AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1392310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1392310 MtrunA17_Chr2g0276841 97.866 703 11 2 1 702 1 700 0.0 1447
Msa1392310 MtrunA17_Chr2g0294841 57.871 667 258 5 41 697 22 675 0.0 808
Msa1392310 MtrunA17_Chr1g0198761 46.308 650 327 7 57 687 21 667 0.0 610
Msa1392310 MtrunA17_Chr2g0290391 43.109 624 335 5 72 683 51 666 0.0 535
Msa1392310 MtrunA17_Chr5g0431001 49.087 438 218 2 59 491 48 485 1.70e-154 457
Msa1392310 MtrunA17_Chr5g0448761 29.338 634 417 14 72 683 60 684 7.04e-79 268
Msa1392310 MtrunA17_Chr2g0329031 27.014 633 425 16 78 701 20 624 6.29e-74 253
Msa1392310 MtrunA17_Chr1g0202341 28.169 568 385 10 72 628 51 606 4.52e-71 244
Msa1392310 MtrunA17_Chr1g0207551 29.373 606 363 15 72 649 34 602 6.93e-71 246
Msa1392310 MtrunA17_Chr5g0440451 29.310 580 362 12 72 626 43 599 3.76e-66 235
Msa1392310 MtrunA17_Chr3g0082121 28.042 567 380 13 70 628 41 587 8.60e-63 222
Msa1392310 MtrunA17_Chr2g0296781 28.152 579 360 20 78 628 3 553 3.02e-62 221
Msa1392310 MtrunA17_Chr3g0080351 26.332 638 405 17 72 685 76 672 2.29e-61 220
Msa1392310 MtrunA17_Chr2g0287651 26.655 574 373 15 78 628 81 629 1.03e-59 216
Msa1392310 MtrunA17_Chr5g0441581 27.700 574 373 14 72 628 32 580 4.50e-59 211
Msa1392310 MtrunA17_Chr8g0363841 25.424 649 427 14 73 685 18 645 1.11e-58 210
Msa1392310 MtrunA17_Chr6g0458391 27.130 575 380 12 64 628 217 762 4.42e-57 207
Msa1392310 MtrunA17_Chr6g0458391 34.400 125 76 3 72 196 91 209 3.19e-13 73.2
Msa1392310 MtrunA17_Chr6g0477261 30.303 462 270 15 198 628 2 442 3.11e-56 203
Msa1392310 MtrunA17_Chr1g0203051 25.490 561 374 14 78 618 85 621 7.64e-56 201
Msa1392310 MtrunA17_Chr2g0287061 26.270 571 352 14 72 628 183 698 2.52e-55 202
Msa1392310 MtrunA17_Chr2g0324011 25.694 576 389 13 72 628 10 565 3.78e-52 190
Msa1392310 MtrunA17_Chr2g0291581 26.218 595 388 15 72 643 71 637 3.15e-51 189
Msa1392310 MtrunA17_Chr3g0118611 30.075 399 254 5 234 626 117 496 1.18e-50 189
Msa1392310 MtrunA17_Chr1g0203721 23.917 623 427 15 74 670 65 666 7.27e-49 184
Msa1392310 MtrunA17_Chr5g0448511 29.058 382 261 4 251 626 15 392 3.20e-48 178
Msa1392310 MtrunA17_Chr1g0196541 24.458 646 432 17 78 699 3 616 1.07e-47 180
Msa1392310 MtrunA17_Chr2g0291591 23.592 568 384 13 41 580 22 567 1.33e-39 154
Msa1392310 MtrunA17_Chr1g0164591 27.864 323 214 8 152 470 1 308 5.91e-34 132
Msa1392310 MtrunA17_Chr3g0081281 49.462 93 47 0 215 307 1 93 8.80e-28 107
Msa1392310 MtrunA17_Chr7g0258861 28.082 292 199 6 72 359 10 294 1.69e-25 107
Msa1392310 MtrunA17_Chr2g0308841 25.455 220 150 4 424 633 14 229 3.35e-13 70.5
Msa1392310 MtrunA17_Chr7g0233911 35.659 129 70 6 72 198 34 151 1.03e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1392310 AT1G10240.2 75.398 691 148 3 8 698 6 674 0.0 1118
Msa1392310 AT1G10240.1 75.398 691 148 3 8 698 6 674 0.0 1118
Msa1392310 AT5G28530.1 42.072 637 352 6 60 684 43 674 5.99e-175 516
Msa1392310 AT5G28530.3 42.072 637 348 6 60 684 43 670 1.25e-174 515
Msa1392310 AT5G28530.2 42.072 637 348 6 60 684 43 670 1.25e-174 515
Msa1392310 AT5G28530.4 38.596 627 325 8 60 684 43 611 7.86e-142 429
Msa1392310 AT5G28530.5 38.596 627 321 8 60 684 43 607 1.72e-141 428
Msa1392310 AT4G38180.1 29.750 679 440 13 15 673 22 683 2.08e-83 280
Msa1392310 AT4G15090.1 29.194 620 402 14 72 672 51 652 2.91e-75 259
Msa1392310 AT4G15090.5 29.194 620 402 14 72 672 51 652 2.91e-75 259
Msa1392310 AT4G15090.3 29.194 620 402 14 72 672 51 652 2.91e-75 259
Msa1392310 AT4G15090.2 29.194 620 402 14 72 672 51 652 2.91e-75 259
Msa1392310 AT4G15090.4 29.194 620 402 14 72 672 51 652 2.91e-75 259
Msa1392310 AT1G76320.3 27.288 612 401 14 78 672 3 587 1.81e-60 215
Msa1392310 AT1G76320.2 26.829 615 400 14 78 672 3 587 4.02e-60 216
Msa1392310 AT1G76320.1 26.829 615 400 14 78 672 3 587 4.99e-60 215
Msa1392310 AT1G76320.4 26.829 615 400 14 78 672 3 587 4.99e-60 215
Msa1392310 AT3G22170.2 24.611 642 392 19 72 672 70 660 1.91e-56 207
Msa1392310 AT3G22170.1 24.611 642 392 19 72 672 70 660 1.91e-56 207
Msa1392310 AT2G27110.2 25.984 635 396 18 72 685 49 630 2.15e-53 198
Msa1392310 AT2G27110.1 25.984 635 396 18 72 685 49 630 2.15e-53 198
Msa1392310 AT3G06250.2 26.690 577 338 16 72 628 190 701 4.75e-52 193
Msa1392310 AT3G06250.1 26.690 577 338 16 72 628 190 701 4.75e-52 193
Msa1392310 AT3G06250.3 26.690 577 338 16 72 628 190 701 4.75e-52 193
Msa1392310 AT1G52520.1 26.361 588 365 18 72 628 85 635 2.54e-50 187
Msa1392310 AT5G18960.2 26.923 572 346 17 72 628 211 725 2.96e-50 188
Msa1392310 AT5G18960.1 26.923 572 346 17 72 628 211 725 2.96e-50 188
Msa1392310 AT4G19990.3 26.123 601 358 15 75 643 24 570 5.35e-48 181
Msa1392310 AT4G19990.4 26.123 601 358 15 75 643 24 570 5.35e-48 181
Msa1392310 AT4G19990.5 26.123 601 358 15 75 643 24 570 5.94e-48 181
Msa1392310 AT4G19990.7 26.123 601 358 15 75 643 38 584 6.31e-48 181
Msa1392310 AT4G19990.6 26.123 601 358 15 75 643 24 570 9.83e-48 181
Msa1392310 AT4G19990.2 26.123 601 358 15 75 643 24 570 9.83e-48 181
Msa1392310 AT2G27110.3 27.802 464 295 11 234 685 50 485 1.07e-46 177
Msa1392310 AT1G80010.1 26.858 592 370 17 72 628 95 658 4.35e-45 172
Msa1392310 AT4G19990.1 25.906 552 334 13 119 643 10 513 9.57e-43 165
Msa1392310 AT4G38170.1 27.034 381 266 5 255 628 21 396 9.79e-43 163
Msa1392310 AT2G32250.5 22.085 566 373 14 75 628 41 550 3.62e-41 161
Msa1392310 AT2G32250.6 22.085 566 373 14 75 628 41 550 4.02e-41 161
Msa1392310 AT2G32250.1 22.085 566 373 14 75 628 41 550 4.02e-41 161
Msa1392310 AT2G32250.3 22.085 566 373 14 75 628 41 550 4.02e-41 161
Msa1392310 AT2G32250.2 22.085 566 373 14 75 628 41 550 4.21e-41 161
Msa1392310 AT2G32250.4 22.085 566 373 14 75 628 41 550 4.21e-41 161
Msa1392310 AT2G32250.8 22.025 563 371 14 78 628 3 509 8.93e-41 160
Msa1392310 AT2G32250.7 22.025 563 371 14 78 628 3 509 9.80e-41 160

Find 173 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTGATTAACAACCTTTA+TGG 0.138871 tig0021492:-88850 None:intergenic
CATTCATTTGAAATTGAAAT+TGG 0.139647 tig0021492:-87467 None:intergenic
AGGGAGATGGTCTGTTCTTT+TGG 0.145904 tig0021492:+89652 Msa1392310:CDS
ATAAGCAAAACCACTGAATT+TGG 0.147239 tig0021492:+88267 Msa1392310:CDS
CCTTCTTGGTAGGCTTTCTT+AGG 0.189142 tig0021492:+89397 Msa1392310:intron
TTGACATGCCGCTGGGGATA+TGG 0.190733 tig0021492:+88745 Msa1392310:CDS
TTAGAGATGAAACCATATTT+TGG 0.193583 tig0021492:-90559 None:intergenic
GTGTACTCAAATTTAAAATT+AGG 0.227389 tig0021492:-88606 None:intergenic
TCTTGGTTCAATGCTGTTCT+AGG 0.230975 tig0021492:+89550 Msa1392310:CDS
CCACCATAATCATGAACTTT+TGG 0.234641 tig0021492:+88323 Msa1392310:CDS
GTTCCAAAAGTTCATGATTA+TGG 0.235757 tig0021492:-88326 None:intergenic
TATGGAATGCCCTGCTTCTT+TGG 0.236061 tig0021492:+88783 Msa1392310:CDS
AGTTAAGCTATTCCAAAATA+TGG 0.247042 tig0021492:+90547 Msa1392310:CDS
CTTAGTTTGGGTTGATGATT+TGG 0.272442 tig0021492:-88193 None:intergenic
CTGGCACATTGTAATGAAAT+TGG 0.282052 tig0021492:-90665 None:intergenic
ATCCTTATGTTTGCCAAAAC+AGG 0.285583 tig0021492:+88408 Msa1392310:CDS
ATGAACAGAAATCCCTGTTT+TGG 0.290771 tig0021492:-88421 None:intergenic
AAATCTAGGGTTTCTTCTTC+TGG 0.296205 tig0021492:-88549 None:intergenic
TATTTCGTTGAGGCTTAGTT+TGG 0.297452 tig0021492:-88206 None:intergenic
TGCACATTCTTAACAAATCT+AGG 0.298629 tig0021492:-88563 None:intergenic
AAACCAGTGACGCGCCATTC+TGG 0.316021 tig0021492:-88294 None:intergenic
TTGGAATAGCTTAACTCTTT+CGG 0.327991 tig0021492:-90540 None:intergenic
TAGTCATTCCCGCAAGAAAA+TGG 0.334474 tig0021492:-89747 None:intergenic
TAGCACACAGCCAAAGAAGC+AGG 0.342849 tig0021492:-88793 None:intergenic
TCATCAAATGATGAGACTTA+TGG 0.350578 tig0021492:+88440 Msa1392310:CDS
TGATCCCTCTGACCAACATT+TGG 0.356055 tig0021492:+87882 Msa1392310:CDS
AAGGAGGTCGCAGAGTTTAC+TGG 0.359371 tig0021492:+90327 Msa1392310:CDS
TGCGAAGCGAATTGATTGTT+AGG 0.370439 tig0021492:+87488 Msa1392310:five_prime_UTR
CAAAACATGCTTTCTGCATA+TGG 0.375824 tig0021492:+89506 Msa1392310:CDS
TTGGGAGGAGGAGGTGGAGG+AGG 0.380602 tig0021492:+87901 Msa1392310:CDS
TCATCAAACCACACTCCATT+TGG 0.382393 tig0021492:+87957 Msa1392310:CDS
ATATAGCTCGCGCTCACTTT+GGG 0.386287 tig0021492:+89705 Msa1392310:CDS
ATGGTGAAATTTCTTTAGAA+TGG 0.386546 tig0021492:+90851 Msa1392310:three_prime_UTR
AGAAAATGGCTTCTTAGATA+TGG 0.389745 tig0021492:-89733 None:intergenic
GGAAGGAATCGAACTTGGTT+TGG 0.392049 tig0021492:-88348 None:intergenic
TATATAGCTCGCGCTCACTT+TGG 0.393538 tig0021492:+89704 Msa1392310:CDS
CGTAGCAGCGTGCGATTCCA+TGG 0.396995 tig0021492:-90192 None:intergenic
ATCTTCCAGATGTGGTTGTC+AGG 0.399237 tig0021492:+88233 Msa1392310:CDS
GCTTGCTCACTTTGTTGAAC+AGG 0.402511 tig0021492:+89831 Msa1392310:CDS
CTTGCGGGAATGACTACAAC+TGG 0.403842 tig0021492:+89754 Msa1392310:CDS
CACCGAAGATATCATACAAT+TGG 0.404756 tig0021492:-88683 None:intergenic
GTCTAAAGAACGATTAGATA+TGG 0.411264 tig0021492:+90598 Msa1392310:CDS
TAAGCAAAACCACTGAATTT+GGG 0.413718 tig0021492:+88268 Msa1392310:CDS
GATCCCTCTGACCAACATTT+GGG 0.420366 tig0021492:+87883 Msa1392310:CDS
AATAGAGAAGCCGCAGGTCT+TGG 0.423335 tig0021492:-88082 None:intergenic
CCTCCAGAATGGCGCGTCAC+TGG 0.424652 tig0021492:+88291 Msa1392310:CDS
TGGGTTGGGATAAATAATTA+TGG 0.425124 tig0021492:+88765 Msa1392310:CDS
CAACATTTGGGAGGAGGAGG+TGG 0.430387 tig0021492:+87895 Msa1392310:CDS
CACTGCATTTGACATGCCGC+TGG 0.431194 tig0021492:+88737 Msa1392310:CDS
ATAAGCCTGACAACCACATC+TGG 0.432847 tig0021492:-88238 None:intergenic
CTGTTGTGTACAAAATGTAT+AGG 0.435140 tig0021492:+90906 Msa1392310:three_prime_UTR
CTTGAGAAGTGCGTCGAACC+TGG 0.435619 tig0021492:+88465 Msa1392310:CDS
CAATGTGTGGTTCGATGAAC+AGG 0.438367 tig0021492:+90728 Msa1392310:three_prime_UTR
CCAGAGATACTTCTACCATT+AGG 0.440893 tig0021492:+90684 Msa1392310:CDS
TCTCTGAGAGTTCTTTCAAC+AGG 0.443737 tig0021492:+90419 Msa1392310:CDS
CCTAATGGTAGAAGTATCTC+TGG 0.445108 tig0021492:-90684 None:intergenic
GGAATCTATGATGACTGAAC+TGG 0.447437 tig0021492:+90705 Msa1392310:exon
ATTTCGTTGAGGCTTAGTTT+GGG 0.449059 tig0021492:-88205 None:intergenic
CGGATGGGAAGATATGCATC+TGG 0.452008 tig0021492:-90458 None:intergenic
CAAAATGTTAGCCTCAAAAC+AGG 0.452685 tig0021492:+90164 Msa1392310:CDS
TGCCGCTGGGGATATGGGTT+GGG 0.453477 tig0021492:+88751 Msa1392310:CDS
TGACATGCCGCTGGGGATAT+GGG 0.454706 tig0021492:+88746 Msa1392310:CDS
TAGGTGAACGCTACAATGAC+TGG 0.457850 tig0021492:+89569 Msa1392310:CDS
GTTTGGGTTGATGATTTGGC+AGG 0.459466 tig0021492:-88189 None:intergenic
TAAACGGTTGTTTGCATCAA+GGG 0.461284 tig0021492:-88628 None:intergenic
TTGTTGTTGGGTCCACCAAA+TGG 0.463735 tig0021492:-87972 None:intergenic
TACTTTGTTTGTCACCGTGC+TGG 0.469337 tig0021492:+88159 Msa1392310:CDS
TAAATTAACAATGTGTCGAT+TGG 0.471898 tig0021492:-89683 None:intergenic
CATTTGGGAGGAGGAGGTGG+AGG 0.472758 tig0021492:+87898 Msa1392310:CDS
TCAGTAAAAGGCAAATATCC+AGG 0.474275 tig0021492:-88483 None:intergenic
AAGAATGTGCAGAAATAGTA+AGG 0.475772 tig0021492:+88575 Msa1392310:CDS
ATCCAATTGTATGATATCTT+CGG 0.477575 tig0021492:+88681 Msa1392310:CDS
GGAAACATTTGACCGATGTA+TGG 0.479605 tig0021492:-88021 None:intergenic
CATGGAATCGCACGCTGCTA+CGG 0.484767 tig0021492:+90193 Msa1392310:CDS
TTGACGACTTTGAACTAGGC+TGG 0.486705 tig0021492:+89629 Msa1392310:CDS
TGAAGCTTCGAAAAGGCAAA+AGG 0.488243 tig0021492:-90224 None:intergenic
GCACATTCTTAACAAATCTA+GGG 0.488962 tig0021492:-88562 None:intergenic
AAATTCCAGAAAATTCAAAC+TGG 0.489969 tig0021492:-90385 None:intergenic
CAGTCATCATAGATTCCTAA+TGG 0.491526 tig0021492:-90699 None:intergenic
ACTCTTTCGGCATGATCGCT+AGG 0.495476 tig0021492:-90527 None:intergenic
CTGAATTTGGGCCTCCAGAA+TGG 0.496915 tig0021492:+88280 Msa1392310:CDS
ATCTAATCGTTCTTTAGACT+TGG 0.498595 tig0021492:-90594 None:intergenic
TCAGTTGACGACTTTGAACT+AGG 0.498779 tig0021492:+89625 Msa1392310:CDS
ACTGCATTTGACATGCCGCT+GGG 0.500632 tig0021492:+88738 Msa1392310:CDS
ATGCAGGAAGGAATCGAACT+TGG 0.504851 tig0021492:-88353 None:intergenic
ATTAACAACCTTTATGGCCC+AGG 0.508147 tig0021492:-88844 None:intergenic
CACCTCCTCCTCCCAAATGT+TGG 0.508316 tig0021492:-87894 None:intergenic
GCTTCAAGAACAACTTGTGT+TGG 0.510259 tig0021492:+90241 Msa1392310:CDS
TTGTGAGAAAGTATGACAAT+TGG 0.510937 tig0021492:+90767 Msa1392310:three_prime_UTR
ATGCCGCTGGGGATATGGGT+TGG 0.515095 tig0021492:+88750 Msa1392310:CDS
TTGTTCTTGAAGCTTCGAAA+AGG 0.515435 tig0021492:-90231 None:intergenic
GCGAAGCGAATTGATTGTTA+GGG 0.515636 tig0021492:+87489 Msa1392310:five_prime_UTR
GACTTTAGAGAGAGGAAACA+TGG 0.522539 tig0021492:+87431 Msa1392310:five_prime_UTR
TAGTAGCAAAGTTTCCGTCT+TGG 0.523045 tig0021492:+89533 Msa1392310:CDS
ACCGTTTAGAAAATATTGCC+TGG 0.526747 tig0021492:+88643 Msa1392310:CDS
TCAAACCACACTCCATTTGG+TGG 0.527504 tig0021492:+87960 Msa1392310:CDS
GAGTAAGATAATGTCTGAAG+AGG 0.527986 tig0021492:+87798 Msa1392310:exon
GTAGCAGCGTGCGATTCCAT+GGG 0.533610 tig0021492:-90191 None:intergenic
CAATTAACGCCTTCATTCAA+CGG 0.534336 tig0021492:+89788 Msa1392310:CDS
CTAAACGGTTGTTTGCATCA+AGG 0.535769 tig0021492:-88629 None:intergenic
TGGAGTGTGGTTTGATGAGA+AGG 0.539574 tig0021492:-87952 None:intergenic
GACCAACATTTGGGAGGAGG+AGG 0.539845 tig0021492:+87892 Msa1392310:CDS
ACTGATACGACGCCATCGGA+TGG 0.541479 tig0021492:-90474 None:intergenic
CTGATACGACGCCATCGGAT+GGG 0.543366 tig0021492:-90473 None:intergenic
TCTGATATAGTTCTGTATGC+AGG 0.547078 tig0021492:-88369 None:intergenic
TACTGCAAGATGAAACTGTC+CGG 0.547112 tig0021492:+88814 Msa1392310:CDS
TGATCAGTTAATATAGTCTG+TGG 0.550040 tig0021492:-89439 None:intergenic
TCCTTATGTTTGCCAAAACA+GGG 0.551056 tig0021492:+88409 Msa1392310:CDS
CCTCCCAAATGTTGGTCAGA+GGG 0.557531 tig0021492:-87886 None:intergenic
GAGACAGAAGAATGGAAACT+TGG 0.557670 tig0021492:-90628 None:intergenic
CAACGCTCCTTCCTCAAGGT+GGG 0.557799 tig0021492:+90807 Msa1392310:three_prime_UTR
TGAACTAGGCTGGAGGGAGA+TGG 0.559599 tig0021492:+89639 Msa1392310:CDS
TATGTAGAGAGGAAAGTGAC+TGG 0.562906 tig0021492:-87515 None:intergenic
ATCATACAATTGGATGGATG+AGG 0.563319 tig0021492:-88673 None:intergenic
TATTTGCATTCTATCAGCCA+TGG 0.563497 tig0021492:+90967 Msa1392310:three_prime_UTR
CAGCTTATAATTCCTTCATG+AGG 0.566205 tig0021492:-90353 None:intergenic
AGACATCACACAAAAGTTGA+AGG 0.566338 tig0021492:+90308 Msa1392310:CDS
TGGCAGGAGTGTTGCCAGCA+CGG 0.567905 tig0021492:-88173 None:intergenic
CCAAAAGTTCATGATTATGG+TGG 0.568510 tig0021492:-88323 None:intergenic
GAAGATATCATACAATTGGA+TGG 0.569457 tig0021492:-88679 None:intergenic
AACGCTCCTTCCTCAAGGTG+GGG 0.573030 tig0021492:+90808 Msa1392310:three_prime_UTR
AGCTTATAATTCCTTCATGA+GGG 0.573229 tig0021492:-90352 None:intergenic
TTCTGGAGGCCCAAATTCAG+TGG 0.573388 tig0021492:-88277 None:intergenic
TCTTATGCGAGACAGAAGAA+TGG 0.582203 tig0021492:-90636 None:intergenic
CGACTTTGAACTAGGCTGGA+GGG 0.582819 tig0021492:+89633 Msa1392310:CDS
AATAGAAAATCTTCCAGATG+TGG 0.584217 tig0021492:+88225 Msa1392310:CDS
GGAAAAGACGGTGTTGGCAA+AGG 0.584524 tig0021492:+88123 Msa1392310:CDS
TCCTCCCAAATGTTGGTCAG+AGG 0.584559 tig0021492:-87887 None:intergenic
ACTTAGAAACCGTTGAATGA+AGG 0.586482 tig0021492:-89797 None:intergenic
TCAACGCTCCTTCCTCAAGG+TGG 0.586724 tig0021492:+90806 Msa1392310:three_prime_UTR
GATAGAATGCAAATAATACA+TGG 0.587982 tig0021492:-90959 None:intergenic
TCTGACCAACATTTGGGAGG+AGG 0.587992 tig0021492:+87889 Msa1392310:CDS
AAGTTCATGATTATGGTGGT+TGG 0.589394 tig0021492:-88319 None:intergenic
ATGCATATCTTCCCATCCGA+TGG 0.597365 tig0021492:+90462 Msa1392310:CDS
AGCACACAGCCAAAGAAGCA+GGG 0.598142 tig0021492:-88792 None:intergenic
GTTTACTGGTCCCCTCATGA+AGG 0.604499 tig0021492:+90341 Msa1392310:CDS
GATGGATGAGGCATACGACC+AGG 0.609900 tig0021492:-88661 None:intergenic
ACGACGCCCCACCTTGAGGA+AGG 0.611875 tig0021492:-90814 None:intergenic
CCAGTGACGCGCCATTCTGG+AGG 0.616513 tig0021492:-88291 None:intergenic
ATATCAACGCTCCTTCCTCA+AGG 0.616758 tig0021492:+90803 Msa1392310:three_prime_UTR
TGATATCTTCGGTGATGCTG+TGG 0.618259 tig0021492:+88692 Msa1392310:CDS
ACCGAAGGAAAAGACGGTGT+TGG 0.619616 tig0021492:+88117 Msa1392310:CDS
TGGGTCCACCAAATGGAGTG+TGG 0.620546 tig0021492:-87965 None:intergenic
GCACACTGATACGACGCCAT+CGG 0.621865 tig0021492:-90478 None:intergenic
TTATGGCCCAGGAAAATGAC+CGG 0.623189 tig0021492:-88833 None:intergenic
GGTAGCAGGTGGATCCATGT+TGG 0.624526 tig0021492:+87819 Msa1392310:CDS
CTGCATTTGACATGCCGCTG+GGG 0.625737 tig0021492:+88739 Msa1392310:CDS
GGATGGGAAGATATGCATCT+GGG 0.625859 tig0021492:-90457 None:intergenic
ATTAGACGTCATCGTACCGA+AGG 0.626176 tig0021492:+88102 Msa1392310:CDS
TCATAAGCAGCATCGTGAGT+GGG 0.627606 tig0021492:-88042 None:intergenic
GGTTTCTAAGTGCACAGACA+CGG 0.627911 tig0021492:+89809 Msa1392310:CDS
TGAAACGACGCCCCACCTTG+AGG 0.628280 tig0021492:-90818 None:intergenic
ATAATGTCTGAAGAGGTAGC+AGG 0.630355 tig0021492:+87805 Msa1392310:exon
GAAAATGTATGTATGTAGAG+AGG 0.633979 tig0021492:-87526 None:intergenic
GTCATAAGCAGCATCGTGAG+TGG 0.636238 tig0021492:-88043 None:intergenic
TCGAAAAGGCAAAAGGAGTG+AGG 0.641424 tig0021492:-90217 None:intergenic
GCTTATAATTCCTTCATGAG+GGG 0.641658 tig0021492:-90351 None:intergenic
CCCTCTGACCAACATTTGGG+AGG 0.646262 tig0021492:+87886 Msa1392310:CDS
ACGTCTAATAGAGAAGCCGC+AGG 0.646866 tig0021492:-88088 None:intergenic
ACGACTTTGAACTAGGCTGG+AGG 0.648729 tig0021492:+89632 Msa1392310:CDS
TAGCAGCGTGCGATTCCATG+GGG 0.649314 tig0021492:-90190 None:intergenic
ATGTCTGAAGAGGTAGCAGG+TGG 0.649630 tig0021492:+87808 Msa1392310:CDS
TGAACGCTACAATGACTGGA+AGG 0.649833 tig0021492:+89573 Msa1392310:CDS
ATATAGTTCTGTATGCAGGA+AGG 0.660408 tig0021492:-88365 None:intergenic
AGAACAGCATTGAACCAAGA+CGG 0.662125 tig0021492:-89547 None:intergenic
CATCATCACATTCCATACAT+CGG 0.667453 tig0021492:+88009 Msa1392310:CDS
CATCGTACCGAAGGAAAAGA+CGG 0.676411 tig0021492:+88111 Msa1392310:CDS
GTCATCATAAACTACCAACA+TGG 0.680695 tig0021492:-87833 None:intergenic
ATCCCAACCCATATCCCCAG+CGG 0.701870 tig0021492:-88753 None:intergenic
ATGACTGAACTGGCAATGTG+TGG 0.712539 tig0021492:+90715 Msa1392310:exon
CATCACACAAAAGTTGAAGG+AGG 0.714854 tig0021492:+90311 Msa1392310:CDS
TGTGTGGTTCGATGAACAGG+TGG 0.731352 tig0021492:+90731 Msa1392310:three_prime_UTR
AGCAGCGTGCGATTCCATGG+GGG 0.736419 tig0021492:-90189 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTCCAATTTTATAAAA+TGG + tig0021492:89119-89138 Msa1392310:intron 10.0%
!!! TTTATTCCAATTTTATAAAA+TGG + tig0021492:89119-89138 Msa1392310:intron 10.0%
!! AAAAAGAAAAGAAAAGAAAA+CGG + tig0021492:87399-87418 Msa1392310:five_prime_UTR 15.0%
!! AAATTGGAATAAAAAGAAAT+GGG - tig0021492:89112-89131 None:intergenic 15.0%
!! AAAATTGGAATAAAAAGAAA+TGG - tig0021492:89113-89132 None:intergenic 15.0%
!! AAATTGGAATAAAAAGAAAT+GGG - tig0021492:89112-89131 None:intergenic 15.0%
!! AAAATTGGAATAAAAAGAAA+TGG - tig0021492:89113-89132 None:intergenic 15.0%
!!! ATGTTTTGATTTTTTTACAT+TGG + tig0021492:89875-89894 Msa1392310:intron 15.0%
!!! CATTCATTTGAAATTGAAAT+TGG - tig0021492:87470-87489 None:intergenic 20.0%
!! ATAATGAATGAATTGGAAAA+AGG - tig0021492:87582-87601 None:intergenic 20.0%
!! TTAAGCAATAATGAATGAAT+TGG - tig0021492:87589-87608 None:intergenic 20.0%
!!! TAGTAGAATTATACTTGTTT+TGG + tig0021492:87718-87737 Msa1392310:intron 20.0%
!!! GTGTACTCAAATTTAAAATT+AGG - tig0021492:88609-88628 None:intergenic 20.0%
!!! TTATTGATTAACAACCTTTA+TGG - tig0021492:88853-88872 None:intergenic 20.0%
!!! ATTCTTTTCTGAAATAATAC+TGG + tig0021492:88929-88948 Msa1392310:intron 20.0%
!! TCTCTACATACATACATTTT+CGG + tig0021492:87528-87547 Msa1392310:five_prime_UTR 25.0%
!! ATATTTGCCTTTTACTGAAA+AGG + tig0021492:88488-88507 Msa1392310:CDS 25.0%
!! GATCTAATTTTCTAAATGAC+TGG - tig0021492:88530-88549 None:intergenic 25.0%
! ATCCAATTGTATGATATCTT+CGG + tig0021492:88681-88700 Msa1392310:CDS 25.0%
! TTATTAGCGTCTATATCATT+TGG + tig0021492:88874-88893 Msa1392310:intron 25.0%
!!! TTTTGATTCAAATTGTGTTG+TGG + tig0021492:88898-88917 Msa1392310:intron 25.0%
! TATTTCAGAAAAGAATCCAA+GGG - tig0021492:88925-88944 None:intergenic 25.0%
! TTATTTCAGAAAAGAATCCA+AGG - tig0021492:88926-88945 None:intergenic 25.0%
! AAAAAAAACAAACTAGCACA+AGG - tig0021492:89089-89108 None:intergenic 25.0%
!! CCTTCACCATTTTATAAAAT+TGG - tig0021492:89128-89147 None:intergenic 25.0%
!! CCAATTTTATAAAATGGTGA+AGG + tig0021492:89125-89144 Msa1392310:intron 25.0%
! AATTTATGAACATTCCACAA+GGG - tig0021492:89193-89212 None:intergenic 25.0%
! AAATTTATGAACATTCCACA+AGG - tig0021492:89194-89213 None:intergenic 25.0%
!! CCTTCACCATTTTATAAAAT+TGG - tig0021492:89128-89147 None:intergenic 25.0%
!! CCAATTTTATAAAATGGTGA+AGG + tig0021492:89125-89144 Msa1392310:intron 25.0%
! AATTTATGAACATTCCACAA+GGG - tig0021492:89193-89212 None:intergenic 25.0%
! AAATTTATGAACATTCCACA+AGG - tig0021492:89194-89213 None:intergenic 25.0%
!! AACCATTCTTTAATTTACAC+TGG + tig0021492:89362-89381 Msa1392310:intron 25.0%
! AACCAGTGTAAATTAAAGAA+TGG - tig0021492:89367-89386 None:intergenic 25.0%
!!! CTTTCTTAGGTTTTATGAAT+GGG + tig0021492:89410-89429 Msa1392310:CDS 25.0%
!! TAAATTAACAATGTGTCGAT+TGG - tig0021492:89686-89705 None:intergenic 25.0%
! ATTTAGTATCTCCAAAAAGT+AGG - tig0021492:90041-90060 None:intergenic 25.0%
!!! GTTGATTTTAAAGATCAAAC+TGG + tig0021492:90113-90132 Msa1392310:CDS 25.0%
! AAATTCCAGAAAATTCAAAC+TGG - tig0021492:90388-90407 None:intergenic 25.0%
!!! AATTTTCTGGAATTTTGTGT+AGG + tig0021492:90393-90412 Msa1392310:CDS 25.0%
!!! TTTTGAAGAATCTTAGAAGA+AGG - tig0021492:90503-90522 None:intergenic 25.0%
! AGTTAAGCTATTCCAAAATA+TGG + tig0021492:90547-90566 Msa1392310:CDS 25.0%
!! TTAGAGATGAAACCATATTT+TGG - tig0021492:90562-90581 None:intergenic 25.0%
!! GTCGTTTCAAATTATTTTCA+TGG + tig0021492:90832-90851 Msa1392310:three_prime_UTR 25.0%
!! ATGGTGAAATTTCTTTAGAA+TGG + tig0021492:90851-90870 Msa1392310:three_prime_UTR 25.0%
! GATAGAATGCAAATAATACA+TGG - tig0021492:90962-90981 None:intergenic 25.0%
GAAAATGTATGTATGTAGAG+AGG - tig0021492:87529-87548 None:intergenic 30.0%
ACTACTACTACTACTACATA+CGG - tig0021492:87693-87712 None:intergenic 30.0%
! TTGTTGTTGTTGTTGTTGTT+GGG - tig0021492:87987-88006 None:intergenic 30.0%
! GAAGATTTTCTATTTCGTTG+AGG - tig0021492:88219-88238 None:intergenic 30.0%
AATAGAAAATCTTCCAGATG+TGG + tig0021492:88225-88244 Msa1392310:CDS 30.0%
ATAAGCAAAACCACTGAATT+TGG + tig0021492:88267-88286 Msa1392310:CDS 30.0%
TAAGCAAAACCACTGAATTT+GGG + tig0021492:88268-88287 Msa1392310:CDS 30.0%
GTTCCAAAAGTTCATGATTA+TGG - tig0021492:88329-88348 None:intergenic 30.0%
TATCAGATGCTGACAAAAAT+CGG + tig0021492:88385-88404 Msa1392310:CDS 30.0%
TCATCAAATGATGAGACTTA+TGG + tig0021492:88440-88459 Msa1392310:CDS 30.0%
GCACATTCTTAACAAATCTA+GGG - tig0021492:88565-88584 None:intergenic 30.0%
TGCACATTCTTAACAAATCT+AGG - tig0021492:88566-88585 None:intergenic 30.0%
AAGAATGTGCAGAAATAGTA+AGG + tig0021492:88575-88594 Msa1392310:CDS 30.0%
! ACCAGGCAATATTTTCTAAA+CGG - tig0021492:88647-88666 None:intergenic 30.0%
GAAGATATCATACAATTGGA+TGG - tig0021492:88682-88701 None:intergenic 30.0%
! TGGGTTGGGATAAATAATTA+TGG + tig0021492:88765-88784 Msa1392310:CDS 30.0%
ATTTCAGAAAAGAATCCAAG+GGG - tig0021492:88924-88943 None:intergenic 30.0%
!! TTTCTGAAATAATACTGGTG+TGG + tig0021492:88934-88953 Msa1392310:intron 30.0%
ATAAAAAAACTGCACTGTCT+TGG + tig0021492:89004-89023 Msa1392310:intron 30.0%
GATTTGTATTAACCTCCATT+TGG - tig0021492:89035-89054 None:intergenic 30.0%
!!! CTTTTATTTTTACTCCCTTG+TGG + tig0021492:89176-89195 Msa1392310:intron 30.0%
GGAAAAAAAAAACTAGCACA+AGG - tig0021492:89228-89247 None:intergenic 30.0%
!!! CTTTTATTTTTACTCCCTTG+TGG + tig0021492:89176-89195 Msa1392310:intron 30.0%
!!! GGTTTTTTTATTCACCTTCT+TGG + tig0021492:89383-89402 Msa1392310:intron 30.0%
! TTTTTATTCACCTTCTTGGT+AGG + tig0021492:89387-89406 Msa1392310:intron 30.0%
!! GCTTTCTTAGGTTTTATGAA+TGG + tig0021492:89409-89428 Msa1392310:CDS 30.0%
TGATCAGTTAATATAGTCTG+TGG - tig0021492:89442-89461 None:intergenic 30.0%
AGAAAATGGCTTCTTAGATA+TGG - tig0021492:89736-89755 None:intergenic 30.0%
CAATGATCATTCACATTTCA+TGG + tig0021492:89903-89922 Msa1392310:intron 30.0%
!! GTGAACTTTATCCTACTTTT+TGG + tig0021492:90027-90046 Msa1392310:intron 30.0%
CCAAAATTCACAGAAAGATA+AGG - tig0021492:90064-90083 None:intergenic 30.0%
! CCTTATCTTTCTGTGAATTT+TGG + tig0021492:90061-90080 Msa1392310:intron 30.0%
AGCTTATAATTCCTTCATGA+GGG - tig0021492:90355-90374 None:intergenic 30.0%
TTGGAATAGCTTAACTCTTT+CGG - tig0021492:90543-90562 None:intergenic 30.0%
ATCTAATCGTTCTTTAGACT+TGG - tig0021492:90597-90616 None:intergenic 30.0%
GTCTAAAGAACGATTAGATA+TGG + tig0021492:90598-90617 Msa1392310:CDS 30.0%
! TTGTGAGAAAGTATGACAAT+TGG + tig0021492:90767-90786 Msa1392310:three_prime_UTR 30.0%
CTGTTGTGTACAAAATGTAT+AGG + tig0021492:90906-90925 Msa1392310:three_prime_UTR 30.0%
TGTGGTAATTAAGCAGCAAA+AGG - tig0021492:87615-87634 None:intergenic 35.0%
TCAAAGTAAATTCACGAGTG+TGG - tig0021492:87638-87657 None:intergenic 35.0%
GAGTAAGATAATGTCTGAAG+AGG + tig0021492:87798-87817 Msa1392310:exon 35.0%
GTCATCATAAACTACCAACA+TGG - tig0021492:87836-87855 None:intergenic 35.0%
! GTTGTTGTTGTTGTTGTTGT+TGG - tig0021492:87988-88007 None:intergenic 35.0%
CATCATCACATTCCATACAT+CGG + tig0021492:88009-88028 Msa1392310:CDS 35.0%
!! CTTAGTTTGGGTTGATGATT+TGG - tig0021492:88196-88215 None:intergenic 35.0%
ATTTCGTTGAGGCTTAGTTT+GGG - tig0021492:88208-88227 None:intergenic 35.0%
TATTTCGTTGAGGCTTAGTT+TGG - tig0021492:88209-88228 None:intergenic 35.0%
AAGTTCATGATTATGGTGGT+TGG - tig0021492:88322-88341 None:intergenic 35.0%
CCAAAAGTTCATGATTATGG+TGG - tig0021492:88326-88345 None:intergenic 35.0%
! CCACCATAATCATGAACTTT+TGG + tig0021492:88323-88342 Msa1392310:CDS 35.0%
! ATATAGTTCTGTATGCAGGA+AGG - tig0021492:88368-88387 None:intergenic 35.0%
! TCTGATATAGTTCTGTATGC+AGG - tig0021492:88372-88391 None:intergenic 35.0%
ATCCTTATGTTTGCCAAAAC+AGG + tig0021492:88408-88427 Msa1392310:CDS 35.0%
TCCTTATGTTTGCCAAAACA+GGG + tig0021492:88409-88428 Msa1392310:CDS 35.0%
! ATGAACAGAAATCCCTGTTT+TGG - tig0021492:88424-88443 None:intergenic 35.0%
TCAGTAAAAGGCAAATATCC+AGG - tig0021492:88486-88505 None:intergenic 35.0%
! CTTACGTCCTTTTCAGTAAA+AGG - tig0021492:88498-88517 None:intergenic 35.0%
! CTTTTACTGAAAAGGACGTA+AGG + tig0021492:88496-88515 Msa1392310:CDS 35.0%
! AAATCTAGGGTTTCTTCTTC+TGG - tig0021492:88552-88571 None:intergenic 35.0%
TAAACGGTTGTTTGCATCAA+GGG - tig0021492:88631-88650 None:intergenic 35.0%
ACCGTTTAGAAAATATTGCC+TGG + tig0021492:88643-88662 Msa1392310:CDS 35.0%
ATCATACAATTGGATGGATG+AGG - tig0021492:88676-88695 None:intergenic 35.0%
CACCGAAGATATCATACAAT+TGG - tig0021492:88686-88705 None:intergenic 35.0%
ACTGTCTTGGATATACCAAA+TGG + tig0021492:89017-89036 Msa1392310:intron 35.0%
ACAAATCAAAGCCTACACTT+TGG + tig0021492:89048-89067 Msa1392310:intron 35.0%
TGCATACATTTCCAAAGTGT+AGG - tig0021492:89062-89081 None:intergenic 35.0%
!! CTTAGGTTTTATGAATGGGA+AGG + tig0021492:89414-89433 Msa1392310:CDS 35.0%
CAAAACATGCTTTCTGCATA+TGG + tig0021492:89506-89525 Msa1392310:CDS 35.0%
!! TCTAAGAAGCCATTTTCTTG+CGG + tig0021492:89738-89757 Msa1392310:CDS 35.0%
CAATTAACGCCTTCATTCAA+CGG + tig0021492:89788-89807 Msa1392310:CDS 35.0%
ACTTAGAAACCGTTGAATGA+AGG - tig0021492:89800-89819 None:intergenic 35.0%
!!! CTGTTTTGAGGCTAACATTT+TGG - tig0021492:90166-90185 None:intergenic 35.0%
! CAAAATGTTAGCCTCAAAAC+AGG + tig0021492:90164-90183 Msa1392310:CDS 35.0%
TTGTTCTTGAAGCTTCGAAA+AGG - tig0021492:90234-90253 None:intergenic 35.0%
!!! GCATCTTTTTCAGTTGAAGA+TGG + tig0021492:90275-90294 Msa1392310:CDS 35.0%
AGACATCACACAAAAGTTGA+AGG + tig0021492:90308-90327 Msa1392310:CDS 35.0%
GCTTATAATTCCTTCATGAG+GGG - tig0021492:90354-90373 None:intergenic 35.0%
CAGCTTATAATTCCTTCATG+AGG - tig0021492:90356-90375 None:intergenic 35.0%
! TGTCACCAGTTTGAATTTTC+TGG + tig0021492:90380-90399 Msa1392310:CDS 35.0%
CTGGCACATTGTAATGAAAT+TGG - tig0021492:90668-90687 None:intergenic 35.0%
CAGTCATCATAGATTCCTAA+TGG - tig0021492:90702-90721 None:intergenic 35.0%
TATTTGCATTCTATCAGCCA+TGG + tig0021492:90967-90986 Msa1392310:three_prime_UTR 35.0%
! TCTCCTCTTTTTATTGACCA+TGG - tig0021492:90987-91006 None:intergenic 35.0%
TGGTCAATAAAAAGAGGAGA+CGG + tig0021492:90987-91006 Msa1392310:three_prime_UTR 35.0%
!! GCGTTTTAGACTTTAGAGAG+AGG + tig0021492:87423-87442 Msa1392310:five_prime_UTR 40.0%
! GACTTTAGAGAGAGGAAACA+TGG + tig0021492:87431-87450 Msa1392310:five_prime_UTR 40.0%
TGCGAAGCGAATTGATTGTT+AGG + tig0021492:87488-87507 Msa1392310:five_prime_UTR 40.0%
GCGAAGCGAATTGATTGTTA+GGG + tig0021492:87489-87508 Msa1392310:five_prime_UTR 40.0%
TATGTAGAGAGGAAAGTGAC+TGG - tig0021492:87518-87537 None:intergenic 40.0%
ATAATGTCTGAAGAGGTAGC+AGG + tig0021492:87805-87824 Msa1392310:exon 40.0%
TCATCAAACCACACTCCATT+TGG + tig0021492:87957-87976 Msa1392310:CDS 40.0%
GGAAACATTTGACCGATGTA+TGG - tig0021492:88024-88043 None:intergenic 40.0%
!!! TCCCTGTTTTGGCAAACATA+AGG - tig0021492:88413-88432 None:intergenic 40.0%
CTAAACGGTTGTTTGCATCA+AGG - tig0021492:88632-88651 None:intergenic 40.0%
TACTGCAAGATGAAACTGTC+CGG + tig0021492:88814-88833 Msa1392310:CDS 40.0%
ATTAACAACCTTTATGGCCC+AGG - tig0021492:88847-88866 None:intergenic 40.0%
GTCTTGGATATACCAAATGG+AGG + tig0021492:89020-89039 Msa1392310:intron 40.0%
TAGTAGCAAAGTTTCCGTCT+TGG + tig0021492:89533-89552 Msa1392310:CDS 40.0%
! AGAACAGCATTGAACCAAGA+CGG - tig0021492:89550-89569 None:intergenic 40.0%
TCTTGGTTCAATGCTGTTCT+AGG + tig0021492:89550-89569 Msa1392310:CDS 40.0%
TCAGTTGACGACTTTGAACT+AGG + tig0021492:89625-89644 Msa1392310:CDS 40.0%
!! CTAAGAAGCCATTTTCTTGC+GGG + tig0021492:89739-89758 Msa1392310:CDS 40.0%
TAGTCATTCCCGCAAGAAAA+TGG - tig0021492:89750-89769 None:intergenic 40.0%
!! ATTTTGGAGATTCTGCTGCA+TGG - tig0021492:90150-90169 None:intergenic 40.0%
TGAAGCTTCGAAAAGGCAAA+AGG - tig0021492:90227-90246 None:intergenic 40.0%
GCTTCAAGAACAACTTGTGT+TGG + tig0021492:90241-90260 Msa1392310:CDS 40.0%
CATCACACAAAAGTTGAAGG+AGG + tig0021492:90311-90330 Msa1392310:CDS 40.0%
! TCTCTGAGAGTTCTTTCAAC+AGG + tig0021492:90419-90438 Msa1392310:CDS 40.0%
GAGACAGAAGAATGGAAACT+TGG - tig0021492:90631-90650 None:intergenic 40.0%
TCTTATGCGAGACAGAAGAA+TGG - tig0021492:90639-90658 None:intergenic 40.0%
!! CCTAATGGTAGAAGTATCTC+TGG - tig0021492:90687-90706 None:intergenic 40.0%
CCAGAGATACTTCTACCATT+AGG + tig0021492:90684-90703 Msa1392310:CDS 40.0%
GGAATCTATGATGACTGAAC+TGG + tig0021492:90705-90724 Msa1392310:exon 40.0%
CAGCCATGGTCAATAAAAAG+AGG + tig0021492:90981-91000 Msa1392310:three_prime_UTR 40.0%
CAATAAAAAGAGGAGACGGT+TGG + tig0021492:90991-91010 Msa1392310:three_prime_UTR 40.0%
GTAAATTCACGAGTGTGGTG+TGG - tig0021492:87633-87652 None:intergenic 45.0%
TGATCCCTCTGACCAACATT+TGG + tig0021492:87882-87901 Msa1392310:CDS 45.0%
GATCCCTCTGACCAACATTT+GGG + tig0021492:87883-87902 Msa1392310:CDS 45.0%
TGGAGTGTGGTTTGATGAGA+AGG - tig0021492:87955-87974 None:intergenic 45.0%
TCAAACCACACTCCATTTGG+TGG + tig0021492:87960-87979 Msa1392310:CDS 45.0%
! TTGTTGTTGGGTCCACCAAA+TGG - tig0021492:87975-87994 None:intergenic 45.0%
TCATAAGCAGCATCGTGAGT+GGG - tig0021492:88045-88064 None:intergenic 45.0%
! ACTCATTTTGCCAAGACCTG+CGG + tig0021492:88072-88091 Msa1392310:CDS 45.0%
ATTAGACGTCATCGTACCGA+AGG + tig0021492:88102-88121 Msa1392310:CDS 45.0%
CATCGTACCGAAGGAAAAGA+CGG + tig0021492:88111-88130 Msa1392310:CDS 45.0%
! TACTTTGTTTGTCACCGTGC+TGG + tig0021492:88159-88178 Msa1392310:CDS 45.0%
!! GTTTGGGTTGATGATTTGGC+AGG - tig0021492:88192-88211 None:intergenic 45.0%
ATCTTCCAGATGTGGTTGTC+AGG + tig0021492:88233-88252 Msa1392310:CDS 45.0%
ATAAGCCTGACAACCACATC+TGG - tig0021492:88241-88260 None:intergenic 45.0%
GGAAGGAATCGAACTTGGTT+TGG - tig0021492:88351-88370 None:intergenic 45.0%
ATGCAGGAAGGAATCGAACT+TGG - tig0021492:88356-88375 None:intergenic 45.0%
TGATATCTTCGGTGATGCTG+TGG + tig0021492:88692-88711 Msa1392310:CDS 45.0%
TATGGAATGCCCTGCTTCTT+TGG + tig0021492:88783-88802 Msa1392310:CDS 45.0%
!! AAACTGTCCGGTCATTTTCC+TGG + tig0021492:88826-88845 Msa1392310:CDS 45.0%
!! AACTGTCCGGTCATTTTCCT+GGG + tig0021492:88827-88846 Msa1392310:CDS 45.0%
TTATGGCCCAGGAAAATGAC+CGG - tig0021492:88836-88855 None:intergenic 45.0%
!! GTCATTTTCCTGGGCCATAA+AGG + tig0021492:88836-88855 Msa1392310:CDS 45.0%
CCTAAGAAAGCCTACCAAGA+AGG - tig0021492:89400-89419 None:intergenic 45.0%
CCTTCTTGGTAGGCTTTCTT+AGG + tig0021492:89397-89416 Msa1392310:intron 45.0%
TAGGTGAACGCTACAATGAC+TGG + tig0021492:89569-89588 Msa1392310:CDS 45.0%
TGAACGCTACAATGACTGGA+AGG + tig0021492:89573-89592 Msa1392310:CDS 45.0%
TTGACGACTTTGAACTAGGC+TGG + tig0021492:89629-89648 Msa1392310:CDS 45.0%
! AGGGAGATGGTCTGTTCTTT+TGG + tig0021492:89652-89671 Msa1392310:CDS 45.0%
! GGGAGATGGTCTGTTCTTTT+GGG + tig0021492:89653-89672 Msa1392310:CDS 45.0%
TATATAGCTCGCGCTCACTT+TGG + tig0021492:89704-89723 Msa1392310:CDS 45.0%
ATATAGCTCGCGCTCACTTT+GGG + tig0021492:89705-89724 Msa1392310:CDS 45.0%
GGTTTCTAAGTGCACAGACA+CGG + tig0021492:89809-89828 Msa1392310:CDS 45.0%
GCTTGCTCACTTTGTTGAAC+AGG + tig0021492:89831-89850 Msa1392310:CDS 45.0%
! TTTGGTTCGCTTTGCACAAC+AGG + tig0021492:90079-90098 Msa1392310:intron 45.0%
TCGAAAAGGCAAAAGGAGTG+AGG - tig0021492:90220-90239 None:intergenic 45.0%
GGATGGGAAGATATGCATCT+GGG - tig0021492:90460-90479 None:intergenic 45.0%
ATGCATATCTTCCCATCCGA+TGG + tig0021492:90462-90481 Msa1392310:CDS 45.0%
ATGACTGAACTGGCAATGTG+TGG + tig0021492:90715-90734 Msa1392310:exon 45.0%
CAATGTGTGGTTCGATGAAC+AGG + tig0021492:90728-90747 Msa1392310:three_prime_UTR 45.0%
ATATCAACGCTCCTTCCTCA+AGG + tig0021492:90803-90822 Msa1392310:three_prime_UTR 45.0%
ATGTCTGAAGAGGTAGCAGG+TGG + tig0021492:87808-87827 Msa1392310:CDS 50.0%
CCTCCCAAATGTTGGTCAGA+GGG - tig0021492:87889-87908 None:intergenic 50.0%
TCCTCCCAAATGTTGGTCAG+AGG - tig0021492:87890-87909 None:intergenic 50.0%
TCTGACCAACATTTGGGAGG+AGG + tig0021492:87889-87908 Msa1392310:CDS 50.0%
GTCATAAGCAGCATCGTGAG+TGG - tig0021492:88046-88065 None:intergenic 50.0%
AATAGAGAAGCCGCAGGTCT+TGG - tig0021492:88085-88104 None:intergenic 50.0%
ACGTCTAATAGAGAAGCCGC+AGG - tig0021492:88091-88110 None:intergenic 50.0%
ACCGAAGGAAAAGACGGTGT+TGG + tig0021492:88117-88136 Msa1392310:CDS 50.0%
! GCCAACACCGTCTTTTCCTT+CGG - tig0021492:88121-88140 None:intergenic 50.0%
!! GGAAAAGACGGTGTTGGCAA+AGG + tig0021492:88123-88142 Msa1392310:CDS 50.0%
! TTCTGGAGGCCCAAATTCAG+TGG - tig0021492:88280-88299 None:intergenic 50.0%
CTGAATTTGGGCCTCCAGAA+TGG + tig0021492:88280-88299 Msa1392310:CDS 50.0%
ACTGCATTTGACATGCCGCT+GGG + tig0021492:88738-88757 Msa1392310:CDS 50.0%
AGCACACAGCCAAAGAAGCA+GGG - tig0021492:88795-88814 None:intergenic 50.0%
TAGCACACAGCCAAAGAAGC+AGG - tig0021492:88796-88815 None:intergenic 50.0%
CAAATTGTGTTGTGGCCCCT+TGG + tig0021492:88906-88925 Msa1392310:intron 50.0%
!! TGGTGAAGGTACTTCAGCTG+TGG + tig0021492:89276-89295 Msa1392310:intron 50.0%
ACGACTTTGAACTAGGCTGG+AGG + tig0021492:89632-89651 Msa1392310:CDS 50.0%
CGACTTTGAACTAGGCTGGA+GGG + tig0021492:89633-89652 Msa1392310:CDS 50.0%
CTTGCGGGAATGACTACAAC+TGG + tig0021492:89754-89773 Msa1392310:CDS 50.0%
AAGGAGGTCGCAGAGTTTAC+TGG + tig0021492:90327-90346 Msa1392310:CDS 50.0%
GTTTACTGGTCCCCTCATGA+AGG + tig0021492:90341-90360 Msa1392310:CDS 50.0%
CGGATGGGAAGATATGCATC+TGG - tig0021492:90461-90480 None:intergenic 50.0%
ACTCTTTCGGCATGATCGCT+AGG - tig0021492:90530-90549 None:intergenic 50.0%
TGTGTGGTTCGATGAACAGG+TGG + tig0021492:90731-90750 Msa1392310:three_prime_UTR 50.0%
GGTAGCAGGTGGATCCATGT+TGG + tig0021492:87819-87838 Msa1392310:CDS 55.0%
CCCTCTGACCAACATTTGGG+AGG + tig0021492:87886-87905 Msa1392310:CDS 55.0%
GACCAACATTTGGGAGGAGG+AGG + tig0021492:87892-87911 Msa1392310:CDS 55.0%
CACCTCCTCCTCCCAAATGT+TGG - tig0021492:87897-87916 None:intergenic 55.0%
CAACATTTGGGAGGAGGAGG+TGG + tig0021492:87895-87914 Msa1392310:CDS 55.0%
TGGGTCCACCAAATGGAGTG+TGG - tig0021492:87968-87987 None:intergenic 55.0%
AAACCAGTGACGCGCCATTC+TGG - tig0021492:88297-88316 None:intergenic 55.0%
! CTTGAGAAGTGCGTCGAACC+TGG + tig0021492:88465-88484 Msa1392310:CDS 55.0%
GATGGATGAGGCATACGACC+AGG - tig0021492:88664-88683 None:intergenic 55.0%
CACTGCATTTGACATGCCGC+TGG + tig0021492:88737-88756 Msa1392310:CDS 55.0%
CTGCATTTGACATGCCGCTG+GGG + tig0021492:88739-88758 Msa1392310:CDS 55.0%
TTGACATGCCGCTGGGGATA+TGG + tig0021492:88745-88764 Msa1392310:CDS 55.0%
TGACATGCCGCTGGGGATAT+GGG + tig0021492:88746-88765 Msa1392310:CDS 55.0%
ATCCCAACCCATATCCCCAG+CGG - tig0021492:88756-88775 None:intergenic 55.0%
! TGGTGAAGGTACGTCAGCTG+TGG + tig0021492:89139-89158 Msa1392310:intron 55.0%
TGAACTAGGCTGGAGGGAGA+TGG + tig0021492:89639-89658 Msa1392310:CDS 55.0%
TAGCAGCGTGCGATTCCATG+GGG - tig0021492:90193-90212 None:intergenic 55.0%
GTAGCAGCGTGCGATTCCAT+GGG - tig0021492:90194-90213 None:intergenic 55.0%
CATGGAATCGCACGCTGCTA+CGG + tig0021492:90193-90212 Msa1392310:CDS 55.0%
CTGATACGACGCCATCGGAT+GGG - tig0021492:90476-90495 None:intergenic 55.0%
ACTGATACGACGCCATCGGA+TGG - tig0021492:90477-90496 None:intergenic 55.0%
GCACACTGATACGACGCCAT+CGG - tig0021492:90481-90500 None:intergenic 55.0%
TCAACGCTCCTTCCTCAAGG+TGG + tig0021492:90806-90825 Msa1392310:three_prime_UTR 55.0%
CAACGCTCCTTCCTCAAGGT+GGG + tig0021492:90807-90826 Msa1392310:three_prime_UTR 55.0%
AACGCTCCTTCCTCAAGGTG+GGG + tig0021492:90808-90827 Msa1392310:three_prime_UTR 55.0%
CATTTGGGAGGAGGAGGTGG+AGG + tig0021492:87898-87917 Msa1392310:CDS 60.0%
!! TGGCAGGAGTGTTGCCAGCA+CGG - tig0021492:88176-88195 None:intergenic 60.0%
ATGCCGCTGGGGATATGGGT+TGG + tig0021492:88750-88769 Msa1392310:CDS 60.0%
TGCCGCTGGGGATATGGGTT+GGG + tig0021492:88751-88770 Msa1392310:CDS 60.0%
! CCATGGGGGCTCCTGTTTTG+AGG - tig0021492:90178-90197 None:intergenic 60.0%
CCTCAAAACAGGAGCCCCCA+TGG + tig0021492:90175-90194 Msa1392310:CDS 60.0%
AGCAGCGTGCGATTCCATGG+GGG - tig0021492:90192-90211 None:intergenic 60.0%
CGTAGCAGCGTGCGATTCCA+TGG - tig0021492:90195-90214 None:intergenic 60.0%
TGAAACGACGCCCCACCTTG+AGG - tig0021492:90821-90840 None:intergenic 60.0%
TTGGGAGGAGGAGGTGGAGG+AGG + tig0021492:87901-87920 Msa1392310:CDS 65.0%
CCAGTGACGCGCCATTCTGG+AGG - tig0021492:88294-88313 None:intergenic 65.0%
CCTCCAGAATGGCGCGTCAC+TGG + tig0021492:88291-88310 Msa1392310:CDS 65.0%
ACGACGCCCCACCTTGAGGA+AGG - tig0021492:90817-90836 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0021492 gene 87397 91021 87397 ID=Msa1392310;Name=Msa1392310
tig0021492 mRNA 87397 91021 87397 ID=Msa1392310-mRNA-1;Parent=Msa1392310;Name=Msa1392310-mRNA-1;_AED=0.09;_eAED=0.09;_QI=167|1|1|1|0.66|0.5|4|306|702
tig0021492 exon 87397 87549 87397 ID=Msa1392310-mRNA-1:exon:13082;Parent=Msa1392310-mRNA-1
tig0021492 exon 87794 88857 87794 ID=Msa1392310-mRNA-1:exon:13083;Parent=Msa1392310-mRNA-1
tig0021492 exon 89409 89852 89409 ID=Msa1392310-mRNA-1:exon:13084;Parent=Msa1392310-mRNA-1
tig0021492 exon 90101 91021 90101 ID=Msa1392310-mRNA-1:exon:13085;Parent=Msa1392310-mRNA-1
tig0021492 five_prime_UTR 87397 87549 87397 ID=Msa1392310-mRNA-1:five_prime_utr;Parent=Msa1392310-mRNA-1
tig0021492 five_prime_UTR 87794 87807 87794 ID=Msa1392310-mRNA-1:five_prime_utr;Parent=Msa1392310-mRNA-1
tig0021492 CDS 87808 88857 87808 ID=Msa1392310-mRNA-1:cds;Parent=Msa1392310-mRNA-1
tig0021492 CDS 89409 89852 89409 ID=Msa1392310-mRNA-1:cds;Parent=Msa1392310-mRNA-1
tig0021492 CDS 90101 90715 90101 ID=Msa1392310-mRNA-1:cds;Parent=Msa1392310-mRNA-1
tig0021492 three_prime_UTR 90716 91021 90716 ID=Msa1392310-mRNA-1:three_prime_utr;Parent=Msa1392310-mRNA-1
Gene Sequence

>Msa1392310

ATGTCTGAAGAGGTAGCAGGTGGATCCATGTTGGTAGTTTATGATGACGATGATATTGATGTTGATGTTGACGATGATCCCTCTGACCAACATTTGGGAGGAGGAGGTGGAGGAGGATGCGATACAAGCAGCACAGAAGACTCTCCTTCTCATCAAACCACACTCCATTTGGTGGACCCAACAACAACAACAACAACAACTCATCATCACATTCCATACATCGGTCAAATGTTTCCCACTCACGATGCTGCTTATGACTTCTATACTCATTTTGCCAAGACCTGCGGCTTCTCTATTAGACGTCATCGTACCGAAGGAAAAGACGGTGTTGGCAAAGGACTTACTAGACGCTACTTTGTTTGTCACCGTGCTGGCAACACTCCTGCCAAATCATCAACCCAAACTAAGCCTCAACGAAATAGAAAATCTTCCAGATGTGGTTGTCAGGCTTATATGCGCATAAGCAAAACCACTGAATTTGGGCCTCCAGAATGGCGCGTCACTGGTTTTGCCAACCACCATAATCATGAACTTTTGGAACCAAACCAAGTTCGATTCCTTCCTGCATACAGAACTATATCAGATGCTGACAAAAATCGGATCCTTATGTTTGCCAAAACAGGGATTTCTGTTCATCAAATGATGAGACTTATGGAGCTTGAGAAGTGCGTCGAACCTGGATATTTGCCTTTTACTGAAAAGGACGTAAGGAATTTACTCCAGTCATTTAGAAAATTAGATCCAGAAGAAGAAACCCTAGATTTGTTAAGAATGTGCAGAAATAGTAAGGACAAAGATCCTAATTTTAAATTTGAGTACACCCTTGATGCAAACAACCGTTTAGAAAATATTGCCTGGTCGTATGCCTCATCCATCCAATTGTATGATATCTTCGGTGATGCTGTGGTGTTTGATACAACACATCGTCTCACTGCATTTGACATGCCGCTGGGGATATGGGTTGGGATAAATAATTATGGAATGCCCTGCTTCTTTGGCTGTGTGCTACTGCAAGATGAAACTGTCCGGTCATTTTCCTGGGCCATAAAGGCTTTCTTAGGTTTTATGAATGGGAAGGCTCCACAGACTATATTAACTGATCAAAATATTTGTCTCAAAGAAGCACTATCTGCAGAAATGCTGATGACAAAACATGCTTTCTGCATATGGATGATAGTAGCAAAGTTTCCGTCTTGGTTCAATGCTGTTCTAGGTGAACGCTACAATGACTGGAAGGCTGAGTTTTATAGACTTTATAATCTTGAATCAGTTGACGACTTTGAACTAGGCTGGAGGGAGATGGTCTGTTCTTTTGGGCTGCATTCCAATCGACACATTGTTAATTTATATAGCTCGCGCTCACTTTGGGCATTGCCATATCTAAGAAGCCATTTTCTTGCGGGAATGACTACAACTGGTCAGTCAAAGTCAATTAACGCCTTCATTCAACGGTTTCTAAGTGCACAGACACGGCTTGCTCACTTTGTTGAACAGGCAGCTGTTGCTGTTGATTTTAAAGATCAAACTGGTGAACAACAAACCATGCAGCAGAATCTCCAAAATGTTAGCCTCAAAACAGGAGCCCCCATGGAATCGCACGCTGCTACGGTCCTCACTCCTTTTGCCTTTTCGAAGCTTCAAGAACAACTTGTGTTGGCTGCACATTATGCATCTTTTTCAGTTGAAGATGGTTTTCTTGTGAGACATCACACAAAAGTTGAAGGAGGTCGCAGAGTTTACTGGTCCCCTCATGAAGGAATTATAAGCTGCAGCTGTCACCAGTTTGAATTTTCTGGAATTTTGTGTAGGCACTCTCTGAGAGTTCTTTCAACAGGAAATTGCTTTCAAATCCCAGATGCATATCTTCCCATCCGATGGCGTCGTATCAGTGTGCCTTCTTCTAAGATTCTTCAAAATGCACCTAGCGATCATGCCGAAAGAGTTAAGCTATTCCAAAATATGGTTTCATCTCTAATTACAGAATCTGCCAAGTCTAAAGAACGATTAGATATGGCAACAGACCAAGTTTCCATTCTTCTGTCTCGCATAAGAGAGCAACCAATTTCATTACAATGTGCCAGAGATACTTCTACCATTAGGAATCTATGA
Protein sequence

>Msa1392310

MSEEVAGGSMLVVYDDDDIDVDVDDDPSDQHLGGGGGGGCDTSSTEDSPSHQTTLHLVDPTTTTTTTHHHIPYIGQMFPTHDAAYDFYTHFAKTCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPAKSSTQTKPQRNRKSSRCGCQAYMRISKTTEFGPPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEETLDLLRMCRNSKDKDPNFKFEYTLDANNRLENIAWSYASSIQLYDIFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCVLLQDETVRSFSWAIKAFLGFMNGKAPQTILTDQNICLKEALSAEMLMTKHAFCIWMIVAKFPSWFNAVLGERYNDWKAEFYRLYNLESVDDFELGWREMVCSFGLHSNRHIVNLYSSRSLWALPYLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQAAVAVDFKDQTGEQQTMQQNLQNVSLKTGAPMESHAATVLTPFAFSKLQEQLVLAAHYASFSVEDGFLVRHHTKVEGGRRVYWSPHEGIISCSCHQFEFSGILCRHSLRVLSTGNCFQIPDAYLPIRWRRISVPSSKILQNAPSDHAERVKLFQNMVSSLITESAKSKERLDMATDQVSILLSRIREQPISLQCARDTSTIRNL*