AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0132010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0132010 MtrunA17_Chr1g0193321 96.810 721 21 1 1 719 1 721 0.0 1437
Msa0132010 MtrunA17_Chr7g0271251 48.714 739 285 17 1 708 2 677 0.0 597
Msa0132010 MtrunA17_Chr1g0182791 61.333 150 54 2 395 544 254 399 1.57e-43 165
Msa0132010 MtrunA17_Chr7g0262691 55.000 160 53 5 396 542 185 338 6.61e-37 144
Msa0132010 MtrunA17_Chr3g0095391 61.654 133 39 5 425 557 276 396 1.22e-36 144
Msa0132010 MtrunA17_Chr7g0270871 50.314 159 71 3 407 561 152 306 1.21e-33 133
Msa0132010 MtrunA17_Chr5g0402031 50.336 149 60 2 402 549 59 194 7.55e-28 115
Msa0132010 MtrunA17_Chr1g0153241 65.882 85 29 0 454 538 79 163 1.79e-27 112
Msa0132010 MtrunA17_Chr7g0231461 55.435 92 40 1 432 522 268 359 6.51e-23 102
Msa0132010 MtrunA17_Chr4g0074161 55.405 74 29 1 462 531 208 281 9.76e-19 89.4
Msa0132010 MtrunA17_Chr1g0190731 52.857 70 29 1 462 527 195 264 1.39e-16 82.0
Msa0132010 MtrunA17_Chr1g0152131 47.945 73 37 1 462 533 262 334 1.63e-15 79.7
Msa0132010 MtrunA17_Chr5g0393721 35.294 119 61 3 444 561 207 310 2.27e-15 78.2
Msa0132010 MtrunA17_Chr8g0363921 50.000 64 31 1 462 524 153 216 1.42e-14 74.7
Msa0132010 MtrunA17_Chr3g0144641 45.205 73 39 1 462 533 193 265 2.31e-14 75.9
Msa0132010 MtrunA17_Chr8g0365941 42.105 95 47 3 462 548 307 401 3.88e-14 75.5
Msa0132010 MtrunA17_Chr5g0421111 46.575 73 38 1 462 533 367 439 4.28e-14 75.9
Msa0132010 MtrunA17_Chr1g0207311 36.538 104 46 3 463 561 194 282 4.94e-14 73.2
Msa0132010 MtrunA17_Chr7g0234761 51.562 64 30 1 462 524 319 382 5.07e-14 75.5
Msa0132010 MtrunA17_Chr5g0415291 38.583 127 63 5 409 524 55 177 5.10e-14 72.4
Msa0132010 MtrunA17_Chr4g0035101 45.205 73 39 1 462 533 145 217 5.75e-14 73.9
Msa0132010 MtrunA17_Chr8g0339091 51.562 64 30 1 462 524 293 356 7.77e-14 74.7
Msa0132010 MtrunA17_Chr3g0131771 50.000 64 31 1 462 524 149 212 2.90e-13 71.6
Msa0132010 MtrunA17_Chr3g0134741 36.275 102 50 3 458 559 227 313 4.40e-13 70.9
Msa0132010 MtrunA17_Chr8g0385911 40.000 80 47 1 449 527 134 213 8.34e-13 70.1
Msa0132010 MtrunA17_Chr1g0207301 36.047 86 40 2 476 561 304 374 2.19e-12 69.3
Msa0132010 MtrunA17_Chr7g0258161 43.056 72 40 1 463 533 176 247 2.72e-12 68.9
Msa0132010 MtrunA17_Chr1g0152651 45.455 66 36 0 458 523 272 337 3.13e-12 68.9
Msa0132010 MtrunA17_Chr1g0174161 41.429 70 40 1 463 531 163 232 1.62e-11 66.2
Msa0132010 MtrunA17_Chr1g0184841 50.000 74 33 1 462 531 122 195 6.81e-11 63.9
Msa0132010 MtrunA17_Chr6g0484271 45.312 64 34 1 462 524 157 220 7.07e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0132010 AT1G09530.3 35.703 619 221 24 1 595 1 466 1.58e-71 242
Msa0132010 AT1G09530.2 35.703 619 221 24 1 595 1 466 1.58e-71 242
Msa0132010 AT1G09530.5 35.703 619 221 24 1 595 1 466 1.58e-71 242
Msa0132010 AT1G09530.1 35.703 619 221 24 1 595 1 466 1.58e-71 242
Msa0132010 AT1G09530.4 35.703 619 221 24 1 595 1 466 1.58e-71 242
Msa0132010 AT1G09530.6 35.703 619 221 24 1 595 1 466 1.58e-71 242
Msa0132010 AT2G46970.2 46.193 197 78 7 395 576 127 310 1.40e-34 136
Msa0132010 AT2G20180.7 47.458 177 72 5 399 572 153 311 1.48e-34 137
Msa0132010 AT2G20180.1 47.458 177 72 5 399 572 153 311 1.48e-34 137
Msa0132010 AT2G20180.5 47.458 177 72 5 399 572 153 311 1.48e-34 137
Msa0132010 AT2G46970.1 46.193 197 78 7 395 576 158 341 2.00e-34 136
Msa0132010 AT2G46970.3 46.193 197 78 7 395 576 136 319 2.87e-34 135
Msa0132010 AT2G20180.4 47.458 177 72 5 399 572 224 382 6.78e-34 136
Msa0132010 AT2G20180.6 47.458 177 72 5 399 572 224 382 6.78e-34 136
Msa0132010 AT2G20180.2 47.458 177 72 5 399 572 224 382 6.78e-34 136
Msa0132010 AT2G20180.3 47.458 177 72 5 399 572 224 382 6.78e-34 136
Msa0132010 AT2G20180.8 52.381 126 47 3 399 521 224 339 2.25e-29 120
Msa0132010 AT4G28800.1 43.827 162 67 5 392 548 193 335 1.87e-27 116
Msa0132010 AT4G28790.1 43.709 151 65 4 421 564 244 381 1.04e-26 114
Msa0132010 AT4G36930.1 58.772 114 41 2 432 541 161 272 1.41e-26 112
Msa0132010 AT4G00050.2 59.140 93 34 2 432 523 79 168 2.87e-26 110
Msa0132010 AT4G00050.3 59.140 93 34 2 432 523 181 270 1.24e-25 110
Msa0132010 AT4G00050.1 59.140 93 34 2 432 523 181 270 1.44e-25 110
Msa0132010 AT5G67110.1 54.639 97 44 0 440 536 67 163 1.86e-24 102
Msa0132010 AT3G59060.1 47.552 143 60 3 425 555 212 351 3.14e-23 103
Msa0132010 AT3G59060.3 47.552 143 60 3 425 555 212 351 3.57e-23 103
Msa0132010 AT3G59060.2 47.552 143 60 3 425 555 212 351 3.57e-23 103
Msa0132010 AT3G59060.4 47.552 143 60 3 425 555 212 351 3.57e-23 103
Msa0132010 AT4G28800.2 41.358 162 65 6 392 548 205 341 5.34e-23 103
Msa0132010 AT3G62090.1 46.341 123 48 2 460 573 165 278 5.57e-23 101
Msa0132010 AT3G62090.2 46.341 123 48 2 460 573 182 295 1.08e-22 100
Msa0132010 AT4G28815.2 52.222 90 40 2 456 542 64 153 3.26e-22 96.7
Msa0132010 AT4G28815.1 48.958 96 46 2 450 542 134 229 1.90e-21 96.3
Msa0132010 AT2G43010.2 66.667 81 24 1 445 522 233 313 1.12e-20 95.9
Msa0132010 AT2G43010.1 66.667 81 24 1 445 522 233 313 1.20e-20 95.9
Msa0132010 AT2G43010.4 66.667 81 24 1 445 522 233 313 1.31e-20 95.5
Msa0132010 AT2G43010.3 66.667 81 24 1 445 522 240 320 1.39e-20 95.9
Msa0132010 AT2G43010.5 66.667 81 24 1 445 522 275 355 2.18e-20 95.5
Msa0132010 AT4G28790.2 48.000 100 40 2 421 520 244 331 8.27e-20 92.0
Msa0132010 AT2G24260.2 60.317 63 25 0 462 524 37 99 1.74e-19 89.0
Msa0132010 AT5G58010.1 53.947 76 31 1 462 533 101 176 3.56e-19 89.4
Msa0132010 AT2G24260.1 60.317 63 25 0 462 524 140 202 7.20e-19 89.4
Msa0132010 AT4G30980.1 58.730 63 26 0 462 524 132 194 1.33e-18 87.8
Msa0132010 AT5G61270.2 48.246 114 48 3 423 536 45 147 2.99e-18 86.3
Msa0132010 AT5G61270.3 48.246 114 48 3 423 536 45 147 2.99e-18 86.3
Msa0132010 AT4G30980.2 58.730 63 26 0 462 524 180 242 3.32e-18 87.4
Msa0132010 AT5G61270.1 48.246 114 48 3 423 536 133 235 5.49e-18 87.0
Msa0132010 AT4G28811.1 41.916 167 72 5 392 545 292 446 9.51e-17 84.7
Msa0132010 AT1G68920.1 31.795 195 103 6 357 533 195 377 2.52e-15 79.7
Msa0132010 AT1G68920.4 31.795 195 103 6 357 533 195 377 2.52e-15 79.7
Msa0132010 AT1G68920.2 31.795 195 103 6 357 533 195 377 2.52e-15 79.7
Msa0132010 AT1G68920.3 49.315 73 36 1 462 533 304 376 2.82e-15 79.7
Msa0132010 AT5G50915.3 53.125 64 29 1 462 524 138 201 3.60e-15 76.6
Msa0132010 AT5G50915.4 53.125 64 29 1 462 524 138 201 3.60e-15 76.6
Msa0132010 AT1G10120.2 47.945 73 37 1 462 533 208 280 4.40e-15 78.2
Msa0132010 AT1G10120.1 47.945 73 37 1 462 533 208 280 4.40e-15 78.2
Msa0132010 AT5G50915.1 53.125 64 29 1 462 524 138 201 5.24e-15 76.6
Msa0132010 AT5G50915.2 53.125 64 29 1 462 524 138 201 5.24e-15 76.6
Msa0132010 AT1G02340.2 47.727 88 44 2 474 559 134 221 9.20e-15 75.9
Msa0132010 AT1G02340.1 47.727 88 44 2 474 559 141 228 1.01e-14 75.9
Msa0132010 AT2G18300.1 45.333 75 40 1 462 535 187 261 2.00e-14 75.9
Msa0132010 AT2G18300.2 45.333 75 40 1 462 535 187 261 2.15e-14 75.5
Msa0132010 AT3G23690.1 44.156 77 42 1 462 537 193 269 2.28e-14 75.9
Msa0132010 AT4G36540.2 45.205 73 39 1 462 533 143 215 2.76e-14 74.7
Msa0132010 AT4G36540.1 45.205 73 39 1 462 533 143 215 2.78e-14 74.7
Msa0132010 AT2G18300.3 44.156 77 42 1 462 537 187 263 2.80e-14 75.5
Msa0132010 AT5G62610.2 51.562 64 30 1 462 524 155 218 4.07e-14 73.9
Msa0132010 AT5G62610.1 51.562 64 30 1 462 524 155 218 4.07e-14 73.9
Msa0132010 AT1G59640.1 50.000 64 31 1 462 524 138 201 5.35e-14 73.2
Msa0132010 AT2G14760.1 38.462 104 49 3 458 561 235 323 5.63e-14 74.3
Msa0132010 AT3G07340.2 51.562 64 30 1 462 524 260 323 6.30e-14 75.1
Msa0132010 AT2G14760.3 37.931 116 51 4 452 561 236 336 6.93e-14 73.9
Msa0132010 AT3G07340.1 51.562 64 30 1 462 524 260 323 7.48e-14 75.1
Msa0132010 AT5G48560.2 51.562 64 30 1 462 524 303 366 1.00e-13 74.7
Msa0132010 AT5G48560.1 51.562 64 30 1 462 524 303 366 1.15e-13 74.7
Msa0132010 AT4G33880.1 40.000 100 45 3 458 557 264 348 1.26e-13 73.6
Msa0132010 AT4G34530.1 41.667 72 41 1 462 532 174 245 1.75e-13 72.8
Msa0132010 AT5G43175.1 41.250 80 39 2 451 530 130 201 2.74e-13 70.5
Msa0132010 AT1G26260.3 48.438 64 32 1 462 524 174 237 2.78e-13 72.4
Msa0132010 AT1G26260.5 48.438 64 32 1 462 524 203 266 2.83e-13 72.4
Msa0132010 AT2G42300.4 43.836 73 40 1 462 533 187 259 3.00e-13 71.2
Msa0132010 AT1G26260.4 48.438 64 32 1 462 524 225 288 3.46e-13 72.4
Msa0132010 AT1G26260.1 48.438 64 32 1 462 524 225 288 3.46e-13 72.4
Msa0132010 AT1G26260.6 48.438 64 32 1 462 524 225 288 3.46e-13 72.4
Msa0132010 AT1G26260.2 48.438 64 32 1 462 524 225 288 3.46e-13 72.4
Msa0132010 AT1G59640.2 50.000 64 31 1 462 524 138 201 3.62e-13 72.0
Msa0132010 AT2G42300.1 43.836 73 40 1 462 533 187 259 5.41e-13 71.2
Msa0132010 AT1G27740.1 36.066 122 58 5 440 561 152 253 5.45e-13 70.1
Msa0132010 AT3G57800.2 42.466 73 41 1 462 533 206 278 1.74e-12 70.1
Msa0132010 AT1G18400.2 46.875 64 33 1 462 524 147 210 2.25e-12 68.2
Msa0132010 AT1G18400.1 46.875 64 33 1 462 524 147 210 2.61e-12 68.2
Msa0132010 AT1G25330.1 45.312 64 34 1 462 524 106 169 4.03e-12 67.0
Msa0132010 AT1G73830.2 43.750 64 35 1 462 524 149 212 1.07e-11 66.2
Msa0132010 AT1G73830.1 43.750 64 35 1 462 524 149 212 1.21e-11 66.2

Find 235 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGAAAATTGCACAGATTT+TGG 0.143105 1_3:-62948317 Msa0132010:three_prime_UTR
AATGCAATATTTAAGAAGTT+TGG 0.188590 1_3:+62952512 None:intergenic
GTAATGGGAATCAGATATTT+AGG 0.194680 1_3:-62951151 Msa0132010:CDS
CGCCGCCTTCTTCGTCCATT+TGG 0.199275 1_3:-62952542 Msa0132010:five_prime_UTR
CTTTGTCTTCAAACTTCATT+TGG 0.201765 1_3:-62951915 Msa0132010:five_prime_UTR
GATCTTTCATAGTGATTCTT+TGG 0.204839 1_3:-62948197 Msa0132010:three_prime_UTR
CAACCTTCCATTCAAGTTCT+TGG 0.207186 1_3:-62950486 Msa0132010:CDS
TCACCAAACTTTCCTATCTT+TGG 0.207484 1_3:+62951359 None:intergenic
TGAATCAGTGGGAGTTAAAA+AGG 0.229978 1_3:-62950202 Msa0132010:CDS
CTAAACCATGGTTAATGTTT+TGG 0.237543 1_3:+62952652 None:intergenic
TACTCAAGGGTTTGGACTTC+CGG 0.238298 1_3:-62949110 Msa0132010:CDS
GGACACACAGCTGCTGAAAA+AGG 0.246020 1_3:-62950447 Msa0132010:CDS
TTCATTGATAAAGACTCTTT+TGG 0.253520 1_3:-62952067 Msa0132010:five_prime_UTR
TTCAGCAGCACGGCTTCTTT+TGG 0.263273 1_3:+62950152 None:intergenic
TAGCTGCAGGCCTTGCAAAA+TGG 0.265088 1_3:+62950808 None:intergenic
GAACCATTGCCAGGCATTAT+AGG 0.273673 1_3:+62950849 None:intergenic
AAAGATGAGAAACGACATTT+TGG 0.278685 1_3:+62948429 None:intergenic
GGCTCTTTGCAACACGAATA+TGG 0.299730 1_3:-62951248 Msa0132010:CDS
AAATATCCTCTTCAGTAATC+TGG 0.302622 1_3:+62948395 None:intergenic
ACCTTATGACAGCGCATTTC+CGG 0.308325 1_3:+62950624 None:intergenic
AAACTAACCTTATTGCAATT+AGG 0.311300 1_3:+62949946 None:intergenic
ATGCAATATTTAAGAAGTTT+GGG 0.315431 1_3:+62952513 None:intergenic
GCATTTGGTTCAAGCAATTT+CGG 0.321748 1_3:+62950564 None:intergenic
ATTATTAACTTACTTCACTA+TGG 0.325057 1_3:+62950307 None:intergenic
AGAACCGATGAATGTTTCTA+AGG 0.325663 1_3:-62951108 Msa0132010:CDS
TTCCGTTTCAAATCTCGATT+TGG 0.325821 1_3:+62950357 None:intergenic
CATCTGTAACTGTTAGATCT+AGG 0.327984 1_3:-62950995 Msa0132010:CDS
GGTAACCAGGACGTGCCTTA+TGG 0.332319 1_3:-62950936 Msa0132010:CDS
AGCTGCAGGCCTTGCAAAAT+GGG 0.334857 1_3:+62950809 None:intergenic
AGGGATAAACAGACCTGGTT+AGG 0.337445 1_3:+62948869 None:intergenic
GCCGCCTTCTTCGTCCATTT+GGG 0.347498 1_3:-62952541 Msa0132010:five_prime_UTR
ATAAGAGGCCCTCCTGAAAA+AGG 0.349955 1_3:+62949046 None:intergenic
ACTCAAGGGTTTGGACTTCC+GGG 0.350946 1_3:-62949109 Msa0132010:CDS
AATGCTAATACTAAGAGCTT+TGG 0.360151 1_3:-62951848 Msa0132010:five_prime_UTR
AATCCAAAGATAGGAAAGTT+TGG 0.360484 1_3:-62951362 Msa0132010:CDS
GATAACTTCTGAGTTGCATT+TGG 0.361157 1_3:-62952455 Msa0132010:five_prime_UTR
TAAGGGTTCTTCAGCTGAAC+AGG 0.362772 1_3:-62951090 Msa0132010:CDS
CACTATGAAAGATCTGAATA+AGG 0.369825 1_3:+62948206 None:intergenic
CAGTGACACACGCACACAAC+TGG 0.374364 1_3:+62952596 None:intergenic
GCCTCTTCTTCTGTTTGCTC+TGG 0.374903 1_3:-62950408 Msa0132010:CDS
AGAATCAGTGTCACTGTATT+CGG 0.376615 1_3:-62952301 Msa0132010:five_prime_UTR
AGTAATAACAATCCAAAGAT+AGG 0.377772 1_3:-62951371 Msa0132010:CDS
TCTTTATGAGTTATACCGTT+TGG 0.379797 1_3:-62951754 Msa0132010:CDS
AATCACAAATTTGTATTGCC+TGG 0.381522 1_3:+62948646 None:intergenic
ATGGGGTTAGGTATGGGTTA+TGG 0.384832 1_3:-62949265 Msa0132010:CDS
ATCTGAGGTACTTGAATCAT+TGG 0.390961 1_3:+62949202 None:intergenic
GTAACCAGGACGTGCCTTAT+GGG 0.391349 1_3:-62950935 Msa0132010:CDS
CATGCCAATGCCGCATGGTC+CGG 0.391369 1_3:-62949074 Msa0132010:CDS
CATGCATATGGGGTTAGGTA+TGG 0.391760 1_3:-62949272 Msa0132010:CDS
TTAATTTGTGAGTCCACATC+TGG 0.393466 1_3:+62948929 None:intergenic
ACTCATACCTAATTGCAATA+AGG 0.396247 1_3:-62949953 Msa0132010:intron
GATGGGCATCGGCATGCATA+TGG 0.396774 1_3:-62949284 Msa0132010:CDS
TGTTTAGTAGCTACAGCATT+TGG 0.397325 1_3:+62950549 None:intergenic
GTTATAGGAGTTAAGAATAA+AGG 0.400952 1_3:-62950717 Msa0132010:CDS
GCGGCTGGACGAGGAGTTGC+AGG 0.404515 1_3:-62950177 Msa0132010:CDS
AGGCAATACAAATTTGTGAT+TGG 0.410430 1_3:-62948644 Msa0132010:intron
TCCTTTGAACACTCACCGCT+TGG 0.414948 1_3:+62950648 None:intergenic
CAGTCAACTTTGGTGCATAA+TGG 0.417435 1_3:-62948709 Msa0132010:CDS
AGATCGAATACTCAAGGGTT+TGG 0.418683 1_3:-62949118 Msa0132010:CDS
TCAGCAAGATCAGATGTTAT+AGG 0.425064 1_3:-62950732 Msa0132010:CDS
AACAGACCTGGTTAGGGATC+TGG 0.426475 1_3:+62948876 None:intergenic
GAATGATATTTACTTGAACT+TGG 0.428430 1_3:+62949477 None:intergenic
CGGTGAGTGTTCAAAGGAAC+CGG 0.431291 1_3:-62950643 Msa0132010:CDS
TACCTCTACTTGATTGACCT+TGG 0.431493 1_3:+62951483 None:intergenic
GCTCCGGGTCCGTCTGTGTA+TGG 0.432008 1_3:-62949013 Msa0132010:CDS
TCTTCTGTTTGCTCTGGCAA+TGG 0.432421 1_3:-62950402 Msa0132010:CDS
TTTGAGCTGGTTTGGGAGAG+TGG 0.433011 1_3:-62951518 Msa0132010:CDS
GGTCCAGGCATATGCGCAAC+GGG 0.433702 1_3:+62949163 None:intergenic
CTTCATTTGGATTCCAAAGG+TGG 0.435654 1_3:-62951902 Msa0132010:five_prime_UTR
AGGGTTTGGACTTCCGGGAC+AGG 0.436904 1_3:-62949104 Msa0132010:CDS
AATGCCGGACCATGCGGCAT+TGG 0.437560 1_3:+62949070 None:intergenic
GACGGCCCGCCGTTCATGTC+AGG 0.437600 1_3:+62949232 None:intergenic
CAGAACATAGGCTTGAAGTC+TGG 0.440984 1_3:-62950768 Msa0132010:CDS
CTGATTCTCGGCTGAGATCA+AGG 0.445045 1_3:+62952316 None:intergenic
TCGCGAGATGGCACCGACAT+TGG 0.449982 1_3:+62951311 None:intergenic
ATTGCTTCCAACATATTCTT+CGG 0.452650 1_3:+62951868 None:intergenic
CTTGGTGACAATGGCGCTAA+AGG 0.455067 1_3:-62950468 Msa0132010:CDS
ATGCCCGTTGCGCATATGCC+TGG 0.457121 1_3:-62949166 Msa0132010:CDS
ACCGGAAATGCGCTGTCATA+AGG 0.458097 1_3:-62950625 Msa0132010:CDS
TCGTGGCTAGTAGAAGAATC+AGG 0.460029 1_3:-62948468 Msa0132010:three_prime_UTR
GGATTAACAAGAGCTGAATC+AGG 0.461722 1_3:+62950669 None:intergenic
TTAGGTATGGGTTATGGAAT+GGG 0.462375 1_3:-62949259 Msa0132010:CDS
AAGTTTGGTGATTTAGACTC+TGG 0.465005 1_3:-62951347 Msa0132010:CDS
AATACAGTGACACTGATTCT+CGG 0.465480 1_3:+62952304 None:intergenic
ATTACATTGGAACCATTGCC+AGG 0.465626 1_3:+62950840 None:intergenic
TGGATTTAAACAGTCAACTT+TGG 0.465882 1_3:-62948719 Msa0132010:intron
TATTGGATAAAAGAAGTAAT+GGG 0.466226 1_3:-62951166 Msa0132010:CDS
ATGGGCATCGGCATGCATAT+GGG 0.467830 1_3:-62949283 Msa0132010:CDS
GTAGAAAGAGTCCATCTTGT+AGG 0.469763 1_3:-62951463 Msa0132010:CDS
ACATGTTGAAGCTGTGAATC+CGG 0.471250 1_3:-62948981 Msa0132010:CDS
GCCTTGGTTGGATTATTCAA+TGG 0.473067 1_3:-62951273 Msa0132010:CDS
ATTCCATTCTCTTTGCAAGC+AGG 0.474924 1_3:+62950519 None:intergenic
TAATGGGAATCAGATATTTA+GGG 0.478431 1_3:-62951150 Msa0132010:CDS
TCTTATGAACTCATCCGCTC+CGG 0.478517 1_3:-62949029 Msa0132010:CDS
TGGTTGGATTATTCAATGGA+TGG 0.481215 1_3:-62951269 Msa0132010:CDS
CAAAGGTTTCAAATCAGCCT+TGG 0.482518 1_3:+62950590 None:intergenic
CCAGCAGGTAACATCATTTG+AGG 0.491436 1_3:+62949349 None:intergenic
GACAGTGAAGCTGCTAATCC+AGG 0.492549 1_3:-62948664 Msa0132010:CDS
AAACTTCATTTGGATTCCAA+AGG 0.498356 1_3:-62951905 Msa0132010:five_prime_UTR
ATGCATATGGGGTTAGGTAT+GGG 0.501740 1_3:-62949271 Msa0132010:CDS
ATTGTCACCAAGAACTTGAA+TGG 0.502299 1_3:+62950479 None:intergenic
ATCCAAATCGAGATTTGAAA+CGG 0.502394 1_3:-62950359 Msa0132010:CDS
TTTGAGCCACACGCTGAAGC+CGG 0.503540 1_3:+62948962 None:intergenic
CTATTGGATAAAAGAAGTAA+TGG 0.505191 1_3:-62951167 Msa0132010:CDS
ATCTCACTCATAGTTTATTG+TGG 0.506699 1_3:-62951957 Msa0132010:five_prime_UTR
CAAATTAAGCAAAACACTGC+TGG 0.508355 1_3:-62948914 Msa0132010:CDS
AGTTTATTGTGGCTTACGAC+GGG 0.508407 1_3:-62951946 Msa0132010:five_prime_UTR
AAGCCTGCTTGCAAAGAGAA+TGG 0.512967 1_3:-62950522 Msa0132010:CDS
GTTTGACATTGATTCGATGA+TGG 0.513871 1_3:+62951020 None:intergenic
ATCGGCATGCATATGGGGTT+AGG 0.513942 1_3:-62949277 Msa0132010:CDS
CAATAGAGTAAAACTATTCG+AGG 0.514401 1_3:+62951184 None:intergenic
CTTATGAACTCATCCGCTCC+GGG 0.516950 1_3:-62949028 Msa0132010:CDS
CCTCAAATGATGTTACCTGC+TGG 0.519335 1_3:-62949349 Msa0132010:CDS
ATCTGTAACTGTTAGATCTA+GGG 0.521505 1_3:-62950994 Msa0132010:CDS
GGTGGATAAAGCTTCTATGC+TGG 0.522318 1_3:-62949534 Msa0132010:CDS
TCAAGCAATTTCGGCTGCAA+AGG 0.523909 1_3:+62950573 None:intergenic
TGATTTCTTTCATGAACTCA+CGG 0.530210 1_3:-62951222 Msa0132010:CDS
AAACGGTATAACTCATAAAG+AGG 0.530629 1_3:+62951756 None:intergenic
GGAGCGGATGAGTTCATAAG+AGG 0.531123 1_3:+62949031 None:intergenic
GGCATGGAAATTCCCTGTCC+CGG 0.531882 1_3:+62949091 None:intergenic
GGGTTTGGACTTCCGGGACA+GGG 0.531895 1_3:-62949103 Msa0132010:CDS
TCTTACGCAGATGATGTCAA+TGG 0.532008 1_3:-62949389 Msa0132010:intron
TCACCAAGAACTTGAATGGA+AGG 0.535249 1_3:+62950483 None:intergenic
GGGATAAACAGACCTGGTTA+GGG 0.536075 1_3:+62948870 None:intergenic
GTTAGGTATGGGTTATGGAA+TGG 0.536992 1_3:-62949260 Msa0132010:CDS
GCCAGAGCAAACAGAAGAAG+AGG 0.539271 1_3:+62950407 None:intergenic
AAGCAAGATCCTATAATGCC+TGG 0.540589 1_3:-62950858 Msa0132010:CDS
TGCATGTGCTGCATTCCAGC+AGG 0.541526 1_3:+62949334 None:intergenic
GTATACAGAGGCGAAGAGAC+AGG 0.541533 1_3:-62950005 Msa0132010:intron
TTAGCTCTCACAATAGCTGC+AGG 0.542020 1_3:+62950795 None:intergenic
AGAGTAAAACTATTCGAGGC+AGG 0.545061 1_3:+62951188 None:intergenic
GTGAATCCGGCTTCAGCGTG+TGG 0.545306 1_3:-62948968 Msa0132010:CDS
AGATGAAATGATGCCTTGGT+TGG 0.547275 1_3:-62951285 Msa0132010:CDS
ACTTTAATTGAAGGATGTTG+AGG 0.547453 1_3:-62950226 Msa0132010:intron
CCGTCTGTGTATGGATCCAC+AGG 0.548020 1_3:-62949004 Msa0132010:CDS
GGTTTCAAATCAGCCTTGGA+TGG 0.548035 1_3:+62950594 None:intergenic
ACGTCTTTATCTCGACCTCT+AGG 0.548572 1_3:+62951407 None:intergenic
TATCCCCATAAGGCACGTCC+TGG 0.548638 1_3:+62950931 None:intergenic
TAATGTTAGCAGTGGTAACC+AGG 0.548677 1_3:-62950949 Msa0132010:CDS
AAACCCTTGAGTATTCGATC+TGG 0.548724 1_3:+62949120 None:intergenic
AGTGCATAATCTATCTGAAA+GGG 0.548993 1_3:-62950130 Msa0132010:intron
AAGGTTTCTATTCTAAACCA+TGG 0.549756 1_3:+62952640 None:intergenic
GATAACACCGAAGAATATGT+TGG 0.549773 1_3:-62951875 Msa0132010:five_prime_UTR
AAGTTTGGGAATGACCCAAA+TGG 0.550042 1_3:+62952527 None:intergenic
GCACATGCATGCACCACACA+TGG 0.551028 1_3:-62949320 Msa0132010:CDS
GACTAACGGCGCAAGTGTAG+CGG 0.551051 1_3:-62951709 Msa0132010:CDS
CGGACCATGCGGCATTGGCA+TGG 0.552943 1_3:+62949075 None:intergenic
CCTGGACCCTCTGCTATGCA+TGG 0.553478 1_3:-62949148 Msa0132010:CDS
GAATGCCTGACATGAACGGC+GGG 0.554517 1_3:-62949237 Msa0132010:CDS
CGAGATAAAGACGTAGGAGG+AGG 0.554717 1_3:-62951398 Msa0132010:CDS
ATTCAAGTTCTTGGTGACAA+TGG 0.555532 1_3:-62950477 Msa0132010:CDS
CTTACGCAGATGATGTCAAT+GGG 0.556698 1_3:-62949388 Msa0132010:intron
ATTTCATCTACTTCGCGAGA+TGG 0.557156 1_3:+62951299 None:intergenic
ATGCGAGTAATATCCCCATA+AGG 0.560313 1_3:+62950921 None:intergenic
TTCAAACCAGATTACTGAAG+AGG 0.561206 1_3:-62948401 Msa0132010:three_prime_UTR
CAAGCTTCTCTCTAGCCAAA+CGG 0.561344 1_3:+62951739 None:intergenic
GAACCGATGAATGTTTCTAA+GGG 0.563235 1_3:-62951107 Msa0132010:CDS
AGATTATTCACACAACAAGA+AGG 0.563365 1_3:+62952419 None:intergenic
AGAGCTAATCTTCAGAACAT+AGG 0.563549 1_3:-62950780 Msa0132010:CDS
TAATGGTGGCCATGCTTCAG+TGG 0.563671 1_3:-62948692 Msa0132010:CDS
TAAAGCTTCTATGCTGGATG+AGG 0.564004 1_3:-62949528 Msa0132010:CDS
TACAAGCCAGATCCCTAACC+AGG 0.569454 1_3:-62948882 Msa0132010:intron
CAGATGATGTCAATGGGAGC+TGG 0.570696 1_3:-62949382 Msa0132010:CDS
TTTACCTGTCAAAATAGCCA+TGG 0.570700 1_3:-62948358 Msa0132010:three_prime_UTR
GGGTCCAGGCATATGCGCAA+CGG 0.570830 1_3:+62949162 None:intergenic
ATATGATTTCCTTGCATCTG+AGG 0.571553 1_3:+62949187 None:intergenic
CCATGCATAGCAGAGGGTCC+AGG 0.572604 1_3:+62949148 None:intergenic
GTGTGCGTGTGTCACTGCAT+TGG 0.574052 1_3:-62952590 Msa0132010:five_prime_UTR
TTCGGAGACTAGAATTCCCA+TGG 0.575489 1_3:+62948341 None:intergenic
CTTAACCAAAACATTAACCA+TGG 0.575886 1_3:-62952657 Msa0132010:five_prime_UTR
GTCACTTACTTTACTTGACA+AGG 0.577238 1_3:-62952204 Msa0132010:five_prime_UTR
ATGGCCAGATCGAATACTCA+AGG 0.580647 1_3:-62949124 Msa0132010:CDS
TCCAAGCGGTGAGTGTTCAA+AGG 0.581477 1_3:-62950649 Msa0132010:CDS
TAGTTTATTGTGGCTTACGA+CGG 0.581545 1_3:-62951947 Msa0132010:five_prime_UTR
GAAAATAATAATGTTAGCAG+TGG 0.582796 1_3:-62950957 Msa0132010:CDS
ACCCTCTGCTATGCATGGAA+TGG 0.583329 1_3:-62949143 Msa0132010:CDS
ATGACCCAAATGGACGAAGA+AGG 0.585238 1_3:+62952537 None:intergenic
GCACTAATCAGCATATAAGT+CGG 0.586456 1_3:+62952263 None:intergenic
TGGGCATCGGCATGCATATG+GGG 0.587722 1_3:-62949282 Msa0132010:CDS
AAAAGATCGAAGGCCAGATG+TGG 0.594060 1_3:-62948942 Msa0132010:CDS
GATCCTATAATGCCTGGCAA+TGG 0.595775 1_3:-62950852 Msa0132010:CDS
AAGTGCATAATCTATCTGAA+AGG 0.598272 1_3:-62950131 Msa0132010:CDS
GCAAGACATAAAGCTAGTGC+CGG 0.602436 1_3:-62951056 Msa0132010:CDS
GATTATGCACTTCAGCAGCA+CGG 0.604449 1_3:+62950142 None:intergenic
CAATGGTGCAGACAGAGGCT+CGG 0.605241 1_3:-62950385 Msa0132010:CDS
TGAGATGGTAAGCAGTGAGA+TGG 0.605275 1_3:+62951434 None:intergenic
CACAGCTTCAACATGTCCTG+TGG 0.605340 1_3:+62948988 None:intergenic
GCCATTCCATGCATAGCAGA+GGG 0.607653 1_3:+62949142 None:intergenic
AGCCAAGGTCAATCAAGTAG+AGG 0.608356 1_3:-62951485 Msa0132010:CDS
GATCCATACACAGACGGACC+CGG 0.610764 1_3:+62949010 None:intergenic
GATGGCAAACTCCTACAAGA+TGG 0.610890 1_3:+62951452 None:intergenic
TCTGGCAATGGTGCAGACAG+AGG 0.613703 1_3:-62950390 Msa0132010:CDS
TAACCAGGACGTGCCTTATG+GGG 0.616802 1_3:-62950934 Msa0132010:CDS
TGTTAATGAACTTACGACGA+AGG 0.616840 1_3:+62951681 None:intergenic
AGTGACACACGCACACAACT+GGG 0.616845 1_3:+62952597 None:intergenic
ATTTCCATGCCAATGCCGCA+TGG 0.619250 1_3:-62949079 Msa0132010:CDS
TGTCATCAGCCACTGAAGCA+TGG 0.619461 1_3:+62948683 None:intergenic
TTACCTGTCAAAATAGCCAT+GGG 0.619641 1_3:-62948357 Msa0132010:three_prime_UTR
ATTCAAGTACCTCAGATGCA+AGG 0.620716 1_3:-62949196 Msa0132010:CDS
GAACCCTTAGAAACATTCAT+CGG 0.621432 1_3:+62951104 None:intergenic
TAAAACTATTCGAGGCAGGA+AGG 0.623215 1_3:+62951192 None:intergenic
GGCCATTCCATGCATAGCAG+AGG 0.624817 1_3:+62949141 None:intergenic
GATGTTGAGGATGAATCAGT+GGG 0.625050 1_3:-62950213 Msa0132010:CDS
TCAGCTCTTGTTAATCCAAG+CGG 0.627460 1_3:-62950663 Msa0132010:CDS
TGATGGCGGATATAACTGAC+CGG 0.631000 1_3:+62951037 None:intergenic
GGTCGAGATAAAGACGTAGG+AGG 0.631029 1_3:-62951401 Msa0132010:CDS
TGAATCATTGGAAATCTAGA+CGG 0.631570 1_3:+62949214 None:intergenic
ATCAGTGTCACTGTATTCGG+AGG 0.632909 1_3:-62952298 Msa0132010:five_prime_UTR
AAGCTTGATAATGAGACTAA+CGG 0.634639 1_3:-62951723 Msa0132010:CDS
CGTGTGGCTCAAAAGATCGA+AGG 0.637154 1_3:-62948952 Msa0132010:CDS
ATAATGTTAAGATATATAAG+TGG 0.640008 1_3:+62948264 None:intergenic
TCAACTTTGGTGCATAATGG+TGG 0.640234 1_3:-62948706 Msa0132010:CDS
GGATGTTGAGGATGAATCAG+TGG 0.640619 1_3:-62950214 Msa0132010:CDS
AAAGGAAATGCCGGACCATG+CGG 0.646962 1_3:+62949064 None:intergenic
TTACCATCTCATAGTCCTAG+AGG 0.648723 1_3:-62951422 Msa0132010:CDS
CGACCTCTAGGACTATGAGA+TGG 0.648898 1_3:+62951419 None:intergenic
AGTGGTCAGATTTCAAGCCA+AGG 0.648899 1_3:-62951500 Msa0132010:CDS
ATGGGAATGCCTGACATGAA+CGG 0.649844 1_3:-62949241 Msa0132010:CDS
GGAAATGCGCTGTCATAAGG+TGG 0.651300 1_3:-62950622 Msa0132010:CDS
AAGTAGATGAAATGATGCCT+TGG 0.653879 1_3:-62951289 Msa0132010:CDS
TCCATTGAATAATCCAACCA+AGG 0.654964 1_3:+62951272 None:intergenic
TGACATTGATTCGATGATGG+CGG 0.655078 1_3:+62951023 None:intergenic
TAAGGTGGTAGAGCCATCCA+AGG 0.655378 1_3:-62950607 Msa0132010:CDS
TGTGAAAATGCGGCCATGTG+TGG 0.658564 1_3:+62949307 None:intergenic
ACCCAAATGGACGAAGAAGG+CGG 0.661772 1_3:+62952540 None:intergenic
GGAATGCCTGACATGAACGG+CGG 0.663426 1_3:-62949238 Msa0132010:CDS
TGGCCAGATCGAATACTCAA+GGG 0.668407 1_3:-62949123 Msa0132010:CDS
TTGATACTCTGCATTGATCG+TGG 0.671849 1_3:-62948485 Msa0132010:three_prime_UTR
AGAGGTCGAGATAAAGACGT+AGG 0.676780 1_3:-62951404 Msa0132010:CDS
CCTGTGGATCCATACACAGA+CGG 0.678896 1_3:+62949004 None:intergenic
TTAACAAGAGCTGAATCAGG+AGG 0.682638 1_3:+62950672 None:intergenic
ATTGAATGAGATTCCAATGT+CGG 0.685130 1_3:-62951324 Msa0132010:CDS
GATGCCCATCTGTGAAAATG+CGG 0.689000 1_3:+62949297 None:intergenic
ATACACAGACGGACCCGGAG+CGG 0.699444 1_3:+62949015 None:intergenic
ACGGAAAAGTAGAGACACTG+AGG 0.744015 1_3:-62950340 Msa0132010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGATTAAAAAATTAAGAT+TGG - chr1_3:62948607-62948626 Msa0132010:intron 10.0%
!!! ATAATTTTATACAGTTTTTC+AGG + chr1_3:62950952-62950971 None:intergenic 15.0%
!! TGAAAAACTGTATAAAATTA+TGG - chr1_3:62950951-62950970 Msa0132010:CDS 15.0%
!! CAAAAGATTTATGAAATTAT+TGG - chr1_3:62951065-62951084 Msa0132010:CDS 15.0%
!!! ACTTAATTCCTTATTTATTT+CGG - chr1_3:62951260-62951279 Msa0132010:CDS 15.0%
!! AGAATAACAGAAAATTATTA+CGG + chr1_3:62952043-62952062 None:intergenic 15.0%
!! ATAATGTTAAGATATATAAG+TGG + chr1_3:62952579-62952598 None:intergenic 15.0%
!! ATGCAATATTTAAGAAGTTT+GGG + chr1_3:62948330-62948349 None:intergenic 20.0%
!! AATGCAATATTTAAGAAGTT+TGG + chr1_3:62948331-62948350 None:intergenic 20.0%
!!! TTTCTTAGTTTTGTTTGTTT+TGG - chr1_3:62949264-62949283 Msa0132010:CDS 20.0%
!! TATTGGATAAAAGAAGTAAT+GGG - chr1_3:62949674-62949693 Msa0132010:intron 20.0%
!! ATTATTAACTTACTTCACTA+TGG + chr1_3:62950536-62950555 None:intergenic 20.0%
!!! AGCTTATTTTATTTCCATTT+CGG - chr1_3:62950794-62950813 Msa0132010:CDS 20.0%
!! ATCATAATTTATGTATACAG+AGG - chr1_3:62950823-62950842 Msa0132010:CDS 20.0%
!! TGTTGACAAATATAGAATAT+TGG - chr1_3:62950988-62951007 Msa0132010:CDS 20.0%
!! TTCATTGATAAAGACTCTTT+TGG - chr1_3:62948773-62948792 Msa0132010:intron 25.0%
!! TCATTGATAAAGACTCTTTT+GGG - chr1_3:62948774-62948793 Msa0132010:intron 25.0%
! TGTTTGATCATGAAATGAAA+TGG - chr1_3:62949219-62949238 Msa0132010:CDS 25.0%
! AGTAATAACAATCCAAAGAT+AGG - chr1_3:62949469-62949488 Msa0132010:intron 25.0%
! CTATTGGATAAAAGAAGTAA+TGG - chr1_3:62949673-62949692 Msa0132010:intron 25.0%
! TAATGGGAATCAGATATTTA+GGG - chr1_3:62949690-62949709 Msa0132010:intron 25.0%
! GAAAATAATAATGTTAGCAG+TGG - chr1_3:62949883-62949902 Msa0132010:intron 25.0%
! ATGGGAAAAATTCATTACAT+TGG + chr1_3:62950016-62950035 None:intergenic 25.0%
! GTTATAGGAGTTAAGAATAA+AGG - chr1_3:62950123-62950142 Msa0132010:intron 25.0%
!!! CTTCAATTAAAGTGTTTTCT+TGG + chr1_3:62950607-62950626 None:intergenic 25.0%
! CAAGAAAACACTTTAATTGA+AGG - chr1_3:62950605-62950624 Msa0132010:CDS 25.0%
! AAACTAACCTTATTGCAATT+AGG + chr1_3:62950897-62950916 None:intergenic 25.0%
! TTGAATACACTTCATGAATA+CGG + chr1_3:62951139-62951158 None:intergenic 25.0%
!!! TTTTTTTGAACAAGCCAAAA+TGG + chr1_3:62951188-62951207 None:intergenic 25.0%
! GAATGATATTTACTTGAACT+TGG + chr1_3:62951366-62951385 None:intergenic 25.0%
! AACTAAAATATTAATGCCGA+GGG + chr1_3:62951390-62951409 None:intergenic 25.0%
! AAACTAAAATATTAATGCCG+AGG + chr1_3:62951391-62951410 None:intergenic 25.0%
CTTAACCAAAACATTAACCA+TGG - chr1_3:62948183-62948202 Msa0132010:three_prime_UTR 30.0%
! CTAAACCATGGTTAATGTTT+TGG + chr1_3:62948191-62948210 None:intergenic 30.0%
AAGGTTTCTATTCTAAACCA+TGG + chr1_3:62948203-62948222 None:intergenic 30.0%
AGACAAAAACAGGGAAAAAA+AGG + chr1_3:62948222-62948241 None:intergenic 30.0%
AGATTATTCACACAACAAGA+AGG + chr1_3:62948424-62948443 None:intergenic 30.0%
TCCAGTTGAAAAATGATAAC+TGG - chr1_3:62948478-62948497 Msa0132010:three_prime_UTR 30.0%
CCAGTTGAAAAATGATAACT+GGG - chr1_3:62948479-62948498 Msa0132010:three_prime_UTR 30.0%
AAAAATGATAACTGGGTCAT+TGG - chr1_3:62948486-62948505 Msa0132010:three_prime_UTR 30.0%
! CATTGATAAAGACTCTTTTG+GGG - chr1_3:62948775-62948794 Msa0132010:intron 30.0%
ATCTCACTCATAGTTTATTG+TGG - chr1_3:62948883-62948902 Msa0132010:CDS 30.0%
CTTTGTCTTCAAACTTCATT+TGG - chr1_3:62948925-62948944 Msa0132010:CDS 30.0%
AAACTTCATTTGGATTCCAA+AGG - chr1_3:62948935-62948954 Msa0132010:CDS 30.0%
ATTGCTTCCAACATATTCTT+CGG + chr1_3:62948975-62948994 None:intergenic 30.0%
AATGCTAATACTAAGAGCTT+TGG - chr1_3:62948992-62949011 Msa0132010:CDS 30.0%
!!! AGCTTTGGTTTTTTGATTTG+TGG - chr1_3:62949007-62949026 Msa0132010:CDS 30.0%
AAACGGTATAACTCATAAAG+AGG + chr1_3:62949087-62949106 None:intergenic 30.0%
TCTTTATGAGTTATACCGTT+TGG - chr1_3:62949086-62949105 Msa0132010:CDS 30.0%
!! AAGCTTGATAATGAGACTAA+CGG - chr1_3:62949117-62949136 Msa0132010:CDS 30.0%
!! TGGATTTGATTTGAATGTGT+AGG - chr1_3:62949284-62949303 Msa0132010:CDS 30.0%
AGCTCAAAAAAATCATTCTC+AGG + chr1_3:62949310-62949329 None:intergenic 30.0%
!!! TGAGAATGATTTTTTTGAGC+TGG - chr1_3:62949309-62949328 Msa0132010:CDS 30.0%
!!! ATGATTTTTTTGAGCTGGTT+TGG - chr1_3:62949314-62949333 Msa0132010:CDS 30.0%
!!! TGATTTTTTTGAGCTGGTTT+GGG - chr1_3:62949315-62949334 Msa0132010:CDS 30.0%
AATCCAAAGATAGGAAAGTT+TGG - chr1_3:62949478-62949497 Msa0132010:intron 30.0%
ATTGAATGAGATTCCAATGT+CGG - chr1_3:62949516-62949535 Msa0132010:CDS 30.0%
TGATTTCTTTCATGAACTCA+CGG - chr1_3:62949618-62949637 Msa0132010:intron 30.0%
CAATAGAGTAAAACTATTCG+AGG + chr1_3:62949659-62949678 None:intergenic 30.0%
!! CTCGAATAGTTTTACTCTAT+TGG - chr1_3:62949657-62949676 Msa0132010:intron 30.0%
! GTAATGGGAATCAGATATTT+AGG - chr1_3:62949689-62949708 Msa0132010:intron 30.0%
ATCTGTAACTGTTAGATCTA+GGG - chr1_3:62949846-62949865 Msa0132010:intron 30.0%
! TGAATTTTTCCCATTTTGCA+AGG - chr1_3:62950022-62950041 Msa0132010:intron 30.0%
ATCCAAATCGAGATTTGAAA+CGG - chr1_3:62950481-62950500 Msa0132010:CDS 30.0%
! GTGTTTTCTTGGTTTATAGA+GGG + chr1_3:62950596-62950615 None:intergenic 30.0%
! AGTGTTTTCTTGGTTTATAG+AGG + chr1_3:62950597-62950616 None:intergenic 30.0%
ACTTTAATTGAAGGATGTTG+AGG - chr1_3:62950614-62950633 Msa0132010:CDS 30.0%
AAGTGCATAATCTATCTGAA+AGG - chr1_3:62950709-62950728 Msa0132010:CDS 30.0%
AGTGCATAATCTATCTGAAA+GGG - chr1_3:62950710-62950729 Msa0132010:CDS 30.0%
AACATGACACAAATAACAGA+TGG + chr1_3:62950745-62950764 None:intergenic 30.0%
TGGAAATAAAATAAGCTCGA+GGG + chr1_3:62950791-62950810 None:intergenic 30.0%
ATGGAAATAAAATAAGCTCG+AGG + chr1_3:62950792-62950811 None:intergenic 30.0%
ACTCATACCTAATTGCAATA+AGG - chr1_3:62950887-62950906 Msa0132010:CDS 30.0%
! AAATGTCAGAAGTTCCATTT+TGG - chr1_3:62951171-62951190 Msa0132010:CDS 30.0%
CAGAAATGCCGAAATAAATA+AGG + chr1_3:62951271-62951290 None:intergenic 30.0%
ACTAAAATATTAATGCCGAG+GGG + chr1_3:62951389-62951408 None:intergenic 30.0%
TGAATCATTGGAAATCTAGA+CGG + chr1_3:62951629-62951648 None:intergenic 30.0%
TGGATTTAAACAGTCAACTT+TGG - chr1_3:62952121-62952140 Msa0132010:intron 30.0%
AATCACAAATTTGTATTGCC+TGG + chr1_3:62952197-62952216 None:intergenic 30.0%
AGGCAATACAAATTTGTGAT+TGG - chr1_3:62952196-62952215 Msa0132010:five_prime_UTR 30.0%
TATTGTGAACATGTATCAGT+AGG - chr1_3:62952223-62952242 Msa0132010:five_prime_UTR 30.0%
TACTTTGACATAAAGCATAG+AGG - chr1_3:62952278-62952297 Msa0132010:five_prime_UTR 30.0%
!! ACTTATTGTTTGAGTTGTAC+CGG - chr1_3:62952322-62952341 Msa0132010:five_prime_UTR 30.0%
! AAAGATGAGAAACGACATTT+TGG + chr1_3:62952414-62952433 None:intergenic 30.0%
AAATATCCTCTTCAGTAATC+TGG + chr1_3:62952448-62952467 None:intergenic 30.0%
!!! TCTGTGCAATTTTCTAGTTT+CGG + chr1_3:62952520-62952539 None:intergenic 30.0%
! CTAGAAAATTGCACAGATTT+TGG - chr1_3:62952523-62952542 Msa0132010:five_prime_UTR 30.0%
CACTATGAAAGATCTGAATA+AGG + chr1_3:62952637-62952656 None:intergenic 30.0%
GATCTTTCATAGTGATTCTT+TGG - chr1_3:62952643-62952662 Msa0132010:five_prime_UTR 30.0%
GATAACTTCTGAGTTGCATT+TGG - chr1_3:62948385-62948404 Msa0132010:three_prime_UTR 35.0%
!! CCCAGTTATCATTTTTCAAC+TGG + chr1_3:62948482-62948501 None:intergenic 35.0%
!! AATACAGTGACACTGATTCT+CGG + chr1_3:62948539-62948558 None:intergenic 35.0%
! AGAATCAGTGTCACTGTATT+CGG - chr1_3:62948539-62948558 Msa0132010:intron 35.0%
GCACTAATCAGCATATAAGT+CGG + chr1_3:62948580-62948599 None:intergenic 35.0%
GTCACTTACTTTACTTGACA+AGG - chr1_3:62948636-62948655 Msa0132010:intron 35.0%
TAGTTTATTGTGGCTTACGA+CGG - chr1_3:62948893-62948912 Msa0132010:CDS 35.0%
GATAACACCGAAGAATATGT+TGG - chr1_3:62948965-62948984 Msa0132010:CDS 35.0%
!!! GATTTGTGGTTTTTTAGCTG+AGG - chr1_3:62949021-62949040 Msa0132010:CDS 35.0%
!!! TGGTTTTTTAGCTGAGGTTT+TGG - chr1_3:62949027-62949046 Msa0132010:CDS 35.0%
TGTTAATGAACTTACGACGA+AGG + chr1_3:62949162-62949181 None:intergenic 35.0%
TCACCAAACTTTCCTATCTT+TGG + chr1_3:62949484-62949503 None:intergenic 35.0%
! AAGTTTGGTGATTTAGACTC+TGG - chr1_3:62949493-62949512 Msa0132010:CDS 35.0%
AAGTAGATGAAATGATGCCT+TGG - chr1_3:62949551-62949570 Msa0132010:intron 35.0%
TCCATTGAATAATCCAACCA+AGG + chr1_3:62949571-62949590 None:intergenic 35.0%
TGGTTGGATTATTCAATGGA+TGG - chr1_3:62949571-62949590 Msa0132010:intron 35.0%
! AGAACCGATGAATGTTTCTA+AGG - chr1_3:62949732-62949751 Msa0132010:intron 35.0%
! GAACCGATGAATGTTTCTAA+GGG - chr1_3:62949733-62949752 Msa0132010:intron 35.0%
GAACCCTTAGAAACATTCAT+CGG + chr1_3:62949739-62949758 None:intergenic 35.0%
!! GTTTGACATTGATTCGATGA+TGG + chr1_3:62949823-62949842 None:intergenic 35.0%
CATCTGTAACTGTTAGATCT+AGG - chr1_3:62949845-62949864 Msa0132010:intron 35.0%
AGAGCTAATCTTCAGAACAT+AGG - chr1_3:62950060-62950079 Msa0132010:intron 35.0%
TCAGCAAGATCAGATGTTAT+AGG - chr1_3:62950108-62950127 Msa0132010:intron 35.0%
! GCATTTGGTTCAAGCAATTT+CGG + chr1_3:62950279-62950298 None:intergenic 35.0%
TGTTTAGTAGCTACAGCATT+TGG + chr1_3:62950294-62950313 None:intergenic 35.0%
ATTGTCACCAAGAACTTGAA+TGG + chr1_3:62950364-62950383 None:intergenic 35.0%
! ATTCAAGTTCTTGGTGACAA+TGG - chr1_3:62950363-62950382 Msa0132010:CDS 35.0%
TTCCGTTTCAAATCTCGATT+TGG + chr1_3:62950486-62950505 None:intergenic 35.0%
TGAATCAGTGGGAGTTAAAA+AGG - chr1_3:62950638-62950657 Msa0132010:CDS 35.0%
GAATCAGTGGGAGTTAAAAA+GGG - chr1_3:62950639-62950658 Msa0132010:CDS 35.0%
ATTATGATCATCAGCCGAAA+TGG + chr1_3:62950811-62950830 None:intergenic 35.0%
CTAAGAAGAGCAAAATCAGA+AGG + chr1_3:62950924-62950943 None:intergenic 35.0%
! TAGAATATTGGTTGCCACTA+TGG - chr1_3:62951000-62951019 Msa0132010:CDS 35.0%
AGCTAAGTTTGAATCCATAG+TGG + chr1_3:62951017-62951036 None:intergenic 35.0%
AAGTAAATATCATTCCCCCT+CGG - chr1_3:62951371-62951390 Msa0132010:CDS 35.0%
CTAAAATATTAATGCCGAGG+GGG + chr1_3:62951388-62951407 None:intergenic 35.0%
! TTAGGTATGGGTTATGGAAT+GGG - chr1_3:62951581-62951600 Msa0132010:intron 35.0%
! ATCTGAGGTACTTGAATCAT+TGG + chr1_3:62951641-62951660 None:intergenic 35.0%
ATATGATTTCCTTGCATCTG+AGG + chr1_3:62951656-62951675 None:intergenic 35.0%
!! TTAATTTGTGAGTCCACATC+TGG + chr1_3:62951914-62951933 None:intergenic 35.0%
CAAATTAAGCAAAACACTGC+TGG - chr1_3:62951926-62951945 Msa0132010:five_prime_UTR 35.0%
ACACTAGTATAACAGAGAAG+CGG + chr1_3:62952085-62952104 None:intergenic 35.0%
GTTGACTGTTTAAATCCAAC+AGG + chr1_3:62952119-62952138 None:intergenic 35.0%
TTCAAACCAGATTACTGAAG+AGG - chr1_3:62952439-62952458 Msa0132010:five_prime_UTR 35.0%
TTTACCTGTCAAAATAGCCA+TGG - chr1_3:62952482-62952501 Msa0132010:five_prime_UTR 35.0%
TTACCTGTCAAAATAGCCAT+GGG - chr1_3:62952483-62952502 Msa0132010:five_prime_UTR 35.0%
!! TTGCACAGATTTTGGTATCT+TGG - chr1_3:62952531-62952550 Msa0132010:five_prime_UTR 35.0%
!! TGCACAGATTTTGGTATCTT+GGG - chr1_3:62952532-62952551 Msa0132010:five_prime_UTR 35.0%
CAACTGGGAAGACAAAAACA+GGG + chr1_3:62948231-62948250 None:intergenic 40.0%
ACAACTGGGAAGACAAAAAC+AGG + chr1_3:62948232-62948251 None:intergenic 40.0%
AAGTTTGGGAATGACCCAAA+TGG + chr1_3:62948316-62948335 None:intergenic 40.0%
AGTTTATTGTGGCTTACGAC+GGG - chr1_3:62948894-62948913 Msa0132010:CDS 40.0%
CTTCATTTGGATTCCAAAGG+TGG - chr1_3:62948938-62948957 Msa0132010:CDS 40.0%
!! GGTGTTATCTTTTCCACCTT+TGG + chr1_3:62948954-62948973 None:intergenic 40.0%
TACCTCTACTTGATTGACCT+TGG + chr1_3:62949360-62949379 None:intergenic 40.0%
GTAGAAAGAGTCCATCTTGT+AGG - chr1_3:62949377-62949396 Msa0132010:CDS 40.0%
TTACCATCTCATAGTCCTAG+AGG - chr1_3:62949418-62949437 Msa0132010:intron 40.0%
ATTTCATCTACTTCGCGAGA+TGG + chr1_3:62949544-62949563 None:intergenic 40.0%
AGATGAAATGATGCCTTGGT+TGG - chr1_3:62949555-62949574 Msa0132010:intron 40.0%
GCCTTGGTTGGATTATTCAA+TGG - chr1_3:62949567-62949586 Msa0132010:intron 40.0%
TAAAACTATTCGAGGCAGGA+AGG + chr1_3:62949651-62949670 None:intergenic 40.0%
AGAGTAAAACTATTCGAGGC+AGG + chr1_3:62949655-62949674 None:intergenic 40.0%
!! TGACATTGATTCGATGATGG+CGG + chr1_3:62949820-62949839 None:intergenic 40.0%
TAATGTTAGCAGTGGTAACC+AGG - chr1_3:62949891-62949910 Msa0132010:intron 40.0%
ATGCGAGTAATATCCCCATA+AGG + chr1_3:62949922-62949941 None:intergenic 40.0%
TAAGCTAGAAAAATCGCTCG+AGG + chr1_3:62949953-62949972 None:intergenic 40.0%
AAGCAAGATCCTATAATGCC+TGG - chr1_3:62949982-62950001 Msa0132010:CDS 40.0%
ATTACATTGGAACCATTGCC+AGG + chr1_3:62950003-62950022 None:intergenic 40.0%
TTAACAAGAGCTGAATCAGG+AGG + chr1_3:62950171-62950190 None:intergenic 40.0%
GGATTAACAAGAGCTGAATC+AGG + chr1_3:62950174-62950193 None:intergenic 40.0%
TCAGCTCTTGTTAATCCAAG+CGG - chr1_3:62950177-62950196 Msa0132010:CDS 40.0%
CAAAGGTTTCAAATCAGCCT+TGG + chr1_3:62950253-62950272 None:intergenic 40.0%
ATTCCATTCTCTTTGCAAGC+AGG + chr1_3:62950324-62950343 None:intergenic 40.0%
! CAACCTTCCATTCAAGTTCT+TGG - chr1_3:62950354-62950373 Msa0132010:CDS 40.0%
TCACCAAGAACTTGAATGGA+AGG + chr1_3:62950360-62950379 None:intergenic 40.0%
GATGTTGAGGATGAATCAGT+GGG - chr1_3:62950627-62950646 Msa0132010:CDS 40.0%
TCTATCTGAAAGGGTGAGTA+AGG - chr1_3:62950719-62950738 Msa0132010:CDS 40.0%
TCGGCATTTCTGACTTCATA+CGG - chr1_3:62951279-62951298 Msa0132010:CDS 40.0%
TTTCTGACTTCATACGGACT+AGG - chr1_3:62951285-62951304 Msa0132010:CDS 40.0%
TAAAGCTTCTATGCTGGATG+AGG - chr1_3:62951312-62951331 Msa0132010:CDS 40.0%
TGACATCATCTGCGTAAGAT+AGG + chr1_3:62951450-62951469 None:intergenic 40.0%
TCTTACGCAGATGATGTCAA+TGG - chr1_3:62951451-62951470 Msa0132010:CDS 40.0%
CTTACGCAGATGATGTCAAT+GGG - chr1_3:62951452-62951471 Msa0132010:CDS 40.0%
ATGCATATGGGGTTAGGTAT+GGG - chr1_3:62951569-62951588 Msa0132010:intron 40.0%
! GTTAGGTATGGGTTATGGAA+TGG - chr1_3:62951580-62951599 Msa0132010:intron 40.0%
ATTCAAGTACCTCAGATGCA+AGG - chr1_3:62951644-62951663 Msa0132010:intron 40.0%
AAACCCTTGAGTATTCGATC+TGG + chr1_3:62951723-62951742 None:intergenic 40.0%
AGATCGAATACTCAAGGGTT+TGG - chr1_3:62951722-62951741 Msa0132010:CDS 40.0%
ACATGTTGAAGCTGTGAATC+CGG - chr1_3:62951859-62951878 Msa0132010:five_prime_UTR 40.0%
GAAAATTGATCACAGAGACC+TGG + chr1_3:62951999-62952018 None:intergenic 40.0%
! CAGTCAACTTTGGTGCATAA+TGG - chr1_3:62952131-62952150 Msa0132010:intron 40.0%
! TCAACTTTGGTGCATAATGG+TGG - chr1_3:62952134-62952153 Msa0132010:intron 40.0%
GAGTATCAATCATAACCTGC+CGG + chr1_3:62952344-62952363 None:intergenic 40.0%
! TTGATACTCTGCATTGATCG+TGG - chr1_3:62952355-62952374 Msa0132010:five_prime_UTR 40.0%
!!! ATTCCCATGGCTATTTTGAC+AGG + chr1_3:62952489-62952508 None:intergenic 40.0%
!! GCACAGATTTTGGTATCTTG+GGG - chr1_3:62952533-62952552 Msa0132010:five_prime_UTR 40.0%
ATGACCCAAATGGACGAAGA+AGG + chr1_3:62948306-62948325 None:intergenic 45.0%
! ATCAGTGTCACTGTATTCGG+AGG - chr1_3:62948542-62948561 Msa0132010:intron 45.0%
CAAGCTTCTCTCTAGCCAAA+CGG + chr1_3:62949104-62949123 None:intergenic 45.0%
AGTGGTCAGATTTCAAGCCA+AGG - chr1_3:62949340-62949359 Msa0132010:CDS 45.0%
AGCCAAGGTCAATCAAGTAG+AGG - chr1_3:62949355-62949374 Msa0132010:CDS 45.0%
GATGGCAAACTCCTACAAGA+TGG + chr1_3:62949391-62949410 None:intergenic 45.0%
TGAGATGGTAAGCAGTGAGA+TGG + chr1_3:62949409-62949428 None:intergenic 45.0%
ACGTCTTTATCTCGACCTCT+AGG + chr1_3:62949436-62949455 None:intergenic 45.0%
AGAGGTCGAGATAAAGACGT+AGG - chr1_3:62949436-62949455 Msa0132010:intron 45.0%
GGCTCTTTGCAACACGAATA+TGG - chr1_3:62949592-62949611 Msa0132010:intron 45.0%
TAAGGGTTCTTCAGCTGAAC+AGG - chr1_3:62949750-62949769 Msa0132010:intron 45.0%
GCAAGACATAAAGCTAGTGC+CGG - chr1_3:62949784-62949803 Msa0132010:intron 45.0%
!! TGATGGCGGATATAACTGAC+CGG + chr1_3:62949806-62949825 None:intergenic 45.0%
GAAAAATCGCTCGAGGAAGA+TGG + chr1_3:62949946-62949965 None:intergenic 45.0%
GATCCTATAATGCCTGGCAA+TGG - chr1_3:62949988-62950007 Msa0132010:CDS 45.0%
GAACCATTGCCAGGCATTAT+AGG + chr1_3:62949994-62950013 None:intergenic 45.0%
! TTAGCTCTCACAATAGCTGC+AGG + chr1_3:62950048-62950067 None:intergenic 45.0%
CAGAACATAGGCTTGAAGTC+TGG - chr1_3:62950072-62950091 Msa0132010:intron 45.0%
ACCTTATGACAGCGCATTTC+CGG + chr1_3:62950219-62950238 None:intergenic 45.0%
GGTTTCAAATCAGCCTTGGA+TGG + chr1_3:62950249-62950268 None:intergenic 45.0%
TCAAGCAATTTCGGCTGCAA+AGG + chr1_3:62950270-62950289 None:intergenic 45.0%
AAGCCTGCTTGCAAAGAGAA+TGG - chr1_3:62950318-62950337 Msa0132010:intron 45.0%
TCTTCTGTTTGCTCTGGCAA+TGG - chr1_3:62950438-62950457 Msa0132010:CDS 45.0%
ACGGAAAAGTAGAGACACTG+AGG - chr1_3:62950500-62950519 Msa0132010:CDS 45.0%
GGATGTTGAGGATGAATCAG+TGG - chr1_3:62950626-62950645 Msa0132010:CDS 45.0%
AGTGGGAGTTAAAAAGGGAG+CGG - chr1_3:62950644-62950663 Msa0132010:CDS 45.0%
GATTATGCACTTCAGCAGCA+CGG + chr1_3:62950701-62950720 None:intergenic 45.0%
GCTCGAGGGAAAATATGTGT+GGG + chr1_3:62950777-62950796 None:intergenic 45.0%
AGCTCGAGGGAAAATATGTG+TGG + chr1_3:62950778-62950797 None:intergenic 45.0%
GGTGGATAAAGCTTCTATGC+TGG - chr1_3:62951306-62951325 Msa0132010:CDS 45.0%
CCAGCAGGTAACATCATTTG+AGG + chr1_3:62951494-62951513 None:intergenic 45.0%
CCTCAAATGATGTTACCTGC+TGG - chr1_3:62951491-62951510 Msa0132010:CDS 45.0%
! ATGGCCGCATTTTCACAGAT+GGG - chr1_3:62951539-62951558 Msa0132010:intron 45.0%
GATGCCCATCTGTGAAAATG+CGG + chr1_3:62951546-62951565 None:intergenic 45.0%
! GCATTTTCACAGATGGGCAT+CGG - chr1_3:62951545-62951564 Msa0132010:intron 45.0%
CATGCATATGGGGTTAGGTA+TGG - chr1_3:62951568-62951587 Msa0132010:intron 45.0%
! ATGGGGTTAGGTATGGGTTA+TGG - chr1_3:62951575-62951594 Msa0132010:intron 45.0%
ATGGGAATGCCTGACATGAA+CGG - chr1_3:62951599-62951618 Msa0132010:intron 45.0%
ATGGCCAGATCGAATACTCA+AGG - chr1_3:62951716-62951735 Msa0132010:CDS 45.0%
TGGCCAGATCGAATACTCAA+GGG - chr1_3:62951717-62951736 Msa0132010:CDS 45.0%
TACTCAAGGGTTTGGACTTC+CGG - chr1_3:62951730-62951749 Msa0132010:CDS 45.0%
CCTCCTGAAAAAGGAAATGC+CGG + chr1_3:62951788-62951807 None:intergenic 45.0%
!!! CGGCATTTCCTTTTTCAGGA+GGG - chr1_3:62951786-62951805 Msa0132010:five_prime_UTR 45.0%
ATAAGAGGCCCTCCTGAAAA+AGG + chr1_3:62951797-62951816 None:intergenic 45.0%
TCTTATGAACTCATCCGCTC+CGG - chr1_3:62951811-62951830 Msa0132010:five_prime_UTR 45.0%
AAAAGATCGAAGGCCAGATG+TGG - chr1_3:62951898-62951917 Msa0132010:five_prime_UTR 45.0%
GGGATAAACAGACCTGGTTA+GGG + chr1_3:62951973-62951992 None:intergenic 45.0%
AGGGATAAACAGACCTGGTT+AGG + chr1_3:62951974-62951993 None:intergenic 45.0%
TGGTTAGGGATAAACAGACC+TGG + chr1_3:62951979-62951998 None:intergenic 45.0%
AGGTCTGTTTATCCCTAACC+AGG - chr1_3:62951978-62951997 Msa0132010:five_prime_UTR 45.0%
TGATCACAGAGACCTGGTTA+GGG + chr1_3:62951993-62952012 None:intergenic 45.0%
TTGATCACAGAGACCTGGTT+AGG + chr1_3:62951994-62952013 None:intergenic 45.0%
GTGTGTGTGAACTAACCTGT+TGG - chr1_3:62952101-62952120 Msa0132010:five_prime_UTR 45.0%
!! ATTGTTTGAGTTGTACCGGC+AGG - chr1_3:62952326-62952345 Msa0132010:five_prime_UTR 45.0%
TCGTGGCTAGTAGAAGAATC+AGG - chr1_3:62952372-62952391 Msa0132010:five_prime_UTR 45.0%
TTCGGAGACTAGAATTCCCA+TGG + chr1_3:62952502-62952521 None:intergenic 45.0%
AGTGACACACGCACACAACT+GGG + chr1_3:62948246-62948265 None:intergenic 50.0%
ACCCAAATGGACGAAGAAGG+CGG + chr1_3:62948303-62948322 None:intergenic 50.0%
CTGATTCTCGGCTGAGATCA+AGG + chr1_3:62948527-62948546 None:intergenic 50.0%
!! TTTGAGCTGGTTTGGGAGAG+TGG - chr1_3:62949322-62949341 Msa0132010:CDS 50.0%
!! CGACCTCTAGGACTATGAGA+TGG + chr1_3:62949424-62949443 None:intergenic 50.0%
GGTCGAGATAAAGACGTAGG+AGG - chr1_3:62949439-62949458 Msa0132010:intron 50.0%
CGAGATAAAGACGTAGGAGG+AGG - chr1_3:62949442-62949461 Msa0132010:intron 50.0%
GTAACCAGGACGTGCCTTAT+GGG - chr1_3:62949905-62949924 Msa0132010:intron 50.0%
TAACCAGGACGTGCCTTATG+GGG - chr1_3:62949906-62949925 Msa0132010:intron 50.0%
AGCTGCAGGCCTTGCAAAAT+GGG + chr1_3:62950034-62950053 None:intergenic 50.0%
TAGCTGCAGGCCTTGCAAAA+TGG + chr1_3:62950035-62950054 None:intergenic 50.0%
TCCAAGCGGTGAGTGTTCAA+AGG - chr1_3:62950191-62950210 Msa0132010:CDS 50.0%
TCCTTTGAACACTCACCGCT+TGG + chr1_3:62950195-62950214 None:intergenic 50.0%
CGGTGAGTGTTCAAAGGAAC+CGG - chr1_3:62950197-62950216 Msa0132010:CDS 50.0%
ACCGGAAATGCGCTGTCATA+AGG - chr1_3:62950215-62950234 Msa0132010:CDS 50.0%
GGAAATGCGCTGTCATAAGG+TGG - chr1_3:62950218-62950237 Msa0132010:intron 50.0%
TAAGGTGGTAGAGCCATCCA+AGG - chr1_3:62950233-62950252 Msa0132010:intron 50.0%
! CTTGGTGACAATGGCGCTAA+AGG - chr1_3:62950372-62950391 Msa0132010:CDS 50.0%
GGACACACAGCTGCTGAAAA+AGG - chr1_3:62950393-62950412 Msa0132010:CDS 50.0%
CACAGCTGCTGAAAAAGGCA+TGG - chr1_3:62950398-62950417 Msa0132010:CDS 50.0%
! AGCTGCTGAAAAAGGCATGG+AGG - chr1_3:62950401-62950420 Msa0132010:CDS 50.0%
! TGCTGAAAAAGGCATGGAGG+TGG - chr1_3:62950404-62950423 Msa0132010:CDS 50.0%
GCCTCTTCTTCTGTTTGCTC+TGG - chr1_3:62950432-62950451 Msa0132010:CDS 50.0%
GCCAGAGCAAACAGAAGAAG+AGG + chr1_3:62950436-62950455 None:intergenic 50.0%
! TTCAGCAGCACGGCTTCTTT+TGG + chr1_3:62950691-62950710 None:intergenic 50.0%
GTATACAGAGGCGAAGAGAC+AGG - chr1_3:62950835-62950854 Msa0132010:CDS 50.0%
!! CTGACTTCATACGGACTAGG+TGG - chr1_3:62951288-62951307 Msa0132010:CDS 50.0%
CAGATGATGTCAATGGGAGC+TGG - chr1_3:62951458-62951477 Msa0132010:CDS 50.0%
TGTGAAAATGCGGCCATGTG+TGG + chr1_3:62951536-62951555 None:intergenic 50.0%
! CATGGCCGCATTTTCACAGA+TGG - chr1_3:62951538-62951557 Msa0132010:intron 50.0%
!! ATGGGCATCGGCATGCATAT+GGG - chr1_3:62951557-62951576 Msa0132010:intron 50.0%
ATCGGCATGCATATGGGGTT+AGG - chr1_3:62951563-62951582 Msa0132010:intron 50.0%
ACCCTCTGCTATGCATGGAA+TGG - chr1_3:62951697-62951716 Msa0132010:CDS 50.0%
GCCATTCCATGCATAGCAGA+GGG + chr1_3:62951701-62951720 None:intergenic 50.0%
ACTCAAGGGTTTGGACTTCC+GGG - chr1_3:62951731-62951750 Msa0132010:CDS 50.0%
ATTTCCATGCCAATGCCGCA+TGG - chr1_3:62951761-62951780 Msa0132010:CDS 50.0%
AAAGGAAATGCCGGACCATG+CGG + chr1_3:62951779-62951798 None:intergenic 50.0%
! GGTCCGGCATTTCCTTTTTC+AGG - chr1_3:62951782-62951801 Msa0132010:five_prime_UTR 50.0%
!!! CCGGCATTTCCTTTTTCAGG+AGG - chr1_3:62951785-62951804 Msa0132010:five_prime_UTR 50.0%
GGAGCGGATGAGTTCATAAG+AGG + chr1_3:62951812-62951831 None:intergenic 50.0%
CTTATGAACTCATCCGCTCC+GGG - chr1_3:62951812-62951831 Msa0132010:five_prime_UTR 50.0%
CCTGTGGATCCATACACAGA+CGG + chr1_3:62951839-62951858 None:intergenic 50.0%
CACAGCTTCAACATGTCCTG+TGG + chr1_3:62951855-62951874 None:intergenic 50.0%
CGTGTGGCTCAAAAGATCGA+AGG - chr1_3:62951888-62951907 Msa0132010:five_prime_UTR 50.0%
TACAAGCCAGATCCCTAACC+AGG - chr1_3:62951958-62951977 Msa0132010:five_prime_UTR 50.0%
AACAGACCTGGTTAGGGATC+TGG + chr1_3:62951967-62951986 None:intergenic 50.0%
TAATGGTGGCCATGCTTCAG+TGG - chr1_3:62952148-62952167 Msa0132010:intron 50.0%
TGTCATCAGCCACTGAAGCA+TGG + chr1_3:62952160-62952179 None:intergenic 50.0%
GACAGTGAAGCTGCTAATCC+AGG - chr1_3:62952176-62952195 Msa0132010:five_prime_UTR 50.0%
CAGTGACACACGCACACAAC+TGG + chr1_3:62948247-62948266 None:intergenic 55.0%
! GTGTGCGTGTGTCACTGCAT+TGG - chr1_3:62948250-62948269 Msa0132010:three_prime_UTR 55.0%
GCCGCCTTCTTCGTCCATTT+GGG - chr1_3:62948299-62948318 Msa0132010:three_prime_UTR 55.0%
GACTAACGGCGCAAGTGTAG+CGG - chr1_3:62949131-62949150 Msa0132010:CDS 55.0%
GGTAACCAGGACGTGCCTTA+TGG - chr1_3:62949904-62949923 Msa0132010:intron 55.0%
TATCCCCATAAGGCACGTCC+TGG + chr1_3:62949912-62949931 None:intergenic 55.0%
TCTGGCAATGGTGCAGACAG+AGG - chr1_3:62950450-62950469 Msa0132010:CDS 55.0%
CAATGGTGCAGACAGAGGCT+CGG - chr1_3:62950455-62950474 Msa0132010:CDS 55.0%
GGAGTTAAAAAGGGAGCGGC+TGG - chr1_3:62950648-62950667 Msa0132010:CDS 55.0%
TGCATGTGCTGCATTCCAGC+AGG + chr1_3:62951509-62951528 None:intergenic 55.0%
GCACATGCATGCACCACACA+TGG - chr1_3:62951520-62951539 Msa0132010:CDS 55.0%
!! GATGGGCATCGGCATGCATA+TGG - chr1_3:62951556-62951575 Msa0132010:intron 55.0%
!! TGGGCATCGGCATGCATATG+GGG - chr1_3:62951558-62951577 Msa0132010:intron 55.0%
GGAATGCCTGACATGAACGG+CGG - chr1_3:62951602-62951621 Msa0132010:intron 55.0%
GAATGCCTGACATGAACGGC+GGG - chr1_3:62951603-62951622 Msa0132010:intron 55.0%
GGCCATTCCATGCATAGCAG+AGG + chr1_3:62951702-62951721 None:intergenic 55.0%
GGCATGGAAATTCCCTGTCC+CGG + chr1_3:62951752-62951771 None:intergenic 55.0%
GATCCATACACAGACGGACC+CGG + chr1_3:62951833-62951852 None:intergenic 55.0%
CCGTCTGTGTATGGATCCAC+AGG - chr1_3:62951836-62951855 Msa0132010:five_prime_UTR 55.0%
TTTGAGCCACACGCTGAAGC+CGG + chr1_3:62951881-62951900 None:intergenic 55.0%
CGCCGCCTTCTTCGTCCATT+TGG - chr1_3:62948298-62948317 Msa0132010:three_prime_UTR 60.0%
!! TCGCGAGATGGCACCGACAT+TGG + chr1_3:62949532-62949551 None:intergenic 60.0%
AAAAAGGGAGCGGCTGGACG+AGG - chr1_3:62950654-62950673 Msa0132010:CDS 60.0%
ATGCCCGTTGCGCATATGCC+TGG - chr1_3:62951674-62951693 Msa0132010:intron 60.0%
GGTCCAGGCATATGCGCAAC+GGG + chr1_3:62951680-62951699 None:intergenic 60.0%
GGGTCCAGGCATATGCGCAA+CGG + chr1_3:62951681-62951700 None:intergenic 60.0%
CCATGCATAGCAGAGGGTCC+AGG + chr1_3:62951695-62951714 None:intergenic 60.0%
CCTGGACCCTCTGCTATGCA+TGG - chr1_3:62951692-62951711 Msa0132010:intron 60.0%
AGGGTTTGGACTTCCGGGAC+AGG - chr1_3:62951736-62951755 Msa0132010:CDS 60.0%
GGGTTTGGACTTCCGGGACA+GGG - chr1_3:62951737-62951756 Msa0132010:CDS 60.0%
CATGCCAATGCCGCATGGTC+CGG - chr1_3:62951766-62951785 Msa0132010:exon 60.0%
AATGCCGGACCATGCGGCAT+TGG + chr1_3:62951773-62951792 None:intergenic 60.0%
ATACACAGACGGACCCGGAG+CGG + chr1_3:62951828-62951847 None:intergenic 60.0%
GTGAATCCGGCTTCAGCGTG+TGG - chr1_3:62951872-62951891 Msa0132010:five_prime_UTR 60.0%
!! CGGACCATGCGGCATTGGCA+TGG + chr1_3:62951768-62951787 None:intergenic 65.0%
GCTCCGGGTCCGTCTGTGTA+TGG - chr1_3:62951827-62951846 Msa0132010:five_prime_UTR 65.0%
GCGGCTGGACGAGGAGTTGC+AGG - chr1_3:62950663-62950682 Msa0132010:CDS 70.0%
GACGGCCCGCCGTTCATGTC+AGG + chr1_3:62951611-62951630 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 62948171 62952691 62948171 ID=Msa0132010;Name=Msa0132010
chr1_3 mRNA 62948171 62952691 62948171 ID=Msa0132010-mRNA-1;Parent=Msa0132010;Name=Msa0132010-mRNA-1;_AED=0.08;_eAED=0.08;_QI=890|1|1|1|0.75|0.55|9|347|719
chr1_3 exon 62948171 62948514 62948171 ID=Msa0132010-mRNA-1:exon:21078;Parent=Msa0132010-mRNA-1
chr1_3 exon 62948645 62948728 62948645 ID=Msa0132010-mRNA-1:exon:21077;Parent=Msa0132010-mRNA-1
chr1_3 exon 62948883 62949401 62948883 ID=Msa0132010-mRNA-1:exon:21076;Parent=Msa0132010-mRNA-1
chr1_3 exon 62949490 62949555 62949490 ID=Msa0132010-mRNA-1:exon:21075;Parent=Msa0132010-mRNA-1
chr1_3 exon 62949954 62950019 62949954 ID=Msa0132010-mRNA-1:exon:21074;Parent=Msa0132010-mRNA-1
chr1_3 exon 62950131 62950235 62950131 ID=Msa0132010-mRNA-1:exon:21073;Parent=Msa0132010-mRNA-1
chr1_3 exon 62950320 62951556 62950320 ID=Msa0132010-mRNA-1:exon:21072;Parent=Msa0132010-mRNA-1
chr1_3 exon 62951696 62952128 62951696 ID=Msa0132010-mRNA-1:exon:21071;Parent=Msa0132010-mRNA-1
chr1_3 exon 62952149 62952691 62952149 ID=Msa0132010-mRNA-1:exon:21070;Parent=Msa0132010-mRNA-1
chr1_3 five_prime_UTR 62952149 62952691 62952149 ID=Msa0132010-mRNA-1:five_prime_utr;Parent=Msa0132010-mRNA-1
chr1_3 five_prime_UTR 62951782 62952128 62951782 ID=Msa0132010-mRNA-1:five_prime_utr;Parent=Msa0132010-mRNA-1
chr1_3 CDS 62951696 62951781 62951696 ID=Msa0132010-mRNA-1:cds;Parent=Msa0132010-mRNA-1
chr1_3 CDS 62950320 62951556 62950320 ID=Msa0132010-mRNA-1:cds;Parent=Msa0132010-mRNA-1
chr1_3 CDS 62950131 62950235 62950131 ID=Msa0132010-mRNA-1:cds;Parent=Msa0132010-mRNA-1
chr1_3 CDS 62949954 62950019 62949954 ID=Msa0132010-mRNA-1:cds;Parent=Msa0132010-mRNA-1
chr1_3 CDS 62949490 62949555 62949490 ID=Msa0132010-mRNA-1:cds;Parent=Msa0132010-mRNA-1
chr1_3 CDS 62948883 62949401 62948883 ID=Msa0132010-mRNA-1:cds;Parent=Msa0132010-mRNA-1
chr1_3 CDS 62948648 62948728 62948648 ID=Msa0132010-mRNA-1:cds;Parent=Msa0132010-mRNA-1
chr1_3 three_prime_UTR 62948645 62948647 62948645 ID=Msa0132010-mRNA-1:three_prime_utr;Parent=Msa0132010-mRNA-1
chr1_3 three_prime_UTR 62948171 62948514 62948171 ID=Msa0132010-mRNA-1:three_prime_utr;Parent=Msa0132010-mRNA-1
Gene Sequence

>Msa0132010

ATGCCTCTTTATGAGTTATACCGTTTGGCTAGAGAGAAGCTTGATAATGAGACTAACGGCGCAAGTGTAGCGGATCAACCTTCGTCGCCTGAGAATGATTTTTTTGAGCTGGTTTGGGAGAGTGGTCAGATTTCAAGCCAAGGTCAATCAAGTAGAGGTAGAAAGAGTCCATCTTGTAGGAGTTTGCCATCTCACTGCTTACCATCTCATAGTCCTAGAGGTCGAGATAAAGACGTAGGAGGAGGATTTAGTAATAACAATCCAAAGATAGGAAAGTTTGGTGATTTAGACTCTGGATTGAATGAGATTCCAATGTCGGTGCCATCTCGCGAAGTAGATGAAATGATGCCTTGGTTGGATTATTCAATGGATGGCTCTTTGCAACACGAATATGGTTCTGATTTCTTTCATGAACTCACGGAGAACGACCTTCCTGCCTCGAATAGTTTTACTCTATTGGATAAAAGAAGTAATGGGAATCAGATATTTAGGGACTCTCATAAAAATTCTGCAGAACCGATGAATGTTTCTAAGGGTTCTTCAGCTGAACAGGTTGTTGAGACTGCAAGACATAAAGCTAGTGCCGGTCAGTTATATCCGCCATCATCGAATCAATGTCAAACAACATCTGTAACTGTTAGATCTAGGGCATCAGATATAACTGAAAATAATAATGTTAGCAGTGGTAACCAGGACGTGCCTTATGGGGATATTACTCGCATTCCATCTTCCTCGAGCGATTTTTCTAGCTTAAAAGCGCAGAAGCAAGATCCTATAATGCCTGGCAATGGTTCCAATGTAATGAATTTTTCCCATTTTGCAAGGCCTGCAGCTATTGTGAGAGCTAATCTTCAGAACATAGGCTTGAAGTCTGGTTTGAATTCAGCTTCAGCAAGATCAGATGTTATAGGAGTTAAGAATAAAGGCGCTGCTTCGACTAGCAGCAATCCTCCTGATTCAGCTCTTGTTAATCCAAGCGGTGAGTGTTCAAAGGAACCGGAAATGCGCTGTCATAAGGTGGTAGAGCCATCCAAGGCTGATTTGAAACCTTTGCAGCCGAAATTGCTTGAACCAAATGCTGTAGCTACTAAACAATCGAAGCCTGCTTGCAAAGAGAATGGAATTAAGAATGATCAACCTTCCATTCAAGTTCTTGGTGACAATGGCGCTAAAGGACACACAGCTGCTGAAAAAGGCATGGAGGTGGCAGTAGCCTCTTCTTCTGTTTGCTCTGGCAATGGTGCAGACAGAGGCTCGGATGATCCAAATCGAGATTTGAAACGGAAAAGTAGAGACACTGAGGACTCTGAATGCCATAGTGAAGATGTTGAGGATGAATCAGTGGGAGTTAAAAAGGGAGCGGCTGGACGAGGAGTTGCAGGTTCCAAAAGAAGCCGTGCTGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATAAATGAGAAGATGCGTGCATTGCAAGAACTCATACCTAATTGCAATAAGGTGGATAAAGCTTCTATGCTGGATGAGGCAATTGAGTATCTAAAAACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCTGGTTTATATATGCCTCAAATGATGTTACCTGCTGGAATGCAGCACATGCATGCACCACACATGGCCGCATTTTCACAGATGGGCATCGGCATGCATATGGGGTTAGGTATGGGTTATGGAATGGGAATGCCTGACATGAACGGCGGGCCGTCTAGATTTCCAATGATTCAAGTACCTCAGATGCAAGGAAATCATATGCCCGTTGCGCATATGCCTGGACCCTCTGCTATGCATGGAATGGCCAGATCGAATACTCAAGGGTTTGGACTTCCGGGACAGGGAATTTCCATGCCAATGCCGCATGGTCCGGCATTTCCTTTTTCAGGAGGGCCTCTTATGAACTCATCCGCTCCGGGTCCGTCTGTGTATGGATCCACAGGACATGTTGAAGCTGTGAATCCGGCTTCAGCGTGTGGCTCAAAAGATCGAAGGCCAGATGTGGACTCACAAATTAAGCAAAACACTGCTGGTCGTGACTCTACAAGCCAGATCCCTAACCAGTCAACTTTGGTGCATAATGGTGGCCATGCTTCAGTGGCTGATGACAGTGAAGCTGCTAATCCAGGCAATACAAATTTGTGA
Protein sequence

>Msa0132010

MPLYELYRLAREKLDNETNGASVADQPSSPENDFFELVWESGQISSQGQSSRGRKSPSCRSLPSHCLPSHSPRGRDKDVGGGFSNNNPKIGKFGDLDSGLNEIPMSVPSREVDEMMPWLDYSMDGSLQHEYGSDFFHELTENDLPASNSFTLLDKRSNGNQIFRDSHKNSAEPMNVSKGSSAEQVVETARHKASAGQLYPPSSNQCQTTSVTVRSRASDITENNNVSSGNQDVPYGDITRIPSSSSDFSSLKAQKQDPIMPGNGSNVMNFSHFARPAAIVRANLQNIGLKSGLNSASARSDVIGVKNKGAASTSSNPPDSALVNPSGECSKEPEMRCHKVVEPSKADLKPLQPKLLEPNAVATKQSKPACKENGIKNDQPSIQVLGDNGAKGHTAAEKGMEVAVASSSVCSGNGADRGSDDPNRDLKRKSRDTEDSECHSEDVEDESVGVKKGAAGRGVAGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMPQMMLPAGMQHMHAPHMAAFSQMGIGMHMGLGMGYGMGMPDMNGGPSRFPMIQVPQMQGNHMPVAHMPGPSAMHGMARSNTQGFGLPGQGISMPMPHGPAFPFSGGPLMNSSAPGPSVYGSTGHVEAVNPASACGSKDRRPDVDSQIKQNTAGRDSTSQIPNQSTLVHNGGHASVADDSEAANPGNTNL*