AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1351660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1351660 MtrunA17_Chr2g0276841 97.863 702 12 2 1 701 1 700 0.0 1445
Msa1351660 MtrunA17_Chr2g0294841 58.511 658 251 5 41 688 22 667 0.0 808
Msa1351660 MtrunA17_Chr1g0198761 45.692 650 330 5 57 686 21 667 0.0 610
Msa1351660 MtrunA17_Chr2g0290391 43.109 624 335 5 71 682 51 666 0.0 533
Msa1351660 MtrunA17_Chr5g0431001 50.000 426 208 2 70 490 60 485 1.36e-153 454
Msa1351660 MtrunA17_Chr5g0448761 29.495 634 416 14 71 682 60 684 4.45e-80 271
Msa1351660 MtrunA17_Chr2g0329031 27.014 633 425 16 77 700 20 624 3.38e-74 254
Msa1351660 MtrunA17_Chr1g0207551 29.538 606 362 15 71 648 34 602 1.25e-71 248
Msa1351660 MtrunA17_Chr1g0202341 28.169 568 385 10 71 627 51 606 7.37e-71 244
Msa1351660 MtrunA17_Chr5g0440451 29.310 580 362 12 71 625 43 599 3.69e-67 238
Msa1351660 MtrunA17_Chr3g0082121 28.042 567 380 13 69 627 41 587 1.39e-62 221
Msa1351660 MtrunA17_Chr2g0296781 28.152 579 360 20 77 627 3 553 2.48e-62 221
Msa1351660 MtrunA17_Chr3g0080351 26.332 638 405 17 71 684 76 672 4.40e-62 222
Msa1351660 MtrunA17_Chr2g0287651 26.655 574 373 15 77 627 81 629 1.44e-59 216
Msa1351660 MtrunA17_Chr5g0441581 27.671 571 377 14 71 627 32 580 2.92e-59 212
Msa1351660 MtrunA17_Chr8g0363841 25.151 664 438 14 72 698 18 659 2.08e-58 209
Msa1351660 MtrunA17_Chr1g0203051 25.490 561 374 14 77 617 85 621 2.38e-56 203
Msa1351660 MtrunA17_Chr6g0458391 26.724 580 386 12 58 627 212 762 4.56e-56 204
Msa1351660 MtrunA17_Chr6g0458391 34.400 125 76 3 71 195 91 209 3.26e-13 73.2
Msa1351660 MtrunA17_Chr6g0477261 30.501 459 273 15 197 627 2 442 6.97e-56 202
Msa1351660 MtrunA17_Chr2g0287061 26.445 571 351 14 71 627 183 698 2.13e-55 202
Msa1351660 MtrunA17_Chr2g0324011 25.480 573 394 11 71 627 10 565 9.23e-52 189
Msa1351660 MtrunA17_Chr2g0291581 25.963 597 387 15 71 642 71 637 2.23e-51 189
Msa1351660 MtrunA17_Chr3g0118611 30.075 399 254 5 233 625 117 496 9.62e-51 189
Msa1351660 MtrunA17_Chr1g0196541 24.303 646 433 16 77 698 3 616 1.16e-48 182
Msa1351660 MtrunA17_Chr5g0448511 29.058 382 261 4 250 625 15 392 2.38e-48 179
Msa1351660 MtrunA17_Chr1g0203721 23.756 623 428 15 73 669 65 666 4.50e-48 182
Msa1351660 MtrunA17_Chr2g0291591 23.684 532 367 12 65 579 58 567 5.46e-39 152
Msa1351660 MtrunA17_Chr1g0164591 27.864 323 214 8 151 469 1 308 9.26e-34 132
Msa1351660 MtrunA17_Chr3g0081281 49.462 93 47 0 214 306 1 93 1.81e-28 109
Msa1351660 MtrunA17_Chr7g0258861 28.328 293 197 7 71 358 10 294 3.34e-25 106
Msa1351660 MtrunA17_Chr2g0308841 25.455 220 150 4 423 632 14 229 3.34e-13 70.5
Msa1351660 MtrunA17_Chr7g0233911 35.659 129 70 6 71 197 34 151 1.03e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1351660 AT1G10240.2 75.362 690 149 3 8 697 6 674 0.0 1118
Msa1351660 AT1G10240.1 75.362 690 149 3 8 697 6 674 0.0 1118
Msa1351660 AT5G28530.1 41.810 641 353 7 58 683 39 674 7.35e-175 516
Msa1351660 AT5G28530.3 41.810 641 349 7 58 683 39 670 1.15e-174 515
Msa1351660 AT5G28530.2 41.810 641 349 7 58 683 39 670 1.15e-174 515
Msa1351660 AT5G28530.4 38.193 631 327 9 58 683 39 611 3.94e-140 424
Msa1351660 AT5G28530.5 38.193 631 323 9 58 683 39 607 7.09e-140 424
Msa1351660 AT4G38180.1 29.794 678 440 13 15 672 22 683 3.26e-84 283
Msa1351660 AT4G15090.1 29.516 620 400 14 71 671 51 652 6.13e-77 264
Msa1351660 AT4G15090.5 29.516 620 400 14 71 671 51 652 6.13e-77 264
Msa1351660 AT4G15090.3 29.516 620 400 14 71 671 51 652 6.13e-77 264
Msa1351660 AT4G15090.2 29.516 620 400 14 71 671 51 652 6.13e-77 264
Msa1351660 AT4G15090.4 29.516 620 400 14 71 671 51 652 6.13e-77 264
Msa1351660 AT1G76320.3 26.634 612 405 14 77 671 3 587 5.32e-61 217
Msa1351660 AT1G76320.2 26.194 607 414 13 77 671 3 587 9.11e-61 217
Msa1351660 AT1G76320.1 26.634 612 405 14 77 671 3 587 1.03e-60 217
Msa1351660 AT1G76320.4 26.634 612 405 14 77 671 3 587 1.03e-60 217
Msa1351660 AT3G22170.2 24.766 642 391 19 71 671 70 660 1.71e-57 209
Msa1351660 AT3G22170.1 24.766 642 391 19 71 671 70 660 1.71e-57 209
Msa1351660 AT2G27110.2 25.955 628 405 17 71 684 49 630 8.47e-54 199
Msa1351660 AT2G27110.1 25.955 628 405 17 71 684 49 630 8.47e-54 199
Msa1351660 AT3G06250.2 26.690 577 338 16 71 627 190 701 1.41e-51 192
Msa1351660 AT3G06250.1 26.690 577 338 16 71 627 190 701 1.41e-51 192
Msa1351660 AT3G06250.3 26.690 577 338 16 71 627 190 701 1.41e-51 192
Msa1351660 AT1G52520.1 26.361 588 365 18 71 627 85 635 8.51e-51 189
Msa1351660 AT5G18960.2 26.923 572 346 17 71 627 211 725 7.29e-50 187
Msa1351660 AT5G18960.1 26.923 572 346 17 71 627 211 725 7.29e-50 187
Msa1351660 AT4G19990.3 25.882 595 367 13 74 642 24 570 1.14e-47 180
Msa1351660 AT4G19990.4 25.882 595 367 13 74 642 24 570 1.14e-47 180
Msa1351660 AT4G19990.5 25.882 595 367 13 74 642 24 570 1.46e-47 180
Msa1351660 AT4G19990.7 25.882 595 367 13 74 642 38 584 1.62e-47 180
Msa1351660 AT4G19990.6 25.882 595 367 13 74 642 24 570 2.36e-47 179
Msa1351660 AT4G19990.2 25.882 595 367 13 74 642 24 570 2.36e-47 179
Msa1351660 AT2G27110.3 27.802 464 295 11 233 684 50 485 9.69e-47 177
Msa1351660 AT1G80010.1 27.027 592 369 17 71 627 95 658 6.32e-46 175
Msa1351660 AT2G32250.5 22.261 566 372 13 74 627 41 550 5.53e-43 166
Msa1351660 AT2G32250.2 22.261 566 372 13 74 627 41 550 7.96e-43 166
Msa1351660 AT2G32250.4 22.261 566 372 13 74 627 41 550 7.96e-43 166
Msa1351660 AT4G38170.1 28.045 353 246 4 282 627 45 396 8.00e-43 163
Msa1351660 AT2G32250.6 22.261 566 372 13 74 627 41 550 9.23e-43 166
Msa1351660 AT2G32250.1 22.261 566 372 13 74 627 41 550 9.23e-43 166
Msa1351660 AT2G32250.3 22.261 566 372 13 74 627 41 550 9.23e-43 166
Msa1351660 AT2G32250.8 22.202 563 370 13 77 627 3 509 1.77e-42 165
Msa1351660 AT2G32250.7 22.202 563 370 13 77 627 3 509 2.06e-42 165
Msa1351660 AT4G19990.1 25.641 546 343 11 118 642 10 513 2.58e-42 164

Find 173 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTGATTAACAACCTTTA+TGG 0.138871 tig0012345:+12850 None:intergenic
CATTCATTTGAAATTGAAAT+TGG 0.139647 tig0012345:+14227 None:intergenic
AGGGAGATGGTCTGTTCTTT+TGG 0.145904 tig0012345:-12048 Msa1351660:CDS
ATAAGCAAAACCACTGAATT+TGG 0.147239 tig0012345:-13433 Msa1351660:CDS
CCTTCTTGGTAGGCTTTCTT+AGG 0.189142 tig0012345:-12303 Msa1351660:intron
TTGACATGCCGCTGGGGATA+TGG 0.190733 tig0012345:-12955 Msa1351660:CDS
TTAGAGATGAAACCATATTT+TGG 0.193583 tig0012345:+11141 None:intergenic
GTGTACTCAAATTTAAAATT+AGG 0.227389 tig0012345:+13094 None:intergenic
TCTTGGTTCAATGCTGTTCT+AGG 0.230975 tig0012345:-12150 Msa1351660:CDS
CCACCATAATCATGAACTTT+TGG 0.234641 tig0012345:-13377 Msa1351660:CDS
GTTCCAAAAGTTCATGATTA+TGG 0.235757 tig0012345:+13374 None:intergenic
TATGGAATGCCCTGCTTCTT+TGG 0.236061 tig0012345:-12917 Msa1351660:CDS
AGTTAAGCTATTCCAAAATA+TGG 0.247042 tig0012345:-11153 Msa1351660:CDS
CTTAGTTTGGGTTGATGATT+TGG 0.272442 tig0012345:+13507 None:intergenic
CTGGCACATTGTAATGAAAT+TGG 0.282052 tig0012345:+11035 None:intergenic
ATCCTTATGTTTGCCAAAAC+AGG 0.285583 tig0012345:-13292 Msa1351660:CDS
ATGAACAGAAATCCCTGTTT+TGG 0.290771 tig0012345:+13279 None:intergenic
AAATCTAGGGTTTCTTCTTC+TGG 0.296205 tig0012345:+13151 None:intergenic
TATTTCGTTGAGGCTTAGTT+TGG 0.297452 tig0012345:+13494 None:intergenic
TGCACATTCTTAACAAATCT+AGG 0.298629 tig0012345:+13137 None:intergenic
AAGAATGTGCAGAAATATTA+AGG 0.303262 tig0012345:-13125 Msa1351660:CDS
AAACCAGTGACGCGCCATTC+TGG 0.316021 tig0012345:+13406 None:intergenic
TTGGAATAGCTTAACTCTTT+CGG 0.327991 tig0012345:+11160 None:intergenic
TAGTCATTCCCGCAAGAAAA+TGG 0.334474 tig0012345:+11953 None:intergenic
TAGGTGAACGCTACAATAAC+TGG 0.336116 tig0012345:-12131 Msa1351660:CDS
TAGCACACAGCCAAAGAAGC+AGG 0.342849 tig0012345:+12907 None:intergenic
TCATCAAATGATGAGACTTA+TGG 0.350578 tig0012345:-13260 Msa1351660:CDS
TGATCCCTCTGACCAACATT+TGG 0.356055 tig0012345:-13815 Msa1351660:CDS
AAGGAGGTCGCAGAGTTTAC+TGG 0.359371 tig0012345:-11373 Msa1351660:CDS
TGCGAAGCGAATTGATTGTT+AGG 0.370439 tig0012345:-14206 Msa1351660:five_prime_UTR
CAAAACATGCTTTCTGCATA+TGG 0.375824 tig0012345:-12194 Msa1351660:CDS
TTGGGAGGAGGAGGTGGAGG+AGG 0.380602 tig0012345:-13796 Msa1351660:CDS
TCATCAAACCACACTCCATT+TGG 0.382393 tig0012345:-13740 Msa1351660:CDS
ATATAGCTCGCGCTCACTTT+GGG 0.386287 tig0012345:-11995 Msa1351660:CDS
ATGGTGAAATTTCTTTAGAA+TGG 0.386546 tig0012345:-10849 Msa1351660:three_prime_UTR
AGAAAATGGCTTCTTAGATA+TGG 0.389745 tig0012345:+11967 None:intergenic
GGAAGGAATCGAACTTGGTT+TGG 0.392049 tig0012345:+13352 None:intergenic
TATATAGCTCGCGCTCACTT+TGG 0.393538 tig0012345:-11996 Msa1351660:CDS
CGTAGCAGCGTGCGATTCCA+TGG 0.396995 tig0012345:+11508 None:intergenic
ATCTTCCAGATGTGGTTGTC+AGG 0.399237 tig0012345:-13467 Msa1351660:CDS
GCTTGCTCACTTTGTTGAAC+AGG 0.402511 tig0012345:-11869 Msa1351660:intron
CTTGCGGGAATGACTACAAC+TGG 0.403842 tig0012345:-11946 Msa1351660:CDS
CACCGAAGATATCATACAAT+TGG 0.404756 tig0012345:+13017 None:intergenic
CCAGAGATGCTTCTACCATT+AGG 0.405878 tig0012345:-11016 Msa1351660:CDS
GTCTAAAGAACGATTAGATA+TGG 0.411264 tig0012345:-11102 Msa1351660:CDS
TAAGCAAAACCACTGAATTT+GGG 0.413718 tig0012345:-13432 Msa1351660:CDS
GATCCCTCTGACCAACATTT+GGG 0.420366 tig0012345:-13814 Msa1351660:CDS
AATAGAGAAGCCGCAGGTCT+TGG 0.423335 tig0012345:+13618 None:intergenic
CCTCCAGAATGGCGCGTCAC+TGG 0.424652 tig0012345:-13409 Msa1351660:CDS
TGGGTTGGGATAAATAATTA+TGG 0.425124 tig0012345:-12935 Msa1351660:CDS
CAACATTTGGGAGGAGGAGG+TGG 0.430387 tig0012345:-13802 Msa1351660:CDS
CACTGCATTTGACATGCCGC+TGG 0.431194 tig0012345:-12963 Msa1351660:CDS
CCTAATGGTAGAAGCATCTC+TGG 0.431586 tig0012345:+11016 None:intergenic
ATAAGCCTGACAACCACATC+TGG 0.432847 tig0012345:+13462 None:intergenic
CTGTTGTGTACAAAATGTAT+AGG 0.435140 tig0012345:-10794 Msa1351660:three_prime_UTR
CTTGAGAAGTGCGTCGAACC+TGG 0.435619 tig0012345:-13235 Msa1351660:CDS
CAATGTGTGGTTCGATGAAC+AGG 0.438367 tig0012345:-10972 Msa1351660:three_prime_UTR
TCTCTGAGAGTTCTTTCAAC+AGG 0.443737 tig0012345:-11281 Msa1351660:CDS
GGAATCTATGATGACTGAAC+TGG 0.447437 tig0012345:-10995 Msa1351660:exon
ATTTCGTTGAGGCTTAGTTT+GGG 0.449059 tig0012345:+13495 None:intergenic
CGGATGGGAAGATATGCATC+TGG 0.452008 tig0012345:+11242 None:intergenic
CAAAATGTTAGCCTCAAAAC+AGG 0.452685 tig0012345:-11536 Msa1351660:CDS
TGCCGCTGGGGATATGGGTT+GGG 0.453477 tig0012345:-12949 Msa1351660:CDS
TGACATGCCGCTGGGGATAT+GGG 0.454706 tig0012345:-12954 Msa1351660:CDS
GTTTGGGTTGATGATTTGGC+AGG 0.459466 tig0012345:+13511 None:intergenic
TAAACGGTTGTTTGCATCAA+GGG 0.461284 tig0012345:+13072 None:intergenic
TTGTTGTTGGGTCCACCAAA+TGG 0.463735 tig0012345:+13725 None:intergenic
TACTTTGTTTGTCACCGTGC+TGG 0.469337 tig0012345:-13541 Msa1351660:CDS
TAAATTAACAATGTGTCGAT+TGG 0.471898 tig0012345:+12017 None:intergenic
CATTTGGGAGGAGGAGGTGG+AGG 0.472758 tig0012345:-13799 Msa1351660:CDS
TCAGTAAAAGGCAAATATCC+AGG 0.474275 tig0012345:+13217 None:intergenic
ATCCAATTGTATGATATCTT+CGG 0.477575 tig0012345:-13019 Msa1351660:CDS
GGAAACATTTGACCGATGTA+TGG 0.479605 tig0012345:+13679 None:intergenic
CATGGAATCGCACGCTGCTA+CGG 0.484767 tig0012345:-11507 Msa1351660:CDS
TTGACGACTTTGAACTAGGC+TGG 0.486705 tig0012345:-12071 Msa1351660:CDS
TGAAGCTTCGAAAAGGCAAA+AGG 0.488243 tig0012345:+11476 None:intergenic
GCACATTCTTAACAAATCTA+GGG 0.488962 tig0012345:+13138 None:intergenic
AAATTCCAGAAAATTCAAAC+TGG 0.489969 tig0012345:+11315 None:intergenic
CAGTCATCATAGATTCCTAA+TGG 0.491526 tig0012345:+11001 None:intergenic
ACTCTTTCGGCATGATCGCT+AGG 0.495476 tig0012345:+11173 None:intergenic
CTGAATTTGGGCCTCCAGAA+TGG 0.496915 tig0012345:-13420 Msa1351660:CDS
ATCTAATCGTTCTTTAGACT+TGG 0.498595 tig0012345:+11106 None:intergenic
TCAGTTGACGACTTTGAACT+AGG 0.498779 tig0012345:-12075 Msa1351660:CDS
ACTGCATTTGACATGCCGCT+GGG 0.500632 tig0012345:-12962 Msa1351660:CDS
ATGCAGGAAGGAATCGAACT+TGG 0.504851 tig0012345:+13347 None:intergenic
ATTAACAACCTTTATGGCCC+AGG 0.508147 tig0012345:+12856 None:intergenic
CACCTCCTCCTCCCAAATGT+TGG 0.508316 tig0012345:+13803 None:intergenic
GCTTCAAGAACAACTTGTGT+TGG 0.510259 tig0012345:-11459 Msa1351660:CDS
TTGTGAGAAAGTATGACAAT+TGG 0.510937 tig0012345:-10933 Msa1351660:three_prime_UTR
ATGCCGCTGGGGATATGGGT+TGG 0.515095 tig0012345:-12950 Msa1351660:CDS
TTGTTCTTGAAGCTTCGAAA+AGG 0.515435 tig0012345:+11469 None:intergenic
GCGAAGCGAATTGATTGTTA+GGG 0.515636 tig0012345:-14205 Msa1351660:five_prime_UTR
GACTTTAGAGAGAGGAAACA+TGG 0.522539 tig0012345:-14263 Msa1351660:five_prime_UTR
TAGTAGCAAAGTTTCCGTCT+TGG 0.523045 tig0012345:-12167 Msa1351660:CDS
ACCGTTTAGAAAATATTGCC+TGG 0.526747 tig0012345:-13057 Msa1351660:CDS
TCAAACCACACTCCATTTGG+TGG 0.527504 tig0012345:-13737 Msa1351660:CDS
GAGTAAGATAATGTCTGAAG+AGG 0.527986 tig0012345:-13899 Msa1351660:exon
GTAGCAGCGTGCGATTCCAT+GGG 0.533610 tig0012345:+11509 None:intergenic
CAATTAACGCCTTCATTCAA+CGG 0.534336 tig0012345:-11912 Msa1351660:CDS
CTAAACGGTTGTTTGCATCA+AGG 0.535769 tig0012345:+13071 None:intergenic
TGGAGTGTGGTTTGATGAGA+AGG 0.539574 tig0012345:+13745 None:intergenic
GACCAACATTTGGGAGGAGG+AGG 0.539845 tig0012345:-13805 Msa1351660:CDS
ACTGATACGACGCCATCGGA+TGG 0.541479 tig0012345:+11226 None:intergenic
CTGATACGACGCCATCGGAT+GGG 0.543366 tig0012345:+11227 None:intergenic
TCTGATATAGTTCTGTATGC+AGG 0.547078 tig0012345:+13331 None:intergenic
TACTGCAAGATGAAACTGTC+CGG 0.547112 tig0012345:-12886 Msa1351660:CDS
TGATCAGTTAATATAGTCTG+TGG 0.550040 tig0012345:+12261 None:intergenic
TCCTTATGTTTGCCAAAACA+GGG 0.551056 tig0012345:-13291 Msa1351660:CDS
CCTCCCAAATGTTGGTCAGA+GGG 0.557531 tig0012345:+13811 None:intergenic
GAGACAGAAGAATGGAAACT+TGG 0.557670 tig0012345:+11072 None:intergenic
CAACGCTCCTTCCTCAAGGT+GGG 0.557799 tig0012345:-10893 Msa1351660:three_prime_UTR
TGAACTAGGCTGGAGGGAGA+TGG 0.559599 tig0012345:-12061 Msa1351660:CDS
TATGTAGAGAGGAAAGTGAC+TGG 0.562906 tig0012345:+14179 None:intergenic
ATCATACAATTGGATGGATG+AGG 0.563319 tig0012345:+13027 None:intergenic
TATTTGCATTCTATCAGCCA+TGG 0.563497 tig0012345:-10733 Msa1351660:three_prime_UTR
CAGCTTATAATTCCTTCATG+AGG 0.566205 tig0012345:+11347 None:intergenic
AGACATCACACAAAAGTTGA+AGG 0.566338 tig0012345:-11392 Msa1351660:CDS
TGGCAGGAGTGTTGCCAGCA+CGG 0.567905 tig0012345:+13527 None:intergenic
CCAAAAGTTCATGATTATGG+TGG 0.568510 tig0012345:+13377 None:intergenic
GAAGATATCATACAATTGGA+TGG 0.569457 tig0012345:+13021 None:intergenic
AACGCTCCTTCCTCAAGGTG+GGG 0.573030 tig0012345:-10892 Msa1351660:three_prime_UTR
AGCTTATAATTCCTTCATGA+GGG 0.573229 tig0012345:+11348 None:intergenic
TTCTGGAGGCCCAAATTCAG+TGG 0.573388 tig0012345:+13423 None:intergenic
TCTTATGCGAGACAGAAGAA+TGG 0.582203 tig0012345:+11064 None:intergenic
CGACTTTGAACTAGGCTGGA+GGG 0.582819 tig0012345:-12067 Msa1351660:CDS
AATAGAAAATCTTCCAGATG+TGG 0.584217 tig0012345:-13475 Msa1351660:CDS
GGAAAAGACGGTGTTGGCAA+AGG 0.584524 tig0012345:-13577 Msa1351660:CDS
TCCTCCCAAATGTTGGTCAG+AGG 0.584559 tig0012345:+13810 None:intergenic
ACTTAGAAACCGTTGAATGA+AGG 0.586482 tig0012345:+11903 None:intergenic
TCAACGCTCCTTCCTCAAGG+TGG 0.586724 tig0012345:-10894 Msa1351660:three_prime_UTR
GATAGAATGCAAATAATACA+TGG 0.587982 tig0012345:+10741 None:intergenic
TCTGACCAACATTTGGGAGG+AGG 0.587992 tig0012345:-13808 Msa1351660:CDS
AAGTTCATGATTATGGTGGT+TGG 0.589394 tig0012345:+13381 None:intergenic
ATGCATATCTTCCCATCCGA+TGG 0.597365 tig0012345:-11238 Msa1351660:CDS
AGCACACAGCCAAAGAAGCA+GGG 0.598142 tig0012345:+12908 None:intergenic
GTTTACTGGTCCCCTCATGA+AGG 0.604499 tig0012345:-11359 Msa1351660:CDS
GATGGATGAGGCATACGACC+AGG 0.609900 tig0012345:+13039 None:intergenic
ACGACGCCCCACCTTGAGGA+AGG 0.611875 tig0012345:+10886 None:intergenic
CCAGTGACGCGCCATTCTGG+AGG 0.616513 tig0012345:+13409 None:intergenic
ATATCAACGCTCCTTCCTCA+AGG 0.616758 tig0012345:-10897 Msa1351660:three_prime_UTR
TGATATCTTCGGTGATGCTG+TGG 0.618259 tig0012345:-13008 Msa1351660:CDS
ACCGAAGGAAAAGACGGTGT+TGG 0.619616 tig0012345:-13583 Msa1351660:CDS
TGGGTCCACCAAATGGAGTG+TGG 0.620546 tig0012345:+13732 None:intergenic
GCACACTGATACGACGCCAT+CGG 0.621865 tig0012345:+11222 None:intergenic
TTATGGCCCAGGAAAATGAC+CGG 0.623189 tig0012345:+12867 None:intergenic
GGTAGCAGGTGGATCCATGT+TGG 0.624526 tig0012345:-13878 Msa1351660:CDS
CTGCATTTGACATGCCGCTG+GGG 0.625737 tig0012345:-12961 Msa1351660:CDS
GGATGGGAAGATATGCATCT+GGG 0.625859 tig0012345:+11243 None:intergenic
ATTAGACGTCATCGTACCGA+AGG 0.626176 tig0012345:-13598 Msa1351660:CDS
TCATAAGCAGCATCGTGAGT+GGG 0.627606 tig0012345:+13658 None:intergenic
GGTTTCTAAGTGCACAGACA+CGG 0.627911 tig0012345:-11891 Msa1351660:CDS
TGAAACGACGCCCCACCTTG+AGG 0.628280 tig0012345:+10882 None:intergenic
ATAATGTCTGAAGAGGTAGC+AGG 0.630355 tig0012345:-13892 Msa1351660:CDS
GAAAATGTATGTATGTAGAG+AGG 0.633979 tig0012345:+14168 None:intergenic
GTCATAAGCAGCATCGTGAG+TGG 0.636238 tig0012345:+13657 None:intergenic
TCGAAAAGGCAAAAGGAGTG+AGG 0.641424 tig0012345:+11483 None:intergenic
GCTTATAATTCCTTCATGAG+GGG 0.641658 tig0012345:+11349 None:intergenic
CCCTCTGACCAACATTTGGG+AGG 0.646262 tig0012345:-13811 Msa1351660:CDS
ACGTCTAATAGAGAAGCCGC+AGG 0.646866 tig0012345:+13612 None:intergenic
ACGACTTTGAACTAGGCTGG+AGG 0.648729 tig0012345:-12068 Msa1351660:CDS
TAGCAGCGTGCGATTCCATG+GGG 0.649314 tig0012345:+11510 None:intergenic
ATGTCTGAAGAGGTAGCAGG+TGG 0.649630 tig0012345:-13889 Msa1351660:CDS
ATATAGTTCTGTATGCAGGA+AGG 0.660408 tig0012345:+13335 None:intergenic
AGAACAGCATTGAACCAAGA+CGG 0.662125 tig0012345:+12153 None:intergenic
CATCATCACATTCCATACAT+CGG 0.667453 tig0012345:-13691 Msa1351660:CDS
TGAACGCTACAATAACTGGA+AGG 0.669181 tig0012345:-12127 Msa1351660:CDS
CATCGTACCGAAGGAAAAGA+CGG 0.676411 tig0012345:-13589 Msa1351660:CDS
GTCATCATAAACTACCAACA+TGG 0.680695 tig0012345:+13864 None:intergenic
ATCCCAACCCATATCCCCAG+CGG 0.701870 tig0012345:+12947 None:intergenic
ATGACTGAACTGGCAATGTG+TGG 0.712539 tig0012345:-10985 Msa1351660:three_prime_UTR
CATCACACAAAAGTTGAAGG+AGG 0.714854 tig0012345:-11389 Msa1351660:CDS
TGTGTGGTTCGATGAACAGG+TGG 0.731352 tig0012345:-10969 Msa1351660:three_prime_UTR
AGCAGCGTGCGATTCCATGG+GGG 0.736419 tig0012345:+11511 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTCCAATTTTATAAAA+TGG - tig0012345:12417-12436 Msa1351660:intron 10.0%
!!! TTTATTCCAATTTTATAAAA+TGG - tig0012345:12417-12436 Msa1351660:intron 10.0%
!! AAAAAGAAAAGAAAAGAAAA+CGG - tig0012345:10703-10722 Msa1351660:three_prime_UTR 15.0%
!! AAATTGGAATAAAAAGAAAT+GGG + tig0012345:12410-12429 None:intergenic 15.0%
!! AAAATTGGAATAAAAAGAAA+TGG + tig0012345:12411-12430 None:intergenic 15.0%
!! AAATTGGAATAAAAAGAAAT+GGG + tig0012345:12410-12429 None:intergenic 15.0%
!! AAAATTGGAATAAAAAGAAA+TGG + tig0012345:12411-12430 None:intergenic 15.0%
!!! ATGTTTTGATTTTTTTACAT+TGG - tig0012345:13173-13192 Msa1351660:CDS 15.0%
!!! CATTCATTTGAAATTGAAAT+TGG + tig0012345:10774-10793 None:intergenic 20.0%
!! ATAATGAATGAATTGGAAAA+AGG + tig0012345:10886-10905 None:intergenic 20.0%
!! TTAAGCAATAATGAATGAAT+TGG + tig0012345:10893-10912 None:intergenic 20.0%
!!! TAGTAGAATTATACTTGTTT+TGG - tig0012345:11019-11038 Msa1351660:CDS 20.0%
!!! GTGTACTCAAATTTAAAATT+AGG + tig0012345:11907-11926 None:intergenic 20.0%
!!! TTATTGATTAACAACCTTTA+TGG + tig0012345:12151-12170 None:intergenic 20.0%
!!! ATTCTTTTCTGAAATAATAC+TGG - tig0012345:12227-12246 Msa1351660:CDS 20.0%
!! TCTCTACATACATACATTTT+CGG - tig0012345:10832-10851 Msa1351660:three_prime_UTR 25.0%
!! ATATTTGCCTTTTACTGAAA+AGG - tig0012345:11786-11805 Msa1351660:intron 25.0%
!! GATCTAATTTTCTAAATGAC+TGG + tig0012345:11828-11847 None:intergenic 25.0%
! AAGAATGTGCAGAAATATTA+AGG - tig0012345:11873-11892 Msa1351660:CDS 25.0%
! ATCCAATTGTATGATATCTT+CGG - tig0012345:11979-11998 Msa1351660:CDS 25.0%
! TTATTAGCGTCTATATCATT+TGG - tig0012345:12172-12191 Msa1351660:CDS 25.0%
!!! TTTTGATTCAAATTGTGTTG+TGG - tig0012345:12196-12215 Msa1351660:CDS 25.0%
! TATTTCAGAAAAGAATCCAA+GGG + tig0012345:12223-12242 None:intergenic 25.0%
! TTATTTCAGAAAAGAATCCA+AGG + tig0012345:12224-12243 None:intergenic 25.0%
! AAAAAAAACAAACTAGCACA+AGG + tig0012345:12387-12406 None:intergenic 25.0%
!! CCTTCACCATTTTATAAAAT+TGG + tig0012345:12426-12445 None:intergenic 25.0%
!! CCAATTTTATAAAATGGTGA+AGG - tig0012345:12423-12442 Msa1351660:intron 25.0%
! AATTTATGAACATTCCACAA+GGG + tig0012345:12491-12510 None:intergenic 25.0%
! AAATTTATGAACATTCCACA+AGG + tig0012345:12492-12511 None:intergenic 25.0%
!! CCTTCACCATTTTATAAAAT+TGG + tig0012345:12426-12445 None:intergenic 25.0%
!! CCAATTTTATAAAATGGTGA+AGG - tig0012345:12423-12442 Msa1351660:intron 25.0%
! AATTTATGAACATTCCACAA+GGG + tig0012345:12491-12510 None:intergenic 25.0%
! AAATTTATGAACATTCCACA+AGG + tig0012345:12492-12511 None:intergenic 25.0%
!! AACCATTCTTTAATTTACAC+TGG - tig0012345:12660-12679 Msa1351660:intron 25.0%
! AACCAGTGTAAATTAAAGAA+TGG + tig0012345:12665-12684 None:intergenic 25.0%
!!! CTTTCTTAGGTTTTATGAAT+GGG - tig0012345:12708-12727 Msa1351660:intron 25.0%
!! TAAATTAACAATGTGTCGAT+TGG + tig0012345:12984-13003 None:intergenic 25.0%
! ATTTAGTATCTCCAAAAAGT+AGG + tig0012345:13339-13358 None:intergenic 25.0%
!!! GTTGATTTTAAAGATCAAAC+TGG - tig0012345:13411-13430 Msa1351660:CDS 25.0%
! AAATTCCAGAAAATTCAAAC+TGG + tig0012345:13686-13705 None:intergenic 25.0%
!!! AATTTTCTGGAATTTTGTGT+AGG - tig0012345:13691-13710 Msa1351660:CDS 25.0%
!!! TTTTGAAGAATCTTAGAAGA+AGG + tig0012345:13801-13820 None:intergenic 25.0%
! AGTTAAGCTATTCCAAAATA+TGG - tig0012345:13845-13864 Msa1351660:CDS 25.0%
!! TTAGAGATGAAACCATATTT+TGG + tig0012345:13860-13879 None:intergenic 25.0%
!! GTCGTTTCAAATTATTTTCA+TGG - tig0012345:14130-14149 Msa1351660:intron 25.0%
!! ATGGTGAAATTTCTTTAGAA+TGG - tig0012345:14149-14168 Msa1351660:intron 25.0%
! GATAGAATGCAAATAATACA+TGG + tig0012345:14260-14279 None:intergenic 25.0%
GAAAATGTATGTATGTAGAG+AGG + tig0012345:10833-10852 None:intergenic 30.0%
ACTACTACTACTACTACATA+CGG + tig0012345:10997-11016 None:intergenic 30.0%
! GAAGATTTTCTATTTCGTTG+AGG + tig0012345:11517-11536 None:intergenic 30.0%
AATAGAAAATCTTCCAGATG+TGG - tig0012345:11523-11542 Msa1351660:CDS 30.0%
ATAAGCAAAACCACTGAATT+TGG - tig0012345:11565-11584 Msa1351660:CDS 30.0%
TAAGCAAAACCACTGAATTT+GGG - tig0012345:11566-11585 Msa1351660:CDS 30.0%
GTTCCAAAAGTTCATGATTA+TGG + tig0012345:11627-11646 None:intergenic 30.0%
TATCAGATGCTGACAAAAAT+CGG - tig0012345:11683-11702 Msa1351660:intron 30.0%
TCATCAAATGATGAGACTTA+TGG - tig0012345:11738-11757 Msa1351660:intron 30.0%
GCACATTCTTAACAAATCTA+GGG + tig0012345:11863-11882 None:intergenic 30.0%
TGCACATTCTTAACAAATCT+AGG + tig0012345:11864-11883 None:intergenic 30.0%
! ACCAGGCAATATTTTCTAAA+CGG + tig0012345:11945-11964 None:intergenic 30.0%
GAAGATATCATACAATTGGA+TGG + tig0012345:11980-11999 None:intergenic 30.0%
! TGGGTTGGGATAAATAATTA+TGG - tig0012345:12063-12082 Msa1351660:CDS 30.0%
ATTTCAGAAAAGAATCCAAG+GGG + tig0012345:12222-12241 None:intergenic 30.0%
!! TTTCTGAAATAATACTGGTG+TGG - tig0012345:12232-12251 Msa1351660:CDS 30.0%
ATAAAAAAACTGCACTGTCT+TGG - tig0012345:12302-12321 Msa1351660:intron 30.0%
GATTTGTATTAACCTCCATT+TGG + tig0012345:12333-12352 None:intergenic 30.0%
!!! CTTTTATTTTTACTCCCTTG+TGG - tig0012345:12474-12493 Msa1351660:intron 30.0%
GGAAAAAAAAAACTAGCACA+AGG + tig0012345:12526-12545 None:intergenic 30.0%
!!! CTTTTATTTTTACTCCCTTG+TGG - tig0012345:12474-12493 Msa1351660:intron 30.0%
!!! GGTTTTTTTATTCACCTTCT+TGG - tig0012345:12681-12700 Msa1351660:intron 30.0%
! TTTTTATTCACCTTCTTGGT+AGG - tig0012345:12685-12704 Msa1351660:intron 30.0%
!! GCTTTCTTAGGTTTTATGAA+TGG - tig0012345:12707-12726 Msa1351660:intron 30.0%
TGATCAGTTAATATAGTCTG+TGG + tig0012345:12740-12759 None:intergenic 30.0%
AGAAAATGGCTTCTTAGATA+TGG + tig0012345:13034-13053 None:intergenic 30.0%
CAATGATCATTCACATTTCA+TGG - tig0012345:13201-13220 Msa1351660:CDS 30.0%
!! GTGAACTTTATCCTACTTTT+TGG - tig0012345:13325-13344 Msa1351660:CDS 30.0%
CCAAAATTCACAGAAAGATA+AGG + tig0012345:13362-13381 None:intergenic 30.0%
! CCTTATCTTTCTGTGAATTT+TGG - tig0012345:13359-13378 Msa1351660:CDS 30.0%
AGCTTATAATTCCTTCATGA+GGG + tig0012345:13653-13672 None:intergenic 30.0%
TTGGAATAGCTTAACTCTTT+CGG + tig0012345:13841-13860 None:intergenic 30.0%
ATCTAATCGTTCTTTAGACT+TGG + tig0012345:13895-13914 None:intergenic 30.0%
GTCTAAAGAACGATTAGATA+TGG - tig0012345:13896-13915 Msa1351660:exon 30.0%
! TTGTGAGAAAGTATGACAAT+TGG - tig0012345:14065-14084 Msa1351660:intron 30.0%
CTGTTGTGTACAAAATGTAT+AGG - tig0012345:14204-14223 Msa1351660:five_prime_UTR 30.0%
TGTGGTAATTAAGCAGCAAA+AGG + tig0012345:10919-10938 None:intergenic 35.0%
TCAAAGTAAATTCACGAGTG+TGG + tig0012345:10942-10961 None:intergenic 35.0%
GAGTAAGATAATGTCTGAAG+AGG - tig0012345:11099-11118 Msa1351660:CDS 35.0%
GTCATCATAAACTACCAACA+TGG + tig0012345:11137-11156 None:intergenic 35.0%
! GAGTTGTTGTTGTTGTTGTT+GGG + tig0012345:11288-11307 None:intergenic 35.0%
! TGAGTTGTTGTTGTTGTTGT+TGG + tig0012345:11289-11308 None:intergenic 35.0%
CATCATCACATTCCATACAT+CGG - tig0012345:11307-11326 Msa1351660:CDS 35.0%
!! CTTAGTTTGGGTTGATGATT+TGG + tig0012345:11494-11513 None:intergenic 35.0%
ATTTCGTTGAGGCTTAGTTT+GGG + tig0012345:11506-11525 None:intergenic 35.0%
TATTTCGTTGAGGCTTAGTT+TGG + tig0012345:11507-11526 None:intergenic 35.0%
AAGTTCATGATTATGGTGGT+TGG + tig0012345:11620-11639 None:intergenic 35.0%
CCAAAAGTTCATGATTATGG+TGG + tig0012345:11624-11643 None:intergenic 35.0%
! CCACCATAATCATGAACTTT+TGG - tig0012345:11621-11640 Msa1351660:intron 35.0%
! ATATAGTTCTGTATGCAGGA+AGG + tig0012345:11666-11685 None:intergenic 35.0%
! TCTGATATAGTTCTGTATGC+AGG + tig0012345:11670-11689 None:intergenic 35.0%
ATCCTTATGTTTGCCAAAAC+AGG - tig0012345:11706-11725 Msa1351660:intron 35.0%
TCCTTATGTTTGCCAAAACA+GGG - tig0012345:11707-11726 Msa1351660:intron 35.0%
! ATGAACAGAAATCCCTGTTT+TGG + tig0012345:11722-11741 None:intergenic 35.0%
TCAGTAAAAGGCAAATATCC+AGG + tig0012345:11784-11803 None:intergenic 35.0%
! CTTACGTCCTTTTCAGTAAA+AGG + tig0012345:11796-11815 None:intergenic 35.0%
! CTTTTACTGAAAAGGACGTA+AGG - tig0012345:11794-11813 Msa1351660:intron 35.0%
! AAATCTAGGGTTTCTTCTTC+TGG + tig0012345:11850-11869 None:intergenic 35.0%
TAAACGGTTGTTTGCATCAA+GGG + tig0012345:11929-11948 None:intergenic 35.0%
ACCGTTTAGAAAATATTGCC+TGG - tig0012345:11941-11960 Msa1351660:CDS 35.0%
ATCATACAATTGGATGGATG+AGG + tig0012345:11974-11993 None:intergenic 35.0%
CACCGAAGATATCATACAAT+TGG + tig0012345:11984-12003 None:intergenic 35.0%
ACTGTCTTGGATATACCAAA+TGG - tig0012345:12315-12334 Msa1351660:intron 35.0%
ACAAATCAAAGCCTACACTT+TGG - tig0012345:12346-12365 Msa1351660:intron 35.0%
TGCATACATTTCCAAAGTGT+AGG + tig0012345:12360-12379 None:intergenic 35.0%
!! CTTAGGTTTTATGAATGGGA+AGG - tig0012345:12712-12731 Msa1351660:intron 35.0%
CAAAACATGCTTTCTGCATA+TGG - tig0012345:12804-12823 Msa1351660:intron 35.0%
!! TCTAAGAAGCCATTTTCTTG+CGG - tig0012345:13036-13055 Msa1351660:CDS 35.0%
CAATTAACGCCTTCATTCAA+CGG - tig0012345:13086-13105 Msa1351660:CDS 35.0%
ACTTAGAAACCGTTGAATGA+AGG + tig0012345:13098-13117 None:intergenic 35.0%
!!! CTGTTTTGAGGCTAACATTT+TGG + tig0012345:13464-13483 None:intergenic 35.0%
! CAAAATGTTAGCCTCAAAAC+AGG - tig0012345:13462-13481 Msa1351660:CDS 35.0%
TTGTTCTTGAAGCTTCGAAA+AGG + tig0012345:13532-13551 None:intergenic 35.0%
!!! GCATCTTTTTCAGTTGAAGA+TGG - tig0012345:13573-13592 Msa1351660:CDS 35.0%
AGACATCACACAAAAGTTGA+AGG - tig0012345:13606-13625 Msa1351660:CDS 35.0%
GCTTATAATTCCTTCATGAG+GGG + tig0012345:13652-13671 None:intergenic 35.0%
CAGCTTATAATTCCTTCATG+AGG + tig0012345:13654-13673 None:intergenic 35.0%
! TGTCACCAGTTTGAATTTTC+TGG - tig0012345:13678-13697 Msa1351660:CDS 35.0%
CTGGCACATTGTAATGAAAT+TGG + tig0012345:13966-13985 None:intergenic 35.0%
CAGTCATCATAGATTCCTAA+TGG + tig0012345:14000-14019 None:intergenic 35.0%
TATTTGCATTCTATCAGCCA+TGG - tig0012345:14265-14284 Msa1351660:five_prime_UTR 35.0%
! TCTCCTCTTTTTATTGACCA+TGG + tig0012345:14285-14304 None:intergenic 35.0%
TGGTCAATAAAAAGAGGAGA+CGG - tig0012345:14285-14304 Msa1351660:five_prime_UTR 35.0%
!! GCGTTTTAGACTTTAGAGAG+AGG - tig0012345:10727-10746 Msa1351660:three_prime_UTR 40.0%
! GACTTTAGAGAGAGGAAACA+TGG - tig0012345:10735-10754 Msa1351660:three_prime_UTR 40.0%
TGCGAAGCGAATTGATTGTT+AGG - tig0012345:10792-10811 Msa1351660:three_prime_UTR 40.0%
GCGAAGCGAATTGATTGTTA+GGG - tig0012345:10793-10812 Msa1351660:three_prime_UTR 40.0%
TATGTAGAGAGGAAAGTGAC+TGG + tig0012345:10822-10841 None:intergenic 40.0%
ATAATGTCTGAAGAGGTAGC+AGG - tig0012345:11106-11125 Msa1351660:CDS 40.0%
TCATCAAACCACACTCCATT+TGG - tig0012345:11258-11277 Msa1351660:CDS 40.0%
GGAAACATTTGACCGATGTA+TGG + tig0012345:11322-11341 None:intergenic 40.0%
!!! TCCCTGTTTTGGCAAACATA+AGG + tig0012345:11711-11730 None:intergenic 40.0%
CTAAACGGTTGTTTGCATCA+AGG + tig0012345:11930-11949 None:intergenic 40.0%
TACTGCAAGATGAAACTGTC+CGG - tig0012345:12112-12131 Msa1351660:CDS 40.0%
ATTAACAACCTTTATGGCCC+AGG + tig0012345:12145-12164 None:intergenic 40.0%
GTCTTGGATATACCAAATGG+AGG - tig0012345:12318-12337 Msa1351660:intron 40.0%
TAGTAGCAAAGTTTCCGTCT+TGG - tig0012345:12831-12850 Msa1351660:intron 40.0%
! AGAACAGCATTGAACCAAGA+CGG + tig0012345:12848-12867 None:intergenic 40.0%
TCTTGGTTCAATGCTGTTCT+AGG - tig0012345:12848-12867 Msa1351660:intron 40.0%
TAGGTGAACGCTACAATAAC+TGG - tig0012345:12867-12886 Msa1351660:CDS 40.0%
TGAACGCTACAATAACTGGA+AGG - tig0012345:12871-12890 Msa1351660:CDS 40.0%
TCAGTTGACGACTTTGAACT+AGG - tig0012345:12923-12942 Msa1351660:CDS 40.0%
!! CTAAGAAGCCATTTTCTTGC+GGG - tig0012345:13037-13056 Msa1351660:CDS 40.0%
TAGTCATTCCCGCAAGAAAA+TGG + tig0012345:13048-13067 None:intergenic 40.0%
!! ATTTTGGAGATTCTGCTGCA+TGG + tig0012345:13448-13467 None:intergenic 40.0%
TGAAGCTTCGAAAAGGCAAA+AGG + tig0012345:13525-13544 None:intergenic 40.0%
GCTTCAAGAACAACTTGTGT+TGG - tig0012345:13539-13558 Msa1351660:CDS 40.0%
CATCACACAAAAGTTGAAGG+AGG - tig0012345:13609-13628 Msa1351660:CDS 40.0%
! TCTCTGAGAGTTCTTTCAAC+AGG - tig0012345:13717-13736 Msa1351660:CDS 40.0%
GAGACAGAAGAATGGAAACT+TGG + tig0012345:13929-13948 None:intergenic 40.0%
TCTTATGCGAGACAGAAGAA+TGG + tig0012345:13937-13956 None:intergenic 40.0%
GGAATCTATGATGACTGAAC+TGG - tig0012345:14003-14022 Msa1351660:intron 40.0%
CAGCCATGGTCAATAAAAAG+AGG - tig0012345:14279-14298 Msa1351660:five_prime_UTR 40.0%
CAATAAAAAGAGGAGACGGT+TGG - tig0012345:14289-14308 Msa1351660:five_prime_UTR 40.0%
GTAAATTCACGAGTGTGGTG+TGG + tig0012345:10937-10956 None:intergenic 45.0%
TGATCCCTCTGACCAACATT+TGG - tig0012345:11183-11202 Msa1351660:CDS 45.0%
GATCCCTCTGACCAACATTT+GGG - tig0012345:11184-11203 Msa1351660:CDS 45.0%
TGGAGTGTGGTTTGATGAGA+AGG + tig0012345:11256-11275 None:intergenic 45.0%
TCAAACCACACTCCATTTGG+TGG - tig0012345:11261-11280 Msa1351660:CDS 45.0%
! TTGTTGTTGGGTCCACCAAA+TGG + tig0012345:11276-11295 None:intergenic 45.0%
TCATAAGCAGCATCGTGAGT+GGG + tig0012345:11343-11362 None:intergenic 45.0%
! ACTCATTTTGCCAAGACCTG+CGG - tig0012345:11370-11389 Msa1351660:CDS 45.0%
ATTAGACGTCATCGTACCGA+AGG - tig0012345:11400-11419 Msa1351660:CDS 45.0%
CATCGTACCGAAGGAAAAGA+CGG - tig0012345:11409-11428 Msa1351660:CDS 45.0%
! TACTTTGTTTGTCACCGTGC+TGG - tig0012345:11457-11476 Msa1351660:CDS 45.0%
!! GTTTGGGTTGATGATTTGGC+AGG + tig0012345:11490-11509 None:intergenic 45.0%
ATCTTCCAGATGTGGTTGTC+AGG - tig0012345:11531-11550 Msa1351660:CDS 45.0%
ATAAGCCTGACAACCACATC+TGG + tig0012345:11539-11558 None:intergenic 45.0%
GGAAGGAATCGAACTTGGTT+TGG + tig0012345:11649-11668 None:intergenic 45.0%
ATGCAGGAAGGAATCGAACT+TGG + tig0012345:11654-11673 None:intergenic 45.0%
TGATATCTTCGGTGATGCTG+TGG - tig0012345:11990-12009 Msa1351660:CDS 45.0%
TATGGAATGCCCTGCTTCTT+TGG - tig0012345:12081-12100 Msa1351660:CDS 45.0%
!! AAACTGTCCGGTCATTTTCC+TGG - tig0012345:12124-12143 Msa1351660:CDS 45.0%
!! AACTGTCCGGTCATTTTCCT+GGG - tig0012345:12125-12144 Msa1351660:CDS 45.0%
TTATGGCCCAGGAAAATGAC+CGG + tig0012345:12134-12153 None:intergenic 45.0%
!! GTCATTTTCCTGGGCCATAA+AGG - tig0012345:12134-12153 Msa1351660:CDS 45.0%
CCTAAGAAAGCCTACCAAGA+AGG + tig0012345:12698-12717 None:intergenic 45.0%
CCTTCTTGGTAGGCTTTCTT+AGG - tig0012345:12695-12714 Msa1351660:intron 45.0%
TTGACGACTTTGAACTAGGC+TGG - tig0012345:12927-12946 Msa1351660:CDS 45.0%
! AGGGAGATGGTCTGTTCTTT+TGG - tig0012345:12950-12969 Msa1351660:CDS 45.0%
! GGGAGATGGTCTGTTCTTTT+GGG - tig0012345:12951-12970 Msa1351660:CDS 45.0%
TATATAGCTCGCGCTCACTT+TGG - tig0012345:13002-13021 Msa1351660:CDS 45.0%
ATATAGCTCGCGCTCACTTT+GGG - tig0012345:13003-13022 Msa1351660:CDS 45.0%
GGTTTCTAAGTGCACAGACA+CGG - tig0012345:13107-13126 Msa1351660:CDS 45.0%
GCTTGCTCACTTTGTTGAAC+AGG - tig0012345:13129-13148 Msa1351660:CDS 45.0%
! TTTGGTTCGCTTTGCACAAC+AGG - tig0012345:13377-13396 Msa1351660:CDS 45.0%
TCGAAAAGGCAAAAGGAGTG+AGG + tig0012345:13518-13537 None:intergenic 45.0%
GGATGGGAAGATATGCATCT+GGG + tig0012345:13758-13777 None:intergenic 45.0%
ATGCATATCTTCCCATCCGA+TGG - tig0012345:13760-13779 Msa1351660:CDS 45.0%
!! CCTAATGGTAGAAGCATCTC+TGG + tig0012345:13985-14004 None:intergenic 45.0%
CCAGAGATGCTTCTACCATT+AGG - tig0012345:13982-14001 Msa1351660:intron 45.0%
ATGACTGAACTGGCAATGTG+TGG - tig0012345:14013-14032 Msa1351660:intron 45.0%
CAATGTGTGGTTCGATGAAC+AGG - tig0012345:14026-14045 Msa1351660:intron 45.0%
ATATCAACGCTCCTTCCTCA+AGG - tig0012345:14101-14120 Msa1351660:intron 45.0%
ATGTCTGAAGAGGTAGCAGG+TGG - tig0012345:11109-11128 Msa1351660:CDS 50.0%
CCTCCCAAATGTTGGTCAGA+GGG + tig0012345:11190-11209 None:intergenic 50.0%
TCCTCCCAAATGTTGGTCAG+AGG + tig0012345:11191-11210 None:intergenic 50.0%
TCTGACCAACATTTGGGAGG+AGG - tig0012345:11190-11209 Msa1351660:CDS 50.0%
GTCATAAGCAGCATCGTGAG+TGG + tig0012345:11344-11363 None:intergenic 50.0%
AATAGAGAAGCCGCAGGTCT+TGG + tig0012345:11383-11402 None:intergenic 50.0%
ACGTCTAATAGAGAAGCCGC+AGG + tig0012345:11389-11408 None:intergenic 50.0%
ACCGAAGGAAAAGACGGTGT+TGG - tig0012345:11415-11434 Msa1351660:CDS 50.0%
! GCCAACACCGTCTTTTCCTT+CGG + tig0012345:11419-11438 None:intergenic 50.0%
!! GGAAAAGACGGTGTTGGCAA+AGG - tig0012345:11421-11440 Msa1351660:CDS 50.0%
! TTCTGGAGGCCCAAATTCAG+TGG + tig0012345:11578-11597 None:intergenic 50.0%
CTGAATTTGGGCCTCCAGAA+TGG - tig0012345:11578-11597 Msa1351660:CDS 50.0%
ACTGCATTTGACATGCCGCT+GGG - tig0012345:12036-12055 Msa1351660:CDS 50.0%
AGCACACAGCCAAAGAAGCA+GGG + tig0012345:12093-12112 None:intergenic 50.0%
TAGCACACAGCCAAAGAAGC+AGG + tig0012345:12094-12113 None:intergenic 50.0%
CAAATTGTGTTGTGGCCCCT+TGG - tig0012345:12204-12223 Msa1351660:CDS 50.0%
!! TGGTGAAGGTACTTCAGCTG+TGG - tig0012345:12574-12593 Msa1351660:intron 50.0%
ACGACTTTGAACTAGGCTGG+AGG - tig0012345:12930-12949 Msa1351660:CDS 50.0%
CGACTTTGAACTAGGCTGGA+GGG - tig0012345:12931-12950 Msa1351660:CDS 50.0%
CTTGCGGGAATGACTACAAC+TGG - tig0012345:13052-13071 Msa1351660:CDS 50.0%
AAGGAGGTCGCAGAGTTTAC+TGG - tig0012345:13625-13644 Msa1351660:CDS 50.0%
GTTTACTGGTCCCCTCATGA+AGG - tig0012345:13639-13658 Msa1351660:CDS 50.0%
CGGATGGGAAGATATGCATC+TGG + tig0012345:13759-13778 None:intergenic 50.0%
ACTCTTTCGGCATGATCGCT+AGG + tig0012345:13828-13847 None:intergenic 50.0%
TGTGTGGTTCGATGAACAGG+TGG - tig0012345:14029-14048 Msa1351660:intron 50.0%
GGTAGCAGGTGGATCCATGT+TGG - tig0012345:11120-11139 Msa1351660:CDS 55.0%
CCCTCTGACCAACATTTGGG+AGG - tig0012345:11187-11206 Msa1351660:CDS 55.0%
GACCAACATTTGGGAGGAGG+AGG - tig0012345:11193-11212 Msa1351660:CDS 55.0%
CACCTCCTCCTCCCAAATGT+TGG + tig0012345:11198-11217 None:intergenic 55.0%
CAACATTTGGGAGGAGGAGG+TGG - tig0012345:11196-11215 Msa1351660:CDS 55.0%
TGGGTCCACCAAATGGAGTG+TGG + tig0012345:11269-11288 None:intergenic 55.0%
AAACCAGTGACGCGCCATTC+TGG + tig0012345:11595-11614 None:intergenic 55.0%
! CTTGAGAAGTGCGTCGAACC+TGG - tig0012345:11763-11782 Msa1351660:intron 55.0%
GATGGATGAGGCATACGACC+AGG + tig0012345:11962-11981 None:intergenic 55.0%
CACTGCATTTGACATGCCGC+TGG - tig0012345:12035-12054 Msa1351660:CDS 55.0%
CTGCATTTGACATGCCGCTG+GGG - tig0012345:12037-12056 Msa1351660:CDS 55.0%
TTGACATGCCGCTGGGGATA+TGG - tig0012345:12043-12062 Msa1351660:CDS 55.0%
TGACATGCCGCTGGGGATAT+GGG - tig0012345:12044-12063 Msa1351660:CDS 55.0%
ATCCCAACCCATATCCCCAG+CGG + tig0012345:12054-12073 None:intergenic 55.0%
! TGGTGAAGGTACGTCAGCTG+TGG - tig0012345:12437-12456 Msa1351660:intron 55.0%
TGAACTAGGCTGGAGGGAGA+TGG - tig0012345:12937-12956 Msa1351660:CDS 55.0%
TAGCAGCGTGCGATTCCATG+GGG + tig0012345:13491-13510 None:intergenic 55.0%
GTAGCAGCGTGCGATTCCAT+GGG + tig0012345:13492-13511 None:intergenic 55.0%
CATGGAATCGCACGCTGCTA+CGG - tig0012345:13491-13510 Msa1351660:CDS 55.0%
CTGATACGACGCCATCGGAT+GGG + tig0012345:13774-13793 None:intergenic 55.0%
ACTGATACGACGCCATCGGA+TGG + tig0012345:13775-13794 None:intergenic 55.0%
GCACACTGATACGACGCCAT+CGG + tig0012345:13779-13798 None:intergenic 55.0%
TCAACGCTCCTTCCTCAAGG+TGG - tig0012345:14104-14123 Msa1351660:intron 55.0%
CAACGCTCCTTCCTCAAGGT+GGG - tig0012345:14105-14124 Msa1351660:intron 55.0%
AACGCTCCTTCCTCAAGGTG+GGG - tig0012345:14106-14125 Msa1351660:intron 55.0%
CATTTGGGAGGAGGAGGTGG+AGG - tig0012345:11199-11218 Msa1351660:CDS 60.0%
!! TGGCAGGAGTGTTGCCAGCA+CGG + tig0012345:11474-11493 None:intergenic 60.0%
ATGCCGCTGGGGATATGGGT+TGG - tig0012345:12048-12067 Msa1351660:CDS 60.0%
TGCCGCTGGGGATATGGGTT+GGG - tig0012345:12049-12068 Msa1351660:CDS 60.0%
! CCATGGGGGCTCCTGTTTTG+AGG + tig0012345:13476-13495 None:intergenic 60.0%
CCTCAAAACAGGAGCCCCCA+TGG - tig0012345:13473-13492 Msa1351660:CDS 60.0%
AGCAGCGTGCGATTCCATGG+GGG + tig0012345:13490-13509 None:intergenic 60.0%
CGTAGCAGCGTGCGATTCCA+TGG + tig0012345:13493-13512 None:intergenic 60.0%
TGAAACGACGCCCCACCTTG+AGG + tig0012345:14119-14138 None:intergenic 60.0%
TTGGGAGGAGGAGGTGGAGG+AGG - tig0012345:11202-11221 Msa1351660:CDS 65.0%
CCAGTGACGCGCCATTCTGG+AGG + tig0012345:11592-11611 None:intergenic 65.0%
CCTCCAGAATGGCGCGTCAC+TGG - tig0012345:11589-11608 Msa1351660:CDS 65.0%
ACGACGCCCCACCTTGAGGA+AGG + tig0012345:14115-14134 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0012345 gene 10701 14319 10701 ID=Msa1351660;Name=Msa1351660
tig0012345 mRNA 10701 14319 10701 ID=Msa1351660-mRNA-1;Parent=Msa1351660;Name=Msa1351660-mRNA-1;_AED=0.09;_eAED=0.09;_QI=167|1|1|1|0.66|0.5|4|306|701
tig0012345 exon 10701 11621 10701 ID=Msa1351660-mRNA-1:exon:7814;Parent=Msa1351660-mRNA-1
tig0012345 exon 11870 12313 11870 ID=Msa1351660-mRNA-1:exon:7813;Parent=Msa1351660-mRNA-1
tig0012345 exon 12865 13925 12865 ID=Msa1351660-mRNA-1:exon:7812;Parent=Msa1351660-mRNA-1
tig0012345 exon 14167 14319 14167 ID=Msa1351660-mRNA-1:exon:7811;Parent=Msa1351660-mRNA-1
tig0012345 five_prime_UTR 14167 14319 14167 ID=Msa1351660-mRNA-1:five_prime_utr;Parent=Msa1351660-mRNA-1
tig0012345 five_prime_UTR 13912 13925 13912 ID=Msa1351660-mRNA-1:five_prime_utr;Parent=Msa1351660-mRNA-1
tig0012345 CDS 12865 13911 12865 ID=Msa1351660-mRNA-1:cds;Parent=Msa1351660-mRNA-1
tig0012345 CDS 11870 12313 11870 ID=Msa1351660-mRNA-1:cds;Parent=Msa1351660-mRNA-1
tig0012345 CDS 11007 11621 11007 ID=Msa1351660-mRNA-1:cds;Parent=Msa1351660-mRNA-1
tig0012345 three_prime_UTR 10701 11006 10701 ID=Msa1351660-mRNA-1:three_prime_utr;Parent=Msa1351660-mRNA-1
Gene Sequence

>Msa1351660

ATGTCTGAAGAGGTAGCAGGTGGATCCATGTTGGTAGTTTATGATGACGATGATATTGATGTTGATGTTGACGATGATCCCTCTGACCAACATTTGGGAGGAGGAGGTGGAGGAGGATGCGATACAAGCAGCACAGAAGACTCTCCTTCTCATCAAACCACACTCCATTTGGTGGACCCAACAACAACAACAACAACTCATCATCACATTCCATACATCGGTCAAATGTTTCCCACTCACGATGCTGCTTATGACTTCTATACTCATTTTGCCAAGACCTGCGGCTTCTCTATTAGACGTCATCGTACCGAAGGAAAAGACGGTGTTGGCAAAGGACTTACTAGACGCTACTTTGTTTGTCACCGTGCTGGCAACACTCCTGCCAAATCATCAACCCAAACTAAGCCTCAACGAAATAGAAAATCTTCCAGATGTGGTTGTCAGGCTTATATGCGCATAAGCAAAACCACTGAATTTGGGCCTCCAGAATGGCGCGTCACTGGTTTTGCCAACCACCATAATCATGAACTTTTGGAACCAAACCAAGTTCGATTCCTTCCTGCATACAGAACTATATCAGATGCTGACAAAAATCGGATCCTTATGTTTGCCAAAACAGGGATTTCTGTTCATCAAATGATGAGACTTATGGAGCTTGAGAAGTGCGTCGAACCTGGATATTTGCCTTTTACTGAAAAGGACGTAAGGAATTTACTCCAGTCATTTAGAAAATTAGATCCAGAAGAAGAAACCCTAGATTTGTTAAGAATGTGCAGAAATATTAAGGACAAAGATCCTAATTTTAAATTTGAGTACACCCTTGATGCAAACAACCGTTTAGAAAATATTGCCTGGTCGTATGCCTCATCCATCCAATTGTATGATATCTTCGGTGATGCTGTGGTGTTTGATACAACACATCGTCTCACTGCATTTGACATGCCGCTGGGGATATGGGTTGGGATAAATAATTATGGAATGCCCTGCTTCTTTGGCTGTGTGCTACTGCAAGATGAAACTGTCCGGTCATTTTCCTGGGCCATAAAGGCTTTCTTAGGTTTTATGAATGGGAAGGCTCCACAGACTATATTAACTGATCAAAATATTTGTCTCAAAGAAGCACTATCTGCAGAAATGCTGATGACAAAACATGCTTTCTGCATATGGATGATAGTAGCAAAGTTTCCGTCTTGGTTCAATGCTGTTCTAGGTGAACGCTACAATAACTGGAAGGCTGAGTTTTATAGACTTTATAATCTTGAATCAGTTGACGACTTTGAACTAGGCTGGAGGGAGATGGTCTGTTCTTTTGGGCTGCATTCCAATCGACACATTGTTAATTTATATAGCTCGCGCTCACTTTGGGCATTGCCATATCTAAGAAGCCATTTTCTTGCGGGAATGACTACAACTGGTCAGTCAAAGTCAATTAACGCCTTCATTCAACGGTTTCTAAGTGCACAGACACGGCTTGCTCACTTTGTTGAACAGGCAGCTGTTGCTGTTGATTTTAAAGATCAAACTGGTGAACAACAAACCATGCAGCAGAATCTCCAAAATGTTAGCCTCAAAACAGGAGCCCCCATGGAATCGCACGCTGCTACGGTCCTCACTCCTTTTGCCTTTTCGAAGCTTCAAGAACAACTTGTGTTGGCTGCACATTATGCATCTTTTTCAGTTGAAGATGGTTTTCTTGTGAGACATCACACAAAAGTTGAAGGAGGTCGCAGAGTTTACTGGTCCCCTCATGAAGGAATTATAAGCTGCAGCTGTCACCAGTTTGAATTTTCTGGAATTTTGTGTAGGCACTCTCTGAGAGTTCTTTCAACAGGAAATTGCTTTCAAATCCCAGATGCATATCTTCCCATCCGATGGCGTCGTATCAGTGTGCCTTCTTCTAAGATTCTTCAAAATGCACCTAGCGATCATGCCGAAAGAGTTAAGCTATTCCAAAATATGGTTTCATCTCTAATTACAGAATCTGCCAAGTCTAAAGAACGATTAGATATGGCAACAGACCAAGTTTCCATTCTTCTGTCTCGCATAAGAGAGCAACCAATTTCATTACAATGTGCCAGAGATGCTTCTACCATTAGGAATCTATGA
Protein sequence

>Msa1351660

MSEEVAGGSMLVVYDDDDIDVDVDDDPSDQHLGGGGGGGCDTSSTEDSPSHQTTLHLVDPTTTTTTHHHIPYIGQMFPTHDAAYDFYTHFAKTCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPAKSSTQTKPQRNRKSSRCGCQAYMRISKTTEFGPPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEETLDLLRMCRNIKDKDPNFKFEYTLDANNRLENIAWSYASSIQLYDIFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCVLLQDETVRSFSWAIKAFLGFMNGKAPQTILTDQNICLKEALSAEMLMTKHAFCIWMIVAKFPSWFNAVLGERYNNWKAEFYRLYNLESVDDFELGWREMVCSFGLHSNRHIVNLYSSRSLWALPYLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQAAVAVDFKDQTGEQQTMQQNLQNVSLKTGAPMESHAATVLTPFAFSKLQEQLVLAAHYASFSVEDGFLVRHHTKVEGGRRVYWSPHEGIISCSCHQFEFSGILCRHSLRVLSTGNCFQIPDAYLPIRWRRISVPSSKILQNAPSDHAERVKLFQNMVSSLITESAKSKERLDMATDQVSILLSRIREQPISLQCARDASTIRNL*