AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0270050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0270050 MtrunA17_Chr2g0276841 98.009 703 10 2 1 702 1 700 0.0 1450
Msa0270050 MtrunA17_Chr2g0294841 57.871 667 258 5 41 697 22 675 0.0 809
Msa0270050 MtrunA17_Chr1g0198761 46.308 650 327 7 57 687 21 667 0.0 612
Msa0270050 MtrunA17_Chr2g0290391 43.109 624 335 5 72 683 51 666 0.0 533
Msa0270050 MtrunA17_Chr5g0431001 49.087 438 218 2 59 491 48 485 4.60e-155 458
Msa0270050 MtrunA17_Chr5g0448761 29.338 634 417 14 72 683 60 684 2.48e-79 269
Msa0270050 MtrunA17_Chr2g0329031 27.014 633 425 16 78 701 20 624 2.30e-74 254
Msa0270050 MtrunA17_Chr1g0207551 29.373 606 363 15 72 649 34 602 3.95e-71 247
Msa0270050 MtrunA17_Chr1g0202341 28.169 568 385 10 72 628 51 606 4.12e-71 244
Msa0270050 MtrunA17_Chr5g0440451 29.310 580 362 12 72 626 43 599 6.91e-67 237
Msa0270050 MtrunA17_Chr3g0082121 28.042 567 380 13 70 628 41 587 2.16e-62 221
Msa0270050 MtrunA17_Chr2g0296781 28.152 579 360 20 78 628 3 553 2.73e-62 221
Msa0270050 MtrunA17_Chr3g0080351 26.332 638 405 17 72 685 76 672 7.74e-62 222
Msa0270050 MtrunA17_Chr5g0441581 27.700 574 373 14 72 628 32 580 1.72e-59 213
Msa0270050 MtrunA17_Chr2g0287651 26.655 574 373 15 78 628 81 629 1.99e-59 215
Msa0270050 MtrunA17_Chr8g0363841 25.385 650 426 14 73 685 18 645 2.11e-58 209
Msa0270050 MtrunA17_Chr6g0458391 27.130 575 380 12 64 628 217 762 1.12e-56 206
Msa0270050 MtrunA17_Chr6g0458391 34.400 125 76 3 72 196 91 209 3.33e-13 73.2
Msa0270050 MtrunA17_Chr1g0203051 25.490 561 374 14 78 618 85 621 2.73e-56 203
Msa0270050 MtrunA17_Chr6g0477261 30.519 462 269 15 198 628 2 442 3.02e-56 203
Msa0270050 MtrunA17_Chr2g0287061 26.445 571 351 14 72 628 183 698 3.60e-55 202
Msa0270050 MtrunA17_Chr2g0324011 25.694 576 389 13 72 628 10 565 7.10e-52 189
Msa0270050 MtrunA17_Chr2g0291581 25.963 597 387 15 72 643 71 637 2.75e-51 189
Msa0270050 MtrunA17_Chr3g0118611 30.075 399 254 5 234 626 117 496 1.25e-50 189
Msa0270050 MtrunA17_Chr1g0203721 23.917 623 427 15 74 670 65 666 1.21e-48 184
Msa0270050 MtrunA17_Chr5g0448511 29.058 382 261 4 251 626 15 392 3.13e-48 178
Msa0270050 MtrunA17_Chr1g0196541 24.458 646 432 17 78 699 3 616 4.02e-48 181
Msa0270050 MtrunA17_Chr2g0291591 23.592 568 384 13 41 580 22 567 1.35e-39 154
Msa0270050 MtrunA17_Chr1g0164591 27.864 323 214 8 152 470 1 308 1.12e-33 132
Msa0270050 MtrunA17_Chr3g0081281 49.462 93 47 0 215 307 1 93 2.30e-28 108
Msa0270050 MtrunA17_Chr7g0258861 28.328 293 197 7 72 359 10 294 3.82e-25 106
Msa0270050 MtrunA17_Chr2g0308841 25.455 220 150 4 424 633 14 229 3.44e-13 70.5
Msa0270050 MtrunA17_Chr7g0233911 35.659 129 70 6 72 198 34 151 1.05e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0270050 AT1G10240.2 75.543 691 147 3 8 698 6 674 0.0 1121
Msa0270050 AT1G10240.1 75.543 691 147 3 8 698 6 674 0.0 1121
Msa0270050 AT5G28530.1 42.072 637 352 6 60 684 43 674 1.07e-175 518
Msa0270050 AT5G28530.3 42.072 637 348 6 60 684 43 670 2.13e-175 517
Msa0270050 AT5G28530.2 42.072 637 348 6 60 684 43 670 2.13e-175 517
Msa0270050 AT5G28530.4 38.437 627 326 8 60 684 43 611 6.46e-141 426
Msa0270050 AT5G28530.5 38.437 627 322 8 60 684 43 607 1.32e-140 426
Msa0270050 AT4G38180.1 29.750 679 440 13 15 673 22 683 5.57e-84 282
Msa0270050 AT4G15090.1 29.355 620 401 14 72 672 51 652 3.48e-76 261
Msa0270050 AT4G15090.5 29.355 620 401 14 72 672 51 652 3.48e-76 261
Msa0270050 AT4G15090.3 29.355 620 401 14 72 672 51 652 3.48e-76 261
Msa0270050 AT4G15090.2 29.355 620 401 14 72 672 51 652 3.48e-76 261
Msa0270050 AT4G15090.4 29.355 620 401 14 72 672 51 652 3.48e-76 261
Msa0270050 AT1G76320.3 27.094 609 406 14 78 672 3 587 7.91e-61 216
Msa0270050 AT1G76320.2 26.634 612 405 14 78 672 3 587 1.36e-60 217
Msa0270050 AT1G76320.1 26.634 612 405 14 78 672 3 587 1.85e-60 216
Msa0270050 AT1G76320.4 26.634 612 405 14 78 672 3 587 1.85e-60 216
Msa0270050 AT3G22170.2 24.611 642 392 19 72 672 70 660 7.00e-57 208
Msa0270050 AT3G22170.1 24.611 642 392 19 72 672 70 660 7.00e-57 208
Msa0270050 AT2G27110.2 25.955 628 405 17 72 685 49 630 1.07e-53 199
Msa0270050 AT2G27110.1 25.955 628 405 17 72 685 49 630 1.07e-53 199
Msa0270050 AT3G06250.2 26.690 577 338 16 72 628 190 701 9.31e-52 192
Msa0270050 AT3G06250.1 26.690 577 338 16 72 628 190 701 9.31e-52 192
Msa0270050 AT3G06250.3 26.690 577 338 16 72 628 190 701 9.31e-52 192
Msa0270050 AT1G52520.1 26.361 588 365 18 72 628 85 635 1.04e-50 188
Msa0270050 AT5G18960.2 26.923 572 346 17 72 628 211 725 6.47e-50 187
Msa0270050 AT5G18960.1 26.923 572 346 17 72 628 211 725 6.47e-50 187
Msa0270050 AT4G19990.3 26.123 601 358 15 75 643 24 570 4.51e-48 181
Msa0270050 AT4G19990.4 26.123 601 358 15 75 643 24 570 4.51e-48 181
Msa0270050 AT4G19990.5 26.123 601 358 15 75 643 24 570 5.61e-48 181
Msa0270050 AT4G19990.7 26.123 601 358 15 75 643 38 584 6.08e-48 181
Msa0270050 AT4G19990.6 26.123 601 358 15 75 643 24 570 9.83e-48 181
Msa0270050 AT4G19990.2 26.123 601 358 15 75 643 24 570 9.83e-48 181
Msa0270050 AT2G27110.3 27.802 464 295 11 234 685 50 485 1.24e-46 177
Msa0270050 AT1G80010.1 27.027 592 369 17 72 628 95 658 5.14e-46 175
Msa0270050 AT2G32250.5 22.575 567 369 13 75 628 41 550 8.10e-43 166
Msa0270050 AT4G19990.1 25.906 552 334 13 119 643 10 513 9.31e-43 165
Msa0270050 AT4G38170.1 28.045 353 246 4 283 628 45 396 1.28e-42 162
Msa0270050 AT2G32250.2 22.261 566 372 13 75 628 41 550 1.38e-42 166
Msa0270050 AT2G32250.4 22.261 566 372 13 75 628 41 550 1.38e-42 166
Msa0270050 AT2G32250.6 22.575 567 369 13 75 628 41 550 1.38e-42 166
Msa0270050 AT2G32250.1 22.575 567 369 13 75 628 41 550 1.38e-42 166
Msa0270050 AT2G32250.3 22.575 567 369 13 75 628 41 550 1.38e-42 166
Msa0270050 AT2G32250.8 22.518 564 367 13 78 628 3 509 2.76e-42 164
Msa0270050 AT2G32250.7 22.202 563 370 13 78 628 3 509 3.06e-42 164

Find 173 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTGATTAACAACCTTTA+TGG 0.138871 2_3:+1342716 None:intergenic
CATTCATTTGAAATTGAAAT+TGG 0.139647 2_3:+1344093 None:intergenic
AGGGAGATGGTCTGTTCTTT+TGG 0.145904 2_3:-1341914 Msa0270050:CDS
ATAAGCAAAACCACTGAATT+TGG 0.147239 2_3:-1343299 Msa0270050:CDS
CCTTCTTGGTAGGCTTTCTT+AGG 0.189142 2_3:-1342169 Msa0270050:intron
TTGACATGCCGCTGGGGATA+TGG 0.190733 2_3:-1342821 Msa0270050:CDS
TTAGAGATGAAACCATATTT+TGG 0.193583 2_3:+1341007 None:intergenic
GTGTACTCAAATTTAAAATT+AGG 0.227389 2_3:+1342960 None:intergenic
TCTTGGTTCAATGCTGTTCT+AGG 0.230975 2_3:-1342016 Msa0270050:CDS
CCACCATAATCATGAACTTT+TGG 0.234641 2_3:-1343243 Msa0270050:CDS
GTTCCAAAAGTTCATGATTA+TGG 0.235757 2_3:+1343240 None:intergenic
TATGGAATGCCCTGCTTCTT+TGG 0.236061 2_3:-1342783 Msa0270050:CDS
AGTTAAGCTATTCCAAAATA+TGG 0.247042 2_3:-1341019 Msa0270050:CDS
CTTAGTTTGGGTTGATGATT+TGG 0.272442 2_3:+1343373 None:intergenic
CTGGCACATTGTAATGAAAT+TGG 0.282052 2_3:+1340901 None:intergenic
ATCCTTATGTTTGCCAAAAC+AGG 0.285583 2_3:-1343158 Msa0270050:CDS
ATGAACAGAAATCCCTGTTT+TGG 0.290771 2_3:+1343145 None:intergenic
AAATCTAGGGTTTCTTCTTC+TGG 0.296205 2_3:+1343017 None:intergenic
TATTTCGTTGAGGCTTAGTT+TGG 0.297452 2_3:+1343360 None:intergenic
TGCACATTCTTAACAAATCT+AGG 0.298629 2_3:+1343003 None:intergenic
AAGAATGTGCAGAAATATTA+AGG 0.303262 2_3:-1342991 Msa0270050:CDS
AAACCAGTGACGCGCCATTC+TGG 0.316021 2_3:+1343272 None:intergenic
TTGGAATAGCTTAACTCTTT+CGG 0.327991 2_3:+1341026 None:intergenic
TAGTCATTCCCGCAAGAAAA+TGG 0.334474 2_3:+1341819 None:intergenic
TAGCACACAGCCAAAGAAGC+AGG 0.342849 2_3:+1342773 None:intergenic
TCATCAAATGATGAGACTTA+TGG 0.350578 2_3:-1343126 Msa0270050:CDS
TGATCCCTCTGACCAACATT+TGG 0.356055 2_3:-1343684 Msa0270050:CDS
AAGGAGGTCGCAGAGTTTAC+TGG 0.359371 2_3:-1341239 Msa0270050:CDS
TGCGAAGCGAATTGATTGTT+AGG 0.370439 2_3:-1344072 Msa0270050:five_prime_UTR
CAAAACATGCTTTCTGCATA+TGG 0.375824 2_3:-1342060 Msa0270050:CDS
TTGGGAGGAGGAGGTGGAGG+AGG 0.380602 2_3:-1343665 Msa0270050:CDS
TCATCAAACCACACTCCATT+TGG 0.382393 2_3:-1343609 Msa0270050:CDS
ATATAGCTCGCGCTCACTTT+GGG 0.386287 2_3:-1341861 Msa0270050:CDS
ATGGTGAAATTTCTTTAGAA+TGG 0.386546 2_3:-1340715 Msa0270050:three_prime_UTR
AGAAAATGGCTTCTTAGATA+TGG 0.389745 2_3:+1341833 None:intergenic
GGAAGGAATCGAACTTGGTT+TGG 0.392049 2_3:+1343218 None:intergenic
TATATAGCTCGCGCTCACTT+TGG 0.393538 2_3:-1341862 Msa0270050:CDS
CGTAGCAGCGTGCGATTCCA+TGG 0.396995 2_3:+1341374 None:intergenic
ATCTTCCAGATGTGGTTGTC+AGG 0.399237 2_3:-1343333 Msa0270050:CDS
GCTTGCTCACTTTGTTGAAC+AGG 0.402511 2_3:-1341735 Msa0270050:intron
CTTGCGGGAATGACTACAAC+TGG 0.403842 2_3:-1341812 Msa0270050:CDS
CACCGAAGATATCATACAAT+TGG 0.404756 2_3:+1342883 None:intergenic
GTCTAAAGAACGATTAGATA+TGG 0.411264 2_3:-1340968 Msa0270050:CDS
TAAGCAAAACCACTGAATTT+GGG 0.413718 2_3:-1343298 Msa0270050:CDS
GATCCCTCTGACCAACATTT+GGG 0.420366 2_3:-1343683 Msa0270050:CDS
AATAGAGAAGCCGCAGGTCT+TGG 0.423335 2_3:+1343484 None:intergenic
CCTCCAGAATGGCGCGTCAC+TGG 0.424652 2_3:-1343275 Msa0270050:CDS
TGGGTTGGGATAAATAATTA+TGG 0.425124 2_3:-1342801 Msa0270050:CDS
CAACATTTGGGAGGAGGAGG+TGG 0.430387 2_3:-1343671 Msa0270050:CDS
CACTGCATTTGACATGCCGC+TGG 0.431194 2_3:-1342829 Msa0270050:CDS
ATAAGCCTGACAACCACATC+TGG 0.432847 2_3:+1343328 None:intergenic
CTGTTGTGTACAAAATGTAT+AGG 0.435140 2_3:-1340660 Msa0270050:three_prime_UTR
CTTGAGAAGTGCGTCGAACC+TGG 0.435619 2_3:-1343101 Msa0270050:CDS
CAATGTGTGGTTCGATGAAC+AGG 0.438367 2_3:-1340838 Msa0270050:three_prime_UTR
CCAGAGATACTTCTACCATT+AGG 0.440893 2_3:-1340882 Msa0270050:CDS
TCTCTGAGAGTTCTTTCAAC+AGG 0.443737 2_3:-1341147 Msa0270050:CDS
CCTAATGGTAGAAGTATCTC+TGG 0.445108 2_3:+1340882 None:intergenic
GGAATCTATGATGACTGAAC+TGG 0.447437 2_3:-1340861 Msa0270050:exon
ATTTCGTTGAGGCTTAGTTT+GGG 0.449059 2_3:+1343361 None:intergenic
CGGATGGGAAGATATGCATC+TGG 0.452008 2_3:+1341108 None:intergenic
CAAAATGTTAGCCTCAAAAC+AGG 0.452685 2_3:-1341402 Msa0270050:CDS
TGCCGCTGGGGATATGGGTT+GGG 0.453477 2_3:-1342815 Msa0270050:CDS
TGACATGCCGCTGGGGATAT+GGG 0.454706 2_3:-1342820 Msa0270050:CDS
TAGGTGAACGCTACAATGAC+TGG 0.457850 2_3:-1341997 Msa0270050:CDS
GTTTGGGTTGATGATTTGGC+AGG 0.459466 2_3:+1343377 None:intergenic
TAAACGGTTGTTTGCATCAA+GGG 0.461284 2_3:+1342938 None:intergenic
TTGTTGTTGGGTCCACCAAA+TGG 0.463735 2_3:+1343594 None:intergenic
TACTTTGTTTGTCACCGTGC+TGG 0.469337 2_3:-1343407 Msa0270050:CDS
TAAATTAACAATGTGTCGAT+TGG 0.471898 2_3:+1341883 None:intergenic
CATTTGGGAGGAGGAGGTGG+AGG 0.472758 2_3:-1343668 Msa0270050:CDS
TCAGTAAAAGGCAAATATCC+AGG 0.474275 2_3:+1343083 None:intergenic
ATCCAATTGTATGATATCTT+CGG 0.477575 2_3:-1342885 Msa0270050:CDS
GGAAACATTTGACCGATGTA+TGG 0.479605 2_3:+1343545 None:intergenic
CATGGAATCGCACGCTGCTA+CGG 0.484767 2_3:-1341373 Msa0270050:CDS
TTGACGACTTTGAACTAGGC+TGG 0.486705 2_3:-1341937 Msa0270050:CDS
TGAAGCTTCGAAAAGGCAAA+AGG 0.488243 2_3:+1341342 None:intergenic
GCACATTCTTAACAAATCTA+GGG 0.488962 2_3:+1343004 None:intergenic
AAATTCCAGAAAATTCAAAC+TGG 0.489969 2_3:+1341181 None:intergenic
CAGTCATCATAGATTCCTAA+TGG 0.491526 2_3:+1340867 None:intergenic
ACTCTTTCGGCATGATCGCT+AGG 0.495476 2_3:+1341039 None:intergenic
CTGAATTTGGGCCTCCAGAA+TGG 0.496915 2_3:-1343286 Msa0270050:CDS
ATCTAATCGTTCTTTAGACT+TGG 0.498595 2_3:+1340972 None:intergenic
TCAGTTGACGACTTTGAACT+AGG 0.498779 2_3:-1341941 Msa0270050:CDS
ACTGCATTTGACATGCCGCT+GGG 0.500632 2_3:-1342828 Msa0270050:CDS
ATGCAGGAAGGAATCGAACT+TGG 0.504851 2_3:+1343213 None:intergenic
ATTAACAACCTTTATGGCCC+AGG 0.508147 2_3:+1342722 None:intergenic
CACCTCCTCCTCCCAAATGT+TGG 0.508316 2_3:+1343672 None:intergenic
GCTTCAAGAACAACTTGTGT+TGG 0.510259 2_3:-1341325 Msa0270050:CDS
TTGTGAGAAAGTATGACAAT+TGG 0.510937 2_3:-1340799 Msa0270050:three_prime_UTR
ATGCCGCTGGGGATATGGGT+TGG 0.515095 2_3:-1342816 Msa0270050:CDS
TTGTTCTTGAAGCTTCGAAA+AGG 0.515435 2_3:+1341335 None:intergenic
GCGAAGCGAATTGATTGTTA+GGG 0.515636 2_3:-1344071 Msa0270050:five_prime_UTR
GACTTTAGAGAGAGGAAACA+TGG 0.522539 2_3:-1344129 Msa0270050:five_prime_UTR
TAGTAGCAAAGTTTCCGTCT+TGG 0.523045 2_3:-1342033 Msa0270050:CDS
ACCGTTTAGAAAATATTGCC+TGG 0.526747 2_3:-1342923 Msa0270050:CDS
TCAAACCACACTCCATTTGG+TGG 0.527504 2_3:-1343606 Msa0270050:CDS
GAGTAAGATAATGTCTGAAG+AGG 0.527986 2_3:-1343768 Msa0270050:exon
GTAGCAGCGTGCGATTCCAT+GGG 0.533610 2_3:+1341375 None:intergenic
CAATTAACGCCTTCATTCAA+CGG 0.534336 2_3:-1341778 Msa0270050:CDS
CTAAACGGTTGTTTGCATCA+AGG 0.535769 2_3:+1342937 None:intergenic
TGGAGTGTGGTTTGATGAGA+AGG 0.539574 2_3:+1343614 None:intergenic
GACCAACATTTGGGAGGAGG+AGG 0.539845 2_3:-1343674 Msa0270050:CDS
ACTGATACGACGCCATCGGA+TGG 0.541479 2_3:+1341092 None:intergenic
CTGATACGACGCCATCGGAT+GGG 0.543366 2_3:+1341093 None:intergenic
TCTGATATAGTTCTGTATGC+AGG 0.547078 2_3:+1343197 None:intergenic
TACTGCAAGATGAAACTGTC+CGG 0.547112 2_3:-1342752 Msa0270050:CDS
TCCTTATGTTTGCCAAAACA+GGG 0.551056 2_3:-1343157 Msa0270050:CDS
CCTCCCAAATGTTGGTCAGA+GGG 0.557531 2_3:+1343680 None:intergenic
GAGACAGAAGAATGGAAACT+TGG 0.557670 2_3:+1340938 None:intergenic
CAACGCTCCTTCCTCAAGGT+GGG 0.557799 2_3:-1340759 Msa0270050:three_prime_UTR
TGAACTAGGCTGGAGGGAGA+TGG 0.559599 2_3:-1341927 Msa0270050:CDS
TGATCAGTTAATATAGTCTG+TGG 0.559623 2_3:+1342127 None:intergenic
TATGTAGAGAGGAAAGTGAC+TGG 0.562906 2_3:+1344045 None:intergenic
ATCATACAATTGGATGGATG+AGG 0.563319 2_3:+1342893 None:intergenic
TATTTGCATTCTATCAGCCA+TGG 0.563497 2_3:-1340599 Msa0270050:three_prime_UTR
CAGCTTATAATTCCTTCATG+AGG 0.566205 2_3:+1341213 None:intergenic
AGACATCACACAAAAGTTGA+AGG 0.566338 2_3:-1341258 Msa0270050:CDS
TGGCAGGAGTGTTGCCAGCA+CGG 0.567905 2_3:+1343393 None:intergenic
CCAAAAGTTCATGATTATGG+TGG 0.568510 2_3:+1343243 None:intergenic
GAAGATATCATACAATTGGA+TGG 0.569457 2_3:+1342887 None:intergenic
AACGCTCCTTCCTCAAGGTG+GGG 0.573030 2_3:-1340758 Msa0270050:three_prime_UTR
AGCTTATAATTCCTTCATGA+GGG 0.573229 2_3:+1341214 None:intergenic
TTCTGGAGGCCCAAATTCAG+TGG 0.573388 2_3:+1343289 None:intergenic
TCTTATGCGAGACAGAAGAA+TGG 0.582203 2_3:+1340930 None:intergenic
CGACTTTGAACTAGGCTGGA+GGG 0.582819 2_3:-1341933 Msa0270050:CDS
AATAGAAAATCTTCCAGATG+TGG 0.584217 2_3:-1343341 Msa0270050:CDS
GGAAAAGACGGTGTTGGCAA+AGG 0.584524 2_3:-1343443 Msa0270050:CDS
TCCTCCCAAATGTTGGTCAG+AGG 0.584559 2_3:+1343679 None:intergenic
ACTTAGAAACCGTTGAATGA+AGG 0.586482 2_3:+1341769 None:intergenic
TCAACGCTCCTTCCTCAAGG+TGG 0.586724 2_3:-1340760 Msa0270050:three_prime_UTR
GATAGAATGCAAATAATACA+TGG 0.587982 2_3:+1340607 None:intergenic
TCTGACCAACATTTGGGAGG+AGG 0.587992 2_3:-1343677 Msa0270050:CDS
AAGTTCATGATTATGGTGGT+TGG 0.589394 2_3:+1343247 None:intergenic
ATGCATATCTTCCCATCCGA+TGG 0.597365 2_3:-1341104 Msa0270050:CDS
AGCACACAGCCAAAGAAGCA+GGG 0.598142 2_3:+1342774 None:intergenic
GTTTACTGGTCCCCTCATGA+AGG 0.604499 2_3:-1341225 Msa0270050:CDS
GATGGATGAGGCATACGACC+AGG 0.609900 2_3:+1342905 None:intergenic
ACGACGCCCCACCTTGAGGA+AGG 0.611875 2_3:+1340752 None:intergenic
CCAGTGACGCGCCATTCTGG+AGG 0.616513 2_3:+1343275 None:intergenic
ATATCAACGCTCCTTCCTCA+AGG 0.616758 2_3:-1340763 Msa0270050:three_prime_UTR
TGATATCTTCGGTGATGCTG+TGG 0.618259 2_3:-1342874 Msa0270050:CDS
ACCGAAGGAAAAGACGGTGT+TGG 0.619616 2_3:-1343449 Msa0270050:CDS
TGGGTCCACCAAATGGAGTG+TGG 0.620546 2_3:+1343601 None:intergenic
GCACACTGATACGACGCCAT+CGG 0.621865 2_3:+1341088 None:intergenic
TTATGGCCCAGGAAAATGAC+CGG 0.623189 2_3:+1342733 None:intergenic
GGTAGCAGGTGGATCCATGT+TGG 0.624526 2_3:-1343747 Msa0270050:CDS
CTGCATTTGACATGCCGCTG+GGG 0.625737 2_3:-1342827 Msa0270050:CDS
GGATGGGAAGATATGCATCT+GGG 0.625859 2_3:+1341109 None:intergenic
ATTAGACGTCATCGTACCGA+AGG 0.626176 2_3:-1343464 Msa0270050:CDS
TCATAAGCAGCATCGTGAGT+GGG 0.627606 2_3:+1343524 None:intergenic
GGTTTCTAAGTGCACAGACA+CGG 0.627911 2_3:-1341757 Msa0270050:CDS
TGAAACGACGCCCCACCTTG+AGG 0.628280 2_3:+1340748 None:intergenic
ATAATGTCTGAAGAGGTAGC+AGG 0.630355 2_3:-1343761 Msa0270050:CDS
GAAAATGTATGTATGTAGAG+AGG 0.633979 2_3:+1344034 None:intergenic
GTCATAAGCAGCATCGTGAG+TGG 0.636238 2_3:+1343523 None:intergenic
TCGAAAAGGCAAAAGGAGTG+AGG 0.641424 2_3:+1341349 None:intergenic
GCTTATAATTCCTTCATGAG+GGG 0.641658 2_3:+1341215 None:intergenic
CCCTCTGACCAACATTTGGG+AGG 0.646262 2_3:-1343680 Msa0270050:CDS
ACGTCTAATAGAGAAGCCGC+AGG 0.646866 2_3:+1343478 None:intergenic
ACGACTTTGAACTAGGCTGG+AGG 0.648729 2_3:-1341934 Msa0270050:CDS
TAGCAGCGTGCGATTCCATG+GGG 0.649314 2_3:+1341376 None:intergenic
ATGTCTGAAGAGGTAGCAGG+TGG 0.649630 2_3:-1343758 Msa0270050:CDS
TGAACGCTACAATGACTGGA+AGG 0.649833 2_3:-1341993 Msa0270050:CDS
ATATAGTTCTGTATGCAGGA+AGG 0.660408 2_3:+1343201 None:intergenic
AGAACAGCATTGAACCAAGA+CGG 0.662125 2_3:+1342019 None:intergenic
CATCATCACATTCCATACAT+CGG 0.667453 2_3:-1343557 Msa0270050:CDS
CATCGTACCGAAGGAAAAGA+CGG 0.676411 2_3:-1343455 Msa0270050:CDS
GTCATCATAAACTACCAACA+TGG 0.680695 2_3:+1343733 None:intergenic
ATCCCAACCCATATCCCCAG+CGG 0.701870 2_3:+1342813 None:intergenic
ATGACTGAACTGGCAATGTG+TGG 0.712539 2_3:-1340851 Msa0270050:three_prime_UTR
CATCACACAAAAGTTGAAGG+AGG 0.714854 2_3:-1341255 Msa0270050:CDS
TGTGTGGTTCGATGAACAGG+TGG 0.731352 2_3:-1340835 Msa0270050:three_prime_UTR
AGCAGCGTGCGATTCCATGG+GGG 0.736419 2_3:+1341377 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTCCAATTTTATAAAA+TGG - chr2_3:1342283-1342302 Msa0270050:intron 10.0%
!!! TTTATTCCAATTTTATAAAA+TGG - chr2_3:1342283-1342302 Msa0270050:intron 10.0%
!! AAAAAGAAAAGAAAAGAAAA+CGG - chr2_3:1340569-1340588 Msa0270050:three_prime_UTR 15.0%
!! AAATTGGAATAAAAAGAAAT+GGG + chr2_3:1342276-1342295 None:intergenic 15.0%
!! AAAATTGGAATAAAAAGAAA+TGG + chr2_3:1342277-1342296 None:intergenic 15.0%
!! AAATTGGAATAAAAAGAAAT+GGG + chr2_3:1342276-1342295 None:intergenic 15.0%
!! AAAATTGGAATAAAAAGAAA+TGG + chr2_3:1342277-1342296 None:intergenic 15.0%
!!! ATGTTTTGATTTTTTTACAT+TGG - chr2_3:1343039-1343058 Msa0270050:CDS 15.0%
!!! CATTCATTTGAAATTGAAAT+TGG + chr2_3:1340640-1340659 None:intergenic 20.0%
!! ATAATGAATGAATTGGAAAA+AGG + chr2_3:1340749-1340768 None:intergenic 20.0%
!! TTAAGCAATAATGAATGAAT+TGG + chr2_3:1340756-1340775 None:intergenic 20.0%
!!! TAGTAGAATTATACTTGTTT+TGG - chr2_3:1340882-1340901 Msa0270050:CDS 20.0%
!!! GTGTACTCAAATTTAAAATT+AGG + chr2_3:1341773-1341792 None:intergenic 20.0%
!!! TTATTGATTAACAACCTTTA+TGG + chr2_3:1342017-1342036 None:intergenic 20.0%
!!! ATTCTTTTCTGAAATAATAC+TGG - chr2_3:1342093-1342112 Msa0270050:CDS 20.0%
!! TCTCTACATACATACATTTT+CGG - chr2_3:1340698-1340717 Msa0270050:three_prime_UTR 25.0%
!! ATATTTGCCTTTTACTGAAA+AGG - chr2_3:1341652-1341671 Msa0270050:intron 25.0%
!! GATCTAATTTTCTAAATGAC+TGG + chr2_3:1341694-1341713 None:intergenic 25.0%
! AAGAATGTGCAGAAATATTA+AGG - chr2_3:1341739-1341758 Msa0270050:CDS 25.0%
! ATCCAATTGTATGATATCTT+CGG - chr2_3:1341845-1341864 Msa0270050:CDS 25.0%
! TTATTAGCGTCTATATCATT+TGG - chr2_3:1342038-1342057 Msa0270050:CDS 25.0%
!!! TTTTGATTCAAATTGTGTTG+TGG - chr2_3:1342062-1342081 Msa0270050:CDS 25.0%
! TATTTCAGAAAAGAATCCAA+GGG + chr2_3:1342089-1342108 None:intergenic 25.0%
! TTATTTCAGAAAAGAATCCA+AGG + chr2_3:1342090-1342109 None:intergenic 25.0%
! AAAAAAAACAAACTAGCACA+AGG + chr2_3:1342253-1342272 None:intergenic 25.0%
!! CCTTCACCATTTTATAAAAT+TGG + chr2_3:1342292-1342311 None:intergenic 25.0%
!! CCAATTTTATAAAATGGTGA+AGG - chr2_3:1342289-1342308 Msa0270050:intron 25.0%
! AATTTATGAACATTCCACAA+GGG + chr2_3:1342357-1342376 None:intergenic 25.0%
! AAATTTATGAACATTCCACA+AGG + chr2_3:1342358-1342377 None:intergenic 25.0%
!! CCTTCACCATTTTATAAAAT+TGG + chr2_3:1342292-1342311 None:intergenic 25.0%
!! CCAATTTTATAAAATGGTGA+AGG - chr2_3:1342289-1342308 Msa0270050:intron 25.0%
! AATTTATGAACATTCCACAA+GGG + chr2_3:1342357-1342376 None:intergenic 25.0%
! AAATTTATGAACATTCCACA+AGG + chr2_3:1342358-1342377 None:intergenic 25.0%
!! AACCATTCTTTAATTTACAC+TGG - chr2_3:1342526-1342545 Msa0270050:intron 25.0%
! AACCAGTGTAAATTAAAGAA+TGG + chr2_3:1342531-1342550 None:intergenic 25.0%
!!! CTTTCTTAGGTTTTATGAAT+GGG - chr2_3:1342574-1342593 Msa0270050:intron 25.0%
!! TAAATTAACAATGTGTCGAT+TGG + chr2_3:1342850-1342869 None:intergenic 25.0%
! ATTTAGTATCTCCAAAAAGT+AGG + chr2_3:1343205-1343224 None:intergenic 25.0%
!!! GTTGATTTTAAAGATCAAAC+TGG - chr2_3:1343277-1343296 Msa0270050:CDS 25.0%
! AAATTCCAGAAAATTCAAAC+TGG + chr2_3:1343552-1343571 None:intergenic 25.0%
!!! AATTTTCTGGAATTTTGTGT+AGG - chr2_3:1343557-1343576 Msa0270050:CDS 25.0%
!!! TTTTGAAGAATCTTAGAAGA+AGG + chr2_3:1343667-1343686 None:intergenic 25.0%
! AGTTAAGCTATTCCAAAATA+TGG - chr2_3:1343711-1343730 Msa0270050:CDS 25.0%
!! TTAGAGATGAAACCATATTT+TGG + chr2_3:1343726-1343745 None:intergenic 25.0%
!! GTCGTTTCAAATTATTTTCA+TGG - chr2_3:1343996-1344015 Msa0270050:intron 25.0%
!! ATGGTGAAATTTCTTTAGAA+TGG - chr2_3:1344015-1344034 Msa0270050:intron 25.0%
! GATAGAATGCAAATAATACA+TGG + chr2_3:1344126-1344145 None:intergenic 25.0%
GAAAATGTATGTATGTAGAG+AGG + chr2_3:1340699-1340718 None:intergenic 30.0%
ACTACTACTACTACTACATA+CGG + chr2_3:1340860-1340879 None:intergenic 30.0%
! TTGTTGTTGTTGTTGTTGTT+GGG + chr2_3:1341151-1341170 None:intergenic 30.0%
! GAAGATTTTCTATTTCGTTG+AGG + chr2_3:1341383-1341402 None:intergenic 30.0%
AATAGAAAATCTTCCAGATG+TGG - chr2_3:1341389-1341408 Msa0270050:CDS 30.0%
ATAAGCAAAACCACTGAATT+TGG - chr2_3:1341431-1341450 Msa0270050:CDS 30.0%
TAAGCAAAACCACTGAATTT+GGG - chr2_3:1341432-1341451 Msa0270050:CDS 30.0%
GTTCCAAAAGTTCATGATTA+TGG + chr2_3:1341493-1341512 None:intergenic 30.0%
TATCAGATGCTGACAAAAAT+CGG - chr2_3:1341549-1341568 Msa0270050:intron 30.0%
TCATCAAATGATGAGACTTA+TGG - chr2_3:1341604-1341623 Msa0270050:intron 30.0%
GCACATTCTTAACAAATCTA+GGG + chr2_3:1341729-1341748 None:intergenic 30.0%
TGCACATTCTTAACAAATCT+AGG + chr2_3:1341730-1341749 None:intergenic 30.0%
! ACCAGGCAATATTTTCTAAA+CGG + chr2_3:1341811-1341830 None:intergenic 30.0%
GAAGATATCATACAATTGGA+TGG + chr2_3:1341846-1341865 None:intergenic 30.0%
! TGGGTTGGGATAAATAATTA+TGG - chr2_3:1341929-1341948 Msa0270050:CDS 30.0%
ATTTCAGAAAAGAATCCAAG+GGG + chr2_3:1342088-1342107 None:intergenic 30.0%
!! TTTCTGAAATAATACTGGTG+TGG - chr2_3:1342098-1342117 Msa0270050:CDS 30.0%
ATAAAAAAACTGCACTGTCT+TGG - chr2_3:1342168-1342187 Msa0270050:intron 30.0%
GATTTGTATTAACCTCCATT+TGG + chr2_3:1342199-1342218 None:intergenic 30.0%
!!! CTTTTATTTTTACTCCCTTG+TGG - chr2_3:1342340-1342359 Msa0270050:intron 30.0%
GGAAAAAAAAAACTAGCACA+AGG + chr2_3:1342392-1342411 None:intergenic 30.0%
!!! CTTTTATTTTTACTCCCTTG+TGG - chr2_3:1342340-1342359 Msa0270050:intron 30.0%
!!! GGTTTTTTTATTCACCTTCT+TGG - chr2_3:1342547-1342566 Msa0270050:intron 30.0%
! TTTTTATTCACCTTCTTGGT+AGG - chr2_3:1342551-1342570 Msa0270050:intron 30.0%
!! GCTTTCTTAGGTTTTATGAA+TGG - chr2_3:1342573-1342592 Msa0270050:intron 30.0%
TGATCAGTTAATATAGTCTG+TGG + chr2_3:1342606-1342625 None:intergenic 30.0%
AGAAAATGGCTTCTTAGATA+TGG + chr2_3:1342900-1342919 None:intergenic 30.0%
CAATGATCATTCACATTTCA+TGG - chr2_3:1343067-1343086 Msa0270050:CDS 30.0%
!! GTGAACTTTATCCTACTTTT+TGG - chr2_3:1343191-1343210 Msa0270050:CDS 30.0%
CCAAAATTCACAGAAAGATA+AGG + chr2_3:1343228-1343247 None:intergenic 30.0%
! CCTTATCTTTCTGTGAATTT+TGG - chr2_3:1343225-1343244 Msa0270050:CDS 30.0%
AGCTTATAATTCCTTCATGA+GGG + chr2_3:1343519-1343538 None:intergenic 30.0%
TTGGAATAGCTTAACTCTTT+CGG + chr2_3:1343707-1343726 None:intergenic 30.0%
ATCTAATCGTTCTTTAGACT+TGG + chr2_3:1343761-1343780 None:intergenic 30.0%
GTCTAAAGAACGATTAGATA+TGG - chr2_3:1343762-1343781 Msa0270050:exon 30.0%
! TTGTGAGAAAGTATGACAAT+TGG - chr2_3:1343931-1343950 Msa0270050:intron 30.0%
CTGTTGTGTACAAAATGTAT+AGG - chr2_3:1344070-1344089 Msa0270050:five_prime_UTR 30.0%
TGTGGTAATTAAGCAGCAAA+AGG + chr2_3:1340782-1340801 None:intergenic 35.0%
TCAAAGTAAATTCACGAGTG+TGG + chr2_3:1340805-1340824 None:intergenic 35.0%
GAGTAAGATAATGTCTGAAG+AGG - chr2_3:1340962-1340981 Msa0270050:CDS 35.0%
GTCATCATAAACTACCAACA+TGG + chr2_3:1341000-1341019 None:intergenic 35.0%
! GTTGTTGTTGTTGTTGTTGT+TGG + chr2_3:1341152-1341171 None:intergenic 35.0%
CATCATCACATTCCATACAT+CGG - chr2_3:1341173-1341192 Msa0270050:CDS 35.0%
!! CTTAGTTTGGGTTGATGATT+TGG + chr2_3:1341360-1341379 None:intergenic 35.0%
ATTTCGTTGAGGCTTAGTTT+GGG + chr2_3:1341372-1341391 None:intergenic 35.0%
TATTTCGTTGAGGCTTAGTT+TGG + chr2_3:1341373-1341392 None:intergenic 35.0%
AAGTTCATGATTATGGTGGT+TGG + chr2_3:1341486-1341505 None:intergenic 35.0%
CCAAAAGTTCATGATTATGG+TGG + chr2_3:1341490-1341509 None:intergenic 35.0%
! CCACCATAATCATGAACTTT+TGG - chr2_3:1341487-1341506 Msa0270050:intron 35.0%
! ATATAGTTCTGTATGCAGGA+AGG + chr2_3:1341532-1341551 None:intergenic 35.0%
! TCTGATATAGTTCTGTATGC+AGG + chr2_3:1341536-1341555 None:intergenic 35.0%
ATCCTTATGTTTGCCAAAAC+AGG - chr2_3:1341572-1341591 Msa0270050:intron 35.0%
TCCTTATGTTTGCCAAAACA+GGG - chr2_3:1341573-1341592 Msa0270050:intron 35.0%
! ATGAACAGAAATCCCTGTTT+TGG + chr2_3:1341588-1341607 None:intergenic 35.0%
TCAGTAAAAGGCAAATATCC+AGG + chr2_3:1341650-1341669 None:intergenic 35.0%
! CTTACGTCCTTTTCAGTAAA+AGG + chr2_3:1341662-1341681 None:intergenic 35.0%
! CTTTTACTGAAAAGGACGTA+AGG - chr2_3:1341660-1341679 Msa0270050:intron 35.0%
! AAATCTAGGGTTTCTTCTTC+TGG + chr2_3:1341716-1341735 None:intergenic 35.0%
TAAACGGTTGTTTGCATCAA+GGG + chr2_3:1341795-1341814 None:intergenic 35.0%
ACCGTTTAGAAAATATTGCC+TGG - chr2_3:1341807-1341826 Msa0270050:CDS 35.0%
ATCATACAATTGGATGGATG+AGG + chr2_3:1341840-1341859 None:intergenic 35.0%
CACCGAAGATATCATACAAT+TGG + chr2_3:1341850-1341869 None:intergenic 35.0%
ACTGTCTTGGATATACCAAA+TGG - chr2_3:1342181-1342200 Msa0270050:intron 35.0%
ACAAATCAAAGCCTACACTT+TGG - chr2_3:1342212-1342231 Msa0270050:intron 35.0%
TGCATACATTTCCAAAGTGT+AGG + chr2_3:1342226-1342245 None:intergenic 35.0%
!! CTTAGGTTTTATGAATGGGA+AGG - chr2_3:1342578-1342597 Msa0270050:intron 35.0%
CAAAACATGCTTTCTGCATA+TGG - chr2_3:1342670-1342689 Msa0270050:intron 35.0%
!! TCTAAGAAGCCATTTTCTTG+CGG - chr2_3:1342902-1342921 Msa0270050:CDS 35.0%
CAATTAACGCCTTCATTCAA+CGG - chr2_3:1342952-1342971 Msa0270050:CDS 35.0%
ACTTAGAAACCGTTGAATGA+AGG + chr2_3:1342964-1342983 None:intergenic 35.0%
!!! CTGTTTTGAGGCTAACATTT+TGG + chr2_3:1343330-1343349 None:intergenic 35.0%
! CAAAATGTTAGCCTCAAAAC+AGG - chr2_3:1343328-1343347 Msa0270050:CDS 35.0%
TTGTTCTTGAAGCTTCGAAA+AGG + chr2_3:1343398-1343417 None:intergenic 35.0%
!!! GCATCTTTTTCAGTTGAAGA+TGG - chr2_3:1343439-1343458 Msa0270050:CDS 35.0%
AGACATCACACAAAAGTTGA+AGG - chr2_3:1343472-1343491 Msa0270050:CDS 35.0%
GCTTATAATTCCTTCATGAG+GGG + chr2_3:1343518-1343537 None:intergenic 35.0%
CAGCTTATAATTCCTTCATG+AGG + chr2_3:1343520-1343539 None:intergenic 35.0%
! TGTCACCAGTTTGAATTTTC+TGG - chr2_3:1343544-1343563 Msa0270050:CDS 35.0%
CTGGCACATTGTAATGAAAT+TGG + chr2_3:1343832-1343851 None:intergenic 35.0%
CAGTCATCATAGATTCCTAA+TGG + chr2_3:1343866-1343885 None:intergenic 35.0%
TATTTGCATTCTATCAGCCA+TGG - chr2_3:1344131-1344150 Msa0270050:five_prime_UTR 35.0%
! TCTCCTCTTTTTATTGACCA+TGG + chr2_3:1344151-1344170 None:intergenic 35.0%
TGGTCAATAAAAAGAGGAGA+CGG - chr2_3:1344151-1344170 Msa0270050:five_prime_UTR 35.0%
!! GCGTTTTAGACTTTAGAGAG+AGG - chr2_3:1340593-1340612 Msa0270050:three_prime_UTR 40.0%
! GACTTTAGAGAGAGGAAACA+TGG - chr2_3:1340601-1340620 Msa0270050:three_prime_UTR 40.0%
TGCGAAGCGAATTGATTGTT+AGG - chr2_3:1340658-1340677 Msa0270050:three_prime_UTR 40.0%
GCGAAGCGAATTGATTGTTA+GGG - chr2_3:1340659-1340678 Msa0270050:three_prime_UTR 40.0%
TATGTAGAGAGGAAAGTGAC+TGG + chr2_3:1340688-1340707 None:intergenic 40.0%
ATAATGTCTGAAGAGGTAGC+AGG - chr2_3:1340969-1340988 Msa0270050:CDS 40.0%
TCATCAAACCACACTCCATT+TGG - chr2_3:1341121-1341140 Msa0270050:CDS 40.0%
GGAAACATTTGACCGATGTA+TGG + chr2_3:1341188-1341207 None:intergenic 40.0%
!!! TCCCTGTTTTGGCAAACATA+AGG + chr2_3:1341577-1341596 None:intergenic 40.0%
CTAAACGGTTGTTTGCATCA+AGG + chr2_3:1341796-1341815 None:intergenic 40.0%
TACTGCAAGATGAAACTGTC+CGG - chr2_3:1341978-1341997 Msa0270050:CDS 40.0%
ATTAACAACCTTTATGGCCC+AGG + chr2_3:1342011-1342030 None:intergenic 40.0%
GTCTTGGATATACCAAATGG+AGG - chr2_3:1342184-1342203 Msa0270050:intron 40.0%
TAGTAGCAAAGTTTCCGTCT+TGG - chr2_3:1342697-1342716 Msa0270050:intron 40.0%
! AGAACAGCATTGAACCAAGA+CGG + chr2_3:1342714-1342733 None:intergenic 40.0%
TCTTGGTTCAATGCTGTTCT+AGG - chr2_3:1342714-1342733 Msa0270050:intron 40.0%
TCAGTTGACGACTTTGAACT+AGG - chr2_3:1342789-1342808 Msa0270050:CDS 40.0%
!! CTAAGAAGCCATTTTCTTGC+GGG - chr2_3:1342903-1342922 Msa0270050:CDS 40.0%
TAGTCATTCCCGCAAGAAAA+TGG + chr2_3:1342914-1342933 None:intergenic 40.0%
!! ATTTTGGAGATTCTGCTGCA+TGG + chr2_3:1343314-1343333 None:intergenic 40.0%
TGAAGCTTCGAAAAGGCAAA+AGG + chr2_3:1343391-1343410 None:intergenic 40.0%
GCTTCAAGAACAACTTGTGT+TGG - chr2_3:1343405-1343424 Msa0270050:CDS 40.0%
CATCACACAAAAGTTGAAGG+AGG - chr2_3:1343475-1343494 Msa0270050:CDS 40.0%
! TCTCTGAGAGTTCTTTCAAC+AGG - chr2_3:1343583-1343602 Msa0270050:CDS 40.0%
GAGACAGAAGAATGGAAACT+TGG + chr2_3:1343795-1343814 None:intergenic 40.0%
TCTTATGCGAGACAGAAGAA+TGG + chr2_3:1343803-1343822 None:intergenic 40.0%
!! CCTAATGGTAGAAGTATCTC+TGG + chr2_3:1343851-1343870 None:intergenic 40.0%
CCAGAGATACTTCTACCATT+AGG - chr2_3:1343848-1343867 Msa0270050:intron 40.0%
GGAATCTATGATGACTGAAC+TGG - chr2_3:1343869-1343888 Msa0270050:intron 40.0%
CAGCCATGGTCAATAAAAAG+AGG - chr2_3:1344145-1344164 Msa0270050:five_prime_UTR 40.0%
CAATAAAAAGAGGAGACGGT+TGG - chr2_3:1344155-1344174 Msa0270050:five_prime_UTR 40.0%
GTAAATTCACGAGTGTGGTG+TGG + chr2_3:1340800-1340819 None:intergenic 45.0%
TGATCCCTCTGACCAACATT+TGG - chr2_3:1341046-1341065 Msa0270050:CDS 45.0%
GATCCCTCTGACCAACATTT+GGG - chr2_3:1341047-1341066 Msa0270050:CDS 45.0%
TGGAGTGTGGTTTGATGAGA+AGG + chr2_3:1341119-1341138 None:intergenic 45.0%
TCAAACCACACTCCATTTGG+TGG - chr2_3:1341124-1341143 Msa0270050:CDS 45.0%
! TTGTTGTTGGGTCCACCAAA+TGG + chr2_3:1341139-1341158 None:intergenic 45.0%
TCATAAGCAGCATCGTGAGT+GGG + chr2_3:1341209-1341228 None:intergenic 45.0%
! ACTCATTTTGCCAAGACCTG+CGG - chr2_3:1341236-1341255 Msa0270050:CDS 45.0%
ATTAGACGTCATCGTACCGA+AGG - chr2_3:1341266-1341285 Msa0270050:CDS 45.0%
CATCGTACCGAAGGAAAAGA+CGG - chr2_3:1341275-1341294 Msa0270050:CDS 45.0%
! TACTTTGTTTGTCACCGTGC+TGG - chr2_3:1341323-1341342 Msa0270050:CDS 45.0%
!! GTTTGGGTTGATGATTTGGC+AGG + chr2_3:1341356-1341375 None:intergenic 45.0%
ATCTTCCAGATGTGGTTGTC+AGG - chr2_3:1341397-1341416 Msa0270050:CDS 45.0%
ATAAGCCTGACAACCACATC+TGG + chr2_3:1341405-1341424 None:intergenic 45.0%
GGAAGGAATCGAACTTGGTT+TGG + chr2_3:1341515-1341534 None:intergenic 45.0%
ATGCAGGAAGGAATCGAACT+TGG + chr2_3:1341520-1341539 None:intergenic 45.0%
TGATATCTTCGGTGATGCTG+TGG - chr2_3:1341856-1341875 Msa0270050:CDS 45.0%
TATGGAATGCCCTGCTTCTT+TGG - chr2_3:1341947-1341966 Msa0270050:CDS 45.0%
!! AAACTGTCCGGTCATTTTCC+TGG - chr2_3:1341990-1342009 Msa0270050:CDS 45.0%
!! AACTGTCCGGTCATTTTCCT+GGG - chr2_3:1341991-1342010 Msa0270050:CDS 45.0%
TTATGGCCCAGGAAAATGAC+CGG + chr2_3:1342000-1342019 None:intergenic 45.0%
!! GTCATTTTCCTGGGCCATAA+AGG - chr2_3:1342000-1342019 Msa0270050:CDS 45.0%
CCTAAGAAAGCCTACCAAGA+AGG + chr2_3:1342564-1342583 None:intergenic 45.0%
CCTTCTTGGTAGGCTTTCTT+AGG - chr2_3:1342561-1342580 Msa0270050:intron 45.0%
TAGGTGAACGCTACAATGAC+TGG - chr2_3:1342733-1342752 Msa0270050:CDS 45.0%
TGAACGCTACAATGACTGGA+AGG - chr2_3:1342737-1342756 Msa0270050:CDS 45.0%
TTGACGACTTTGAACTAGGC+TGG - chr2_3:1342793-1342812 Msa0270050:CDS 45.0%
! AGGGAGATGGTCTGTTCTTT+TGG - chr2_3:1342816-1342835 Msa0270050:CDS 45.0%
! GGGAGATGGTCTGTTCTTTT+GGG - chr2_3:1342817-1342836 Msa0270050:CDS 45.0%
TATATAGCTCGCGCTCACTT+TGG - chr2_3:1342868-1342887 Msa0270050:CDS 45.0%
ATATAGCTCGCGCTCACTTT+GGG - chr2_3:1342869-1342888 Msa0270050:CDS 45.0%
GGTTTCTAAGTGCACAGACA+CGG - chr2_3:1342973-1342992 Msa0270050:CDS 45.0%
GCTTGCTCACTTTGTTGAAC+AGG - chr2_3:1342995-1343014 Msa0270050:CDS 45.0%
! TTTGGTTCGCTTTGCACAAC+AGG - chr2_3:1343243-1343262 Msa0270050:CDS 45.0%
TCGAAAAGGCAAAAGGAGTG+AGG + chr2_3:1343384-1343403 None:intergenic 45.0%
GGATGGGAAGATATGCATCT+GGG + chr2_3:1343624-1343643 None:intergenic 45.0%
ATGCATATCTTCCCATCCGA+TGG - chr2_3:1343626-1343645 Msa0270050:CDS 45.0%
ATGACTGAACTGGCAATGTG+TGG - chr2_3:1343879-1343898 Msa0270050:intron 45.0%
CAATGTGTGGTTCGATGAAC+AGG - chr2_3:1343892-1343911 Msa0270050:intron 45.0%
ATATCAACGCTCCTTCCTCA+AGG - chr2_3:1343967-1343986 Msa0270050:intron 45.0%
ATGTCTGAAGAGGTAGCAGG+TGG - chr2_3:1340972-1340991 Msa0270050:CDS 50.0%
CCTCCCAAATGTTGGTCAGA+GGG + chr2_3:1341053-1341072 None:intergenic 50.0%
TCCTCCCAAATGTTGGTCAG+AGG + chr2_3:1341054-1341073 None:intergenic 50.0%
TCTGACCAACATTTGGGAGG+AGG - chr2_3:1341053-1341072 Msa0270050:CDS 50.0%
GTCATAAGCAGCATCGTGAG+TGG + chr2_3:1341210-1341229 None:intergenic 50.0%
AATAGAGAAGCCGCAGGTCT+TGG + chr2_3:1341249-1341268 None:intergenic 50.0%
ACGTCTAATAGAGAAGCCGC+AGG + chr2_3:1341255-1341274 None:intergenic 50.0%
ACCGAAGGAAAAGACGGTGT+TGG - chr2_3:1341281-1341300 Msa0270050:CDS 50.0%
! GCCAACACCGTCTTTTCCTT+CGG + chr2_3:1341285-1341304 None:intergenic 50.0%
!! GGAAAAGACGGTGTTGGCAA+AGG - chr2_3:1341287-1341306 Msa0270050:CDS 50.0%
! TTCTGGAGGCCCAAATTCAG+TGG + chr2_3:1341444-1341463 None:intergenic 50.0%
CTGAATTTGGGCCTCCAGAA+TGG - chr2_3:1341444-1341463 Msa0270050:CDS 50.0%
ACTGCATTTGACATGCCGCT+GGG - chr2_3:1341902-1341921 Msa0270050:CDS 50.0%
AGCACACAGCCAAAGAAGCA+GGG + chr2_3:1341959-1341978 None:intergenic 50.0%
TAGCACACAGCCAAAGAAGC+AGG + chr2_3:1341960-1341979 None:intergenic 50.0%
CAAATTGTGTTGTGGCCCCT+TGG - chr2_3:1342070-1342089 Msa0270050:CDS 50.0%
!! TGGTGAAGGTACTTCAGCTG+TGG - chr2_3:1342440-1342459 Msa0270050:intron 50.0%
ACGACTTTGAACTAGGCTGG+AGG - chr2_3:1342796-1342815 Msa0270050:CDS 50.0%
CGACTTTGAACTAGGCTGGA+GGG - chr2_3:1342797-1342816 Msa0270050:CDS 50.0%
CTTGCGGGAATGACTACAAC+TGG - chr2_3:1342918-1342937 Msa0270050:CDS 50.0%
AAGGAGGTCGCAGAGTTTAC+TGG - chr2_3:1343491-1343510 Msa0270050:CDS 50.0%
GTTTACTGGTCCCCTCATGA+AGG - chr2_3:1343505-1343524 Msa0270050:CDS 50.0%
CGGATGGGAAGATATGCATC+TGG + chr2_3:1343625-1343644 None:intergenic 50.0%
ACTCTTTCGGCATGATCGCT+AGG + chr2_3:1343694-1343713 None:intergenic 50.0%
TGTGTGGTTCGATGAACAGG+TGG - chr2_3:1343895-1343914 Msa0270050:intron 50.0%
GGTAGCAGGTGGATCCATGT+TGG - chr2_3:1340983-1341002 Msa0270050:CDS 55.0%
CCCTCTGACCAACATTTGGG+AGG - chr2_3:1341050-1341069 Msa0270050:CDS 55.0%
GACCAACATTTGGGAGGAGG+AGG - chr2_3:1341056-1341075 Msa0270050:CDS 55.0%
CACCTCCTCCTCCCAAATGT+TGG + chr2_3:1341061-1341080 None:intergenic 55.0%
CAACATTTGGGAGGAGGAGG+TGG - chr2_3:1341059-1341078 Msa0270050:CDS 55.0%
TGGGTCCACCAAATGGAGTG+TGG + chr2_3:1341132-1341151 None:intergenic 55.0%
AAACCAGTGACGCGCCATTC+TGG + chr2_3:1341461-1341480 None:intergenic 55.0%
! CTTGAGAAGTGCGTCGAACC+TGG - chr2_3:1341629-1341648 Msa0270050:intron 55.0%
GATGGATGAGGCATACGACC+AGG + chr2_3:1341828-1341847 None:intergenic 55.0%
CACTGCATTTGACATGCCGC+TGG - chr2_3:1341901-1341920 Msa0270050:CDS 55.0%
CTGCATTTGACATGCCGCTG+GGG - chr2_3:1341903-1341922 Msa0270050:CDS 55.0%
TTGACATGCCGCTGGGGATA+TGG - chr2_3:1341909-1341928 Msa0270050:CDS 55.0%
TGACATGCCGCTGGGGATAT+GGG - chr2_3:1341910-1341929 Msa0270050:CDS 55.0%
ATCCCAACCCATATCCCCAG+CGG + chr2_3:1341920-1341939 None:intergenic 55.0%
! TGGTGAAGGTACGTCAGCTG+TGG - chr2_3:1342303-1342322 Msa0270050:intron 55.0%
TGAACTAGGCTGGAGGGAGA+TGG - chr2_3:1342803-1342822 Msa0270050:CDS 55.0%
TAGCAGCGTGCGATTCCATG+GGG + chr2_3:1343357-1343376 None:intergenic 55.0%
GTAGCAGCGTGCGATTCCAT+GGG + chr2_3:1343358-1343377 None:intergenic 55.0%
CATGGAATCGCACGCTGCTA+CGG - chr2_3:1343357-1343376 Msa0270050:CDS 55.0%
CTGATACGACGCCATCGGAT+GGG + chr2_3:1343640-1343659 None:intergenic 55.0%
ACTGATACGACGCCATCGGA+TGG + chr2_3:1343641-1343660 None:intergenic 55.0%
GCACACTGATACGACGCCAT+CGG + chr2_3:1343645-1343664 None:intergenic 55.0%
TCAACGCTCCTTCCTCAAGG+TGG - chr2_3:1343970-1343989 Msa0270050:intron 55.0%
CAACGCTCCTTCCTCAAGGT+GGG - chr2_3:1343971-1343990 Msa0270050:intron 55.0%
AACGCTCCTTCCTCAAGGTG+GGG - chr2_3:1343972-1343991 Msa0270050:intron 55.0%
CATTTGGGAGGAGGAGGTGG+AGG - chr2_3:1341062-1341081 Msa0270050:CDS 60.0%
!! TGGCAGGAGTGTTGCCAGCA+CGG + chr2_3:1341340-1341359 None:intergenic 60.0%
ATGCCGCTGGGGATATGGGT+TGG - chr2_3:1341914-1341933 Msa0270050:CDS 60.0%
TGCCGCTGGGGATATGGGTT+GGG - chr2_3:1341915-1341934 Msa0270050:CDS 60.0%
! CCATGGGGGCTCCTGTTTTG+AGG + chr2_3:1343342-1343361 None:intergenic 60.0%
CCTCAAAACAGGAGCCCCCA+TGG - chr2_3:1343339-1343358 Msa0270050:CDS 60.0%
AGCAGCGTGCGATTCCATGG+GGG + chr2_3:1343356-1343375 None:intergenic 60.0%
CGTAGCAGCGTGCGATTCCA+TGG + chr2_3:1343359-1343378 None:intergenic 60.0%
TGAAACGACGCCCCACCTTG+AGG + chr2_3:1343985-1344004 None:intergenic 60.0%
TTGGGAGGAGGAGGTGGAGG+AGG - chr2_3:1341065-1341084 Msa0270050:CDS 65.0%
CCAGTGACGCGCCATTCTGG+AGG + chr2_3:1341458-1341477 None:intergenic 65.0%
CCTCCAGAATGGCGCGTCAC+TGG - chr2_3:1341455-1341474 Msa0270050:CDS 65.0%
ACGACGCCCCACCTTGAGGA+AGG + chr2_3:1343981-1344000 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 1340567 1344185 1340567 ID=Msa0270050;Name=Msa0270050
chr2_3 mRNA 1340567 1344185 1340567 ID=Msa0270050-mRNA-1;Parent=Msa0270050;Name=Msa0270050-mRNA-1;_AED=0.09;_eAED=0.09;_QI=167|1|1|1|0.66|0.5|4|306|702
chr2_3 exon 1340567 1341487 1340567 ID=Msa0270050-mRNA-1:exon:573;Parent=Msa0270050-mRNA-1
chr2_3 exon 1341736 1342179 1341736 ID=Msa0270050-mRNA-1:exon:572;Parent=Msa0270050-mRNA-1
chr2_3 exon 1342731 1343794 1342731 ID=Msa0270050-mRNA-1:exon:571;Parent=Msa0270050-mRNA-1
chr2_3 exon 1344033 1344185 1344033 ID=Msa0270050-mRNA-1:exon:570;Parent=Msa0270050-mRNA-1
chr2_3 five_prime_UTR 1344033 1344185 1344033 ID=Msa0270050-mRNA-1:five_prime_utr;Parent=Msa0270050-mRNA-1
chr2_3 five_prime_UTR 1343781 1343794 1343781 ID=Msa0270050-mRNA-1:five_prime_utr;Parent=Msa0270050-mRNA-1
chr2_3 CDS 1342731 1343780 1342731 ID=Msa0270050-mRNA-1:cds;Parent=Msa0270050-mRNA-1
chr2_3 CDS 1341736 1342179 1341736 ID=Msa0270050-mRNA-1:cds;Parent=Msa0270050-mRNA-1
chr2_3 CDS 1340873 1341487 1340873 ID=Msa0270050-mRNA-1:cds;Parent=Msa0270050-mRNA-1
chr2_3 three_prime_UTR 1340567 1340872 1340567 ID=Msa0270050-mRNA-1:three_prime_utr;Parent=Msa0270050-mRNA-1
Gene Sequence

>Msa0270050

ATGTCTGAAGAGGTAGCAGGTGGATCCATGTTGGTAGTTTATGATGACGATGATATTGATGTTGATGTTGACGATGATCCCTCTGACCAACATTTGGGAGGAGGAGGTGGAGGAGGATGCGATACAAGCAGCACAGAAGACTCTCCTTCTCATCAAACCACACTCCATTTGGTGGACCCAACAACAACAACAACAACAACTCATCATCACATTCCATACATCGGTCAAATGTTTCCCACTCACGATGCTGCTTATGACTTCTATACTCATTTTGCCAAGACCTGCGGCTTCTCTATTAGACGTCATCGTACCGAAGGAAAAGACGGTGTTGGCAAAGGACTTACTAGACGCTACTTTGTTTGTCACCGTGCTGGCAACACTCCTGCCAAATCATCAACCCAAACTAAGCCTCAACGAAATAGAAAATCTTCCAGATGTGGTTGTCAGGCTTATATGCGCATAAGCAAAACCACTGAATTTGGGCCTCCAGAATGGCGCGTCACTGGTTTTGCCAACCACCATAATCATGAACTTTTGGAACCAAACCAAGTTCGATTCCTTCCTGCATACAGAACTATATCAGATGCTGACAAAAATCGGATCCTTATGTTTGCCAAAACAGGGATTTCTGTTCATCAAATGATGAGACTTATGGAGCTTGAGAAGTGCGTCGAACCTGGATATTTGCCTTTTACTGAAAAGGACGTAAGGAATTTACTCCAGTCATTTAGAAAATTAGATCCAGAAGAAGAAACCCTAGATTTGTTAAGAATGTGCAGAAATATTAAGGACAAAGATCCTAATTTTAAATTTGAGTACACCCTTGATGCAAACAACCGTTTAGAAAATATTGCCTGGTCGTATGCCTCATCCATCCAATTGTATGATATCTTCGGTGATGCTGTGGTGTTTGATACAACACATCGTCTCACTGCATTTGACATGCCGCTGGGGATATGGGTTGGGATAAATAATTATGGAATGCCCTGCTTCTTTGGCTGTGTGCTACTGCAAGATGAAACTGTCCGGTCATTTTCCTGGGCCATAAAGGCTTTCTTAGGTTTTATGAATGGGAAGGCTCCACAGACTATATTAACTGATCAAAACATTTGTCTCAAAGAAGCACTATCTGCAGAAATGCTGATGACAAAACATGCTTTCTGCATATGGATGATAGTAGCAAAGTTTCCGTCTTGGTTCAATGCTGTTCTAGGTGAACGCTACAATGACTGGAAGGCTGAGTTTTATAGACTTTATAATCTTGAATCAGTTGACGACTTTGAACTAGGCTGGAGGGAGATGGTCTGTTCTTTTGGGCTGCATTCCAATCGACACATTGTTAATTTATATAGCTCGCGCTCACTTTGGGCATTGCCATATCTAAGAAGCCATTTTCTTGCGGGAATGACTACAACTGGTCAGTCAAAGTCAATTAACGCCTTCATTCAACGGTTTCTAAGTGCACAGACACGGCTTGCTCACTTTGTTGAACAGGCAGCTGTTGCTGTTGATTTTAAAGATCAAACTGGTGAACAACAAACCATGCAGCAGAATCTCCAAAATGTTAGCCTCAAAACAGGAGCCCCCATGGAATCGCACGCTGCTACGGTCCTCACTCCTTTTGCCTTTTCGAAGCTTCAAGAACAACTTGTGTTGGCTGCACATTATGCATCTTTTTCAGTTGAAGATGGTTTTCTTGTGAGACATCACACAAAAGTTGAAGGAGGTCGCAGAGTTTACTGGTCCCCTCATGAAGGAATTATAAGCTGCAGCTGTCACCAGTTTGAATTTTCTGGAATTTTGTGTAGGCACTCTCTGAGAGTTCTTTCAACAGGAAATTGCTTTCAAATCCCAGATGCATATCTTCCCATCCGATGGCGTCGTATCAGTGTGCCTTCTTCTAAGATTCTTCAAAATGCACCTAGCGATCATGCCGAAAGAGTTAAGCTATTCCAAAATATGGTTTCATCTCTAATTACAGAATCTGCCAAGTCTAAAGAACGATTAGATATGGCAACAGACCAAGTTTCCATTCTTCTGTCTCGCATAAGAGAGCAACCAATTTCATTACAATGTGCCAGAGATACTTCTACCATTAGGAATCTATGA
Protein sequence

>Msa0270050

MSEEVAGGSMLVVYDDDDIDVDVDDDPSDQHLGGGGGGGCDTSSTEDSPSHQTTLHLVDPTTTTTTTHHHIPYIGQMFPTHDAAYDFYTHFAKTCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPAKSSTQTKPQRNRKSSRCGCQAYMRISKTTEFGPPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEETLDLLRMCRNIKDKDPNFKFEYTLDANNRLENIAWSYASSIQLYDIFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCVLLQDETVRSFSWAIKAFLGFMNGKAPQTILTDQNICLKEALSAEMLMTKHAFCIWMIVAKFPSWFNAVLGERYNDWKAEFYRLYNLESVDDFELGWREMVCSFGLHSNRHIVNLYSSRSLWALPYLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQAAVAVDFKDQTGEQQTMQQNLQNVSLKTGAPMESHAATVLTPFAFSKLQEQLVLAAHYASFSVEDGFLVRHHTKVEGGRRVYWSPHEGIISCSCHQFEFSGILCRHSLRVLSTGNCFQIPDAYLPIRWRRISVPSSKILQNAPSDHAERVKLFQNMVSSLITESAKSKERLDMATDQVSILLSRIREQPISLQCARDTSTIRNL*