AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0081010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081010 MtrunA17_Chr1g0193321 96.810 721 21 1 1 719 1 721 0.0 1437
Msa0081010 MtrunA17_Chr7g0271251 48.714 739 285 17 1 708 2 677 0.0 597
Msa0081010 MtrunA17_Chr1g0182791 61.333 150 54 2 395 544 254 399 1.57e-43 165
Msa0081010 MtrunA17_Chr7g0262691 55.000 160 53 5 396 542 185 338 6.61e-37 144
Msa0081010 MtrunA17_Chr3g0095391 61.654 133 39 5 425 557 276 396 1.22e-36 144
Msa0081010 MtrunA17_Chr7g0270871 50.314 159 71 3 407 561 152 306 1.21e-33 133
Msa0081010 MtrunA17_Chr5g0402031 50.336 149 60 2 402 549 59 194 7.55e-28 115
Msa0081010 MtrunA17_Chr1g0153241 65.882 85 29 0 454 538 79 163 1.79e-27 112
Msa0081010 MtrunA17_Chr7g0231461 55.435 92 40 1 432 522 268 359 6.51e-23 102
Msa0081010 MtrunA17_Chr4g0074161 55.405 74 29 1 462 531 208 281 9.76e-19 89.4
Msa0081010 MtrunA17_Chr1g0190731 52.857 70 29 1 462 527 195 264 1.39e-16 82.0
Msa0081010 MtrunA17_Chr1g0152131 47.945 73 37 1 462 533 262 334 1.63e-15 79.7
Msa0081010 MtrunA17_Chr5g0393721 35.294 119 61 3 444 561 207 310 2.27e-15 78.2
Msa0081010 MtrunA17_Chr8g0363921 50.000 64 31 1 462 524 153 216 1.42e-14 74.7
Msa0081010 MtrunA17_Chr3g0144641 45.205 73 39 1 462 533 193 265 2.31e-14 75.9
Msa0081010 MtrunA17_Chr8g0365941 42.105 95 47 3 462 548 307 401 3.88e-14 75.5
Msa0081010 MtrunA17_Chr5g0421111 46.575 73 38 1 462 533 367 439 4.28e-14 75.9
Msa0081010 MtrunA17_Chr1g0207311 36.538 104 46 3 463 561 194 282 4.94e-14 73.2
Msa0081010 MtrunA17_Chr7g0234761 51.562 64 30 1 462 524 319 382 5.07e-14 75.5
Msa0081010 MtrunA17_Chr5g0415291 38.583 127 63 5 409 524 55 177 5.10e-14 72.4
Msa0081010 MtrunA17_Chr4g0035101 45.205 73 39 1 462 533 145 217 5.75e-14 73.9
Msa0081010 MtrunA17_Chr8g0339091 51.562 64 30 1 462 524 293 356 7.77e-14 74.7
Msa0081010 MtrunA17_Chr3g0131771 50.000 64 31 1 462 524 149 212 2.90e-13 71.6
Msa0081010 MtrunA17_Chr3g0134741 36.275 102 50 3 458 559 227 313 4.40e-13 70.9
Msa0081010 MtrunA17_Chr8g0385911 40.000 80 47 1 449 527 134 213 8.34e-13 70.1
Msa0081010 MtrunA17_Chr1g0207301 36.047 86 40 2 476 561 304 374 2.19e-12 69.3
Msa0081010 MtrunA17_Chr7g0258161 43.056 72 40 1 463 533 176 247 2.72e-12 68.9
Msa0081010 MtrunA17_Chr1g0152651 45.455 66 36 0 458 523 272 337 3.13e-12 68.9
Msa0081010 MtrunA17_Chr1g0174161 41.429 70 40 1 463 531 163 232 1.62e-11 66.2
Msa0081010 MtrunA17_Chr1g0184841 50.000 74 33 1 462 531 122 195 6.81e-11 63.9
Msa0081010 MtrunA17_Chr6g0484271 45.312 64 34 1 462 524 157 220 7.07e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081010 AT1G09530.3 35.703 619 221 24 1 595 1 466 1.58e-71 242
Msa0081010 AT1G09530.2 35.703 619 221 24 1 595 1 466 1.58e-71 242
Msa0081010 AT1G09530.5 35.703 619 221 24 1 595 1 466 1.58e-71 242
Msa0081010 AT1G09530.1 35.703 619 221 24 1 595 1 466 1.58e-71 242
Msa0081010 AT1G09530.4 35.703 619 221 24 1 595 1 466 1.58e-71 242
Msa0081010 AT1G09530.6 35.703 619 221 24 1 595 1 466 1.58e-71 242
Msa0081010 AT2G46970.2 46.193 197 78 7 395 576 127 310 1.40e-34 136
Msa0081010 AT2G20180.7 47.458 177 72 5 399 572 153 311 1.48e-34 137
Msa0081010 AT2G20180.1 47.458 177 72 5 399 572 153 311 1.48e-34 137
Msa0081010 AT2G20180.5 47.458 177 72 5 399 572 153 311 1.48e-34 137
Msa0081010 AT2G46970.1 46.193 197 78 7 395 576 158 341 2.00e-34 136
Msa0081010 AT2G46970.3 46.193 197 78 7 395 576 136 319 2.87e-34 135
Msa0081010 AT2G20180.4 47.458 177 72 5 399 572 224 382 6.78e-34 136
Msa0081010 AT2G20180.6 47.458 177 72 5 399 572 224 382 6.78e-34 136
Msa0081010 AT2G20180.2 47.458 177 72 5 399 572 224 382 6.78e-34 136
Msa0081010 AT2G20180.3 47.458 177 72 5 399 572 224 382 6.78e-34 136
Msa0081010 AT2G20180.8 52.381 126 47 3 399 521 224 339 2.25e-29 120
Msa0081010 AT4G28800.1 43.827 162 67 5 392 548 193 335 1.87e-27 116
Msa0081010 AT4G28790.1 43.709 151 65 4 421 564 244 381 1.04e-26 114
Msa0081010 AT4G36930.1 58.772 114 41 2 432 541 161 272 1.41e-26 112
Msa0081010 AT4G00050.2 59.140 93 34 2 432 523 79 168 2.87e-26 110
Msa0081010 AT4G00050.3 59.140 93 34 2 432 523 181 270 1.24e-25 110
Msa0081010 AT4G00050.1 59.140 93 34 2 432 523 181 270 1.44e-25 110
Msa0081010 AT5G67110.1 54.639 97 44 0 440 536 67 163 1.86e-24 102
Msa0081010 AT3G59060.1 47.552 143 60 3 425 555 212 351 3.14e-23 103
Msa0081010 AT3G59060.3 47.552 143 60 3 425 555 212 351 3.57e-23 103
Msa0081010 AT3G59060.2 47.552 143 60 3 425 555 212 351 3.57e-23 103
Msa0081010 AT3G59060.4 47.552 143 60 3 425 555 212 351 3.57e-23 103
Msa0081010 AT4G28800.2 41.358 162 65 6 392 548 205 341 5.34e-23 103
Msa0081010 AT3G62090.1 46.341 123 48 2 460 573 165 278 5.57e-23 101
Msa0081010 AT3G62090.2 46.341 123 48 2 460 573 182 295 1.08e-22 100
Msa0081010 AT4G28815.2 52.222 90 40 2 456 542 64 153 3.26e-22 96.7
Msa0081010 AT4G28815.1 48.958 96 46 2 450 542 134 229 1.90e-21 96.3
Msa0081010 AT2G43010.2 66.667 81 24 1 445 522 233 313 1.12e-20 95.9
Msa0081010 AT2G43010.1 66.667 81 24 1 445 522 233 313 1.20e-20 95.9
Msa0081010 AT2G43010.4 66.667 81 24 1 445 522 233 313 1.31e-20 95.5
Msa0081010 AT2G43010.3 66.667 81 24 1 445 522 240 320 1.39e-20 95.9
Msa0081010 AT2G43010.5 66.667 81 24 1 445 522 275 355 2.18e-20 95.5
Msa0081010 AT4G28790.2 48.000 100 40 2 421 520 244 331 8.27e-20 92.0
Msa0081010 AT2G24260.2 60.317 63 25 0 462 524 37 99 1.74e-19 89.0
Msa0081010 AT5G58010.1 53.947 76 31 1 462 533 101 176 3.56e-19 89.4
Msa0081010 AT2G24260.1 60.317 63 25 0 462 524 140 202 7.20e-19 89.4
Msa0081010 AT4G30980.1 58.730 63 26 0 462 524 132 194 1.33e-18 87.8
Msa0081010 AT5G61270.2 48.246 114 48 3 423 536 45 147 2.99e-18 86.3
Msa0081010 AT5G61270.3 48.246 114 48 3 423 536 45 147 2.99e-18 86.3
Msa0081010 AT4G30980.2 58.730 63 26 0 462 524 180 242 3.32e-18 87.4
Msa0081010 AT5G61270.1 48.246 114 48 3 423 536 133 235 5.49e-18 87.0
Msa0081010 AT4G28811.1 41.916 167 72 5 392 545 292 446 9.51e-17 84.7
Msa0081010 AT1G68920.1 31.795 195 103 6 357 533 195 377 2.52e-15 79.7
Msa0081010 AT1G68920.4 31.795 195 103 6 357 533 195 377 2.52e-15 79.7
Msa0081010 AT1G68920.2 31.795 195 103 6 357 533 195 377 2.52e-15 79.7
Msa0081010 AT1G68920.3 49.315 73 36 1 462 533 304 376 2.82e-15 79.7
Msa0081010 AT5G50915.3 53.125 64 29 1 462 524 138 201 3.60e-15 76.6
Msa0081010 AT5G50915.4 53.125 64 29 1 462 524 138 201 3.60e-15 76.6
Msa0081010 AT1G10120.2 47.945 73 37 1 462 533 208 280 4.40e-15 78.2
Msa0081010 AT1G10120.1 47.945 73 37 1 462 533 208 280 4.40e-15 78.2
Msa0081010 AT5G50915.1 53.125 64 29 1 462 524 138 201 5.24e-15 76.6
Msa0081010 AT5G50915.2 53.125 64 29 1 462 524 138 201 5.24e-15 76.6
Msa0081010 AT1G02340.2 47.727 88 44 2 474 559 134 221 9.20e-15 75.9
Msa0081010 AT1G02340.1 47.727 88 44 2 474 559 141 228 1.01e-14 75.9
Msa0081010 AT2G18300.1 45.333 75 40 1 462 535 187 261 2.00e-14 75.9
Msa0081010 AT2G18300.2 45.333 75 40 1 462 535 187 261 2.15e-14 75.5
Msa0081010 AT3G23690.1 44.156 77 42 1 462 537 193 269 2.28e-14 75.9
Msa0081010 AT4G36540.2 45.205 73 39 1 462 533 143 215 2.76e-14 74.7
Msa0081010 AT4G36540.1 45.205 73 39 1 462 533 143 215 2.78e-14 74.7
Msa0081010 AT2G18300.3 44.156 77 42 1 462 537 187 263 2.80e-14 75.5
Msa0081010 AT5G62610.2 51.562 64 30 1 462 524 155 218 4.07e-14 73.9
Msa0081010 AT5G62610.1 51.562 64 30 1 462 524 155 218 4.07e-14 73.9
Msa0081010 AT1G59640.1 50.000 64 31 1 462 524 138 201 5.35e-14 73.2
Msa0081010 AT2G14760.1 38.462 104 49 3 458 561 235 323 5.63e-14 74.3
Msa0081010 AT3G07340.2 51.562 64 30 1 462 524 260 323 6.30e-14 75.1
Msa0081010 AT2G14760.3 37.931 116 51 4 452 561 236 336 6.93e-14 73.9
Msa0081010 AT3G07340.1 51.562 64 30 1 462 524 260 323 7.48e-14 75.1
Msa0081010 AT5G48560.2 51.562 64 30 1 462 524 303 366 1.00e-13 74.7
Msa0081010 AT5G48560.1 51.562 64 30 1 462 524 303 366 1.15e-13 74.7
Msa0081010 AT4G33880.1 40.000 100 45 3 458 557 264 348 1.26e-13 73.6
Msa0081010 AT4G34530.1 41.667 72 41 1 462 532 174 245 1.75e-13 72.8
Msa0081010 AT5G43175.1 41.250 80 39 2 451 530 130 201 2.74e-13 70.5
Msa0081010 AT1G26260.3 48.438 64 32 1 462 524 174 237 2.78e-13 72.4
Msa0081010 AT1G26260.5 48.438 64 32 1 462 524 203 266 2.83e-13 72.4
Msa0081010 AT2G42300.4 43.836 73 40 1 462 533 187 259 3.00e-13 71.2
Msa0081010 AT1G26260.4 48.438 64 32 1 462 524 225 288 3.46e-13 72.4
Msa0081010 AT1G26260.1 48.438 64 32 1 462 524 225 288 3.46e-13 72.4
Msa0081010 AT1G26260.6 48.438 64 32 1 462 524 225 288 3.46e-13 72.4
Msa0081010 AT1G26260.2 48.438 64 32 1 462 524 225 288 3.46e-13 72.4
Msa0081010 AT1G59640.2 50.000 64 31 1 462 524 138 201 3.62e-13 72.0
Msa0081010 AT2G42300.1 43.836 73 40 1 462 533 187 259 5.41e-13 71.2
Msa0081010 AT1G27740.1 36.066 122 58 5 440 561 152 253 5.45e-13 70.1
Msa0081010 AT3G57800.2 42.466 73 41 1 462 533 206 278 1.74e-12 70.1
Msa0081010 AT1G18400.2 46.875 64 33 1 462 524 147 210 2.25e-12 68.2
Msa0081010 AT1G18400.1 46.875 64 33 1 462 524 147 210 2.61e-12 68.2
Msa0081010 AT1G25330.1 45.312 64 34 1 462 524 106 169 4.03e-12 67.0
Msa0081010 AT1G73830.2 43.750 64 35 1 462 524 149 212 1.07e-11 66.2
Msa0081010 AT1G73830.1 43.750 64 35 1 462 524 149 212 1.21e-11 66.2

Find 234 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGAAAATTGCACAGATTT+TGG 0.143105 1_2:+59477112 Msa0081010:three_prime_UTR
AATGCAATATTTAAGAAGTT+TGG 0.188590 1_2:-59472936 None:intergenic
GTAATGGGAATCAGATATTT+AGG 0.194680 1_2:+59474277 Msa0081010:CDS
CGCCGCCTTCTTCGTCCATT+TGG 0.199275 1_2:+59472906 Msa0081010:five_prime_UTR
CTTTGTCTTCAAACTTCATT+TGG 0.201765 1_2:+59473513 Msa0081010:five_prime_UTR
GATCTTTCATAGTGATTCTT+TGG 0.204839 1_2:+59477232 Msa0081010:three_prime_UTR
CAACCTTCCATTCAAGTTCT+TGG 0.207186 1_2:+59474942 Msa0081010:CDS
TCACCAAACTTTCCTATCTT+TGG 0.207484 1_2:-59474069 None:intergenic
TGAATCAGTGGGAGTTAAAA+AGG 0.229978 1_2:+59475226 Msa0081010:CDS
CTAAACCATGGTTAATGTTT+TGG 0.237543 1_2:-59472796 None:intergenic
TACTCAAGGGTTTGGACTTC+CGG 0.238298 1_2:+59476319 Msa0081010:CDS
GGACACACAGCTGCTGAAAA+AGG 0.246020 1_2:+59474981 Msa0081010:CDS
TTCAGCAGCACGGCTTCTTT+TGG 0.263273 1_2:-59475276 None:intergenic
TAGCTGCAGGCCTTGCAAAA+TGG 0.265088 1_2:-59474620 None:intergenic
GAACCATTGCCAGGCATTAT+AGG 0.273673 1_2:-59474579 None:intergenic
AAAGATGAGAAACGACATTT+TGG 0.278685 1_2:-59477000 None:intergenic
GGCTCTTTGCAACACGAATA+TGG 0.299730 1_2:+59474180 Msa0081010:CDS
AAATATCCTCTTCAGTAATC+TGG 0.302622 1_2:-59477034 None:intergenic
ACCTTATGACAGCGCATTTC+CGG 0.308325 1_2:-59474804 None:intergenic
AAACTAACCTTATTGCAATT+AGG 0.311300 1_2:-59475482 None:intergenic
ATGCAATATTTAAGAAGTTT+GGG 0.315431 1_2:-59472935 None:intergenic
GCATTTGGTTCAAGCAATTT+CGG 0.321748 1_2:-59474864 None:intergenic
ATTATTAACTTACTTCACTA+TGG 0.325057 1_2:-59475121 None:intergenic
AGAACCGATGAATGTTTCTA+AGG 0.325663 1_2:+59474320 Msa0081010:CDS
TTCCGTTTCAAATCTCGATT+TGG 0.325821 1_2:-59475071 None:intergenic
CATCTGTAACTGTTAGATCT+AGG 0.327984 1_2:+59474433 Msa0081010:CDS
GGTAACCAGGACGTGCCTTA+TGG 0.332319 1_2:+59474492 Msa0081010:CDS
AGCTGCAGGCCTTGCAAAAT+GGG 0.334857 1_2:-59474619 None:intergenic
AGGGATAAACAGACCTGGTT+AGG 0.337445 1_2:-59476560 None:intergenic
GCCGCCTTCTTCGTCCATTT+GGG 0.347498 1_2:+59472907 Msa0081010:five_prime_UTR
ATAAGAGGCCCTCCTGAAAA+AGG 0.349955 1_2:-59476383 None:intergenic
ACTCAAGGGTTTGGACTTCC+GGG 0.350946 1_2:+59476320 Msa0081010:CDS
AATGCTAATACTAAGAGCTT+TGG 0.360151 1_2:+59473580 Msa0081010:five_prime_UTR
AATCCAAAGATAGGAAAGTT+TGG 0.360484 1_2:+59474066 Msa0081010:CDS
GATAACTTCTGAGTTGCATT+TGG 0.361157 1_2:+59472993 Msa0081010:five_prime_UTR
TAAGGGTTCTTCAGCTGAAC+AGG 0.362772 1_2:+59474338 Msa0081010:CDS
CACTATGAAAGATCTGAATA+AGG 0.369825 1_2:-59477223 None:intergenic
CAGTGACACACGCACACAAC+TGG 0.374364 1_2:-59472852 None:intergenic
GCCTCTTCTTCTGTTTGCTC+TGG 0.374903 1_2:+59475020 Msa0081010:CDS
AGAATCAGTGTCACTGTATT+CGG 0.376615 1_2:+59473147 Msa0081010:five_prime_UTR
AGTAATAACAATCCAAAGAT+AGG 0.377772 1_2:+59474057 Msa0081010:CDS
TCTTTATGAGTTATACCGTT+TGG 0.379797 1_2:+59473674 Msa0081010:CDS
AATCACAAATTTGTATTGCC+TGG 0.381522 1_2:-59476783 None:intergenic
ATGGGGTTAGGTATGGGTTA+TGG 0.384832 1_2:+59476164 Msa0081010:CDS
ATCTGAGGTACTTGAATCAT+TGG 0.390961 1_2:-59476227 None:intergenic
GTAACCAGGACGTGCCTTAT+GGG 0.391349 1_2:+59474493 Msa0081010:CDS
CATGCCAATGCCGCATGGTC+CGG 0.391369 1_2:+59476355 Msa0081010:CDS
CATGCATATGGGGTTAGGTA+TGG 0.391760 1_2:+59476157 Msa0081010:CDS
TTAATTTGTGAGTCCACATC+TGG 0.393466 1_2:-59476500 None:intergenic
ACTCATACCTAATTGCAATA+AGG 0.396247 1_2:+59475475 Msa0081010:CDS
GATGGGCATCGGCATGCATA+TGG 0.396774 1_2:+59476145 Msa0081010:CDS
TGTTTAGTAGCTACAGCATT+TGG 0.397325 1_2:-59474879 None:intergenic
GTTATAGGAGTTAAGAATAA+AGG 0.400952 1_2:+59474711 Msa0081010:CDS
GCGGCTGGACGAGGAGTTGC+AGG 0.404515 1_2:+59475251 Msa0081010:CDS
AGGCAATACAAATTTGTGAT+TGG 0.410430 1_2:+59476785 Msa0081010:exon
TCCTTTGAACACTCACCGCT+TGG 0.414948 1_2:-59474780 None:intergenic
CAGTCAACTTTGGTGCATAA+TGG 0.417435 1_2:+59476720 Msa0081010:intron
AGATCGAATACTCAAGGGTT+TGG 0.418683 1_2:+59476311 Msa0081010:CDS
TCAGCAAGATCAGATGTTAT+AGG 0.425064 1_2:+59474696 Msa0081010:CDS
AACAGACCTGGTTAGGGATC+TGG 0.426475 1_2:-59476553 None:intergenic
GAATGATATTTACTTGAACT+TGG 0.428430 1_2:-59475952 None:intergenic
CGGTGAGTGTTCAAAGGAAC+CGG 0.431291 1_2:+59474785 Msa0081010:CDS
TACCTCTACTTGATTGACCT+TGG 0.431493 1_2:-59473945 None:intergenic
GCTCCGGGTCCGTCTGTGTA+TGG 0.432008 1_2:+59476416 Msa0081010:CDS
TCTTCTGTTTGCTCTGGCAA+TGG 0.432421 1_2:+59475026 Msa0081010:CDS
TTTGAGCTGGTTTGGGAGAG+TGG 0.433011 1_2:+59473910 Msa0081010:CDS
GGTCCAGGCATATGCGCAAC+GGG 0.433702 1_2:-59476266 None:intergenic
CTTCATTTGGATTCCAAAGG+TGG 0.435654 1_2:+59473526 Msa0081010:five_prime_UTR
AGGGTTTGGACTTCCGGGAC+AGG 0.436904 1_2:+59476325 Msa0081010:CDS
AATGCCGGACCATGCGGCAT+TGG 0.437560 1_2:-59476359 None:intergenic
GACGGCCCGCCGTTCATGTC+AGG 0.437600 1_2:-59476197 None:intergenic
CAGAACATAGGCTTGAAGTC+TGG 0.440984 1_2:+59474660 Msa0081010:CDS
CTGATTCTCGGCTGAGATCA+AGG 0.445045 1_2:-59473132 None:intergenic
TCGCGAGATGGCACCGACAT+TGG 0.449982 1_2:-59474117 None:intergenic
ATTGCTTCCAACATATTCTT+CGG 0.452650 1_2:-59473560 None:intergenic
CTTGGTGACAATGGCGCTAA+AGG 0.455067 1_2:+59474960 Msa0081010:CDS
ATGCCCGTTGCGCATATGCC+TGG 0.457121 1_2:+59476263 Msa0081010:CDS
ACCGGAAATGCGCTGTCATA+AGG 0.458097 1_2:+59474803 Msa0081010:CDS
TCGTGGCTAGTAGAAGAATC+AGG 0.460029 1_2:+59476961 Msa0081010:three_prime_UTR
GGATTAACAAGAGCTGAATC+AGG 0.461722 1_2:-59474759 None:intergenic
TTAGGTATGGGTTATGGAAT+GGG 0.462375 1_2:+59476170 Msa0081010:CDS
AAGTTTGGTGATTTAGACTC+TGG 0.465005 1_2:+59474081 Msa0081010:CDS
AATACAGTGACACTGATTCT+CGG 0.465480 1_2:-59473144 None:intergenic
ATTACATTGGAACCATTGCC+AGG 0.465626 1_2:-59474588 None:intergenic
TGGATTTAAACAGTCAACTT+TGG 0.465882 1_2:+59476710 Msa0081010:intron
TATTGGATAAAAGAAGTAAT+GGG 0.466226 1_2:+59474262 Msa0081010:CDS
ATGGGCATCGGCATGCATAT+GGG 0.467830 1_2:+59476146 Msa0081010:CDS
GTAGAAAGAGTCCATCTTGT+AGG 0.469763 1_2:+59473965 Msa0081010:CDS
ACATGTTGAAGCTGTGAATC+CGG 0.471250 1_2:+59476448 Msa0081010:CDS
GCCTTGGTTGGATTATTCAA+TGG 0.473067 1_2:+59474155 Msa0081010:CDS
ATTCCATTCTCTTTGCAAGC+AGG 0.474924 1_2:-59474909 None:intergenic
TAATGGGAATCAGATATTTA+GGG 0.478431 1_2:+59474278 Msa0081010:CDS
TCTTATGAACTCATCCGCTC+CGG 0.478517 1_2:+59476400 Msa0081010:CDS
TGGTTGGATTATTCAATGGA+TGG 0.481215 1_2:+59474159 Msa0081010:CDS
CAAAGGTTTCAAATCAGCCT+TGG 0.482518 1_2:-59474838 None:intergenic
CCAGCAGGTAACATCATTTG+AGG 0.491436 1_2:-59476080 None:intergenic
GACAGTGAAGCTGCTAATCC+AGG 0.492549 1_2:+59476765 Msa0081010:CDS
AAACTTCATTTGGATTCCAA+AGG 0.498356 1_2:+59473523 Msa0081010:five_prime_UTR
ATGCATATGGGGTTAGGTAT+GGG 0.501740 1_2:+59476158 Msa0081010:CDS
ATTGTCACCAAGAACTTGAA+TGG 0.502299 1_2:-59474949 None:intergenic
ATCCAAATCGAGATTTGAAA+CGG 0.502394 1_2:+59475069 Msa0081010:CDS
TTTGAGCCACACGCTGAAGC+CGG 0.503540 1_2:-59476467 None:intergenic
CTATTGGATAAAAGAAGTAA+TGG 0.505191 1_2:+59474261 Msa0081010:CDS
ATCTCACTCATAGTTTATTG+TGG 0.506699 1_2:+59473471 Msa0081010:intron
CAAATTAAGCAAAACACTGC+TGG 0.508355 1_2:+59476515 Msa0081010:CDS
AGTTTATTGTGGCTTACGAC+GGG 0.508407 1_2:+59473482 Msa0081010:intron
AAGCCTGCTTGCAAAGAGAA+TGG 0.512967 1_2:+59474906 Msa0081010:CDS
GTTTGACATTGATTCGATGA+TGG 0.513871 1_2:-59474408 None:intergenic
ATCGGCATGCATATGGGGTT+AGG 0.513942 1_2:+59476152 Msa0081010:CDS
CAATAGAGTAAAACTATTCG+AGG 0.514401 1_2:-59474244 None:intergenic
CTTATGAACTCATCCGCTCC+GGG 0.516950 1_2:+59476401 Msa0081010:CDS
CCTCAAATGATGTTACCTGC+TGG 0.519335 1_2:+59476080 Msa0081010:CDS
ATCTGTAACTGTTAGATCTA+GGG 0.521505 1_2:+59474434 Msa0081010:CDS
GGTGGATAAAGCTTCTATGC+TGG 0.522318 1_2:+59475895 Msa0081010:intron
TCAAGCAATTTCGGCTGCAA+AGG 0.523909 1_2:-59474855 None:intergenic
TGATTTCTTTCATGAACTCA+CGG 0.530210 1_2:+59474206 Msa0081010:CDS
AAACGGTATAACTCATAAAG+AGG 0.530629 1_2:-59473672 None:intergenic
GGAGCGGATGAGTTCATAAG+AGG 0.531123 1_2:-59476398 None:intergenic
GGCATGGAAATTCCCTGTCC+CGG 0.531882 1_2:-59476338 None:intergenic
GGGTTTGGACTTCCGGGACA+GGG 0.531895 1_2:+59476326 Msa0081010:CDS
TCTTACGCAGATGATGTCAA+TGG 0.532008 1_2:+59476040 Msa0081010:intron
TCACCAAGAACTTGAATGGA+AGG 0.535249 1_2:-59474945 None:intergenic
GGGATAAACAGACCTGGTTA+GGG 0.536075 1_2:-59476559 None:intergenic
GTTAGGTATGGGTTATGGAA+TGG 0.536992 1_2:+59476169 Msa0081010:CDS
GCCAGAGCAAACAGAAGAAG+AGG 0.539271 1_2:-59475021 None:intergenic
AAGCAAGATCCTATAATGCC+TGG 0.540589 1_2:+59474570 Msa0081010:CDS
TGCATGTGCTGCATTCCAGC+AGG 0.541526 1_2:-59476095 None:intergenic
GTATACAGAGGCGAAGAGAC+AGG 0.541533 1_2:+59475423 Msa0081010:intron
TTAGCTCTCACAATAGCTGC+AGG 0.542020 1_2:-59474633 None:intergenic
AGAGTAAAACTATTCGAGGC+AGG 0.545061 1_2:-59474240 None:intergenic
GTGAATCCGGCTTCAGCGTG+TGG 0.545306 1_2:+59476461 Msa0081010:CDS
AGATGAAATGATGCCTTGGT+TGG 0.547275 1_2:+59474143 Msa0081010:CDS
ACTTTAATTGAAGGATGTTG+AGG 0.547453 1_2:+59475202 Msa0081010:intron
CCGTCTGTGTATGGATCCAC+AGG 0.548020 1_2:+59476425 Msa0081010:CDS
GGTTTCAAATCAGCCTTGGA+TGG 0.548035 1_2:-59474834 None:intergenic
ACGTCTTTATCTCGACCTCT+AGG 0.548572 1_2:-59474021 None:intergenic
TATCCCCATAAGGCACGTCC+TGG 0.548638 1_2:-59474497 None:intergenic
TAATGTTAGCAGTGGTAACC+AGG 0.548677 1_2:+59474479 Msa0081010:CDS
AAACCCTTGAGTATTCGATC+TGG 0.548724 1_2:-59476309 None:intergenic
AGTGCATAATCTATCTGAAA+GGG 0.548993 1_2:+59475298 Msa0081010:CDS
AAGGTTTCTATTCTAAACCA+TGG 0.549756 1_2:-59472808 None:intergenic
GATAACACCGAAGAATATGT+TGG 0.549773 1_2:+59473553 Msa0081010:five_prime_UTR
AAGTTTGGGAATGACCCAAA+TGG 0.550042 1_2:-59472921 None:intergenic
GCACATGCATGCACCACACA+TGG 0.551028 1_2:+59476109 Msa0081010:CDS
GACTAACGGCGCAAGTGTAG+CGG 0.551051 1_2:+59473719 Msa0081010:CDS
CGGACCATGCGGCATTGGCA+TGG 0.552943 1_2:-59476354 None:intergenic
CCTGGACCCTCTGCTATGCA+TGG 0.553478 1_2:+59476281 Msa0081010:CDS
GAATGCCTGACATGAACGGC+GGG 0.554517 1_2:+59476192 Msa0081010:CDS
CGAGATAAAGACGTAGGAGG+AGG 0.554717 1_2:+59474030 Msa0081010:CDS
ATTCAAGTTCTTGGTGACAA+TGG 0.555532 1_2:+59474951 Msa0081010:CDS
CTTACGCAGATGATGTCAAT+GGG 0.556698 1_2:+59476041 Msa0081010:intron
ATTTCATCTACTTCGCGAGA+TGG 0.557156 1_2:-59474129 None:intergenic
ATGCGAGTAATATCCCCATA+AGG 0.560313 1_2:-59474507 None:intergenic
TTCAAACCAGATTACTGAAG+AGG 0.561206 1_2:+59477028 Msa0081010:three_prime_UTR
CAAGCTTCTCTCTAGCCAAA+CGG 0.561344 1_2:-59473689 None:intergenic
GAACCGATGAATGTTTCTAA+GGG 0.563235 1_2:+59474321 Msa0081010:CDS
AGATTATTCACACAACAAGA+AGG 0.563365 1_2:-59473029 None:intergenic
AGAGCTAATCTTCAGAACAT+AGG 0.563549 1_2:+59474648 Msa0081010:CDS
TAATGGTGGCCATGCTTCAG+TGG 0.563671 1_2:+59476737 Msa0081010:CDS
TAAAGCTTCTATGCTGGATG+AGG 0.564004 1_2:+59475901 Msa0081010:CDS
TACAAGCCAGATCCCTAACC+AGG 0.569454 1_2:+59476547 Msa0081010:CDS
CAGATGATGTCAATGGGAGC+TGG 0.570696 1_2:+59476047 Msa0081010:intron
TTTACCTGTCAAAATAGCCA+TGG 0.570700 1_2:+59477071 Msa0081010:three_prime_UTR
GGGTCCAGGCATATGCGCAA+CGG 0.570830 1_2:-59476267 None:intergenic
ATATGATTTCCTTGCATCTG+AGG 0.571553 1_2:-59476242 None:intergenic
CCATGCATAGCAGAGGGTCC+AGG 0.572604 1_2:-59476281 None:intergenic
GTGTGCGTGTGTCACTGCAT+TGG 0.574052 1_2:+59472858 Msa0081010:five_prime_UTR
TTCGGAGACTAGAATTCCCA+TGG 0.575489 1_2:-59477088 None:intergenic
CTTAACCAAAACATTAACCA+TGG 0.575886 1_2:+59472791 Msa0081010:five_prime_UTR
GTCACTTACTTTACTTGACA+AGG 0.577238 1_2:+59473244 Msa0081010:five_prime_UTR
ATGGCCAGATCGAATACTCA+AGG 0.580647 1_2:+59476305 Msa0081010:CDS
TCCAAGCGGTGAGTGTTCAA+AGG 0.581477 1_2:+59474779 Msa0081010:CDS
TAGTTTATTGTGGCTTACGA+CGG 0.581545 1_2:+59473481 Msa0081010:intron
GAAAATAATAATGTTAGCAG+TGG 0.582796 1_2:+59474471 Msa0081010:CDS
ACCCTCTGCTATGCATGGAA+TGG 0.583329 1_2:+59476286 Msa0081010:CDS
ATGACCCAAATGGACGAAGA+AGG 0.585238 1_2:-59472911 None:intergenic
GCACTAATCAGCATATAAGT+CGG 0.586456 1_2:-59473185 None:intergenic
TGGGCATCGGCATGCATATG+GGG 0.587722 1_2:+59476147 Msa0081010:CDS
AAAAGATCGAAGGCCAGATG+TGG 0.594060 1_2:+59476487 Msa0081010:CDS
GATCCTATAATGCCTGGCAA+TGG 0.595775 1_2:+59474576 Msa0081010:CDS
AAGTGCATAATCTATCTGAA+AGG 0.598272 1_2:+59475297 Msa0081010:CDS
GCAAGACATAAAGCTAGTGC+CGG 0.602436 1_2:+59474372 Msa0081010:CDS
GATTATGCACTTCAGCAGCA+CGG 0.604449 1_2:-59475286 None:intergenic
CAATGGTGCAGACAGAGGCT+CGG 0.605241 1_2:+59475043 Msa0081010:CDS
TGAGATGGTAAGCAGTGAGA+TGG 0.605275 1_2:-59473994 None:intergenic
CACAGCTTCAACATGTCCTG+TGG 0.605340 1_2:-59476441 None:intergenic
GCCATTCCATGCATAGCAGA+GGG 0.607653 1_2:-59476287 None:intergenic
AGCCAAGGTCAATCAAGTAG+AGG 0.608356 1_2:+59473943 Msa0081010:CDS
GATCCATACACAGACGGACC+CGG 0.610764 1_2:-59476419 None:intergenic
GATGGCAAACTCCTACAAGA+TGG 0.610890 1_2:-59473976 None:intergenic
TCTGGCAATGGTGCAGACAG+AGG 0.613703 1_2:+59475038 Msa0081010:CDS
TAACCAGGACGTGCCTTATG+GGG 0.616802 1_2:+59474494 Msa0081010:CDS
TGTTAATGAACTTACGACGA+AGG 0.616840 1_2:-59473747 None:intergenic
AGTGACACACGCACACAACT+GGG 0.616845 1_2:-59472851 None:intergenic
ATTTCCATGCCAATGCCGCA+TGG 0.619250 1_2:+59476350 Msa0081010:CDS
TGTCATCAGCCACTGAAGCA+TGG 0.619461 1_2:-59476746 None:intergenic
TTACCTGTCAAAATAGCCAT+GGG 0.619641 1_2:+59477072 Msa0081010:three_prime_UTR
ATTCAAGTACCTCAGATGCA+AGG 0.620716 1_2:+59476233 Msa0081010:CDS
GAACCCTTAGAAACATTCAT+CGG 0.621432 1_2:-59474324 None:intergenic
TAAAACTATTCGAGGCAGGA+AGG 0.623215 1_2:-59474236 None:intergenic
GGCCATTCCATGCATAGCAG+AGG 0.624817 1_2:-59476288 None:intergenic
GATGTTGAGGATGAATCAGT+GGG 0.625050 1_2:+59475215 Msa0081010:CDS
TCAGCTCTTGTTAATCCAAG+CGG 0.627460 1_2:+59474765 Msa0081010:CDS
TGATGGCGGATATAACTGAC+CGG 0.631000 1_2:-59474391 None:intergenic
GGTCGAGATAAAGACGTAGG+AGG 0.631029 1_2:+59474027 Msa0081010:CDS
TGAATCATTGGAAATCTAGA+CGG 0.631570 1_2:-59476215 None:intergenic
ATCAGTGTCACTGTATTCGG+AGG 0.632909 1_2:+59473150 Msa0081010:five_prime_UTR
AAGCTTGATAATGAGACTAA+CGG 0.634639 1_2:+59473705 Msa0081010:CDS
CGTGTGGCTCAAAAGATCGA+AGG 0.637154 1_2:+59476477 Msa0081010:CDS
ATAATGTTAAGATATATAAG+TGG 0.640008 1_2:-59477165 None:intergenic
TCAACTTTGGTGCATAATGG+TGG 0.640234 1_2:+59476723 Msa0081010:CDS
GGATGTTGAGGATGAATCAG+TGG 0.640619 1_2:+59475214 Msa0081010:intron
AAAGGAAATGCCGGACCATG+CGG 0.646962 1_2:-59476365 None:intergenic
TTACCATCTCATAGTCCTAG+AGG 0.648723 1_2:+59474006 Msa0081010:CDS
CGACCTCTAGGACTATGAGA+TGG 0.648898 1_2:-59474009 None:intergenic
AGTGGTCAGATTTCAAGCCA+AGG 0.648899 1_2:+59473928 Msa0081010:CDS
ATGGGAATGCCTGACATGAA+CGG 0.649844 1_2:+59476188 Msa0081010:CDS
GGAAATGCGCTGTCATAAGG+TGG 0.651300 1_2:+59474806 Msa0081010:CDS
AAGTAGATGAAATGATGCCT+TGG 0.653879 1_2:+59474139 Msa0081010:CDS
TCCATTGAATAATCCAACCA+AGG 0.654964 1_2:-59474156 None:intergenic
TGACATTGATTCGATGATGG+CGG 0.655078 1_2:-59474405 None:intergenic
TAAGGTGGTAGAGCCATCCA+AGG 0.655378 1_2:+59474821 Msa0081010:CDS
TGTGAAAATGCGGCCATGTG+TGG 0.658564 1_2:-59476122 None:intergenic
ACCCAAATGGACGAAGAAGG+CGG 0.661772 1_2:-59472908 None:intergenic
GGAATGCCTGACATGAACGG+CGG 0.663426 1_2:+59476191 Msa0081010:CDS
TGGCCAGATCGAATACTCAA+GGG 0.668407 1_2:+59476306 Msa0081010:CDS
TTGATACTCTGCATTGATCG+TGG 0.671849 1_2:+59476944 Msa0081010:three_prime_UTR
AGAGGTCGAGATAAAGACGT+AGG 0.676780 1_2:+59474024 Msa0081010:CDS
CCTGTGGATCCATACACAGA+CGG 0.678896 1_2:-59476425 None:intergenic
TTAACAAGAGCTGAATCAGG+AGG 0.682638 1_2:-59474756 None:intergenic
ATTGAATGAGATTCCAATGT+CGG 0.685130 1_2:+59474104 Msa0081010:CDS
GATGCCCATCTGTGAAAATG+CGG 0.689000 1_2:-59476132 None:intergenic
ATACACAGACGGACCCGGAG+CGG 0.699444 1_2:-59476414 None:intergenic
ACGGAAAAGTAGAGACACTG+AGG 0.744015 1_2:+59475088 Msa0081010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGATTAAAAAATTAAGAT+TGG + chr1_2:59473215-59473234 Msa0081010:five_prime_UTR 10.0%
!!! ATAATTTTATACAGTTTTTC+AGG - chr1_2:59475540-59475559 None:intergenic 15.0%
!! TGAAAAACTGTATAAAATTA+TGG + chr1_2:59475539-59475558 Msa0081010:intron 15.0%
!! CAAAAGATTTATGAAATTAT+TGG + chr1_2:59475653-59475672 Msa0081010:intron 15.0%
!!! ACTTAATTCCTTATTTATTT+CGG + chr1_2:59475849-59475868 Msa0081010:intron 15.0%
!! AGAATAACAGAAAATTATTA+CGG - chr1_2:59476632-59476651 None:intergenic 15.0%
!! ATAATGTTAAGATATATAAG+TGG - chr1_2:59477168-59477187 None:intergenic 15.0%
!! ATGCAATATTTAAGAAGTTT+GGG - chr1_2:59472938-59472957 None:intergenic 20.0%
!! AATGCAATATTTAAGAAGTT+TGG - chr1_2:59472939-59472958 None:intergenic 20.0%
!!! TTTCTTAGTTTTGTTTGTTT+TGG + chr1_2:59473852-59473871 Msa0081010:intron 20.0%
!! TATTGGATAAAAGAAGTAAT+GGG + chr1_2:59474262-59474281 Msa0081010:CDS 20.0%
!! ATTATTAACTTACTTCACTA+TGG - chr1_2:59475124-59475143 None:intergenic 20.0%
!!! AGCTTATTTTATTTCCATTT+CGG + chr1_2:59475382-59475401 Msa0081010:intron 20.0%
!! ATCATAATTTATGTATACAG+AGG + chr1_2:59475411-59475430 Msa0081010:intron 20.0%
!! TGTTGACAAATATAGAATAT+TGG + chr1_2:59475576-59475595 Msa0081010:intron 20.0%
!! TTCATTGATAAAGACTCTTT+TGG + chr1_2:59473362-59473381 Msa0081010:intron 25.0%
!! TCATTGATAAAGACTCTTTT+GGG + chr1_2:59473363-59473382 Msa0081010:intron 25.0%
! TGTTTGATCATGAAATGAAA+TGG + chr1_2:59473807-59473826 Msa0081010:intron 25.0%
! AGTAATAACAATCCAAAGAT+AGG + chr1_2:59474057-59474076 Msa0081010:CDS 25.0%
! CTATTGGATAAAAGAAGTAA+TGG + chr1_2:59474261-59474280 Msa0081010:CDS 25.0%
! TAATGGGAATCAGATATTTA+GGG + chr1_2:59474278-59474297 Msa0081010:CDS 25.0%
! GAAAATAATAATGTTAGCAG+TGG + chr1_2:59474471-59474490 Msa0081010:CDS 25.0%
! ATGGGAAAAATTCATTACAT+TGG - chr1_2:59474604-59474623 None:intergenic 25.0%
! GTTATAGGAGTTAAGAATAA+AGG + chr1_2:59474711-59474730 Msa0081010:CDS 25.0%
!!! CTTCAATTAAAGTGTTTTCT+TGG - chr1_2:59475195-59475214 None:intergenic 25.0%
! CAAGAAAACACTTTAATTGA+AGG + chr1_2:59475193-59475212 Msa0081010:intron 25.0%
! AAACTAACCTTATTGCAATT+AGG - chr1_2:59475485-59475504 None:intergenic 25.0%
! TTGAATACACTTCATGAATA+CGG - chr1_2:59475727-59475746 None:intergenic 25.0%
!!! TTTTTTTGAACAAGCCAAAA+TGG - chr1_2:59475776-59475795 None:intergenic 25.0%
! GAATGATATTTACTTGAACT+TGG - chr1_2:59475955-59475974 None:intergenic 25.0%
! AACTAAAATATTAATGCCGA+GGG - chr1_2:59475979-59475998 None:intergenic 25.0%
! AAACTAAAATATTAATGCCG+AGG - chr1_2:59475980-59475999 None:intergenic 25.0%
CTTAACCAAAACATTAACCA+TGG + chr1_2:59472791-59472810 Msa0081010:five_prime_UTR 30.0%
! CTAAACCATGGTTAATGTTT+TGG - chr1_2:59472799-59472818 None:intergenic 30.0%
AAGGTTTCTATTCTAAACCA+TGG - chr1_2:59472811-59472830 None:intergenic 30.0%
AGACAAAAACAGGGAAAAAA+AGG - chr1_2:59472830-59472849 None:intergenic 30.0%
AGATTATTCACACAACAAGA+AGG - chr1_2:59473032-59473051 None:intergenic 30.0%
TCCAGTTGAAAAATGATAAC+TGG + chr1_2:59473086-59473105 Msa0081010:five_prime_UTR 30.0%
CCAGTTGAAAAATGATAACT+GGG + chr1_2:59473087-59473106 Msa0081010:five_prime_UTR 30.0%
AAAAATGATAACTGGGTCAT+TGG + chr1_2:59473094-59473113 Msa0081010:five_prime_UTR 30.0%
! CATTGATAAAGACTCTTTTG+GGG + chr1_2:59473364-59473383 Msa0081010:intron 30.0%
ATCTCACTCATAGTTTATTG+TGG + chr1_2:59473471-59473490 Msa0081010:intron 30.0%
CTTTGTCTTCAAACTTCATT+TGG + chr1_2:59473513-59473532 Msa0081010:five_prime_UTR 30.0%
AAACTTCATTTGGATTCCAA+AGG + chr1_2:59473523-59473542 Msa0081010:five_prime_UTR 30.0%
ATTGCTTCCAACATATTCTT+CGG - chr1_2:59473563-59473582 None:intergenic 30.0%
AATGCTAATACTAAGAGCTT+TGG + chr1_2:59473580-59473599 Msa0081010:five_prime_UTR 30.0%
!!! AGCTTTGGTTTTTTGATTTG+TGG + chr1_2:59473595-59473614 Msa0081010:five_prime_UTR 30.0%
AAACGGTATAACTCATAAAG+AGG - chr1_2:59473675-59473694 None:intergenic 30.0%
TCTTTATGAGTTATACCGTT+TGG + chr1_2:59473674-59473693 Msa0081010:CDS 30.0%
!! AAGCTTGATAATGAGACTAA+CGG + chr1_2:59473705-59473724 Msa0081010:CDS 30.0%
!! TGGATTTGATTTGAATGTGT+AGG + chr1_2:59473872-59473891 Msa0081010:intron 30.0%
AGCTCAAAAAAATCATTCTC+AGG - chr1_2:59473898-59473917 None:intergenic 30.0%
!!! TGAGAATGATTTTTTTGAGC+TGG + chr1_2:59473897-59473916 Msa0081010:CDS 30.0%
!!! ATGATTTTTTTGAGCTGGTT+TGG + chr1_2:59473902-59473921 Msa0081010:CDS 30.0%
!!! TGATTTTTTTGAGCTGGTTT+GGG + chr1_2:59473903-59473922 Msa0081010:CDS 30.0%
AATCCAAAGATAGGAAAGTT+TGG + chr1_2:59474066-59474085 Msa0081010:CDS 30.0%
ATTGAATGAGATTCCAATGT+CGG + chr1_2:59474104-59474123 Msa0081010:CDS 30.0%
TGATTTCTTTCATGAACTCA+CGG + chr1_2:59474206-59474225 Msa0081010:CDS 30.0%
CAATAGAGTAAAACTATTCG+AGG - chr1_2:59474247-59474266 None:intergenic 30.0%
!! CTCGAATAGTTTTACTCTAT+TGG + chr1_2:59474245-59474264 Msa0081010:CDS 30.0%
! GTAATGGGAATCAGATATTT+AGG + chr1_2:59474277-59474296 Msa0081010:CDS 30.0%
ATCTGTAACTGTTAGATCTA+GGG + chr1_2:59474434-59474453 Msa0081010:CDS 30.0%
! TGAATTTTTCCCATTTTGCA+AGG + chr1_2:59474610-59474629 Msa0081010:CDS 30.0%
ATCCAAATCGAGATTTGAAA+CGG + chr1_2:59475069-59475088 Msa0081010:CDS 30.0%
! GTGTTTTCTTGGTTTATAGA+GGG - chr1_2:59475184-59475203 None:intergenic 30.0%
! AGTGTTTTCTTGGTTTATAG+AGG - chr1_2:59475185-59475204 None:intergenic 30.0%
ACTTTAATTGAAGGATGTTG+AGG + chr1_2:59475202-59475221 Msa0081010:intron 30.0%
AAGTGCATAATCTATCTGAA+AGG + chr1_2:59475297-59475316 Msa0081010:CDS 30.0%
AGTGCATAATCTATCTGAAA+GGG + chr1_2:59475298-59475317 Msa0081010:CDS 30.0%
AACATGACACAAATAACAGA+TGG - chr1_2:59475333-59475352 None:intergenic 30.0%
TGGAAATAAAATAAGCTCGA+GGG - chr1_2:59475379-59475398 None:intergenic 30.0%
ATGGAAATAAAATAAGCTCG+AGG - chr1_2:59475380-59475399 None:intergenic 30.0%
ACTCATACCTAATTGCAATA+AGG + chr1_2:59475475-59475494 Msa0081010:CDS 30.0%
! AAATGTCAGAAGTTCCATTT+TGG + chr1_2:59475759-59475778 Msa0081010:intron 30.0%
CAGAAATGCCGAAATAAATA+AGG - chr1_2:59475860-59475879 None:intergenic 30.0%
ACTAAAATATTAATGCCGAG+GGG - chr1_2:59475978-59475997 None:intergenic 30.0%
TGAATCATTGGAAATCTAGA+CGG - chr1_2:59476218-59476237 None:intergenic 30.0%
TGGATTTAAACAGTCAACTT+TGG + chr1_2:59476710-59476729 Msa0081010:intron 30.0%
AATCACAAATTTGTATTGCC+TGG - chr1_2:59476786-59476805 None:intergenic 30.0%
AGGCAATACAAATTTGTGAT+TGG + chr1_2:59476785-59476804 Msa0081010:exon 30.0%
TATTGTGAACATGTATCAGT+AGG + chr1_2:59476812-59476831 Msa0081010:intron 30.0%
TACTTTGACATAAAGCATAG+AGG + chr1_2:59476867-59476886 Msa0081010:intron 30.0%
!! ACTTATTGTTTGAGTTGTAC+CGG + chr1_2:59476911-59476930 Msa0081010:intron 30.0%
! AAAGATGAGAAACGACATTT+TGG - chr1_2:59477003-59477022 None:intergenic 30.0%
AAATATCCTCTTCAGTAATC+TGG - chr1_2:59477037-59477056 None:intergenic 30.0%
!!! TCTGTGCAATTTTCTAGTTT+CGG - chr1_2:59477109-59477128 None:intergenic 30.0%
! CTAGAAAATTGCACAGATTT+TGG + chr1_2:59477112-59477131 Msa0081010:three_prime_UTR 30.0%
CACTATGAAAGATCTGAATA+AGG - chr1_2:59477226-59477245 None:intergenic 30.0%
GATCTTTCATAGTGATTCTT+TGG + chr1_2:59477232-59477251 Msa0081010:three_prime_UTR 30.0%
GATAACTTCTGAGTTGCATT+TGG + chr1_2:59472993-59473012 Msa0081010:five_prime_UTR 35.0%
!! CCCAGTTATCATTTTTCAAC+TGG - chr1_2:59473090-59473109 None:intergenic 35.0%
!! AATACAGTGACACTGATTCT+CGG - chr1_2:59473147-59473166 None:intergenic 35.0%
! AGAATCAGTGTCACTGTATT+CGG + chr1_2:59473147-59473166 Msa0081010:five_prime_UTR 35.0%
GCACTAATCAGCATATAAGT+CGG - chr1_2:59473188-59473207 None:intergenic 35.0%
GTCACTTACTTTACTTGACA+AGG + chr1_2:59473244-59473263 Msa0081010:five_prime_UTR 35.0%
TAGTTTATTGTGGCTTACGA+CGG + chr1_2:59473481-59473500 Msa0081010:intron 35.0%
GATAACACCGAAGAATATGT+TGG + chr1_2:59473553-59473572 Msa0081010:five_prime_UTR 35.0%
!!! GATTTGTGGTTTTTTAGCTG+AGG + chr1_2:59473609-59473628 Msa0081010:five_prime_UTR 35.0%
!!! TGGTTTTTTAGCTGAGGTTT+TGG + chr1_2:59473615-59473634 Msa0081010:five_prime_UTR 35.0%
TGTTAATGAACTTACGACGA+AGG - chr1_2:59473750-59473769 None:intergenic 35.0%
TCACCAAACTTTCCTATCTT+TGG - chr1_2:59474072-59474091 None:intergenic 35.0%
! AAGTTTGGTGATTTAGACTC+TGG + chr1_2:59474081-59474100 Msa0081010:CDS 35.0%
AAGTAGATGAAATGATGCCT+TGG + chr1_2:59474139-59474158 Msa0081010:CDS 35.0%
TCCATTGAATAATCCAACCA+AGG - chr1_2:59474159-59474178 None:intergenic 35.0%
TGGTTGGATTATTCAATGGA+TGG + chr1_2:59474159-59474178 Msa0081010:CDS 35.0%
! AGAACCGATGAATGTTTCTA+AGG + chr1_2:59474320-59474339 Msa0081010:CDS 35.0%
! GAACCGATGAATGTTTCTAA+GGG + chr1_2:59474321-59474340 Msa0081010:CDS 35.0%
GAACCCTTAGAAACATTCAT+CGG - chr1_2:59474327-59474346 None:intergenic 35.0%
!! GTTTGACATTGATTCGATGA+TGG - chr1_2:59474411-59474430 None:intergenic 35.0%
CATCTGTAACTGTTAGATCT+AGG + chr1_2:59474433-59474452 Msa0081010:CDS 35.0%
AGAGCTAATCTTCAGAACAT+AGG + chr1_2:59474648-59474667 Msa0081010:CDS 35.0%
TCAGCAAGATCAGATGTTAT+AGG + chr1_2:59474696-59474715 Msa0081010:CDS 35.0%
! GCATTTGGTTCAAGCAATTT+CGG - chr1_2:59474867-59474886 None:intergenic 35.0%
TGTTTAGTAGCTACAGCATT+TGG - chr1_2:59474882-59474901 None:intergenic 35.0%
ATTGTCACCAAGAACTTGAA+TGG - chr1_2:59474952-59474971 None:intergenic 35.0%
! ATTCAAGTTCTTGGTGACAA+TGG + chr1_2:59474951-59474970 Msa0081010:CDS 35.0%
TTCCGTTTCAAATCTCGATT+TGG - chr1_2:59475074-59475093 None:intergenic 35.0%
TGAATCAGTGGGAGTTAAAA+AGG + chr1_2:59475226-59475245 Msa0081010:CDS 35.0%
GAATCAGTGGGAGTTAAAAA+GGG + chr1_2:59475227-59475246 Msa0081010:CDS 35.0%
ATTATGATCATCAGCCGAAA+TGG - chr1_2:59475399-59475418 None:intergenic 35.0%
CTAAGAAGAGCAAAATCAGA+AGG - chr1_2:59475512-59475531 None:intergenic 35.0%
! TAGAATATTGGTTGCCACTA+TGG + chr1_2:59475588-59475607 Msa0081010:intron 35.0%
AGCTAAGTTTGAATCCATAG+TGG - chr1_2:59475605-59475624 None:intergenic 35.0%
AAGTAAATATCATTCCCCCT+CGG + chr1_2:59475960-59475979 Msa0081010:intron 35.0%
CTAAAATATTAATGCCGAGG+GGG - chr1_2:59475977-59475996 None:intergenic 35.0%
! TTAGGTATGGGTTATGGAAT+GGG + chr1_2:59476170-59476189 Msa0081010:CDS 35.0%
! ATCTGAGGTACTTGAATCAT+TGG - chr1_2:59476230-59476249 None:intergenic 35.0%
ATATGATTTCCTTGCATCTG+AGG - chr1_2:59476245-59476264 None:intergenic 35.0%
!! TTAATTTGTGAGTCCACATC+TGG - chr1_2:59476503-59476522 None:intergenic 35.0%
CAAATTAAGCAAAACACTGC+TGG + chr1_2:59476515-59476534 Msa0081010:CDS 35.0%
ACACTAGTATAACAGAGAAG+CGG - chr1_2:59476674-59476693 None:intergenic 35.0%
GTTGACTGTTTAAATCCAAC+AGG - chr1_2:59476708-59476727 None:intergenic 35.0%
TTCAAACCAGATTACTGAAG+AGG + chr1_2:59477028-59477047 Msa0081010:three_prime_UTR 35.0%
TTTACCTGTCAAAATAGCCA+TGG + chr1_2:59477071-59477090 Msa0081010:three_prime_UTR 35.0%
TTACCTGTCAAAATAGCCAT+GGG + chr1_2:59477072-59477091 Msa0081010:three_prime_UTR 35.0%
!! TTGCACAGATTTTGGTATCT+TGG + chr1_2:59477120-59477139 Msa0081010:three_prime_UTR 35.0%
!! TGCACAGATTTTGGTATCTT+GGG + chr1_2:59477121-59477140 Msa0081010:three_prime_UTR 35.0%
CAACTGGGAAGACAAAAACA+GGG - chr1_2:59472839-59472858 None:intergenic 40.0%
ACAACTGGGAAGACAAAAAC+AGG - chr1_2:59472840-59472859 None:intergenic 40.0%
AAGTTTGGGAATGACCCAAA+TGG - chr1_2:59472924-59472943 None:intergenic 40.0%
AGTTTATTGTGGCTTACGAC+GGG + chr1_2:59473482-59473501 Msa0081010:intron 40.0%
CTTCATTTGGATTCCAAAGG+TGG + chr1_2:59473526-59473545 Msa0081010:five_prime_UTR 40.0%
!! GGTGTTATCTTTTCCACCTT+TGG - chr1_2:59473542-59473561 None:intergenic 40.0%
TACCTCTACTTGATTGACCT+TGG - chr1_2:59473948-59473967 None:intergenic 40.0%
GTAGAAAGAGTCCATCTTGT+AGG + chr1_2:59473965-59473984 Msa0081010:CDS 40.0%
TTACCATCTCATAGTCCTAG+AGG + chr1_2:59474006-59474025 Msa0081010:CDS 40.0%
ATTTCATCTACTTCGCGAGA+TGG - chr1_2:59474132-59474151 None:intergenic 40.0%
AGATGAAATGATGCCTTGGT+TGG + chr1_2:59474143-59474162 Msa0081010:CDS 40.0%
GCCTTGGTTGGATTATTCAA+TGG + chr1_2:59474155-59474174 Msa0081010:CDS 40.0%
TAAAACTATTCGAGGCAGGA+AGG - chr1_2:59474239-59474258 None:intergenic 40.0%
AGAGTAAAACTATTCGAGGC+AGG - chr1_2:59474243-59474262 None:intergenic 40.0%
!! TGACATTGATTCGATGATGG+CGG - chr1_2:59474408-59474427 None:intergenic 40.0%
TAATGTTAGCAGTGGTAACC+AGG + chr1_2:59474479-59474498 Msa0081010:CDS 40.0%
ATGCGAGTAATATCCCCATA+AGG - chr1_2:59474510-59474529 None:intergenic 40.0%
TAAGCTAGAAAAATCGCTCG+AGG - chr1_2:59474541-59474560 None:intergenic 40.0%
AAGCAAGATCCTATAATGCC+TGG + chr1_2:59474570-59474589 Msa0081010:CDS 40.0%
ATTACATTGGAACCATTGCC+AGG - chr1_2:59474591-59474610 None:intergenic 40.0%
TTAACAAGAGCTGAATCAGG+AGG - chr1_2:59474759-59474778 None:intergenic 40.0%
GGATTAACAAGAGCTGAATC+AGG - chr1_2:59474762-59474781 None:intergenic 40.0%
TCAGCTCTTGTTAATCCAAG+CGG + chr1_2:59474765-59474784 Msa0081010:CDS 40.0%
CAAAGGTTTCAAATCAGCCT+TGG - chr1_2:59474841-59474860 None:intergenic 40.0%
ATTCCATTCTCTTTGCAAGC+AGG - chr1_2:59474912-59474931 None:intergenic 40.0%
! CAACCTTCCATTCAAGTTCT+TGG + chr1_2:59474942-59474961 Msa0081010:CDS 40.0%
TCACCAAGAACTTGAATGGA+AGG - chr1_2:59474948-59474967 None:intergenic 40.0%
GATGTTGAGGATGAATCAGT+GGG + chr1_2:59475215-59475234 Msa0081010:CDS 40.0%
TCGGCATTTCTGACTTCATA+CGG + chr1_2:59475868-59475887 Msa0081010:intron 40.0%
TTTCTGACTTCATACGGACT+AGG + chr1_2:59475874-59475893 Msa0081010:intron 40.0%
TAAAGCTTCTATGCTGGATG+AGG + chr1_2:59475901-59475920 Msa0081010:CDS 40.0%
TGACATCATCTGCGTAAGAT+AGG - chr1_2:59476039-59476058 None:intergenic 40.0%
TCTTACGCAGATGATGTCAA+TGG + chr1_2:59476040-59476059 Msa0081010:intron 40.0%
CTTACGCAGATGATGTCAAT+GGG + chr1_2:59476041-59476060 Msa0081010:intron 40.0%
ATGCATATGGGGTTAGGTAT+GGG + chr1_2:59476158-59476177 Msa0081010:CDS 40.0%
! GTTAGGTATGGGTTATGGAA+TGG + chr1_2:59476169-59476188 Msa0081010:CDS 40.0%
ATTCAAGTACCTCAGATGCA+AGG + chr1_2:59476233-59476252 Msa0081010:CDS 40.0%
AAACCCTTGAGTATTCGATC+TGG - chr1_2:59476312-59476331 None:intergenic 40.0%
AGATCGAATACTCAAGGGTT+TGG + chr1_2:59476311-59476330 Msa0081010:CDS 40.0%
ACATGTTGAAGCTGTGAATC+CGG + chr1_2:59476448-59476467 Msa0081010:CDS 40.0%
GAAAATTGATCACAGAGACC+TGG - chr1_2:59476588-59476607 None:intergenic 40.0%
! CAGTCAACTTTGGTGCATAA+TGG + chr1_2:59476720-59476739 Msa0081010:intron 40.0%
! TCAACTTTGGTGCATAATGG+TGG + chr1_2:59476723-59476742 Msa0081010:CDS 40.0%
GAGTATCAATCATAACCTGC+CGG - chr1_2:59476933-59476952 None:intergenic 40.0%
! TTGATACTCTGCATTGATCG+TGG + chr1_2:59476944-59476963 Msa0081010:three_prime_UTR 40.0%
!!! ATTCCCATGGCTATTTTGAC+AGG - chr1_2:59477078-59477097 None:intergenic 40.0%
!! GCACAGATTTTGGTATCTTG+GGG + chr1_2:59477122-59477141 Msa0081010:three_prime_UTR 40.0%
ATGACCCAAATGGACGAAGA+AGG - chr1_2:59472914-59472933 None:intergenic 45.0%
! ATCAGTGTCACTGTATTCGG+AGG + chr1_2:59473150-59473169 Msa0081010:five_prime_UTR 45.0%
CAAGCTTCTCTCTAGCCAAA+CGG - chr1_2:59473692-59473711 None:intergenic 45.0%
AGTGGTCAGATTTCAAGCCA+AGG + chr1_2:59473928-59473947 Msa0081010:CDS 45.0%
AGCCAAGGTCAATCAAGTAG+AGG + chr1_2:59473943-59473962 Msa0081010:CDS 45.0%
GATGGCAAACTCCTACAAGA+TGG - chr1_2:59473979-59473998 None:intergenic 45.0%
TGAGATGGTAAGCAGTGAGA+TGG - chr1_2:59473997-59474016 None:intergenic 45.0%
ACGTCTTTATCTCGACCTCT+AGG - chr1_2:59474024-59474043 None:intergenic 45.0%
AGAGGTCGAGATAAAGACGT+AGG + chr1_2:59474024-59474043 Msa0081010:CDS 45.0%
GGCTCTTTGCAACACGAATA+TGG + chr1_2:59474180-59474199 Msa0081010:CDS 45.0%
TAAGGGTTCTTCAGCTGAAC+AGG + chr1_2:59474338-59474357 Msa0081010:CDS 45.0%
GCAAGACATAAAGCTAGTGC+CGG + chr1_2:59474372-59474391 Msa0081010:CDS 45.0%
!! TGATGGCGGATATAACTGAC+CGG - chr1_2:59474394-59474413 None:intergenic 45.0%
GAAAAATCGCTCGAGGAAGA+TGG - chr1_2:59474534-59474553 None:intergenic 45.0%
GATCCTATAATGCCTGGCAA+TGG + chr1_2:59474576-59474595 Msa0081010:CDS 45.0%
GAACCATTGCCAGGCATTAT+AGG - chr1_2:59474582-59474601 None:intergenic 45.0%
! TTAGCTCTCACAATAGCTGC+AGG - chr1_2:59474636-59474655 None:intergenic 45.0%
CAGAACATAGGCTTGAAGTC+TGG + chr1_2:59474660-59474679 Msa0081010:CDS 45.0%
ACCTTATGACAGCGCATTTC+CGG - chr1_2:59474807-59474826 None:intergenic 45.0%
GGTTTCAAATCAGCCTTGGA+TGG - chr1_2:59474837-59474856 None:intergenic 45.0%
TCAAGCAATTTCGGCTGCAA+AGG - chr1_2:59474858-59474877 None:intergenic 45.0%
AAGCCTGCTTGCAAAGAGAA+TGG + chr1_2:59474906-59474925 Msa0081010:CDS 45.0%
TCTTCTGTTTGCTCTGGCAA+TGG + chr1_2:59475026-59475045 Msa0081010:CDS 45.0%
ACGGAAAAGTAGAGACACTG+AGG + chr1_2:59475088-59475107 Msa0081010:CDS 45.0%
GGATGTTGAGGATGAATCAG+TGG + chr1_2:59475214-59475233 Msa0081010:intron 45.0%
AGTGGGAGTTAAAAAGGGAG+CGG + chr1_2:59475232-59475251 Msa0081010:CDS 45.0%
GATTATGCACTTCAGCAGCA+CGG - chr1_2:59475289-59475308 None:intergenic 45.0%
TCTATCTGAAAGGGTGAGCA+AGG + chr1_2:59475307-59475326 Msa0081010:intron 45.0%
GCTCGAGGGAAAATATGTGT+GGG - chr1_2:59475365-59475384 None:intergenic 45.0%
AGCTCGAGGGAAAATATGTG+TGG - chr1_2:59475366-59475385 None:intergenic 45.0%
GGTGGATAAAGCTTCTATGC+TGG + chr1_2:59475895-59475914 Msa0081010:intron 45.0%
CCAGCAGGTAACATCATTTG+AGG - chr1_2:59476083-59476102 None:intergenic 45.0%
CCTCAAATGATGTTACCTGC+TGG + chr1_2:59476080-59476099 Msa0081010:CDS 45.0%
! ATGGCCGCATTTTCACAGAT+GGG + chr1_2:59476128-59476147 Msa0081010:CDS 45.0%
GATGCCCATCTGTGAAAATG+CGG - chr1_2:59476135-59476154 None:intergenic 45.0%
! GCATTTTCACAGATGGGCAT+CGG + chr1_2:59476134-59476153 Msa0081010:CDS 45.0%
CATGCATATGGGGTTAGGTA+TGG + chr1_2:59476157-59476176 Msa0081010:CDS 45.0%
! ATGGGGTTAGGTATGGGTTA+TGG + chr1_2:59476164-59476183 Msa0081010:CDS 45.0%
ATGGGAATGCCTGACATGAA+CGG + chr1_2:59476188-59476207 Msa0081010:CDS 45.0%
ATGGCCAGATCGAATACTCA+AGG + chr1_2:59476305-59476324 Msa0081010:CDS 45.0%
TGGCCAGATCGAATACTCAA+GGG + chr1_2:59476306-59476325 Msa0081010:CDS 45.0%
TACTCAAGGGTTTGGACTTC+CGG + chr1_2:59476319-59476338 Msa0081010:CDS 45.0%
CCTCCTGAAAAAGGAAATGC+CGG - chr1_2:59476377-59476396 None:intergenic 45.0%
!!! CGGCATTTCCTTTTTCAGGA+GGG + chr1_2:59476375-59476394 Msa0081010:CDS 45.0%
ATAAGAGGCCCTCCTGAAAA+AGG - chr1_2:59476386-59476405 None:intergenic 45.0%
TCTTATGAACTCATCCGCTC+CGG + chr1_2:59476400-59476419 Msa0081010:CDS 45.0%
AAAAGATCGAAGGCCAGATG+TGG + chr1_2:59476487-59476506 Msa0081010:CDS 45.0%
GGGATAAACAGACCTGGTTA+GGG - chr1_2:59476562-59476581 None:intergenic 45.0%
AGGGATAAACAGACCTGGTT+AGG - chr1_2:59476563-59476582 None:intergenic 45.0%
TGGTTAGGGATAAACAGACC+TGG - chr1_2:59476568-59476587 None:intergenic 45.0%
AGGTCTGTTTATCCCTAACC+AGG + chr1_2:59476567-59476586 Msa0081010:intron 45.0%
TGATCACAGAGACCTGGTTA+GGG - chr1_2:59476582-59476601 None:intergenic 45.0%
TTGATCACAGAGACCTGGTT+AGG - chr1_2:59476583-59476602 None:intergenic 45.0%
GTGTGTGTGAACTAACCTGT+TGG + chr1_2:59476690-59476709 Msa0081010:intron 45.0%
!! ATTGTTTGAGTTGTACCGGC+AGG + chr1_2:59476915-59476934 Msa0081010:intron 45.0%
TCGTGGCTAGTAGAAGAATC+AGG + chr1_2:59476961-59476980 Msa0081010:three_prime_UTR 45.0%
TTCGGAGACTAGAATTCCCA+TGG - chr1_2:59477091-59477110 None:intergenic 45.0%
AGTGACACACGCACACAACT+GGG - chr1_2:59472854-59472873 None:intergenic 50.0%
ACCCAAATGGACGAAGAAGG+CGG - chr1_2:59472911-59472930 None:intergenic 50.0%
CTGATTCTCGGCTGAGATCA+AGG - chr1_2:59473135-59473154 None:intergenic 50.0%
!! TTTGAGCTGGTTTGGGAGAG+TGG + chr1_2:59473910-59473929 Msa0081010:CDS 50.0%
!! CGACCTCTAGGACTATGAGA+TGG - chr1_2:59474012-59474031 None:intergenic 50.0%
GGTCGAGATAAAGACGTAGG+AGG + chr1_2:59474027-59474046 Msa0081010:CDS 50.0%
CGAGATAAAGACGTAGGAGG+AGG + chr1_2:59474030-59474049 Msa0081010:CDS 50.0%
GTAACCAGGACGTGCCTTAT+GGG + chr1_2:59474493-59474512 Msa0081010:CDS 50.0%
TAACCAGGACGTGCCTTATG+GGG + chr1_2:59474494-59474513 Msa0081010:CDS 50.0%
AGCTGCAGGCCTTGCAAAAT+GGG - chr1_2:59474622-59474641 None:intergenic 50.0%
TAGCTGCAGGCCTTGCAAAA+TGG - chr1_2:59474623-59474642 None:intergenic 50.0%
TCCAAGCGGTGAGTGTTCAA+AGG + chr1_2:59474779-59474798 Msa0081010:CDS 50.0%
TCCTTTGAACACTCACCGCT+TGG - chr1_2:59474783-59474802 None:intergenic 50.0%
CGGTGAGTGTTCAAAGGAAC+CGG + chr1_2:59474785-59474804 Msa0081010:CDS 50.0%
ACCGGAAATGCGCTGTCATA+AGG + chr1_2:59474803-59474822 Msa0081010:CDS 50.0%
GGAAATGCGCTGTCATAAGG+TGG + chr1_2:59474806-59474825 Msa0081010:CDS 50.0%
TAAGGTGGTAGAGCCATCCA+AGG + chr1_2:59474821-59474840 Msa0081010:CDS 50.0%
! CTTGGTGACAATGGCGCTAA+AGG + chr1_2:59474960-59474979 Msa0081010:CDS 50.0%
GGACACACAGCTGCTGAAAA+AGG + chr1_2:59474981-59475000 Msa0081010:CDS 50.0%
CACAGCTGCTGAAAAAGGCA+TGG + chr1_2:59474986-59475005 Msa0081010:CDS 50.0%
! AGCTGCTGAAAAAGGCATGG+AGG + chr1_2:59474989-59475008 Msa0081010:CDS 50.0%
! TGCTGAAAAAGGCATGGAGG+TGG + chr1_2:59474992-59475011 Msa0081010:CDS 50.0%
GCCTCTTCTTCTGTTTGCTC+TGG + chr1_2:59475020-59475039 Msa0081010:CDS 50.0%
GCCAGAGCAAACAGAAGAAG+AGG - chr1_2:59475024-59475043 None:intergenic 50.0%
! TTCAGCAGCACGGCTTCTTT+TGG - chr1_2:59475279-59475298 None:intergenic 50.0%
GTATACAGAGGCGAAGAGAC+AGG + chr1_2:59475423-59475442 Msa0081010:intron 50.0%
!! CTGACTTCATACGGACTAGG+TGG + chr1_2:59475877-59475896 Msa0081010:intron 50.0%
CAGATGATGTCAATGGGAGC+TGG + chr1_2:59476047-59476066 Msa0081010:intron 50.0%
TGTGAAAATGCGGCCATGTG+TGG - chr1_2:59476125-59476144 None:intergenic 50.0%
! CATGGCCGCATTTTCACAGA+TGG + chr1_2:59476127-59476146 Msa0081010:CDS 50.0%
!! ATGGGCATCGGCATGCATAT+GGG + chr1_2:59476146-59476165 Msa0081010:CDS 50.0%
ATCGGCATGCATATGGGGTT+AGG + chr1_2:59476152-59476171 Msa0081010:CDS 50.0%
ACCCTCTGCTATGCATGGAA+TGG + chr1_2:59476286-59476305 Msa0081010:CDS 50.0%
GCCATTCCATGCATAGCAGA+GGG - chr1_2:59476290-59476309 None:intergenic 50.0%
ACTCAAGGGTTTGGACTTCC+GGG + chr1_2:59476320-59476339 Msa0081010:CDS 50.0%
ATTTCCATGCCAATGCCGCA+TGG + chr1_2:59476350-59476369 Msa0081010:CDS 50.0%
AAAGGAAATGCCGGACCATG+CGG - chr1_2:59476368-59476387 None:intergenic 50.0%
! GGTCCGGCATTTCCTTTTTC+AGG + chr1_2:59476371-59476390 Msa0081010:CDS 50.0%
!!! CCGGCATTTCCTTTTTCAGG+AGG + chr1_2:59476374-59476393 Msa0081010:CDS 50.0%
GGAGCGGATGAGTTCATAAG+AGG - chr1_2:59476401-59476420 None:intergenic 50.0%
CTTATGAACTCATCCGCTCC+GGG + chr1_2:59476401-59476420 Msa0081010:CDS 50.0%
CCTGTGGATCCATACACAGA+CGG - chr1_2:59476428-59476447 None:intergenic 50.0%
CACAGCTTCAACATGTCCTG+TGG - chr1_2:59476444-59476463 None:intergenic 50.0%
CGTGTGGCTCAAAAGATCGA+AGG + chr1_2:59476477-59476496 Msa0081010:CDS 50.0%
TACAAGCCAGATCCCTAACC+AGG + chr1_2:59476547-59476566 Msa0081010:CDS 50.0%
AACAGACCTGGTTAGGGATC+TGG - chr1_2:59476556-59476575 None:intergenic 50.0%
TAATGGTGGCCATGCTTCAG+TGG + chr1_2:59476737-59476756 Msa0081010:CDS 50.0%
TGTCATCAGCCACTGAAGCA+TGG - chr1_2:59476749-59476768 None:intergenic 50.0%
GACAGTGAAGCTGCTAATCC+AGG + chr1_2:59476765-59476784 Msa0081010:CDS 50.0%
CAGTGACACACGCACACAAC+TGG - chr1_2:59472855-59472874 None:intergenic 55.0%
! GTGTGCGTGTGTCACTGCAT+TGG + chr1_2:59472858-59472877 Msa0081010:five_prime_UTR 55.0%
GCCGCCTTCTTCGTCCATTT+GGG + chr1_2:59472907-59472926 Msa0081010:five_prime_UTR 55.0%
GACTAACGGCGCAAGTGTAG+CGG + chr1_2:59473719-59473738 Msa0081010:CDS 55.0%
GGTAACCAGGACGTGCCTTA+TGG + chr1_2:59474492-59474511 Msa0081010:CDS 55.0%
TATCCCCATAAGGCACGTCC+TGG - chr1_2:59474500-59474519 None:intergenic 55.0%
TCTGGCAATGGTGCAGACAG+AGG + chr1_2:59475038-59475057 Msa0081010:CDS 55.0%
CAATGGTGCAGACAGAGGCT+CGG + chr1_2:59475043-59475062 Msa0081010:CDS 55.0%
GGAGTTAAAAAGGGAGCGGC+TGG + chr1_2:59475236-59475255 Msa0081010:CDS 55.0%
TGCATGTGCTGCATTCCAGC+AGG - chr1_2:59476098-59476117 None:intergenic 55.0%
GCACATGCATGCACCACACA+TGG + chr1_2:59476109-59476128 Msa0081010:CDS 55.0%
!! GATGGGCATCGGCATGCATA+TGG + chr1_2:59476145-59476164 Msa0081010:CDS 55.0%
!! TGGGCATCGGCATGCATATG+GGG + chr1_2:59476147-59476166 Msa0081010:CDS 55.0%
GGAATGCCTGACATGAACGG+CGG + chr1_2:59476191-59476210 Msa0081010:CDS 55.0%
GAATGCCTGACATGAACGGC+GGG + chr1_2:59476192-59476211 Msa0081010:CDS 55.0%
GGCCATTCCATGCATAGCAG+AGG - chr1_2:59476291-59476310 None:intergenic 55.0%
GGCATGGAAATTCCCTGTCC+CGG - chr1_2:59476341-59476360 None:intergenic 55.0%
GATCCATACACAGACGGACC+CGG - chr1_2:59476422-59476441 None:intergenic 55.0%
CCGTCTGTGTATGGATCCAC+AGG + chr1_2:59476425-59476444 Msa0081010:CDS 55.0%
TTTGAGCCACACGCTGAAGC+CGG - chr1_2:59476470-59476489 None:intergenic 55.0%
CGCCGCCTTCTTCGTCCATT+TGG + chr1_2:59472906-59472925 Msa0081010:five_prime_UTR 60.0%
!! TCGCGAGATGGCACCGACAT+TGG - chr1_2:59474120-59474139 None:intergenic 60.0%
AAAAAGGGAGCGGCTGGACG+AGG + chr1_2:59475242-59475261 Msa0081010:CDS 60.0%
ATGCCCGTTGCGCATATGCC+TGG + chr1_2:59476263-59476282 Msa0081010:CDS 60.0%
GGTCCAGGCATATGCGCAAC+GGG - chr1_2:59476269-59476288 None:intergenic 60.0%
GGGTCCAGGCATATGCGCAA+CGG - chr1_2:59476270-59476289 None:intergenic 60.0%
CCATGCATAGCAGAGGGTCC+AGG - chr1_2:59476284-59476303 None:intergenic 60.0%
CCTGGACCCTCTGCTATGCA+TGG + chr1_2:59476281-59476300 Msa0081010:CDS 60.0%
AGGGTTTGGACTTCCGGGAC+AGG + chr1_2:59476325-59476344 Msa0081010:CDS 60.0%
GGGTTTGGACTTCCGGGACA+GGG + chr1_2:59476326-59476345 Msa0081010:CDS 60.0%
CATGCCAATGCCGCATGGTC+CGG + chr1_2:59476355-59476374 Msa0081010:CDS 60.0%
AATGCCGGACCATGCGGCAT+TGG - chr1_2:59476362-59476381 None:intergenic 60.0%
ATACACAGACGGACCCGGAG+CGG - chr1_2:59476417-59476436 None:intergenic 60.0%
GTGAATCCGGCTTCAGCGTG+TGG + chr1_2:59476461-59476480 Msa0081010:CDS 60.0%
!! CGGACCATGCGGCATTGGCA+TGG - chr1_2:59476357-59476376 None:intergenic 65.0%
GCTCCGGGTCCGTCTGTGTA+TGG + chr1_2:59476416-59476435 Msa0081010:CDS 65.0%
GCGGCTGGACGAGGAGTTGC+AGG + chr1_2:59475251-59475270 Msa0081010:CDS 70.0%
GACGGCCCGCCGTTCATGTC+AGG - chr1_2:59476200-59476219 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 59472779 59477280 59472779 ID=Msa0081010;Name=Msa0081010
chr1_2 mRNA 59472779 59477280 59472779 ID=Msa0081010-mRNA-1;Parent=Msa0081010;Name=Msa0081010-mRNA-1;_AED=0.11;_eAED=0.11;_QI=672|1|1|1|0.75|0.55|9|347|719
chr1_2 exon 59472779 59473265 59472779 ID=Msa0081010-mRNA-1:exon:19233;Parent=Msa0081010-mRNA-1
chr1_2 exon 59473484 59473754 59473484 ID=Msa0081010-mRNA-1:exon:19234;Parent=Msa0081010-mRNA-1
chr1_2 exon 59473894 59475130 59473894 ID=Msa0081010-mRNA-1:exon:19235;Parent=Msa0081010-mRNA-1
chr1_2 exon 59475215 59475319 59475215 ID=Msa0081010-mRNA-1:exon:19236;Parent=Msa0081010-mRNA-1
chr1_2 exon 59475431 59475496 59475431 ID=Msa0081010-mRNA-1:exon:19237;Parent=Msa0081010-mRNA-1
chr1_2 exon 59475896 59475961 59475896 ID=Msa0081010-mRNA-1:exon:19238;Parent=Msa0081010-mRNA-1
chr1_2 exon 59476050 59476568 59476050 ID=Msa0081010-mRNA-1:exon:19239;Parent=Msa0081010-mRNA-1
chr1_2 exon 59476723 59476806 59476723 ID=Msa0081010-mRNA-1:exon:19240;Parent=Msa0081010-mRNA-1
chr1_2 exon 59476937 59477280 59476937 ID=Msa0081010-mRNA-1:exon:19241;Parent=Msa0081010-mRNA-1
chr1_2 five_prime_UTR 59472779 59473265 59472779 ID=Msa0081010-mRNA-1:five_prime_utr;Parent=Msa0081010-mRNA-1
chr1_2 five_prime_UTR 59473484 59473668 59473484 ID=Msa0081010-mRNA-1:five_prime_utr;Parent=Msa0081010-mRNA-1
chr1_2 CDS 59473669 59473754 59473669 ID=Msa0081010-mRNA-1:cds;Parent=Msa0081010-mRNA-1
chr1_2 CDS 59473894 59475130 59473894 ID=Msa0081010-mRNA-1:cds;Parent=Msa0081010-mRNA-1
chr1_2 CDS 59475215 59475319 59475215 ID=Msa0081010-mRNA-1:cds;Parent=Msa0081010-mRNA-1
chr1_2 CDS 59475431 59475496 59475431 ID=Msa0081010-mRNA-1:cds;Parent=Msa0081010-mRNA-1
chr1_2 CDS 59475896 59475961 59475896 ID=Msa0081010-mRNA-1:cds;Parent=Msa0081010-mRNA-1
chr1_2 CDS 59476050 59476568 59476050 ID=Msa0081010-mRNA-1:cds;Parent=Msa0081010-mRNA-1
chr1_2 CDS 59476723 59476803 59476723 ID=Msa0081010-mRNA-1:cds;Parent=Msa0081010-mRNA-1
chr1_2 three_prime_UTR 59476804 59476806 59476804 ID=Msa0081010-mRNA-1:three_prime_utr;Parent=Msa0081010-mRNA-1
chr1_2 three_prime_UTR 59476937 59477280 59476937 ID=Msa0081010-mRNA-1:three_prime_utr;Parent=Msa0081010-mRNA-1
Gene Sequence

>Msa0081010

ATGCCTCTTTATGAGTTATACCGTTTGGCTAGAGAGAAGCTTGATAATGAGACTAACGGCGCAAGTGTAGCGGATCAACCTTCGTCGCCTGAGAATGATTTTTTTGAGCTGGTTTGGGAGAGTGGTCAGATTTCAAGCCAAGGTCAATCAAGTAGAGGTAGAAAGAGTCCATCTTGTAGGAGTTTGCCATCTCACTGCTTACCATCTCATAGTCCTAGAGGTCGAGATAAAGACGTAGGAGGAGGATTTAGTAATAACAATCCAAAGATAGGAAAGTTTGGTGATTTAGACTCTGGATTGAATGAGATTCCAATGTCGGTGCCATCTCGCGAAGTAGATGAAATGATGCCTTGGTTGGATTATTCAATGGATGGCTCTTTGCAACACGAATATGGTTCTGATTTCTTTCATGAACTCACGGAGAACGACCTTCCTGCCTCGAATAGTTTTACTCTATTGGATAAAAGAAGTAATGGGAATCAGATATTTAGGGACTCTCATAAAAATTCTGCAGAACCGATGAATGTTTCTAAGGGTTCTTCAGCTGAACAGGTTGTTGAGACTGCAAGACATAAAGCTAGTGCCGGTCAGTTATATCCGCCATCATCGAATCAATGTCAAACAACATCTGTAACTGTTAGATCTAGGGCATCAGATATAACTGAAAATAATAATGTTAGCAGTGGTAACCAGGACGTGCCTTATGGGGATATTACTCGCATTCCATCTTCCTCGAGCGATTTTTCTAGCTTAAAAGCGCAGAAGCAAGATCCTATAATGCCTGGCAATGGTTCCAATGTAATGAATTTTTCCCATTTTGCAAGGCCTGCAGCTATTGTGAGAGCTAATCTTCAGAACATAGGCTTGAAGTCTGGTTTGAATTCAGCTTCAGCAAGATCAGATGTTATAGGAGTTAAGAATAAAGGCGCTGCTTCGACTAGCAGCAATCCTCCTGATTCAGCTCTTGTTAATCCAAGCGGTGAGTGTTCAAAGGAACCGGAAATGCGCTGTCATAAGGTGGTAGAGCCATCCAAGGCTGATTTGAAACCTTTGCAGCCGAAATTGCTTGAACCAAATGCTGTAGCTACTAAACAATCGAAGCCTGCTTGCAAAGAGAATGGAATTAAGAATGATCAACCTTCCATTCAAGTTCTTGGTGACAATGGCGCTAAAGGACACACAGCTGCTGAAAAAGGCATGGAGGTGGCAGTAGCCTCTTCTTCTGTTTGCTCTGGCAATGGTGCAGACAGAGGCTCGGATGATCCAAATCGAGATTTGAAACGGAAAAGTAGAGACACTGAGGACTCTGAATGCCATAGTGAAGATGTTGAGGATGAATCAGTGGGAGTTAAAAAGGGAGCGGCTGGACGAGGAGTTGCAGGTTCCAAAAGAAGCCGTGCTGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATAAATGAGAAGATGCGTGCATTGCAAGAACTCATACCTAATTGCAATAAGGTGGATAAAGCTTCTATGCTGGATGAGGCAATTGAGTATCTAAAAACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCTGGTTTATATATGCCTCAAATGATGTTACCTGCTGGAATGCAGCACATGCATGCACCACACATGGCCGCATTTTCACAGATGGGCATCGGCATGCATATGGGGTTAGGTATGGGTTATGGAATGGGAATGCCTGACATGAACGGCGGGCCGTCTAGATTTCCAATGATTCAAGTACCTCAGATGCAAGGAAATCATATGCCCGTTGCGCATATGCCTGGACCCTCTGCTATGCATGGAATGGCCAGATCGAATACTCAAGGGTTTGGACTTCCGGGACAGGGAATTTCCATGCCAATGCCGCATGGTCCGGCATTTCCTTTTTCAGGAGGGCCTCTTATGAACTCATCCGCTCCGGGTCCGTCTGTGTATGGATCCACAGGACATGTTGAAGCTGTGAATCCGGCTTCAGCGTGTGGCTCAAAAGATCGAAGGCCAGATGTGGACTCACAAATTAAGCAAAACACTGCTGGTCGTGACTCTACAAGCCAGATCCCTAACCAGTCAACTTTGGTGCATAATGGTGGCCATGCTTCAGTGGCTGATGACAGTGAAGCTGCTAATCCAGGCAATACAAATTTGTGA
Protein sequence

>Msa0081010

MPLYELYRLAREKLDNETNGASVADQPSSPENDFFELVWESGQISSQGQSSRGRKSPSCRSLPSHCLPSHSPRGRDKDVGGGFSNNNPKIGKFGDLDSGLNEIPMSVPSREVDEMMPWLDYSMDGSLQHEYGSDFFHELTENDLPASNSFTLLDKRSNGNQIFRDSHKNSAEPMNVSKGSSAEQVVETARHKASAGQLYPPSSNQCQTTSVTVRSRASDITENNNVSSGNQDVPYGDITRIPSSSSDFSSLKAQKQDPIMPGNGSNVMNFSHFARPAAIVRANLQNIGLKSGLNSASARSDVIGVKNKGAASTSSNPPDSALVNPSGECSKEPEMRCHKVVEPSKADLKPLQPKLLEPNAVATKQSKPACKENGIKNDQPSIQVLGDNGAKGHTAAEKGMEVAVASSSVCSGNGADRGSDDPNRDLKRKSRDTEDSECHSEDVEDESVGVKKGAAGRGVAGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMPQMMLPAGMQHMHAPHMAAFSQMGIGMHMGLGMGYGMGMPDMNGGPSRFPMIQVPQMQGNHMPVAHMPGPSAMHGMARSNTQGFGLPGQGISMPMPHGPAFPFSGGPLMNSSAPGPSVYGSTGHVEAVNPASACGSKDRRPDVDSQIKQNTAGRDSTSQIPNQSTLVHNGGHASVADDSEAANPGNTNL*