AlfalfaGEDB | Msa1392310

M. sativa cultivar zhongmu-4 / Msa1392310

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1392310	XP_024631917.1	97.866	703	11	2	1	702	1	700	0.0	1447

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1392310	sp\|Q9SY66\|FRS11_ARATH	75.398	691	148	3	8	698	6	674	0.0	1118

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1392310	A0A396J3X5	97.866	703	11	2	1	702	1	700	0.0	1447

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TFs/TRs:

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Gene ID	Type	Classification
Msa1392310	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0270050	Msa1392310	0.806196	9.250612e-50	-8.615850e-47
Msa1351660	Msa1392310	0.838562	2.672140e-57	-8.615850e-47
Msa1375040	Msa1392310	0.993727	8.818527e-202	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1392310	MtrunA17_Chr2g0276841	97.866	703	11	2	1	702	1	700	0.0	1447
Msa1392310	MtrunA17_Chr2g0294841	57.871	667	258	5	41	697	22	675	0.0	808
Msa1392310	MtrunA17_Chr1g0198761	46.308	650	327	7	57	687	21	667	0.0	610
Msa1392310	MtrunA17_Chr2g0290391	43.109	624	335	5	72	683	51	666	0.0	535
Msa1392310	MtrunA17_Chr5g0431001	49.087	438	218	2	59	491	48	485	1.70e-154	457
Msa1392310	MtrunA17_Chr5g0448761	29.338	634	417	14	72	683	60	684	7.04e-79	268
Msa1392310	MtrunA17_Chr2g0329031	27.014	633	425	16	78	701	20	624	6.29e-74	253
Msa1392310	MtrunA17_Chr1g0202341	28.169	568	385	10	72	628	51	606	4.52e-71	244
Msa1392310	MtrunA17_Chr1g0207551	29.373	606	363	15	72	649	34	602	6.93e-71	246
Msa1392310	MtrunA17_Chr5g0440451	29.310	580	362	12	72	626	43	599	3.76e-66	235

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1392310	AT1G10240.2	75.398	691	148	3	8	698	6	674	0.0	1118
Msa1392310	AT1G10240.1	75.398	691	148	3	8	698	6	674	0.0	1118
Msa1392310	AT5G28530.1	42.072	637	352	6	60	684	43	674	5.99e-175	516
Msa1392310	AT5G28530.3	42.072	637	348	6	60	684	43	670	1.25e-174	515
Msa1392310	AT5G28530.2	42.072	637	348	6	60	684	43	670	1.25e-174	515
Msa1392310	AT5G28530.4	38.596	627	325	8	60	684	43	611	7.86e-142	429
Msa1392310	AT5G28530.5	38.596	627	321	8	60	684	43	607	1.72e-141	428
Msa1392310	AT4G38180.1	29.750	679	440	13	15	673	22	683	2.08e-83	280
Msa1392310	AT4G15090.1	29.194	620	402	14	72	672	51	652	2.91e-75	259
Msa1392310	AT4G15090.5	29.194	620	402	14	72	672	51	652	2.91e-75	259

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Find 173 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGTGACGCGCCATTC+TGG	0.316021	tig0021492:-88294	None:intergenic
AAATCTAGGGTTTCTTCTTC+TGG	0.296205	tig0021492:-88549	None:intergenic
AAATTCCAGAAAATTCAAAC+TGG	0.489969	tig0021492:-90385	None:intergenic
AACGCTCCTTCCTCAAGGTG+GGG	0.573030	tig0021492:+90808	Msa1392310:three_prime_UTR
AAGAATGTGCAGAAATAGTA+AGG	0.475772	tig0021492:+88575	Msa1392310:CDS
AAGGAGGTCGCAGAGTTTAC+TGG	0.359371	tig0021492:+90327	Msa1392310:CDS
AAGTTCATGATTATGGTGGT+TGG	0.589394	tig0021492:-88319	None:intergenic
AATAGAAAATCTTCCAGATG+TGG	0.584217	tig0021492:+88225	Msa1392310:CDS
AATAGAGAAGCCGCAGGTCT+TGG	0.423335	tig0021492:-88082	None:intergenic
ACCGAAGGAAAAGACGGTGT+TGG	0.619616	tig0021492:+88117	Msa1392310:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAATGTATGTATGTAGAG+AGG	-	tig0021492:87529-87548	None:intergenic	30.0%
ACTACTACTACTACTACATA+CGG	-	tig0021492:87693-87712	None:intergenic	30.0%
AATAGAAAATCTTCCAGATG+TGG	+	tig0021492:88225-88244	Msa1392310:CDS	30.0%
ATAAGCAAAACCACTGAATT+TGG	+	tig0021492:88267-88286	Msa1392310:CDS	30.0%
TAAGCAAAACCACTGAATTT+GGG	+	tig0021492:88268-88287	Msa1392310:CDS	30.0%
GTTCCAAAAGTTCATGATTA+TGG	-	tig0021492:88329-88348	None:intergenic	30.0%
TATCAGATGCTGACAAAAAT+CGG	+	tig0021492:88385-88404	Msa1392310:CDS	30.0%
TCATCAAATGATGAGACTTA+TGG	+	tig0021492:88440-88459	Msa1392310:CDS	30.0%
GCACATTCTTAACAAATCTA+GGG	-	tig0021492:88565-88584	None:intergenic	30.0%
TGCACATTCTTAACAAATCT+AGG	-	tig0021492:88566-88585	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0021492	gene	87397	91021	87397	ID=Msa1392310;Name=Msa1392310
tig0021492	mRNA	87397	91021	87397	ID=Msa1392310-mRNA-1;Parent=Msa1392310;Name=Msa1392310-mRNA-1;_AED=0.09;_eAED=0.09;_QI=167\|1\|1\|1\|0.66\|0.5\|4\|306\|702
tig0021492	exon	87397	87549	87397	ID=Msa1392310-mRNA-1:exon:13082;Parent=Msa1392310-mRNA-1
tig0021492	exon	87794	88857	87794	ID=Msa1392310-mRNA-1:exon:13083;Parent=Msa1392310-mRNA-1
tig0021492	exon	89409	89852	89409	ID=Msa1392310-mRNA-1:exon:13084;Parent=Msa1392310-mRNA-1
tig0021492	exon	90101	91021	90101	ID=Msa1392310-mRNA-1:exon:13085;Parent=Msa1392310-mRNA-1
tig0021492	five_prime_UTR	87397	87549	87397	ID=Msa1392310-mRNA-1:five_prime_utr;Parent=Msa1392310-mRNA-1
tig0021492	five_prime_UTR	87794	87807	87794	ID=Msa1392310-mRNA-1:five_prime_utr;Parent=Msa1392310-mRNA-1
tig0021492	CDS	87808	88857	87808	ID=Msa1392310-mRNA-1:cds;Parent=Msa1392310-mRNA-1
tig0021492	CDS	89409	89852	89409	ID=Msa1392310-mRNA-1:cds;Parent=Msa1392310-mRNA-1
tig0021492	CDS	90101	90715	90101	ID=Msa1392310-mRNA-1:cds;Parent=Msa1392310-mRNA-1
tig0021492	three_prime_UTR	90716	91021	90716	ID=Msa1392310-mRNA-1:three_prime_utr;Parent=Msa1392310-mRNA-1

Gene Sequence

>Msa1392310

ATGTCTGAAGAGGTAGCAGGTGGATCCATGTTGGTAGTTTATGATGACGATGATATTGATGTTGATGTTGACGATGATCCCTCTGACCAACATTTGGGAGGAGGAGGTGGAGGAGGATGCGATACAAGCAGCACAGAAGACTCTCCTTCTCATCAAACCACACTCCATTTGGTGGACCCAACAACAACAACAACAACAACTCATCATCACATTCCATACATCGGTCAAATGTTTCCCACTCACGATGCTGCTTATGACTTCTATACTCATTTTGCCAAGACCTGCGGCTTCTCTATTAGACGTCATCGTACCGAAGGAAAAGACGGTGTTGGCAAAGGACTTACTAGACGCTACTTTGTTTGTCACCGTGCTGGCAACACTCCTGCCAAATCATCAACCCAAACTAAGCCTCAACGAAATAGAAAATCTTCCAGATGTGGTTGTCAGGCTTATATGCGCATAAGCAAAACCACTGAATTTGGGCCTCCAGAATGGCGCGTCACTGGTTTTGCCAACCACCATAATCATGAACTTTTGGAACCAAACCAAGTTCGATTCCTTCCTGCATACAGAACTATATCAGATGCTGACAAAAATCGGATCCTTATGTTTGCCAAAACAGGGATTTCTGTTCATCAAATGATGAGACTTATGGAGCTTGAGAAGTGCGTCGAACCTGGATATTTGCCTTTTACTGAAAAGGACGTAAGGAATTTACTCCAGTCATTTAGAAAATTAGATCCAGAAGAAGAAACCCTAGATTTGTTAAGAATGTGCAGAAATAGTAAGGACAAAGATCCTAATTTTAAATTTGAGTACACCCTTGATGCAAACAACCGTTTAGAAAATATTGCCTGGTCGTATGCCTCATCCATCCAATTGTATGATATCTTCGGTGATGCTGTGGTGTTTGATACAACACATCGTCTCACTGCATTTGACATGCCGCTGGGGATATGGGTTGGGATAAATAATTATGGAATGCCCTGCTTCTTTGGCTGTGTGCTACTGCAAGATGAAACTGTCCGGTCATTTTCCTGGGCCATAAAGGCTTTCTTAGGTTTTATGAATGGGAAGGCTCCACAGACTATATTAACTGATCAAAATATTTGTCTCAAAGAAGCACTATCTGCAGAAATGCTGATGACAAAACATGCTTTCTGCATATGGATGATAGTAGCAAAGTTTCCGTCTTGGTTCAATGCTGTTCTAGGTGAACGCTACAATGACTGGAAGGCTGAGTTTTATAGACTTTATAATCTTGAATCAGTTGACGACTTTGAACTAGGCTGGAGGGAGATGGTCTGTTCTTTTGGGCTGCATTCCAATCGACACATTGTTAATTTATATAGCTCGCGCTCACTTTGGGCATTGCCATATCTAAGAAGCCATTTTCTTGCGGGAATGACTACAACTGGTCAGTCAAAGTCAATTAACGCCTTCATTCAACGGTTTCTAAGTGCACAGACACGGCTTGCTCACTTTGTTGAACAGGCAGCTGTTGCTGTTGATTTTAAAGATCAAACTGGTGAACAACAAACCATGCAGCAGAATCTCCAAAATGTTAGCCTCAAAACAGGAGCCCCCATGGAATCGCACGCTGCTACGGTCCTCACTCCTTTTGCCTTTTCGAAGCTTCAAGAACAACTTGTGTTGGCTGCACATTATGCATCTTTTTCAGTTGAAGATGGTTTTCTTGTGAGACATCACACAAAAGTTGAAGGAGGTCGCAGAGTTTACTGGTCCCCTCATGAAGGAATTATAAGCTGCAGCTGTCACCAGTTTGAATTTTCTGGAATTTTGTGTAGGCACTCTCTGAGAGTTCTTTCAACAGGAAATTGCTTTCAAATCCCAGATGCATATCTTCCCATCCGATGGCGTCGTATCAGTGTGCCTTCTTCTAAGATTCTTCAAAATGCACCTAGCGATCATGCCGAAAGAGTTAAGCTATTCCAAAATATGGTTTCATCTCTAATTACAGAATCTGCCAAGTCTAAAGAACGATTAGATATGGCAACAGACCAAGTTTCCATTCTTCTGTCTCGCATAAGAGAGCAACCAATTTCATTACAATGTGCCAGAGATACTTCTACCATTAGGAATCTATGA

Protein sequence

>Msa1392310

MSEEVAGGSMLVVYDDDDIDVDVDDDPSDQHLGGGGGGGCDTSSTEDSPSHQTTLHLVDPTTTTTTTHHHIPYIGQMFPTHDAAYDFYTHFAKTCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPAKSSTQTKPQRNRKSSRCGCQAYMRISKTTEFGPPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEETLDLLRMCRNSKDKDPNFKFEYTLDANNRLENIAWSYASSIQLYDIFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCVLLQDETVRSFSWAIKAFLGFMNGKAPQTILTDQNICLKEALSAEMLMTKHAFCIWMIVAKFPSWFNAVLGERYNDWKAEFYRLYNLESVDDFELGWREMVCSFGLHSNRHIVNLYSSRSLWALPYLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQAAVAVDFKDQTGEQQTMQQNLQNVSLKTGAPMESHAATVLTPFAFSKLQEQLVLAAHYASFSVEDGFLVRHHTKVEGGRRVYWSPHEGIISCSCHQFEFSGILCRHSLRVLSTGNCFQIPDAYLPIRWRRISVPSSKILQNAPSDHAERVKLFQNMVSSLITESAKSKERLDMATDQVSILLSRIREQPISLQCARDTSTIRNL*