AlfalfaGEDB | Msa1351660

M. sativa cultivar zhongmu-4 / Msa1351660

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1351660	XP_024631917.1	97.863	702	12	2	1	701	1	700	0.0	1445

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1351660	sp\|Q9SY66\|FRS11_ARATH	75.362	690	149	3	8	697	6	674	0.0	1118

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1351660	A0A396J3X5	97.863	702	12	2	1	701	1	700	0.0	1445

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TFs/TRs:

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Gene ID	Type	Classification
Msa1351660	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0270050	Msa1351660	0.846814	1.715099e-59	-8.615850e-47
Msa1351660	Msa1375040	0.834891	2.305052e-56	-8.615850e-47
Msa1351660	Msa1392310	0.838562	2.672140e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1351660	MtrunA17_Chr2g0276841	97.863	702	12	2	1	701	1	700	0.0	1445
Msa1351660	MtrunA17_Chr2g0294841	58.511	658	251	5	41	688	22	667	0.0	808
Msa1351660	MtrunA17_Chr1g0198761	45.692	650	330	5	57	686	21	667	0.0	610
Msa1351660	MtrunA17_Chr2g0290391	43.109	624	335	5	71	682	51	666	0.0	533
Msa1351660	MtrunA17_Chr5g0431001	50.000	426	208	2	70	490	60	485	1.36e-153	454
Msa1351660	MtrunA17_Chr5g0448761	29.495	634	416	14	71	682	60	684	4.45e-80	271
Msa1351660	MtrunA17_Chr2g0329031	27.014	633	425	16	77	700	20	624	3.38e-74	254
Msa1351660	MtrunA17_Chr1g0207551	29.538	606	362	15	71	648	34	602	1.25e-71	248
Msa1351660	MtrunA17_Chr1g0202341	28.169	568	385	10	71	627	51	606	7.37e-71	244
Msa1351660	MtrunA17_Chr5g0440451	29.310	580	362	12	71	625	43	599	3.69e-67	238

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1351660	AT1G10240.2	75.362	690	149	3	8	697	6	674	0.0	1118
Msa1351660	AT1G10240.1	75.362	690	149	3	8	697	6	674	0.0	1118
Msa1351660	AT5G28530.1	41.810	641	353	7	58	683	39	674	7.35e-175	516
Msa1351660	AT5G28530.3	41.810	641	349	7	58	683	39	670	1.15e-174	515
Msa1351660	AT5G28530.2	41.810	641	349	7	58	683	39	670	1.15e-174	515
Msa1351660	AT5G28530.4	38.193	631	327	9	58	683	39	611	3.94e-140	424
Msa1351660	AT5G28530.5	38.193	631	323	9	58	683	39	607	7.09e-140	424
Msa1351660	AT4G38180.1	29.794	678	440	13	15	672	22	683	3.26e-84	283
Msa1351660	AT4G15090.1	29.516	620	400	14	71	671	51	652	6.13e-77	264
Msa1351660	AT4G15090.5	29.516	620	400	14	71	671	51	652	6.13e-77	264

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Find 173 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGTGACGCGCCATTC+TGG	0.316021	tig0012345:+13406	None:intergenic
AAATCTAGGGTTTCTTCTTC+TGG	0.296205	tig0012345:+13151	None:intergenic
AAATTCCAGAAAATTCAAAC+TGG	0.489969	tig0012345:+11315	None:intergenic
AACGCTCCTTCCTCAAGGTG+GGG	0.573030	tig0012345:-10892	Msa1351660:three_prime_UTR
AAGAATGTGCAGAAATATTA+AGG	0.303262	tig0012345:-13125	Msa1351660:CDS
AAGGAGGTCGCAGAGTTTAC+TGG	0.359371	tig0012345:-11373	Msa1351660:CDS
AAGTTCATGATTATGGTGGT+TGG	0.589394	tig0012345:+13381	None:intergenic
AATAGAAAATCTTCCAGATG+TGG	0.584217	tig0012345:-13475	Msa1351660:CDS
AATAGAGAAGCCGCAGGTCT+TGG	0.423335	tig0012345:+13618	None:intergenic
ACCGAAGGAAAAGACGGTGT+TGG	0.619616	tig0012345:-13583	Msa1351660:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAATGTATGTATGTAGAG+AGG	+	tig0012345:10833-10852	None:intergenic	30.0%
ACTACTACTACTACTACATA+CGG	+	tig0012345:10997-11016	None:intergenic	30.0%
AATAGAAAATCTTCCAGATG+TGG	-	tig0012345:11523-11542	Msa1351660:CDS	30.0%
ATAAGCAAAACCACTGAATT+TGG	-	tig0012345:11565-11584	Msa1351660:CDS	30.0%
TAAGCAAAACCACTGAATTT+GGG	-	tig0012345:11566-11585	Msa1351660:CDS	30.0%
GTTCCAAAAGTTCATGATTA+TGG	+	tig0012345:11627-11646	None:intergenic	30.0%
TATCAGATGCTGACAAAAAT+CGG	-	tig0012345:11683-11702	Msa1351660:intron	30.0%
TCATCAAATGATGAGACTTA+TGG	-	tig0012345:11738-11757	Msa1351660:intron	30.0%
GCACATTCTTAACAAATCTA+GGG	+	tig0012345:11863-11882	None:intergenic	30.0%
TGCACATTCTTAACAAATCT+AGG	+	tig0012345:11864-11883	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0012345	gene	10701	14319	10701	ID=Msa1351660;Name=Msa1351660
tig0012345	mRNA	10701	14319	10701	ID=Msa1351660-mRNA-1;Parent=Msa1351660;Name=Msa1351660-mRNA-1;_AED=0.09;_eAED=0.09;_QI=167\|1\|1\|1\|0.66\|0.5\|4\|306\|701
tig0012345	exon	10701	11621	10701	ID=Msa1351660-mRNA-1:exon:7814;Parent=Msa1351660-mRNA-1
tig0012345	exon	11870	12313	11870	ID=Msa1351660-mRNA-1:exon:7813;Parent=Msa1351660-mRNA-1
tig0012345	exon	12865	13925	12865	ID=Msa1351660-mRNA-1:exon:7812;Parent=Msa1351660-mRNA-1
tig0012345	exon	14167	14319	14167	ID=Msa1351660-mRNA-1:exon:7811;Parent=Msa1351660-mRNA-1
tig0012345	five_prime_UTR	14167	14319	14167	ID=Msa1351660-mRNA-1:five_prime_utr;Parent=Msa1351660-mRNA-1
tig0012345	five_prime_UTR	13912	13925	13912	ID=Msa1351660-mRNA-1:five_prime_utr;Parent=Msa1351660-mRNA-1
tig0012345	CDS	12865	13911	12865	ID=Msa1351660-mRNA-1:cds;Parent=Msa1351660-mRNA-1
tig0012345	CDS	11870	12313	11870	ID=Msa1351660-mRNA-1:cds;Parent=Msa1351660-mRNA-1
tig0012345	CDS	11007	11621	11007	ID=Msa1351660-mRNA-1:cds;Parent=Msa1351660-mRNA-1
tig0012345	three_prime_UTR	10701	11006	10701	ID=Msa1351660-mRNA-1:three_prime_utr;Parent=Msa1351660-mRNA-1

Gene Sequence

>Msa1351660

ATGTCTGAAGAGGTAGCAGGTGGATCCATGTTGGTAGTTTATGATGACGATGATATTGATGTTGATGTTGACGATGATCCCTCTGACCAACATTTGGGAGGAGGAGGTGGAGGAGGATGCGATACAAGCAGCACAGAAGACTCTCCTTCTCATCAAACCACACTCCATTTGGTGGACCCAACAACAACAACAACAACTCATCATCACATTCCATACATCGGTCAAATGTTTCCCACTCACGATGCTGCTTATGACTTCTATACTCATTTTGCCAAGACCTGCGGCTTCTCTATTAGACGTCATCGTACCGAAGGAAAAGACGGTGTTGGCAAAGGACTTACTAGACGCTACTTTGTTTGTCACCGTGCTGGCAACACTCCTGCCAAATCATCAACCCAAACTAAGCCTCAACGAAATAGAAAATCTTCCAGATGTGGTTGTCAGGCTTATATGCGCATAAGCAAAACCACTGAATTTGGGCCTCCAGAATGGCGCGTCACTGGTTTTGCCAACCACCATAATCATGAACTTTTGGAACCAAACCAAGTTCGATTCCTTCCTGCATACAGAACTATATCAGATGCTGACAAAAATCGGATCCTTATGTTTGCCAAAACAGGGATTTCTGTTCATCAAATGATGAGACTTATGGAGCTTGAGAAGTGCGTCGAACCTGGATATTTGCCTTTTACTGAAAAGGACGTAAGGAATTTACTCCAGTCATTTAGAAAATTAGATCCAGAAGAAGAAACCCTAGATTTGTTAAGAATGTGCAGAAATATTAAGGACAAAGATCCTAATTTTAAATTTGAGTACACCCTTGATGCAAACAACCGTTTAGAAAATATTGCCTGGTCGTATGCCTCATCCATCCAATTGTATGATATCTTCGGTGATGCTGTGGTGTTTGATACAACACATCGTCTCACTGCATTTGACATGCCGCTGGGGATATGGGTTGGGATAAATAATTATGGAATGCCCTGCTTCTTTGGCTGTGTGCTACTGCAAGATGAAACTGTCCGGTCATTTTCCTGGGCCATAAAGGCTTTCTTAGGTTTTATGAATGGGAAGGCTCCACAGACTATATTAACTGATCAAAATATTTGTCTCAAAGAAGCACTATCTGCAGAAATGCTGATGACAAAACATGCTTTCTGCATATGGATGATAGTAGCAAAGTTTCCGTCTTGGTTCAATGCTGTTCTAGGTGAACGCTACAATAACTGGAAGGCTGAGTTTTATAGACTTTATAATCTTGAATCAGTTGACGACTTTGAACTAGGCTGGAGGGAGATGGTCTGTTCTTTTGGGCTGCATTCCAATCGACACATTGTTAATTTATATAGCTCGCGCTCACTTTGGGCATTGCCATATCTAAGAAGCCATTTTCTTGCGGGAATGACTACAACTGGTCAGTCAAAGTCAATTAACGCCTTCATTCAACGGTTTCTAAGTGCACAGACACGGCTTGCTCACTTTGTTGAACAGGCAGCTGTTGCTGTTGATTTTAAAGATCAAACTGGTGAACAACAAACCATGCAGCAGAATCTCCAAAATGTTAGCCTCAAAACAGGAGCCCCCATGGAATCGCACGCTGCTACGGTCCTCACTCCTTTTGCCTTTTCGAAGCTTCAAGAACAACTTGTGTTGGCTGCACATTATGCATCTTTTTCAGTTGAAGATGGTTTTCTTGTGAGACATCACACAAAAGTTGAAGGAGGTCGCAGAGTTTACTGGTCCCCTCATGAAGGAATTATAAGCTGCAGCTGTCACCAGTTTGAATTTTCTGGAATTTTGTGTAGGCACTCTCTGAGAGTTCTTTCAACAGGAAATTGCTTTCAAATCCCAGATGCATATCTTCCCATCCGATGGCGTCGTATCAGTGTGCCTTCTTCTAAGATTCTTCAAAATGCACCTAGCGATCATGCCGAAAGAGTTAAGCTATTCCAAAATATGGTTTCATCTCTAATTACAGAATCTGCCAAGTCTAAAGAACGATTAGATATGGCAACAGACCAAGTTTCCATTCTTCTGTCTCGCATAAGAGAGCAACCAATTTCATTACAATGTGCCAGAGATGCTTCTACCATTAGGAATCTATGA

Protein sequence

>Msa1351660

MSEEVAGGSMLVVYDDDDIDVDVDDDPSDQHLGGGGGGGCDTSSTEDSPSHQTTLHLVDPTTTTTTHHHIPYIGQMFPTHDAAYDFYTHFAKTCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPAKSSTQTKPQRNRKSSRCGCQAYMRISKTTEFGPPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEETLDLLRMCRNIKDKDPNFKFEYTLDANNRLENIAWSYASSIQLYDIFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCVLLQDETVRSFSWAIKAFLGFMNGKAPQTILTDQNICLKEALSAEMLMTKHAFCIWMIVAKFPSWFNAVLGERYNNWKAEFYRLYNLESVDDFELGWREMVCSFGLHSNRHIVNLYSSRSLWALPYLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQAAVAVDFKDQTGEQQTMQQNLQNVSLKTGAPMESHAATVLTPFAFSKLQEQLVLAAHYASFSVEDGFLVRHHTKVEGGRRVYWSPHEGIISCSCHQFEFSGILCRHSLRVLSTGNCFQIPDAYLPIRWRRISVPSSKILQNAPSDHAERVKLFQNMVSSLITESAKSKERLDMATDQVSILLSRIREQPISLQCARDASTIRNL*