCATGCCAATGACGCA+TGG 0.613337 2_3:+1232803 Msa0269960:CDS
TCTGGCAATGGTGCAGACAG+AGG 0.613703 2_3:+1231492 Msa0269960:CDS
TAACCAGGACGTGCCTTATG+GGG 0.616802 2_3:+1230948 Msa0269960:CDS
TGTTAATGAACTTACGACGA+AGG 0.616840 2_3:-1230201 None:intergenic
AGTGACACACGCACACAACT+GGG 0.616845 2_3:-1229305 None:intergenic
TGTCATCAGCCACTGAAGCA+TGG 0.619461 2_3:-1233199 None:intergenic
TTACCTGTCAAAATAGCCAT+GGG 0.619641 2_3:+1233525 Msa0269960:three_prime_UTR
ATTCAAGTACCTCAGATGCA+AGG 0.620716 2_3:+1232686 Msa0269960:CDS
GAACCCTTAGAAACATTCAT+CGG 0.621432 2_3:-1230778 None:intergenic
TAAAACTATTCGAGGCAGGA+AGG 0.623215 2_3:-1230690 None:intergenic
GGCCATTCCATGCATAGCAG+AGG 0.624817 2_3:-1232741 None:intergenic
GATGTTGAGGATGAATCAGT+GGG 0.625050 2_3:+1231669 Msa0269960:CDS
TCAGCTCTTGTTAATCCAAG+CGG 0.627460 2_3:+1231219 Msa0269960:CDS
TGATGGCGGATATAACTGAC+CGG 0.631000 2_3:-1230845 None:intergenic
GGTCGAGATAAAGACGTAGG+AGG 0.631029 2_3:+1230481 Msa0269960:CDS
TGAATCATTGGAAATCTAGA+CGG 0.631570 2_3:-1232668 None:intergenic
ATCAGTGTCACTGTATTCGG+AGG 0.632909 2_3:+1229604 Msa0269960:five_prime_UTR
AAGCTTGATAATGAGACTAA+CGG 0.634639 2_3:+1230159 Msa0269960:CDS
CGTGTGGCTCAAAAGATCGA+AGG 0.637154 2_3:+1232930 Msa0269960:CDS
ATAATGTTAAGATATATAAG+TGG 0.640008 2_3:-1233618 None:intergenic
TCAACTTTGGTGCATAATGG+TGG 0.640234 2_3:+1233176 Msa0269960:CDS
GGATGTTGAGGATGAATCAG+TGG 0.640619 2_3:+1231668 Msa0269960:intron
TTACCATCTCATAGTCCTAG+AGG 0.648723 2_3:+1230460 Msa0269960:CDS
CGACCTCTAGGACTATGAGA+TGG 0.648898 2_3:-1230463 None:intergenic
AGTGGTCAGATTTCAAGCCA+AGG 0.648899 2_3:+1230382 Msa0269960:CDS
ATGGGAATGCCTGACATGAA+CGG 0.649844 2_3:+1232641 Msa0269960:CDS
GGAAATGCGCTGTCATAAGG+TGG 0.651300 2_3:+1231260 Msa0269960:CDS
AAGTAGATGAAATGATGCCT+TGG 0.653879 2_3:+1230593 Msa0269960:CDS
TCCATTGAATAATCCAACCA+AGG 0.654964 2_3:-1230610 None:intergenic
TGACATTGATTCGATGATGG+CGG 0.655078 2_3:-1230859 None:intergenic
TAAGGTGGTAGAGCCATCCA+AGG 0.655378 2_3:+1231275 Msa0269960:CDS
TGTGAAAATGCGGCCATGTG+TGG 0.658564 2_3:-1232575 None:intergenic
ACCCAAATGGACGAAGAAGG+CGG 0.661772 2_3:-1229362 None:intergenic
GGAATGCCTGACATGAACGG+CGG 0.663426 2_3:+1232644 Msa0269960:CDS
TGGCCAGATCGAATACTCAA+GGG 0.668407 2_3:+1232759 Msa0269960:CDS
TTGATACTCTGCATTGATCG+TGG 0.671849 2_3:+1233397 Msa0269960:three_prime_UTR
AGAGGTCGAGATAAAGACGT+AGG 0.676780 2_3:+1230478 Msa0269960:CDS
CCTGTGGATCCATACACAGA+CGG 0.678896 2_3:-1232878 None:intergenic
TTAACAAGAGCTGAATCAGG+AGG 0.682638 2_3:-1231210 None:intergenic
ATTGAATGAGATTCCAATGT+CGG 0.685130 2_3:+1230558 Msa0269960:CDS
ATACACAGACGGACCCGGAG+CGG 0.699444 2_3:-1232867 None:intergenic
AATGCCCATCTGTGAAAATG+CGG 0.705158 2_3:-1232585 None:intergenic
ACGGAAAAGTAGAGACACTG+AGG 0.744015 2_3:+1231542 Msa0269960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGATTAAAAAATTAAGAT+TGG + chr2_3:1229669-1229688 Msa0269960:five_prime_UTR 10.0%
!!! ATAATTTTATACAGTTTTTC+AGG - chr2_3:1231994-1232013 None:intergenic 15.0%
!! TGAAAAACTGTATAAAATTA+TGG + chr2_3:1231993-1232012 Msa0269960:intron 15.0%
!! CAAAAGATTTATGAAATTAT+TGG + chr2_3:1232107-1232126 Msa0269960:intron 15.0%
!!! ACTTAATTCCTTATTTATTT+CGG + chr2_3:1232302-1232321 Msa0269960:intron 15.0%
!! AGAATAACAGAAAATTATTA+CGG - chr2_3:1233085-1233104 None:intergenic 15.0%
!! ATAATGTTAAGATATATAAG+TGG - chr2_3:1233621-1233640 None:intergenic 15.0%
!! ATGCAATATTTAAGAAGTTT+GGG - chr2_3:1229392-1229411 None:intergenic 20.0%
!! AATGCAATATTTAAGAAGTT+TGG - chr2_3:1229393-1229412 None:intergenic 20.0%
!!! TTTCTTAGTTTTGTTTGTTT+TGG + chr2_3:1230306-1230325 Msa0269960:intron 20.0%
!! TATTGGATAAAAGAAGTAAT+GGG + chr2_3:1230716-1230735 Msa0269960:CDS 20.0%
!! ATTATTAACTTACTTCACTA+TGG - chr2_3:1231578-1231597 None:intergenic 20.0%
!!! AGCTTATTTTATTTCCATTT+CGG + chr2_3:1231836-1231855 Msa0269960:intron 20.0%
!! ATCATAATTTATGTATACAG+AGG + chr2_3:1231865-1231884 Msa0269960:intron 20.0%
!! TGTTGACAAATATAGAATAT+TGG + chr2_3:1232030-1232049 Msa0269960:intron 20.0%
!! TTCATTGATAAAGACTCTTT+TGG + chr2_3:1229816-1229835 Msa0269960:intron 25.0%
!! TCATTGATAAAGACTCTTTT+GGG + chr2_3:1229817-1229836 Msa0269960:intron 25.0%
! TGTTTGATCATGAAATGAAA+TGG + chr2_3:1230261-1230280 Msa0269960:intron 25.0%
! AGTAATAACAATCCAAAGAT+AGG + chr2_3:1230511-1230530 Msa0269960:CDS 25.0%
! CTATTGGATAAAAGAAGTAA+TGG + chr2_3:1230715-1230734 Msa0269960:CDS 25.0%
! TAATGGGAATCAGATATTTA+GGG + chr2_3:1230732-1230751 Msa0269960:CDS 25.0%
! GAAAATAATAATGTTAGCAG+TGG + chr2_3:1230925-1230944 Msa0269960:CDS 25.0%
! ATGGGAAAAATTCATTACAT+TGG - chr2_3:1231058-1231077 None:intergenic 25.0%
! GTTATAGGAGTTAAGAATAA+AGG + chr2_3:1231165-1231184 Msa0269960:CDS 25.0%
!!! CTTCAATTAAAGTGTTTTCT+TGG - chr2_3:1231649-1231668 None:intergenic 25.0%
! CAAGAAAACACTTTAATTGA+AGG + chr2_3:1231647-1231666 Msa0269960:intron 25.0%
! AAACTAACCTTATTGCAATT+AGG - chr2_3:1231939-1231958 None:intergenic 25.0%
! TTGAATACACTTCATGAATA+CGG - chr2_3:1232181-1232200 None:intergenic 25.0%
!!! TTTTTTTGAACAAGCCAAAA+TGG - chr2_3:1232230-1232249 None:intergenic 25.0%
! GAATGATATTTACTTGAACT+TGG - chr2_3:1232408-1232427 None:intergenic 25.0%
! AACTAAAATATTAATGCCGA+GGG - chr2_3:1232432-1232451 None:intergenic 25.0%
! AAACTAAAATATTAATGCCG+AGG - chr2_3:1232433-1232452 None:intergenic 25.0%
CTTAACCAAAACATTAACCA+TGG + chr2_3:1229245-1229264 Msa0269960:five_prime_UTR 30.0%
! CTAAACCATGGTTAATGTTT+TGG - chr2_3:1229253-1229272 None:intergenic 30.0%
AAGGTTTCTATTCTAAACCA+TGG - chr2_3:1229265-1229284 None:intergenic 30.0%
AGACAAAAACAGGGAAAAAA+AGG - chr2_3:1229284-1229303 None:intergenic 30.0%
AGATTATTCACACAACAAGA+AGG - chr2_3:1229486-1229505 None:intergenic 30.0%
TCCAGTTGAAAAATGATAAC+TGG + chr2_3:1229540-1229559 Msa0269960:five_prime_UTR 30.0%
CCAGTTGAAAAATGATAACT+GGG + chr2_3:1229541-1229560 Msa0269960:five_prime_UTR 30.0%
AAAAATGATAACTGGGTCAT+TGG + chr2_3:1229548-1229567 Msa0269960:five_prime_UTR 30.0%
! CATTGATAAAGACTCTTTTG+GGG + chr2_3:1229818-1229837 Msa0269960:intron 30.0%
ATCTCACTCATAGTTTATTG+TGG + chr2_3:1229925-1229944 Msa0269960:intron 30.0%
CTTTGTCTTCAAACTTCATT+TGG + chr2_3:1229967-1229986 Msa0269960:five_prime_UTR 30.0%
AAACTTCATTTGGATTCCAA+AGG + chr2_3:1229977-1229996 Msa0269960:five_prime_UTR 30.0%
ATTGCTTCCAACATATTCTT+CGG - chr2_3:1230017-1230036 None:intergenic 30.0%
AATGCTAATACTAAGAGCTT+TGG + chr2_3:1230034-1230053 Msa0269960:five_prime_UTR 30.0%
!!! AGCTTTGGTTTTTTGATTTG+TGG + chr2_3:1230049-1230068 Msa0269960:five_prime_UTR 30.0%
AAACGGTATAACTCATAAAG+AGG - chr2_3:1230129-1230148 None:intergenic 30.0%
TCTTTATGAGTTATACCGTT+TGG + chr2_3:1230128-1230147 Msa0269960:CDS 30.0%
!! AAGCTTGATAATGAGACTAA+CGG + chr2_3:1230159-1230178 Msa0269960:CDS 30.0%
!! TGGATTTGATTTGAATGTGT+AGG + chr2_3:1230326-1230345 Msa0269960:intron 30.0%
AGCTCAAAAAAATCATTCTC+AGG - chr2_3:1230352-1230371 None:intergenic 30.0%
!!! TGAGAATGATTTTTTTGAGC+TGG + chr2_3:1230351-1230370 Msa0269960:CDS 30.0%
!!! ATGATTTTTTTGAGCTGGTT+TGG + chr2_3:1230356-1230375 Msa0269960:CDS 30.0%
!!! TGATTTTTTTGAGCTGGTTT+GGG + chr2_3:1230357-1230376 Msa0269960:CDS 30.0%
AATCCAAAGATAGGAAAGTT+TGG + chr2_3:1230520-1230539 Msa0269960:CDS 30.0%
ATTGAATGAGATTCCAATGT+CGG + chr2_3:1230558-1230577 Msa0269960:CDS 30.0%
TGATTTCTTTCATGAACTCA+CGG + chr2_3:1230660-1230679 Msa0269960:CDS 30.0%
CAATAGAGTAAAACTATTCG+AGG - chr2_3:1230701-1230720 None:intergenic 30.0%
!! CTCGAATAGTTTTACTCTAT+TGG + chr2_3:1230699-1230718 Msa0269960:CDS 30.0%
! GTAATGGGAATCAGATATTT+AGG + chr2_3:1230731-1230750 Msa0269960:CDS 30.0%
ATCTGTAACTGTTAGATCTA+GGG + chr2_3:1230888-1230907 Msa0269960:CDS 30.0%
! TGAATTTTTCCCATTTTGCA+AGG + chr2_3:1231064-1231083 Msa0269960:CDS 30.0%
ATCCAAATCGAGATTTGAAA+CGG + chr2_3:1231523-1231542 Msa0269960:CDS 30.0%
! GTGTTTTCTTGGTTTATAGA+GGG - chr2_3:1231638-1231657 None:intergenic 30.0%
! AGTGTTTTCTTGGTTTATAG+AGG - chr2_3:1231639-1231658 None:intergenic 30.0%
ACTTTAATTGAAGGATGTTG+AGG + chr2_3:1231656-1231675 Msa0269960:intron 30.0%
AAGTGCATAATCTATCTGAA+AGG + chr2_3:1231751-1231770 Msa0269960:CDS 30.0%
AGTGCATAATCTATCTGAAA+GGG + chr2_3:1231752-1231771 Msa0269960:CDS 30.0%
AACATGACACAAATAACAGA+TGG - chr2_3:1231787-1231806 None:intergenic 30.0%
TGGAAATAAAATAAGCTCGA+GGG - chr2_3:1231833-1231852 None:intergenic 30.0%
ATGGAAATAAAATAAGCTCG+AGG - chr2_3:1231834-1231853 None:intergenic 30.0%
ACTCATACCTAATTGCAATA+AGG + chr2_3:1231929-1231948 Msa0269960:CDS 30.0%
! AAATGTCAGAAGTTCCATTT+TGG + chr2_3:1232213-1232232 Msa0269960:intron 30.0%
CAGAAATGCCGAAATAAATA+AGG - chr2_3:1232313-1232332 None:intergenic 30.0%
ACTAAAATATTAATGCCGAG+GGG - chr2_3:1232431-1232450 None:intergenic 30.0%
TGAATCATTGGAAATCTAGA+CGG - chr2_3:1232671-1232690 None:intergenic 30.0%
TGGATTTAAACAGTCAACTT+TGG + chr2_3:1233163-1233182 Msa0269960:intron 30.0%
AATCACAAATTTGTATTGCC+TGG - chr2_3:1233239-1233258 None:intergenic 30.0%
AGGCAATACAAATTTGTGAT+TGG + chr2_3:1233238-1233257 Msa0269960:exon 30.0%
TATTGTGAACATGTATCAGT+AGG + chr2_3:1233265-1233284 Msa0269960:intron 30.0%
TACTTTGACATAAAGCATAG+AGG + chr2_3:1233320-1233339 Msa0269960:intron 30.0%
!! ACTTATTGTTTGAGTTGTAC+CGG + chr2_3:1233364-1233383 Msa0269960:intron 30.0%
! AAAGATGAGAAACGACATTT+TGG - chr2_3:1233456-1233475 None:intergenic 30.0%
AAATATCCTCTTCAGTAATC+TGG - chr2_3:1233490-1233509 None:intergenic 30.0%
!!! TCTGTGCAATTTTCTAGTTT+CGG - chr2_3:1233562-1233581 None:intergenic 30.0%
! CTAGAAAATTGCACAGATTT+TGG + chr2_3:1233565-1233584 Msa0269960:three_prime_UTR 30.0%
CACTATGAAAGATCTGAATA+AGG - chr2_3:1233679-1233698 None:intergenic 30.0%
GATCTTTCATAGTGATTCTT+TGG + chr2_3:1233685-1233704 Msa0269960:three_prime_UTR 30.0%
GATAACTTCTGAGTTGCATT+TGG + chr2_3:1229447-1229466 Msa0269960:five_prime_UTR 35.0%
!! CCCAGTTATCATTTTTCAAC+TGG - chr2_3:1229544-1229563 None:intergenic 35.0%
!! AATACAGTGACACTGATTCT+CGG - chr2_3:1229601-1229620 None:intergenic 35.0%
! AGAATCAGTGTCACTGTATT+CGG + chr2_3:1229601-1229620 Msa0269960:five_prime_UTR 35.0%
GCACTAATCAGCATATAAGT+CGG - chr2_3:1229642-1229661 None:intergenic 35.0%
GTCACTTACTTTACTTGACA+AGG + chr2_3:1229698-1229717 Msa0269960:five_prime_UTR 35.0%
TAGTTTATTGTGGCTTACGA+CGG + chr2_3:1229935-1229954 Msa0269960:intron 35.0%
GATAACACCGAAGAATATGT+TGG + chr2_3:1230007-1230026 Msa0269960:five_prime_UTR 35.0%
!!! GATTTGTGGTTTTTTAGCTG+AGG + chr2_3:1230063-1230082 Msa0269960:five_prime_UTR 35.0%
!!! TGGTTTTTTAGCTGAGGTTT+TGG + chr2_3:1230069-1230088 Msa0269960:five_prime_UTR 35.0%
TGTTAATGAACTTACGACGA+AGG - chr2_3:1230204-1230223 None:intergenic 35.0%
TCACCAAACTTTCCTATCTT+TGG - chr2_3:1230526-1230545 None:intergenic 35.0%
! AAGTTTGGTGATTTAGACTC+TGG + chr2_3:1230535-1230554 Msa0269960:CDS 35.0%
AAGTAGATGAAATGATGCCT+TGG + chr2_3:1230593-1230612 Msa0269960:CDS 35.0%
TCCATTGAATAATCCAACCA+AGG - chr2_3:1230613-1230632 None:intergenic 35.0%
TGGTTGGATTATTCAATGGA+TGG + chr2_3:1230613-1230632 Msa0269960:CDS 35.0%
! AGAACCGATGAATGTTTCTA+AGG + chr2_3:1230774-1230793 Msa0269960:CDS 35.0%
! GAACCGATGAATGTTTCTAA+GGG + chr2_3:1230775-1230794 Msa0269960:CDS 35.0%
GAACCCTTAGAAACATTCAT+CGG - chr2_3:1230781-1230800 None:intergenic 35.0%
!! GTTTGACATTGATTCGATGA+TGG - chr2_3:1230865-1230884 None:intergenic 35.0%
CATCTGTAACTGTTAGATCT+AGG + chr2_3:1230887-1230906 Msa0269960:CDS 35.0%
AGAGCTAATCTTCAGAACAT+AGG + chr2_3:1231102-1231121 Msa0269960:CDS 35.0%
TCAGCAAGATCAGATGTTAT+AGG + chr2_3:1231150-1231169 Msa0269960:CDS 35.0%
! GCATTTGGTTCAAGCAATTT+CGG - chr2_3:1231321-1231340 None:intergenic 35.0%
TGTTTAGTAGCTACAGCATT+TGG - chr2_3:1231336-1231355 None:intergenic 35.0%
ATTGTCACCAAGAACTTGAA+TGG - chr2_3:1231406-1231425 None:intergenic 35.0%
! ATTCAAGTTCTTGGTGACAA+TGG + chr2_3:1231405-1231424 Msa0269960:CDS 35.0%
TTCCGTTTCAAATCTCGATT+TGG - chr2_3:1231528-1231547 None:intergenic 35.0%
TGAATCAGTGGGAGTTAAAA+AGG + chr2_3:1231680-1231699 Msa0269960:CDS 35.0%
GAATCAGTGGGAGTTAAAAA+GGG + chr2_3:1231681-1231700 Msa0269960:CDS 35.0%
ATTATGATCATCAGCCGAAA+TGG - chr2_3:1231853-1231872 None:intergenic 35.0%
CTAAGAAGAGCAAAATCAGA+AGG - chr2_3:1231966-1231985 None:intergenic 35.0%
! TAGAATATTGGTTGCCACTA+TGG + chr2_3:1232042-1232061 Msa0269960:intron 35.0%
AGCTAAGTTTGAATCCATAG+TGG - chr2_3:1232059-1232078 None:intergenic 35.0%
AAGTAAATATCATTCCCCCT+CGG + chr2_3:1232413-1232432 Msa0269960:intron 35.0%
CTAAAATATTAATGCCGAGG+GGG - chr2_3:1232430-1232449 None:intergenic 35.0%
! TTAGGTATGGGTTATGGAAT+GGG + chr2_3:1232623-1232642 Msa0269960:CDS 35.0%
! ATCTGAGGTACTTGAATCAT+TGG - chr2_3:1232683-1232702 None:intergenic 35.0%
ATATGATTTCCTTGCATCTG+AGG - chr2_3:1232698-1232717 None:intergenic 35.0%
!! TTAATTTGTGAGTCCACATC+TGG - chr2_3:1232956-1232975 None:intergenic 35.0%
CAAATTAAGCAAAACACTGC+TGG + chr2_3:1232968-1232987 Msa0269960:CDS 35.0%
ACACTAGTATAACAGAGAAG+CGG - chr2_3:1233127-1233146 None:intergenic 35.0%
GTTGACTGTTTAAATCCAAC+AGG - chr2_3:1233161-1233180 None:intergenic 35.0%
TTCAAACCAGATTACTGAAG+AGG + chr2_3:1233481-1233500 Msa0269960:three_prime_UTR 35.0%
TTTACCTGTCAAAATAGCCA+TGG + chr2_3:1233524-1233543 Msa0269960:three_prime_UTR 35.0%
TTACCTGTCAAAATAGCCAT+GGG + chr2_3:1233525-1233544 Msa0269960:three_prime_UTR 35.0%
!! TTGCACAGATTTTGGTATCT+TGG + chr2_3:1233573-1233592 Msa0269960:three_prime_UTR 35.0%
!! TGCACAGATTTTGGTATCTT+GGG + chr2_3:1233574-1233593 Msa0269960:three_prime_UTR 35.0%
CAACTGGGAAGACAAAAACA+GGG - chr2_3:1229293-1229312 None:intergenic 40.0%
ACAACTGGGAAGACAAAAAC+AGG - chr2_3:1229294-1229313 None:intergenic 40.0%
AAGTTTGGGAATGACCCAAA+TGG - chr2_3:1229378-1229397 None:intergenic 40.0%
AGTTTATTGTGGCTTACGAC+GGG + chr2_3:1229936-1229955 Msa0269960:intron 40.0%
CTTCATTTGGATTCCAAAGG+TGG + chr2_3:1229980-1229999 Msa0269960:five_prime_UTR 40.0%
!! GGTGTTATCTTTTCCACCTT+TGG - chr2_3:1229996-1230015 None:intergenic 40.0%
TACCTCTACTTGATTGACCT+TGG - chr2_3:1230402-1230421 None:intergenic 40.0%
GTAGAAAGAGTCCATCTTGT+AGG + chr2_3:1230419-1230438 Msa0269960:CDS 40.0%
TTACCATCTCATAGTCCTAG+AGG + chr2_3:1230460-1230479 Msa0269960:CDS 40.0%
ATTTCATCTACTTCGCGAGA+TGG - chr2_3:1230586-1230605 None:intergenic 40.0%
AGATGAAATGATGCCTTGGT+TGG + chr2_3:1230597-1230616 Msa0269960:CDS 40.0%
GCCTTGGTTGGATTATTCAA+TGG + chr2_3:1230609-1230628 Msa0269960:CDS 40.0%
TAAAACTATTCGAGGCAGGA+AGG - chr2_3:1230693-1230712 None:intergenic 40.0%
AGAGTAAAACTATTCGAGGC+AGG - chr2_3:1230697-1230716 None:intergenic 40.0%
!! TGACATTGATTCGATGATGG+CGG - chr2_3:1230862-1230881 None:intergenic 40.0%
TAATGTTAGCAGTGGTAACC+AGG + chr2_3:1230933-1230952 Msa0269960:CDS 40.0%
ATGCGAGTAATATCCCCATA+AGG - chr2_3:1230964-1230983 None:intergenic 40.0%
TAAGCTAGAAAAATCGCTCG+AGG - chr2_3:1230995-1231014 None:intergenic 40.0%
AAGCAAGATCCTATAATGCC+TGG + chr2_3:1231024-1231043 Msa0269960:CDS 40.0%
ATTACATTGGAACCATTGCC+AGG - chr2_3:1231045-1231064 None:intergenic 40.0%
TTAACAAGAGCTGAATCAGG+AGG - chr2_3:1231213-1231232 None:intergenic 40.0%
GGATTAACAAGAGCTGAATC+AGG - chr2_3:1231216-1231235 None:intergenic 40.0%
TCAGCTCTTGTTAATCCAAG+CGG + chr2_3:1231219-1231238 Msa0269960:CDS 40.0%
CAAAGGTTTCAAATCAGCCT+TGG - chr2_3:1231295-1231314 None:intergenic 40.0%
ATTCCATTCTCTTTGCAAGC+AGG - chr2_3:1231366-1231385 None:intergenic 40.0%
! CAACCTTCCATTCAAGTTCT+TGG + chr2_3:1231396-1231415 Msa0269960:CDS 40.0%
TCACCAAGAACTTGAATGGA+AGG - chr2_3:1231402-1231421 None:intergenic 40.0%
GATGTTGAGGATGAATCAGT+GGG + chr2_3:1231669-1231688 Msa0269960:CDS 40.0%
TCTATCTGAAAGGGTGAGTA+AGG + chr2_3:1231761-1231780 Msa0269960:intron 40.0%
TCGGCATTTCTGACTTCATA+CGG + chr2_3:1232321-1232340 Msa0269960:intron 40.0%
TTTCTGACTTCATACGGACT+AGG + chr2_3:1232327-1232346 Msa0269960:intron 40.0%
TAAAGCTTCTATGCTGGATG+AGG + chr2_3:1232354-1232373 Msa0269960:CDS 40.0%
TGACATCATCTGCGTAAGAT+AGG - chr2_3:1232492-1232511 None:intergenic 40.0%
TCTTACGCAGATGATGTCAA+TGG + chr2_3:1232493-1232512 Msa0269960:intron 40.0%
CTTACGCAGATGATGTCAAT+GGG + chr2_3:1232494-1232513 Msa0269960:intron 40.0%
AATGCCCATCTGTGAAAATG+CGG - chr2_3:1232588-1232607 None:intergenic 40.0%
ATGCATATGGGGTTAGGTAT+GGG + chr2_3:1232611-1232630 Msa0269960:CDS 40.0%
! GTTAGGTATGGGTTATGGAA+TGG + chr2_3:1232622-1232641 Msa0269960:CDS 40.0%
ATTCAAGTACCTCAGATGCA+AGG + chr2_3:1232686-1232705 Msa0269960:CDS 40.0%
AAACCCTTGAGTATTCGATC+TGG - chr2_3:1232765-1232784 None:intergenic 40.0%
AGATCGAATACTCAAGGGTT+TGG + chr2_3:1232764-1232783 Msa0269960:CDS 40.0%
ACATGTTGAAGCTGTGAATC+CGG + chr2_3:1232901-1232920 Msa0269960:CDS 40.0%
GAAAATTGATCACAGAGACC+TGG - chr2_3:1233041-1233060 None:intergenic 40.0%
! CAGTCAACTTTGGTGCATAA+TGG + chr2_3:1233173-1233192 Msa0269960:intron 40.0%
! TCAACTTTGGTGCATAATGG+TGG + chr2_3:1233176-1233195 Msa0269960:CDS 40.0%
GAGTATCAATCATAACCTGC+CGG - chr2_3:1233386-1233405 None:intergenic 40.0%
! TTGATACTCTGCATTGATCG+TGG + chr2_3:1233397-1233416 Msa0269960:three_prime_UTR 40.0%
!!! ATTCCCATGGCTATTTTGAC+AGG - chr2_3:1233531-1233550 None:intergenic 40.0%
!! GCACAGATTTTGGTATCTTG+GGG + chr2_3:1233575-1233594 Msa0269960:three_prime_UTR 40.0%
ATGACCCAAATGGACGAAGA+AGG - chr2_3:1229368-1229387 None:intergenic 45.0%
! ATCAGTGTCACTGTATTCGG+AGG + chr2_3:1229604-1229623 Msa0269960:five_prime_UTR 45.0%
CAAGCTTCTCTCTAGCCAAA+CGG - chr2_3:1230146-1230165 None:intergenic 45.0%
AGTGGTCAGATTTCAAGCCA+AGG + chr2_3:1230382-1230401 Msa0269960:CDS 45.0%
AGCCAAGGTCAATCAAGTAG+AGG + chr2_3:1230397-1230416 Msa0269960:CDS 45.0%
GATGGCAAACTCCTACAAGA+TGG - chr2_3:1230433-1230452 None:intergenic 45.0%
TGAGATGGTAAGCAGTGAGA+TGG - chr2_3:1230451-1230470 None:intergenic 45.0%
ACGTCTTTATCTCGACCTCT+AGG - chr2_3:1230478-1230497 None:intergenic 45.0%
AGAGGTCGAGATAAAGACGT+AGG + chr2_3:1230478-1230497 Msa0269960:CDS 45.0%
GGCTCTTTGCAACACGAATA+TGG + chr2_3:1230634-1230653 Msa0269960:CDS 45.0%
TAAGGGTTCTTCAGCTGAAC+AGG + chr2_3:1230792-1230811 Msa0269960:CDS 45.0%
GCAAGACATAAAGCTAGTGC+CGG + chr2_3:1230826-1230845 Msa0269960:CDS 45.0%
!! TGATGGCGGATATAACTGAC+CGG - chr2_3:1230848-1230867 None:intergenic 45.0%
GAAAAATCGCTCGAGGAAGA+TGG - chr2_3:1230988-1231007 None:intergenic 45.0%
GATCCTATAATGCCTGGCAA+TGG + chr2_3:1231030-1231049 Msa0269960:CDS 45.0%
GAACCATTGCCAGGCATTAT+AGG - chr2_3:1231036-1231055 None:intergenic 45.0%
! TTAGCTCTCACAATAGCTGC+AGG - chr2_3:1231090-1231109 None:intergenic 45.0%
CAGAACATAGGCTTGAAGTC+TGG + chr2_3:1231114-1231133 Msa0269960:CDS 45.0%
ACCTTATGACAGCGCATTTC+CGG - chr2_3:1231261-1231280 None:intergenic 45.0%
GGTTTCAAATCAGCCTTGGA+TGG - chr2_3:1231291-1231310 None:intergenic 45.0%
TCAAGCAATTTCGGCTGCAA+AGG - chr2_3:1231312-1231331 None:intergenic 45.0%
AAGCCTGCTTGCAAAGAGAA+TGG + chr2_3:1231360-1231379 Msa0269960:CDS 45.0%
TCTTCTGTTTGCTCTGGCAA+TGG + chr2_3:1231480-1231499 Msa0269960:CDS 45.0%
ACGGAAAAGTAGAGACACTG+AGG + chr2_3:1231542-1231561 Msa0269960:CDS 45.0%
GGATGTTGAGGATGAATCAG+TGG + chr2_3:1231668-1231687 Msa0269960:intron 45.0%
AGTGGGAGTTAAAAAGGGAG+CGG + chr2_3:1231686-1231705 Msa0269960:CDS 45.0%
GATTATGCACTTCAGCAGCA+CGG - chr2_3:1231743-1231762 None:intergenic 45.0%
GCTCGAGGGAAAATATGTGT+GGG - chr2_3:1231819-1231838 None:intergenic 45.0%
AGCTCGAGGGAAAATATGTG+TGG - chr2_3:1231820-1231839 None:intergenic 45.0%
GGTGGATAAAGCTTCTATGC+TGG + chr2_3:1232348-1232367 Msa0269960:intron 45.0%
CCAGCAGGTAACATCATTTG+AGG - chr2_3:1232536-1232555 None:intergenic 45.0%
CCTCAAATGATGTTACCTGC+TGG + chr2_3:1232533-1232552 Msa0269960:CDS 45.0%
! ATGGCCGCATTTTCACAGAT+GGG + chr2_3:1232581-1232600 Msa0269960:CDS 45.0%
! GCATTTTCACAGATGGGCAT+TGG + chr2_3:1232587-1232606 Msa0269960:CDS 45.0%
!! ATGGGCATTGGCATGCATAT+GGG + chr2_3:1232599-1232618 Msa0269960:CDS 45.0%
ATTGGCATGCATATGGGGTT+AGG + chr2_3:1232605-1232624 Msa0269960:CDS 45.0%
CATGCATATGGGGTTAGGTA+TGG + chr2_3:1232610-1232629 Msa0269960:CDS 45.0%
! ATGGGGTTAGGTATGGGTTA+TGG + chr2_3:1232617-1232636 Msa0269960:CDS 45.0%
ATGGGAATGCCTGACATGAA+CGG + chr2_3:1232641-1232660 Msa0269960:CDS 45.0%
ATGGCCAGATCGAATACTCA+AGG + chr2_3:1232758-1232777 Msa0269960:CDS 45.0%
TGGCCAGATCGAATACTCAA+GGG + chr2_3:1232759-1232778 Msa0269960:CDS 45.0%
TACTCAAGGGTTTGGACTTC+CGG + chr2_3:1232772-1232791 Msa0269960:CDS 45.0%
ATTTCCATGCCAATGACGCA+TGG + chr2_3:1232803-1232822 Msa0269960:CDS 45.0%
CCTCCTGAAAAAGGAAATGC+CGG - chr2_3:1232830-1232849 None:intergenic 45.0%
!!! CGGCATTTCCTTTTTCAGGA+GGG + chr2_3:1232828-1232847 Msa0269960:CDS 45.0%
ATAAGAGGCCCTCCTGAAAA+AGG - chr2_3:1232839-1232858 None:intergenic 45.0%
TCTTATGAACTCATCCGCTC+CGG + chr2_3:1232853-1232872 Msa0269960:CDS 45.0%
AAAAGATCGAAGGCCAGATG+TGG + chr2_3:1232940-1232959 Msa0269960:CDS 45.0%
GGGATAAACAGACCTGGTTA+GGG - chr2_3:1233015-1233034 None:intergenic 45.0%
AGGGATAAACAGACCTGGTT+AGG - chr2_3:1233016-1233035 None:intergenic 45.0%
TGGTTAGGGATAAACAGACC+TGG - chr2_3:1233021-1233040 None:intergenic 45.0%
AGGTCTGTTTATCCCTAACC+AGG + chr2_3:1233020-1233039 Msa0269960:intron 45.0%
TGATCACAGAGACCTGGTTA+GGG - chr2_3:1233035-1233054 None:intergenic 45.0%
TTGATCACAGAGACCTGGTT+AGG - chr2_3:1233036-1233055 None:intergenic 45.0%
GTGTGTGTGAACTAACCTGT+TGG + chr2_3:1233143-1233162 Msa0269960:intron 45.0%
!! ATTGTTTGAGTTGTACCGGC+AGG + chr2_3:1233368-1233387 Msa0269960:intron 45.0%
TCGTGGCTAGTAGAAGAATC+AGG + chr2_3:1233414-1233433 Msa0269960:three_prime_UTR 45.0%
TTCGGAGACTAGAATTCCCA+TGG - chr2_3:1233544-1233563 None:intergenic 45.0%
AGTGACACACGCACACAACT+GGG - chr2_3:1229308-1229327 None:intergenic 50.0%
ACCCAAATGGACGAAGAAGG+CGG - chr2_3:1229365-1229384 None:intergenic 50.0%
CTGATTCTCGGCTGAGATCA+AGG - chr2_3:1229589-1229608 None:intergenic 50.0%
!! TTTGAGCTGGTTTGGGAGAG+TGG + chr2_3:1230364-1230383 Msa0269960:CDS 50.0%
!! CGACCTCTAGGACTATGAGA+TGG - chr2_3:1230466-1230485 None:intergenic 50.0%
GGTCGAGATAAAGACGTAGG+AGG + chr2_3:1230481-1230500 Msa0269960:CDS 50.0%
CGAGATAAAGACGTAGGAGG+AGG + chr2_3:1230484-1230503 Msa0269960:CDS 50.0%
GTAACCAGGACGTGCCTTAT+GGG + chr2_3:1230947-1230966 Msa0269960:CDS 50.0%
TAACCAGGACGTGCCTTATG+GGG + chr2_3:1230948-1230967 Msa0269960:CDS 50.0%
AGCTGCAGGCCTTGCAAAAT+GGG - chr2_3:1231076-1231095 None:intergenic 50.0%
TAGCTGCAGGCCTTGCAAAA+TGG - chr2_3:1231077-1231096 None:intergenic 50.0%
TCCAAGCGGTGAGTGTTCAA+AGG + chr2_3:1231233-1231252 Msa0269960:CDS 50.0%
TCCTTTGAACACTCACCGCT+TGG - chr2_3:1231237-1231256 None:intergenic 50.0%
CGGTGAGTGTTCAAAGGAAC+CGG + chr2_3:1231239-1231258 Msa0269960:CDS 50.0%
ACCGGAAATGCGCTGTCATA+AGG + chr2_3:1231257-1231276 Msa0269960:CDS 50.0%
GGAAATGCGCTGTCATAAGG+TGG + chr2_3:1231260-1231279 Msa0269960:CDS 50.0%
TAAGGTGGTAGAGCCATCCA+AGG + chr2_3:1231275-1231294 Msa0269960:CDS 50.0%
! CTTGGTGACAATGGCGCTAA+AGG + chr2_3:1231414-1231433 Msa0269960:CDS 50.0%
GGACACACAGCTGCTGAAAA+AGG + chr2_3:1231435-1231454 Msa0269960:CDS 50.0%
CACAGCTGCTGAAAAAGGCA+TGG + chr2_3:1231440-1231459 Msa0269960:CDS 50.0%
! AGCTGCTGAAAAAGGCATGG+AGG + chr2_3:1231443-1231462 Msa0269960:CDS 50.0%
! TGCTGAAAAAGGCATGGAGG+TGG + chr2_3:1231446-1231465 Msa0269960:CDS 50.0%
GCCTCTTCTTCTGTTTGCTC+TGG + chr2_3:1231474-1231493 Msa0269960:CDS 50.0%
GCCAGAGCAAACAGAAGAAG+AGG - chr2_3:1231478-1231497 None:intergenic 50.0%
! TTCAGCAGCACGGCTTCTTT+TGG - chr2_3:1231733-1231752 None:intergenic 50.0%
GTATACAGAGGCGAAGAGAC+AGG + chr2_3:1231877-1231896 Msa0269960:intron 50.0%
!! CTGACTTCATACGGACTAGG+TGG + chr2_3:1232330-1232349 Msa0269960:intron 50.0%
CAGATGATGTCAATGGGAGC+TGG + chr2_3:1232500-1232519 Msa0269960:intron 50.0%
TGTGAAAATGCGGCCATGTG+TGG - chr2_3:1232578-1232597 None:intergenic 50.0%
! CATGGCCGCATTTTCACAGA+TGG + chr2_3:1232580-1232599 Msa0269960:CDS 50.0%
!! GATGGGCATTGGCATGCATA+TGG + chr2_3:1232598-1232617 Msa0269960:CDS 50.0%
!! TGGGCATTGGCATGCATATG+GGG + chr2_3:1232600-1232619 Msa0269960:CDS 50.0%
ACCCTCTGCTATGCATGGAA+TGG + chr2_3:1232739-1232758 Msa0269960:CDS 50.0%
GCCATTCCATGCATAGCAGA+GGG - chr2_3:1232743-1232762 None:intergenic 50.0%
ACTCAAGGGTTTGGACTTCC+GGG + chr2_3:1232773-1232792 Msa0269960:CDS 50.0%
! GGTCCGGCATTTCCTTTTTC+AGG + chr2_3:1232824-1232843 Msa0269960:CDS 50.0%
!!! CCGGCATTTCCTTTTTCAGG+AGG + chr2_3:1232827-1232846 Msa0269960:CDS 50.0%
GGAGCGGATGAGTTCATAAG+AGG - chr2_3:1232854-1232873 None:intergenic 50.0%
CTTATGAACTCATCCGCTCC+GGG + chr2_3:1232854-1232873 Msa0269960:CDS 50.0%
CCTGTGGATCCATACACAGA+CGG - chr2_3:1232881-1232900 None:intergenic 50.0%
CACAGCTTCAACATGTCCTG+TGG - chr2_3:1232897-1232916 None:intergenic 50.0%
CGTGTGGCTCAAAAGATCGA+AGG + chr2_3:1232930-1232949 Msa0269960:CDS 50.0%
TACAAGCCAGATCCCTAACC+AGG + chr2_3:1233000-1233019 Msa0269960:CDS 50.0%
AACAGACCTGGTTAGGGATC+TGG - chr2_3:1233009-1233028 None:intergenic 50.0%
TAATGGTGGCCATGCTTCAG+TGG + chr2_3:1233190-1233209 Msa0269960:CDS 50.0%
TGTCATCAGCCACTGAAGCA+TGG - chr2_3:1233202-1233221 None:intergenic 50.0%
GACAGTGAAGCTGCTAATCC+AGG + chr2_3:1233218-1233237 Msa0269960:CDS 50.0%
CAGTGACACACGCACACAAC+TGG - chr2_3:1229309-1229328 None:intergenic 55.0%
! GTGTGCGTGTGTCACTGCAT+TGG + chr2_3:1229312-1229331 Msa0269960:five_prime_UTR 55.0%
GCCGCCTTCTTCGTCCATTT+GGG + chr2_3:1229361-1229380 Msa0269960:five_prime_UTR 55.0%
GACTAACGGCGCAAGTGTAG+CGG + chr2_3:1230173-1230192 Msa0269960:CDS 55.0%
GGTAACCAGGACGTGCCTTA+TGG + chr2_3:1230946-1230965 Msa0269960:CDS 55.0%
TATCCCCATAAGGCACGTCC+TGG - chr2_3:1230954-1230973 None:intergenic 55.0%
TCTGGCAATGGTGCAGACAG+AGG + chr2_3:1231492-1231511 Msa0269960:CDS 55.0%
CAATGGTGCAGACAGAGGCT+CGG + chr2_3:1231497-1231516 Msa0269960:CDS 55.0%
GGAGTTAAAAAGGGAGCGGC+TGG + chr2_3:1231690-1231709 Msa0269960:CDS 55.0%
TGCATGTGCTGCATTCCAGC+AGG - chr2_3:1232551-1232570 None:intergenic 55.0%
GCACATGCATGCACCACACA+TGG + chr2_3:1232562-1232581 Msa0269960:CDS 55.0%
GGAATGCCTGACATGAACGG+CGG + chr2_3:1232644-1232663 Msa0269960:CDS 55.0%
GAATGCCTGACATGAACGGC+GGG + chr2_3:1232645-1232664 Msa0269960:CDS 55.0%
GGCCATTCCATGCATAGCAG+AGG - chr2_3:1232744-1232763 None:intergenic 55.0%
GGCATGGAAATTCCCTGTCC+CGG - chr2_3:1232794-1232813 None:intergenic 55.0%
CATGCCAATGACGCATGGTC+CGG + chr2_3:1232808-1232827 Msa0269960:CDS 55.0%
AATGCCGGACCATGCGTCAT+TGG - chr2_3:1232815-1232834 None:intergenic 55.0%
GATCCATACACAGACGGACC+CGG - chr2_3:1232875-1232894 None:intergenic 55.0%
CCGTCTGTGTATGGATCCAC+AGG + chr2_3:1232878-1232897 Msa0269960:CDS 55.0%
TTTGAGCCACACGCTGAAGC+CGG - chr2_3:1232923-1232942 None:intergenic 55.0%
CGCCGCCTTCTTCGTCCATT+TGG + chr2_3:1229360-1229379 Msa0269960:five_prime_UTR 60.0%
!! TCGCGAGATGGCACCGACAT+TGG - chr2_3:1230574-1230593 None:intergenic 60.0%
AAAAAGGGAGCGGCTGGACG+AGG + chr2_3:1231696-1231715 Msa0269960:CDS 60.0%
ATGCCCGTTGCGCATATGCC+TGG + chr2_3:1232716-1232735 Msa0269960:CDS 60.0%
GGTCCAGGCATATGCGCAAC+GGG - chr2_3:1232722-1232741 None:intergenic 60.0%
GGGTCCAGGCATATGCGCAA+CGG - chr2_3:1232723-1232742 None:intergenic 60.0%
CCATGCATAGCAGAGGGTCC+AGG - chr2_3:1232737-1232756 None:intergenic 60.0%
CCTGGACCCTCTGCTATGCA+TGG + chr2_3:1232734-1232753 Msa0269960:CDS 60.0%
AGGGTTTGGACTTCCGGGAC+AGG + chr2_3:1232778-1232797 Msa0269960:CDS 60.0%
GGGTTTGGACTTCCGGGACA+GGG + chr2_3:1232779-1232798 Msa0269960:CDS 60.0%
CGGACCATGCGTCATTGGCA+TGG - chr2_3:1232810-1232829 None:intergenic 60.0%
ATACACAGACGGACCCGGAG+CGG - chr2_3:1232870-1232889 None:intergenic 60.0%
GTGAATCCGGCTTCAGCGTG+TGG + chr2_3:1232914-1232933 Msa0269960:CDS 60.0%
GCTCCGGGTCCGTCTGTGTA+TGG + chr2_3:1232869-1232888 Msa0269960:CDS 65.0%
GCGGCTGGACGAGGAGTTGC+AGG + chr2_3:1231705-1231724 Msa0269960:CDS 70.0%
GACGGCCCGCCGTTCATGTC+AGG - chr2_3:1232653-1232672 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 1229233 1233733 1229233 ID=Msa0269960;Name=Msa0269960
chr2_3 mRNA 1229233 1233733 1229233 ID=Msa0269960-mRNA-1;Parent=Msa0269960;Name=Msa0269960-mRNA-1;_AED=0.11;_eAED=0.11;_QI=672|1|1|1|0.75|0.55|9|347|719
chr2_3 exon 1229233 1229719 1229233 ID=Msa0269960-mRNA-1:exon:513;Parent=Msa0269960-mRNA-1
chr2_3 exon 1229938 1230208 1229938 ID=Msa0269960-mRNA-1:exon:514;Parent=Msa0269960-mRNA-1
chr2_3 exon 1230348 1231584 1230348 ID=Msa0269960-mRNA-1:exon:515;Parent=Msa0269960-mRNA-1
chr2_3 exon 1231669 1231773 1231669 ID=Msa0269960-mRNA-1:exon:516;Parent=Msa0269960-mRNA-1
chr2_3 exon 1231885 1231950 1231885 ID=Msa0269960-mRNA-1:exon:517;Parent=Msa0269960-mRNA-1
chr2_3 exon 1232349 1232414 1232349 ID=Msa0269960-mRNA-1:exon:518;Parent=Msa0269960-mRNA-1
chr2_3 exon 1232503 1233021 1232503 ID=Msa0269960-mRNA-1:exon:519;Parent=Msa0269960-mRNA-1
chr2_3 exon 1233176 1233259 1233176 ID=Msa0269960-mRNA-1:exon:520;Parent=Msa0269960-mRNA-1
chr2_3 exon 1233390 1233733 1233390 ID=Msa0269960-mRNA-1:exon:521;Parent=Msa0269960-mRNA-1
chr2_3 five_prime_UTR 1229233 1229719 1229233 ID=Msa0269960-mRNA-1:five_prime_utr;Parent=Msa0269960-mRNA-1
chr2_3 five_prime_UTR 1229938 1230122 1229938 ID=Msa0269960-mRNA-1:five_prime_utr;Parent=Msa0269960-mRNA-1
chr2_3 CDS 1230123 1230208 1230123 ID=Msa0269960-mRNA-1:cds;Parent=Msa0269960-mRNA-1
chr2_3 CDS 1230348 1231584 1230348 ID=Msa0269960-mRNA-1:cds;Parent=Msa0269960-mRNA-1
chr2_3 CDS 1231669 1231773 1231669 ID=Msa0269960-mRNA-1:cds;Parent=Msa0269960-mRNA-1
chr2_3 CDS 1231885 1231950 1231885 ID=Msa0269960-mRNA-1:cds;Parent=Msa0269960-mRNA-1
chr2_3 CDS 1232349 1232414 1232349 ID=Msa0269960-mRNA-1:cds;Parent=Msa0269960-mRNA-1
chr2_3 CDS 1232503 1233021 1232503 ID=Msa0269960-mRNA-1:cds;Parent=Msa0269960-mRNA-1
chr2_3 CDS 1233176 1233256 1233176 ID=Msa0269960-mRNA-1:cds;Parent=Msa0269960-mRNA-1
chr2_3 three_prime_UTR 1233257 1233259 1233257 ID=Msa0269960-mRNA-1:three_prime_utr;Parent=Msa0269960-mRNA-1
chr2_3 three_prime_UTR 1233390 1233733 1233390 ID=Msa0269960-mRNA-1:three_prime_utr;Parent=Msa0269960-mRNA-1
Gene Sequence

>Msa0269960

ATGCCTCTTTATGAGTTATACCGTTTGGCTAGAGAGAAGCTTGATAATGAGACTAACGGCGCAAGTGTAGCGGATCAACCTTCGTCGCCTGAGAATGATTTTTTTGAGCTGGTTTGGGAGAGTGGTCAGATTTCAAGCCAAGGTCAATCAAGTAGAGGTAGAAAGAGTCCATCTTGTAGGAGTTTGCCATCTCACTGCTTACCATCTCATAGTCCTAGAGGTCGAGATAAAGACGTAGGAGGAGGATTTAGTAATAACAATCCAAAGATAGGAAAGTTTGGTGATTTAGACTCTGGATTGAATGAGATTCCAATGTCGGTGCCATCTCGCGAAGTAGATGAAATGATGCCTTGGTTGGATTATTCAATGGATGGCTCTTTGCAACACGAATATGGTTCTGATTTCTTTCATGAACTCACGGAGAACGACCTTCCTGCCTCGAATAGTTTTACTCTATTGGATAAAAGAAGTAATGGGAATCAGATATTTAGGGACTCTCATAAAAATTCTGCAGAACCGATGAATGTTTCTAAGGGTTCTTCAGCTGAACAGGTTGTTGAGACTGCAAGACATAAAGCTAGTGCCGGTCAGTTATATCCGCCATCATCGAATCAATGTCAAACAACATCTGTAACTGTTAGATCTAGGGCATCAGATATAACTGAAAATAATAATGTTAGCAGTGGTAACCAGGACGTGCCTTATGGGGATATTACTCGCATTCCATCTTCCTCGAGCGATTTTTCTAGCTTAAAAGCGCAGAAGCAAGATCCTATAATGCCTGGCAATGGTTCCAATGTAATGAATTTTTCCCATTTTGCAAGGCCTGCAGCTATTGTGAGAGCTAATCTTCAGAACATAGGCTTGAAGTCTGGTTTGAATTCAGCTTCAGCAAGATCAGATGTTATAGGAGTTAAGAATAAAGGCGCTGCTTCGACTAGCAGCAATCCTCCTGATTCAGCTCTTGTTAATCCAAGCGGTGAGTGTTCAAAGGAACCGGAAATGCGCTGTCATAAGGTGGTAGAGCCATCCAAGGCTGATTTGAAACCTTTGCAGCCGAAATTGCTTGAACCAAATGCTGTAGCTACTAAACAATCGAAGCCTGCTTGCAAAGAGAATGGAATTAAGAATGATCAACCTTCCATTCAAGTTCTTGGTGACAATGGCGCTAAAGGACACACAGCTGCTGAAAAAGGCATGGAGGTGGCAGTAGCCTCTTCTTCTGTTTGCTCTGGCAATGGTGCAGACAGAGGCTCGGATGATCCAAATCGAGATTTGAAACGGAAAAGTAGAGACACTGAGGACTCTGAATGCCATAGTGAAGATGTTGAGGATGAATCAGTGGGAGTTAAAAAGGGAGCGGCTGGACGAGGAGTTGCAGGTTCCAAAAGAAGCCGTGCTGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATAAATGAGAAGATGCGTGCATTGCAAGAACTCATACCTAATTGCAATAAGGTGGATAAAGCTTCTATGCTGGATGAGGCAATTGAGTATCTAAAAACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCTGGTTTATATATGCCTCAAATGATGTTACCTGCTGGAATGCAGCACATGCATGCACCACACATGGCCGCATTTTCACAGATGGGCATTGGCATGCATATGGGGTTAGGTATGGGTTATGGAATGGGAATGCCTGACATGAACGGCGGGCCGTCTAGATTTCCAATGATTCAAGTACCTCAGATGCAAGGAAATCATATGCCCGTTGCGCATATGCCTGGACCCTCTGCTATGCATGGAATGGCCAGATCGAATACTCAAGGGTTTGGACTTCCGGGACAGGGAATTTCCATGCCAATGACGCATGGTCCGGCATTTCCTTTTTCAGGAGGGCCTCTTATGAACTCATCCGCTCCGGGTCCGTCTGTGTATGGATCCACAGGACATGTTGAAGCTGTGAATCCGGCTTCAGCGTGTGGCTCAAAAGATCGAAGGCCAGATGTGGACTCACAAATTAAGCAAAACACTGCTGGTCGTGACTCTACAAGCCAGATCCCTAACCAGTCAACTTTGGTGCATAATGGTGGCCATGCTTCAGTGGCTGATGACAGTGAAGCTGCTAATCCAGGCAATACAAATTTGTGA
Protein sequence

>Msa0269960

MPLYELYRLAREKLDNETNGASVADQPSSPENDFFELVWESGQISSQGQSSRGRKSPSCRSLPSHCLPSHSPRGRDKDVGGGFSNNNPKIGKFGDLDSGLNEIPMSVPSREVDEMMPWLDYSMDGSLQHEYGSDFFHELTENDLPASNSFTLLDKRSNGNQIFRDSHKNSAEPMNVSKGSSAEQVVETARHKASAGQLYPPSSNQCQTTSVTVRSRASDITENNNVSSGNQDVPYGDITRIPSSSSDFSSLKAQKQDPIMPGNGSNVMNFSHFARPAAIVRANLQNIGLKSGLNSASARSDVIGVKNKGAASTSSNPPDSALVNPSGECSKEPEMRCHKVVEPSKADLKPLQPKLLEPNAVATKQSKPACKENGIKNDQPSIQVLGDNGAKGHTAAEKGMEVAVASSSVCSGNGADRGSDDPNRDLKRKSRDTEDSECHSEDVEDESVGVKKGAAGRGVAGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMPQMMLPAGMQHMHAPHMAAFSQMGIGMHMGLGMGYGMGMPDMNGGPSRFPMIQVPQMQGNHMPVAHMPGPSAMHGMARSNTQGFGLPGQGISMPMTHGPAFPFSGGPLMNSSAPGPSVYGSTGHVEAVNPASACGSKDRRPDVDSQIKQNTAGRDSTSQIPNQSTLVHNGGHASVADDSEAANPGNTNL*