AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0271320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0271320 MtrunA17_Chr2g0278561 93.893 262 6 1 1 252 3 264 2.51e-176 491
Msa0271320 MtrunA17_Chr2g0278541 59.387 261 91 3 7 252 6 266 1.02e-103 307
Msa0271320 MtrunA17_Chr2g0278551 55.985 259 103 2 4 252 3 260 8.25e-97 289
Msa0271320 MtrunA17_Chr2g0290611 53.668 259 109 2 4 252 3 260 1.51e-92 277
Msa0271320 MtrunA17_Chr4g0050891 50.943 265 116 3 1 252 1 264 6.81e-90 271
Msa0271320 MtrunA17_Chr4g0050941 53.077 260 107 4 7 251 6 265 3.59e-87 265
Msa0271320 MtrunA17_Chr2g0332001 50.588 255 111 3 9 252 34 284 3.50e-82 252
Msa0271320 MtrunA17_Chr4g0051021 47.857 280 133 3 4 271 3 281 7.39e-81 248
Msa0271320 MtrunA17_Chr4g0051001 46.182 275 138 1 7 271 25 299 6.86e-79 241
Msa0271320 MtrunA17_Chr4g0050881 47.410 251 121 2 12 252 8 257 3.71e-74 230
Msa0271320 MtrunA17_Chr2g0278031 81.746 126 20 1 4 126 2 127 6.18e-70 211
Msa0271320 MtrunA17_Chr4g0050931 43.182 264 97 4 3 252 2 226 3.31e-67 211
Msa0271320 MtrunA17_Chr2g0278021 77.143 140 18 3 127 252 1 140 5.92e-63 199
Msa0271320 MtrunA17_Chr2g0284261 35.102 245 154 2 13 252 8 252 1.62e-48 164
Msa0271320 MtrunA17_Chr7g0255561 34.091 264 162 4 1 252 1 264 8.43e-48 163
Msa0271320 MtrunA17_Chr7g0255581 34.091 264 162 4 1 252 1 264 8.43e-48 163
Msa0271320 MtrunA17_Chr8g0354121 37.308 260 147 4 7 252 7 264 1.09e-47 163
Msa0271320 MtrunA17_Chr7g0271561 36.015 261 149 3 14 260 8 264 6.54e-47 160
Msa0271320 MtrunA17_Chr6g0463971 35.206 267 162 4 7 263 10 275 2.33e-45 156
Msa0271320 MtrunA17_Chr3g0081421 36.508 252 148 3 13 252 17 268 2.92e-45 157
Msa0271320 MtrunA17_Chr3g0081511 35.743 249 151 2 13 252 17 265 5.01e-45 156
Msa0271320 MtrunA17_Chr1g0211801 34.387 253 146 4 13 252 11 256 6.79e-45 152
Msa0271320 MtrunA17_Chr1g0164831 35.887 248 149 3 13 252 3 248 7.98e-44 151
Msa0271320 MtrunA17_Chr3g0129571 34.118 255 151 5 12 251 6 258 9.64e-42 146
Msa0271320 MtrunA17_Chr3g0129591 35.573 253 150 4 12 251 4 256 1.08e-40 144
Msa0271320 MtrunA17_Chr3g0114691 33.579 271 161 4 2 260 9 272 3.94e-39 140
Msa0271320 MtrunA17_Chr1g0160171 33.977 259 160 2 9 260 12 266 9.44e-39 139
Msa0271320 MtrunA17_Chr7g0263101 34.749 259 157 5 10 260 10 264 1.44e-38 139
Msa0271320 MtrunA17_Chr3g0129581 34.902 255 149 6 12 251 4 256 1.91e-38 138
Msa0271320 MtrunA17_Chr3g0114731 33.466 251 158 3 13 258 18 264 9.17e-38 137
Msa0271320 MtrunA17_Chr1g0182291 33.077 260 164 3 7 260 9 264 2.12e-37 135
Msa0271320 MtrunA17_Chr1g0186561 34.413 247 155 3 7 246 10 256 4.32e-37 134
Msa0271320 MtrunA17_Chr8g0334761 34.146 246 148 4 6 240 3 245 5.56e-37 134
Msa0271320 MtrunA17_Chr3g0129601 33.333 261 160 3 2 251 20 277 6.92e-37 134
Msa0271320 MtrunA17_Chr1g0186601 30.970 268 179 3 10 271 13 280 7.43e-37 133
Msa0271320 MtrunA17_Chr1g0186611 33.725 255 163 3 4 252 7 261 1.19e-35 130
Msa0271320 MtrunA17_Chr1g0186571 32.171 258 169 2 1 252 1 258 1.86e-35 130
Msa0271320 MtrunA17_Chr1g0160111 32.143 252 154 3 22 260 16 263 2.06e-35 130
Msa0271320 MtrunA17_Chr6g0483401 32.231 242 153 3 22 252 19 260 5.52e-34 126
Msa0271320 MtrunA17_Chr1g0186641 31.008 258 172 3 1 252 1 258 1.49e-33 124
Msa0271320 MtrunA17_Chr2g0310441 31.915 235 152 3 14 240 11 245 1.94e-32 122
Msa0271320 MtrunA17_Chr1g0184221 30.000 270 168 3 8 260 11 276 4.06e-32 121
Msa0271320 MtrunA17_Chr1g0155761 30.797 276 166 3 2 252 10 285 1.13e-31 120
Msa0271320 MtrunA17_Chr8g0383731 34.127 252 153 2 13 251 5 256 1.33e-31 119
Msa0271320 MtrunA17_Chr3g0114701 33.600 250 156 2 13 252 9 258 4.11e-31 119
Msa0271320 MtrunA17_Chr3g0142131 29.963 267 167 2 6 252 13 279 9.04e-31 118
Msa0271320 MtrunA17_Chr1g0171301 31.496 254 164 4 8 252 11 263 1.17e-30 117
Msa0271320 MtrunA17_Chr5g0441761 28.750 240 163 2 18 252 19 255 1.68e-30 116
Msa0271320 MtrunA17_Chr1g0160181 33.200 250 157 3 13 252 18 267 5.54e-30 116
Msa0271320 MtrunA17_Chr5g0428881 28.745 247 166 1 16 252 21 267 1.34e-29 115
Msa0271320 MtrunA17_Chr1g0177221 30.924 249 161 3 13 252 18 264 1.39e-29 112
Msa0271320 MtrunA17_Chr4g0073241 31.621 253 163 4 9 252 4 255 3.18e-29 113
Msa0271320 MtrunA17_Chr8g0334711 33.333 204 117 4 9 199 6 203 5.19e-28 107
Msa0271320 MtrunA17_Chr8g0334751 33.054 239 144 4 14 240 12 246 1.38e-27 108
Msa0271320 MtrunA17_Chr8g0334771 31.227 269 171 4 14 271 11 276 8.60e-27 107
Msa0271320 MtrunA17_Chr4g0059311 28.090 267 182 4 14 271 12 277 1.88e-26 105
Msa0271320 MtrunA17_Chr5g0413961 29.804 255 162 4 7 251 8 255 6.68e-26 104
Msa0271320 MtrunA17_Chr1g0150151 31.418 261 164 6 14 261 12 270 1.74e-25 103
Msa0271320 MtrunA17_Chr3g0114711 25.667 300 176 4 2 258 3 298 6.36e-25 102
Msa0271320 MtrunA17_Chr4g0050911 44.275 131 57 3 88 202 6 136 2.97e-24 95.9
Msa0271320 MtrunA17_Chr5g0407971 29.008 262 163 3 13 252 11 271 3.29e-24 100
Msa0271320 MtrunA17_Chr3g0126101 30.120 249 158 4 14 252 7 249 6.33e-24 99.0
Msa0271320 MtrunA17_Chr6g0451261 27.642 246 169 4 12 249 10 254 8.22e-23 97.8
Msa0271320 MtrunA17_Chr5g0407991 29.572 257 158 4 18 252 14 269 4.47e-22 94.4
Msa0271320 MtrunA17_Chr6g0451211 29.482 251 154 6 14 249 13 255 5.01e-22 94.0
Msa0271320 MtrunA17_Chr5g0413921 29.297 256 166 5 8 252 2 253 9.77e-22 92.8
Msa0271320 MtrunA17_Chr5g0408031 29.104 268 163 5 10 252 7 272 1.39e-21 92.8
Msa0271320 MtrunA17_Chr7g0227921 27.419 248 170 5 10 249 8 253 1.70e-21 92.4
Msa0271320 MtrunA17_Chr6g0451251 29.004 231 145 7 31 249 30 253 4.83e-21 91.3
Msa0271320 MtrunA17_Chr5g0413941 27.559 254 173 5 8 252 2 253 5.93e-21 90.9
Msa0271320 MtrunA17_Chr5g0408041 28.571 266 163 5 12 252 10 273 1.37e-20 90.1
Msa0271320 MtrunA17_Chr3g0084091 30.233 172 112 2 89 252 6 177 3.11e-20 88.2
Msa0271320 MtrunA17_Chr5g0404801 41.667 108 63 0 18 125 12 119 3.34e-20 84.0
Msa0271320 MtrunA17_Chr8g0369841 27.016 248 153 4 18 240 14 258 4.12e-20 89.0
Msa0271320 MtrunA17_Chr6g0451201 29.004 231 142 6 31 249 30 250 8.59e-20 87.8
Msa0271320 MtrunA17_Chr6g0451171 26.613 248 162 6 14 249 13 252 1.39e-19 87.0
Msa0271320 MtrunA17_Chr5g0413951 27.490 251 171 4 11 252 5 253 1.73e-18 84.0
Msa0271320 MtrunA17_Chr5g0408001 28.897 263 162 5 13 252 10 270 2.15e-18 84.0
Msa0271320 MtrunA17_Chr4g0050901 55.000 60 27 0 7 66 6 65 9.87e-18 75.5
Msa0271320 MtrunA17_Chr5g0429001 25.616 203 133 3 65 252 3 202 1.71e-17 80.9
Msa0271320 MtrunA17_Chr8g0334731 30.612 196 106 5 14 199 12 187 6.39e-17 77.0
Msa0271320 MtrunA17_Chr3g0126091 22.394 259 183 3 14 258 12 266 2.75e-16 77.8
Msa0271320 MtrunA17_Chr5g0413931 27.200 250 165 5 15 252 8 252 2.34e-15 75.1
Msa0271320 MtrunA17_Chr4g0050921 58.824 51 21 0 202 252 1 51 2.57e-15 70.9
Msa0271320 MtrunA17_Chr5g0399281 26.609 233 146 7 18 234 13 236 4.61e-14 71.2
Msa0271320 MtrunA17_Chr4g0056081 26.033 242 156 5 18 244 19 252 1.08e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0271320 AT1G68170.2 39.615 260 147 1 3 252 2 261 3.06e-56 185
Msa0271320 AT1G68170.1 40.637 251 139 1 12 252 1 251 6.11e-55 181
Msa0271320 AT1G25270.1 39.608 255 135 4 12 252 1 250 6.63e-55 181
Msa0271320 AT4G01440.4 35.772 246 151 1 14 252 10 255 1.89e-48 162
Msa0271320 AT4G01440.3 35.772 246 151 1 14 252 10 255 9.74e-48 161
Msa0271320 AT4G01440.1 35.772 246 151 1 14 252 10 255 2.13e-47 162
Msa0271320 AT3G56620.1 35.849 265 166 3 10 271 7 270 7.12e-47 160
Msa0271320 AT1G09380.1 37.647 255 138 3 14 252 8 257 2.30e-45 157
Msa0271320 AT5G07050.1 36.187 257 145 5 13 252 17 271 3.42e-44 154
Msa0271320 AT5G13670.1 35.409 257 155 3 13 258 7 263 1.76e-43 152
Msa0271320 AT2G40900.1 36.437 247 151 2 10 252 7 251 2.83e-43 152
Msa0271320 AT2G37460.1 34.231 260 161 4 7 260 8 263 2.11e-42 149
Msa0271320 AT3G30340.2 34.274 248 155 2 13 252 10 257 5.16e-42 145
Msa0271320 AT3G30340.1 34.274 248 155 2 13 252 10 257 2.51e-41 146
Msa0271320 AT1G11450.4 35.798 257 150 4 7 252 9 261 3.88e-41 144
Msa0271320 AT4G01450.4 35.510 245 153 2 14 254 10 253 5.34e-41 142
Msa0271320 AT1G11450.3 35.798 257 150 4 7 252 9 261 1.29e-40 144
Msa0271320 AT4G08290.2 34.137 249 155 1 12 251 11 259 2.01e-40 141
Msa0271320 AT2G39510.1 36.719 256 150 4 13 260 7 258 2.45e-40 144
Msa0271320 AT1G11460.1 35.060 251 149 4 13 252 15 262 9.41e-40 141
Msa0271320 AT4G01450.1 35.391 243 152 2 14 252 10 251 9.84e-40 141
Msa0271320 AT3G53210.3 34.335 233 141 2 18 240 14 244 9.88e-40 139
Msa0271320 AT4G01450.2 35.391 243 152 2 14 252 10 251 1.26e-39 141
Msa0271320 AT4G08290.1 34.137 249 155 1 12 251 11 259 1.28e-39 142
Msa0271320 AT3G53210.1 34.335 233 141 2 18 240 14 244 2.05e-38 138
Msa0271320 AT5G64700.2 33.202 253 155 1 13 251 7 259 4.34e-38 135
Msa0271320 AT1G01070.1 32.677 254 162 3 8 252 10 263 5.41e-38 137
Msa0271320 AT5G64700.1 32.812 256 158 1 13 254 7 262 1.67e-37 135
Msa0271320 AT4G08300.1 33.077 260 158 3 12 260 9 263 3.30e-37 135
Msa0271320 AT4G01450.3 36.321 212 130 2 14 221 10 220 2.46e-36 130
Msa0271320 AT1G21890.2 32.342 269 162 2 8 260 5 269 4.15e-36 132
Msa0271320 AT3G18200.2 33.466 251 160 4 8 252 29 278 4.55e-36 132
Msa0271320 AT1G21890.1 32.830 265 158 2 12 260 9 269 1.17e-35 131
Msa0271320 AT4G01430.2 33.466 251 154 4 14 252 9 258 4.31e-35 128
Msa0271320 AT4G01430.1 33.466 251 154 4 14 252 9 258 8.58e-35 129
Msa0271320 AT1G11450.5 35.909 220 126 4 44 252 2 217 1.25e-33 124
Msa0271320 AT4G30420.2 32.549 255 160 4 9 252 4 257 4.42e-33 124
Msa0271320 AT1G43650.2 33.745 243 157 3 13 251 6 248 9.79e-33 121
Msa0271320 AT1G43650.1 33.745 243 157 3 13 251 6 248 4.32e-32 121
Msa0271320 AT1G75500.1 30.943 265 169 2 2 252 8 272 7.17e-32 121
Msa0271320 AT1G75500.2 30.943 265 169 2 2 252 8 272 7.17e-32 121
Msa0271320 AT1G11450.2 36.232 207 117 4 57 252 8 210 6.17e-31 117
Msa0271320 AT1G44800.1 30.233 258 169 3 10 260 7 260 7.77e-31 118
Msa0271320 AT4G30420.1 32.927 246 153 4 18 252 3 247 8.14e-31 118
Msa0271320 AT4G28040.1 32.016 253 149 6 13 254 7 247 7.08e-28 110
Msa0271320 AT4G28040.5 32.016 253 149 6 13 254 7 247 7.08e-28 110
Msa0271320 AT4G28040.3 32.016 253 149 6 13 254 7 247 7.08e-28 110
Msa0271320 AT4G28040.4 32.016 253 149 6 13 254 7 247 7.08e-28 110
Msa0271320 AT4G28040.2 32.016 253 149 6 13 254 7 247 7.08e-28 110
Msa0271320 AT5G45370.1 32.589 224 147 2 18 240 24 244 7.29e-27 107
Msa0271320 AT2G37450.2 30.435 253 145 5 14 260 9 236 4.52e-26 105
Msa0271320 AT5G45370.2 30.204 245 149 3 18 240 24 268 4.73e-25 102
Msa0271320 AT5G45370.4 30.204 245 149 3 18 240 24 268 4.73e-25 102
Msa0271320 AT1G01070.2 32.161 199 126 3 63 252 18 216 2.18e-24 100
Msa0271320 AT5G40240.2 30.588 255 155 7 14 252 34 282 1.67e-22 95.9
Msa0271320 AT5G40240.1 30.588 255 155 7 14 252 20 268 1.91e-22 95.5
Msa0271320 AT5G40240.3 30.588 255 155 7 14 252 20 268 1.91e-22 95.5
Msa0271320 AT5G40230.1 29.688 256 156 4 14 252 21 269 6.08e-22 94.4
Msa0271320 AT4G01440.5 32.653 147 92 1 113 252 1 147 3.21e-21 90.5
Msa0271320 AT4G01440.2 32.653 147 92 1 113 252 1 147 3.21e-21 90.5
Msa0271320 AT3G45870.9 27.941 272 167 6 13 261 11 276 3.53e-21 90.5
Msa0271320 AT3G53210.2 30.625 160 103 1 89 240 28 187 4.88e-21 90.9
Msa0271320 AT3G28050.1 27.711 249 158 6 14 249 12 251 1.50e-20 90.1
Msa0271320 AT3G45870.8 28.287 251 152 5 13 240 11 256 2.01e-20 89.4
Msa0271320 AT3G45870.1 28.455 246 148 5 18 240 16 256 2.86e-20 89.7
Msa0271320 AT1G11450.1 35.465 172 96 4 92 252 2 169 2.98e-20 87.8
Msa0271320 AT5G40210.1 29.915 234 152 6 18 249 17 240 4.53e-19 85.9
Msa0271320 AT4G19185.1 28.679 265 150 6 18 252 25 280 1.10e-18 85.1
Msa0271320 AT4G24980.1 29.231 195 107 3 28 215 1 171 3.70e-18 82.4
Msa0271320 AT4G15540.1 28.512 242 164 4 14 252 17 252 6.01e-18 82.8
Msa0271320 AT4G15540.2 28.512 242 164 4 14 252 17 252 6.01e-18 82.8
Msa0271320 AT1G70260.1 23.438 256 169 4 12 246 10 259 3.68e-17 80.9
Msa0271320 AT5G47470.1 27.273 220 156 4 18 234 34 252 3.91e-16 77.8
Msa0271320 AT5G47470.3 27.273 220 156 4 18 234 62 280 4.47e-16 77.8
Msa0271320 AT5G47470.2 27.273 220 156 4 18 234 62 280 4.63e-16 77.8
Msa0271320 AT1G60050.1 26.800 250 166 5 14 246 13 262 9.44e-15 73.9
Msa0271320 AT3G18200.1 32.886 149 93 4 110 252 1 148 1.70e-14 71.6
Msa0271320 AT3G28100.3 25.000 244 169 5 18 249 18 259 4.63e-14 70.9
Msa0271320 AT3G28100.1 25.000 244 169 5 18 249 18 259 8.19e-14 70.9
Msa0271320 AT4G16620.3 26.009 223 137 5 22 227 20 231 8.98e-14 70.1
Msa0271320 AT4G16620.1 26.009 223 137 5 22 227 20 231 1.59e-13 70.1
Msa0271320 AT2G37450.3 31.515 165 103 4 102 260 4 164 2.46e-13 68.6
Msa0271320 AT3G28070.1 26.639 244 165 7 18 249 21 262 1.55e-11 64.3
Msa0271320 AT3G28070.3 26.639 244 165 7 18 249 21 262 2.20e-11 63.5

Find 81 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCACTGTGGCTTATTATTC+AGG 0.189563 2_3:+2622515 Msa0271320:CDS
GAAGAACAAAATGAAGAAAA+AGG 0.197855 2_3:+2624028 Msa0271320:three_prime_UTR
GATGATGCAAAAGATTTAAA+TGG 0.200514 2_3:-2622410 None:intergenic
GAAGGATGTCACGTTCATTT+TGG 0.209146 2_3:-2623931 None:intergenic
TAAACGATGGCATGAGTTTA+AGG 0.216977 2_3:+2620699 Msa0271320:CDS
TCCACTGCTAATACCATTTC+GGG 0.219336 2_3:+2622459 Msa0271320:CDS
GGATTTGAGTCAGTGGAAAT+TGG 0.225887 2_3:+2622742 Msa0271320:CDS
TTTGAAGCCAACGTTGTTAA+TGG 0.249888 2_3:+2620625 Msa0271320:CDS
CTCCACTGCTAATACCATTT+CGG 0.255958 2_3:+2622458 Msa0271320:CDS
GCTTAGATTTATATCTTTCA+TGG 0.281116 2_3:+2624140 Msa0271320:three_prime_UTR
TGCATGTAATGCCTAAAATA+TGG 0.309367 2_3:+2623869 Msa0271320:three_prime_UTR
TTTATCATGGCCGTTTCCTT+AGG 0.340185 2_3:+2621844 Msa0271320:CDS
GCAGGGAAGGCAAAGATATT+AGG 0.341417 2_3:+2622315 Msa0271320:CDS
GACCTCACAACTATTTCAAC+TGG 0.356060 2_3:-2623696 None:intergenic
ATGTACTTTGCATATATTGT+AGG 0.362990 2_3:-2624210 None:intergenic
TAAGGAAACGGCCATGATAA+AGG 0.377584 2_3:-2621842 None:intergenic
GATTTGAGTCAGTGGAAATT+GGG 0.381331 2_3:+2622743 Msa0271320:CDS
TAATCAAGGTAATACTTTAC+AGG 0.391706 2_3:+2623752 Msa0271320:three_prime_UTR
GCCAACGTTGTTAATGGTTA+TGG 0.393643 2_3:+2620631 Msa0271320:CDS
TTCGGGTTCTCTATGTGCCT+TGG 0.397449 2_3:+2622476 Msa0271320:CDS
GTGGCTTATATGCGGTTGTA+TGG 0.403530 2_3:+2623607 Msa0271320:CDS
AAGATATTAGGTACACTAAC+AGG 0.409574 2_3:+2622327 Msa0271320:CDS
TAAAGGTTACAGCTGGTATA+AGG 0.410418 2_3:-2621825 None:intergenic
TAAAGGTGTTGAAATTAAGA+TGG 0.412574 2_3:+2622380 Msa0271320:intron
TATATGCAAAGTACATCTTC+AGG 0.417199 2_3:+2624217 Msa0271320:three_prime_UTR
TAATACTTTACAGGTGGTTA+AGG 0.419065 2_3:+2623761 Msa0271320:three_prime_UTR
TTAGGTACACTAACAGGAAT+TGG 0.435923 2_3:+2622333 Msa0271320:CDS
TACCTTGATTATTGTTGTTG+TGG 0.442004 2_3:-2623740 None:intergenic
CAGTTGCTTTCATTCTTGAA+AGG 0.443910 2_3:+2620768 Msa0271320:CDS
TTGCATCATCAAAATGGTGT+TGG 0.456326 2_3:+2622423 Msa0271320:CDS
CTTTCAAGAATGAAAGCAAC+TGG 0.456365 2_3:-2620767 None:intergenic
TGAGTCAGTGGAAATTGGGT+TGG 0.467607 2_3:+2622747 Msa0271320:CDS
TTATCATGGCCGTTTCCTTA+GGG 0.467781 2_3:+2621845 Msa0271320:CDS
TAATTGAGTGACCACTTAGC+TGG 0.476526 2_3:+2624078 Msa0271320:three_prime_UTR
ACCAGCTGTAACCTTTATCA+TGG 0.479465 2_3:+2621831 Msa0271320:CDS
TTAAATTTGAGAACAAAAGC+AGG 0.485502 2_3:+2622297 Msa0271320:CDS
ATGGTGCAAATAGCATTTGC+TGG 0.489060 2_3:+2620650 Msa0271320:CDS
ATGTTGCTGAAGTTAAAGTC+AGG 0.496408 2_3:-2621783 None:intergenic
GGCACATAGAGAACCCGAAA+TGG 0.500559 2_3:-2622472 None:intergenic
AAAGGTGTTGAAATTAAGAT+GGG 0.500659 2_3:+2622381 Msa0271320:intron
AACGTGACATCCTTCTAGAT+TGG 0.501879 2_3:+2623939 Msa0271320:three_prime_UTR
AGAAGAGGGCAAAGATGACT+TGG 0.516252 2_3:+2621116 Msa0271320:CDS
ACCATAACCATTAACAACGT+TGG 0.520726 2_3:-2620632 None:intergenic
AACCACAACAACAATAATCA+AGG 0.522875 2_3:+2623738 Msa0271320:three_prime_UTR
GGAGCGGCGTTGATTGTATG+TGG 0.523594 2_3:+2623588 Msa0271320:CDS
TGGCTTATATGCGGTTGTAT+GGG 0.524020 2_3:+2623608 Msa0271320:CDS
TAATACTTACCCTAAGGAAA+CGG 0.528146 2_3:-2621854 None:intergenic
TGCTTGCTCTATGCTTTGAG+AGG 0.528731 2_3:+2622720 Msa0271320:CDS
ACTACTAACCGTTGCTTATG+CGG 0.544164 2_3:+2622778 Msa0271320:CDS
TCAACTGGGTCAAATTCATG+TGG 0.559483 2_3:-2623681 None:intergenic
TTTGAGAACAAAAGCAGGGA+AGG 0.570188 2_3:+2622302 Msa0271320:CDS
GCTTGCTCTATGCTTTGAGA+GGG 0.570984 2_3:+2622721 Msa0271320:CDS
TTGAGAGGGATTTGAGTCAG+TGG 0.577109 2_3:+2622735 Msa0271320:CDS
CAACTGGGTCAAATTCATGT+GGG 0.581445 2_3:-2623680 None:intergenic
AGCAACATTTGCATCCGCAA+TGG 0.581666 2_3:+2621798 Msa0271320:CDS
CAGAGTCAACTCCAGCTAAG+TGG 0.583977 2_3:-2624089 None:intergenic
GCCATGATAAAGGTTACAGC+TGG 0.584742 2_3:-2621832 None:intergenic
AAGCAGTTGCAAATACAAAA+CGG 0.587659 2_3:-2620736 None:intergenic
GGAGAATCAAAATAGTCCGC+TGG 0.588174 2_3:-2623974 None:intergenic
TGGTATAAGGTTGGCCATTG+CGG 0.589106 2_3:-2621812 None:intergenic
ACCCGAAATGGTATTAGCAG+TGG 0.589256 2_3:-2622460 None:intergenic
TAAATTTGAGAACAAAAGCA+GGG 0.592408 2_3:+2622298 Msa0271320:CDS
AATTTGTGTAATGTAGTGCA+AGG 0.592733 2_3:+2620602 Msa0271320:CDS
TATATCAAACTCCTACATGT+TGG 0.596245 2_3:+2623907 Msa0271320:three_prime_UTR
GGTTACAGCTGGTATAAGGT+TGG 0.597282 2_3:-2621821 None:intergenic
TGTTGCTGAAGTTAAAGTCA+GGG 0.602599 2_3:-2621782 None:intergenic
ATAAGAGATGGCACTAGCCA+AGG 0.602961 2_3:-2622493 None:intergenic
GCTGTGCTTGAGTAATGAGT+AGG 0.604756 2_3:-2622662 None:intergenic
AAATTTCAGCATTATTGGAG+CGG 0.614275 2_3:+2623572 Msa0271320:intron
AAGCCACAGTGCATAAGAGA+TGG 0.619720 2_3:-2622505 None:intergenic
AGTTGCAAATACAAAACGGT+AGG 0.621835 2_3:-2620732 None:intergenic
GGCTTATATGCGGTTGTATG+GGG 0.639210 2_3:+2623609 Msa0271320:CDS
CTGTGCTTGAGTAATGAGTA+GGG 0.639868 2_3:-2622661 None:intergenic
ACCTCACAACTATTTCAACT+GGG 0.643907 2_3:-2623695 None:intergenic
ACCCAGTTGAAATAGTTGTG+AGG 0.644210 2_3:+2623694 Msa0271320:three_prime_UTR
TCAAGGTAATACTTTACAGG+TGG 0.650018 2_3:+2623755 Msa0271320:three_prime_UTR
GATTGTATGTGGCTTATATG+CGG 0.657640 2_3:+2623599 Msa0271320:CDS
CTAACATACCGCATAAGCAA+CGG 0.664599 2_3:-2622786 None:intergenic
AAAGCATAGAGCAAGCACAA+TGG 0.664986 2_3:-2622714 None:intergenic
TACAAGTTAGCTGTAAACGA+TGG 0.680743 2_3:+2620686 Msa0271320:CDS
GTGCCATCTCTTATGCACTG+TGG 0.699959 2_3:+2622502 Msa0271320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTATTTTTTTCATGT+AGG + chr2_3:2621728-2621747 Msa0271320:intron 10.0%
!!! TTTATTATTTTTTTCATGTA+GGG + chr2_3:2621729-2621748 Msa0271320:intron 10.0%
!! AAAGATTAAACTATAAAATT+TGG + chr2_3:2621954-2621973 Msa0271320:intron 10.0%
!!! TTGAAGTAATTAATTAATTT+TGG + chr2_3:2622612-2622631 Msa0271320:intron 10.0%
!!! TGAAGTAATTAATTAATTTT+GGG + chr2_3:2622613-2622632 Msa0271320:intron 10.0%
!!! CTATAAGTTTTTTTTTTTTT+TGG + chr2_3:2622841-2622860 Msa0271320:intron 10.0%
!!! TTATTACACTATTTTTATAA+TGG - chr2_3:2623173-2623192 None:intergenic 10.0%
!! ATAAATTTATAAAAGCAAAA+AGG - chr2_3:2623437-2623456 None:intergenic 10.0%
!! AAATCTAATATTTACTTTAT+TGG + chr2_3:2623521-2623540 Msa0271320:intron 10.0%
!! TTTAGTTAATGAGTTAAAAA+TGG - chr2_3:2621651-2621670 None:intergenic 15.0%
!!! TTATTATTTTTTTCATGTAG+GGG + chr2_3:2621730-2621749 Msa0271320:intron 15.0%
!!! TGGACTTTTTTTTTTTTTTA+AGG + chr2_3:2621974-2621993 Msa0271320:intron 15.0%
!!! TAACTTTTAATTTTTCAGTA+TGG + chr2_3:2622269-2622288 Msa0271320:intron 15.0%
!!! TAATTTTCATTGATTGATAT+TGG - chr2_3:2622571-2622590 None:intergenic 15.0%
!! TTATATCCAATGATTAATTA+AGG + chr2_3:2622884-2622903 Msa0271320:intron 15.0%
!! ATAAATCCTTAATTAATCAT+TGG - chr2_3:2622893-2622912 None:intergenic 15.0%
!!! TTTTGTTTTTTATTTTATGG+TGG + chr2_3:2623105-2623124 Msa0271320:intron 15.0%
!! AATGGAGAATAAATAATTCA+TGG + chr2_3:2620832-2620851 Msa0271320:intron 20.0%
!! TTGGGAATTATATTTGTTTA+AGG + chr2_3:2621553-2621572 Msa0271320:intron 20.0%
!! AACTAAATGCTTAAATATGT+TGG + chr2_3:2621664-2621683 Msa0271320:intron 20.0%
!! ACTAAATGCTTAAATATGTT+GGG + chr2_3:2621665-2621684 Msa0271320:intron 20.0%
!! TGTAAACTATGAAATATGAA+TGG - chr2_3:2621698-2621717 None:intergenic 20.0%
!! AGTAACTCGTAAATTATAAT+TGG - chr2_3:2621896-2621915 None:intergenic 20.0%
!! AAGAAAGAGAGTTAATATAT+AGG - chr2_3:2622009-2622028 None:intergenic 20.0%
!!! ATTACGTAATAATTTGCAAA+GGG - chr2_3:2622053-2622072 None:intergenic 20.0%
!!! TATTACGTAATAATTTGCAA+AGG - chr2_3:2622054-2622073 None:intergenic 20.0%
!!! AATTAATTAATTTTGGGTAC+AGG + chr2_3:2622619-2622638 Msa0271320:intron 20.0%
!! AATAAGTCATGTTTAGTTAT+TGG + chr2_3:2623188-2623207 Msa0271320:intron 20.0%
!!! AATGCTGAAATTTTTAACAA+AGG - chr2_3:2623565-2623584 None:intergenic 20.0%
!! GTTAAAAATTTCAGCATTAT+TGG + chr2_3:2623567-2623586 Msa0271320:intron 20.0%
!!! AATTTGATACTCCATATTTT+AGG - chr2_3:2623883-2623902 None:intergenic 20.0%
!!! ATGCTATAATGTATTTTAGT+TGG - chr2_3:2623998-2624017 None:intergenic 20.0%
!! AAGAACAAAATGAAGAAAAA+GGG + chr2_3:2624029-2624048 Msa0271320:three_prime_UTR 20.0%
! TACATACATACATATAGCTT+AGG + chr2_3:2620964-2620983 Msa0271320:intron 25.0%
! ATGTGATTTACTGTCATTAT+TGG - chr2_3:2621012-2621031 None:intergenic 25.0%
!! TTTGCATGAAGATTTTCTTA+TGG + chr2_3:2621228-2621247 Msa0271320:intron 25.0%
!!! TATACTCCAACTATTTTAAG+TGG + chr2_3:2621425-2621444 Msa0271320:intron 25.0%
! TTAAATTTGAGAACAAAAGC+AGG + chr2_3:2622297-2622316 Msa0271320:CDS 25.0%
! TAAATTTGAGAACAAAAGCA+GGG + chr2_3:2622298-2622317 Msa0271320:CDS 25.0%
!!! TAAAGGTGTTGAAATTAAGA+TGG + chr2_3:2622380-2622399 Msa0271320:intron 25.0%
!!! AAAGGTGTTGAAATTAAGAT+GGG + chr2_3:2622381-2622400 Msa0271320:intron 25.0%
! GATGATGCAAAAGATTTAAA+TGG - chr2_3:2622413-2622432 None:intergenic 25.0%
!! AATCTTTTGCATCATCAAAA+TGG + chr2_3:2622417-2622436 Msa0271320:CDS 25.0%
!!! ATTCAGGTTTGATGTTTTTT+TGG + chr2_3:2622531-2622550 Msa0271320:intron 25.0%
! AACTTAAGAAAATGACTTCA+TGG - chr2_3:2622971-2622990 None:intergenic 25.0%
!!! ATGAAGTCATTTTCTTAAGT+TGG + chr2_3:2622970-2622989 Msa0271320:intron 25.0%
!! GATATTTGTCTTGATTTGAT+TGG + chr2_3:2623013-2623032 Msa0271320:intron 25.0%
! CATGTTTAGTTATTGGTATT+TGG + chr2_3:2623195-2623214 Msa0271320:intron 25.0%
! TTGGTTATTAATTCTACTTG+AGG + chr2_3:2623214-2623233 Msa0271320:intron 25.0%
! GAAATACCAAGTTGTTTAAT+TGG + chr2_3:2623479-2623498 Msa0271320:intron 25.0%
! GATTTGACCTCAAAAAATTA+GGG - chr2_3:2623506-2623525 None:intergenic 25.0%
! AGATTTGACCTCAAAAAATT+AGG - chr2_3:2623507-2623526 None:intergenic 25.0%
! TAATCAAGGTAATACTTTAC+AGG + chr2_3:2623752-2623771 Msa0271320:three_prime_UTR 25.0%
! GAAGAACAAAATGAAGAAAA+AGG + chr2_3:2624028-2624047 Msa0271320:three_prime_UTR 25.0%
! GCTTAGATTTATATCTTTCA+TGG + chr2_3:2624140-2624159 Msa0271320:three_prime_UTR 25.0%
! ATGTACTTTGCATATATTGT+AGG - chr2_3:2624213-2624232 None:intergenic 25.0%
AATTTGTGTAATGTAGTGCA+AGG + chr2_3:2620602-2620621 Msa0271320:CDS 30.0%
AAGCAGTTGCAAATACAAAA+CGG - chr2_3:2620739-2620758 None:intergenic 30.0%
TTCACTCTTCTTATGATCAA+TGG + chr2_3:2620814-2620833 Msa0271320:intron 30.0%
ATACATATAGCTTAGGAAAG+TGG + chr2_3:2620971-2620990 Msa0271320:intron 30.0%
ATTCTGTTCTAACTTCAAGT+GGG - chr2_3:2621063-2621082 None:intergenic 30.0%
!!! CTGTTTCAGTCATTTTTATG+CGG + chr2_3:2621145-2621164 Msa0271320:CDS 30.0%
!! TCATTTTTATGCGGTTTGTT+TGG + chr2_3:2621154-2621173 Msa0271320:CDS 30.0%
!! CATTTTTATGCGGTTTGTTT+GGG + chr2_3:2621155-2621174 Msa0271320:CDS 30.0%
CTTCATGCAAACGATATTTA+AGG - chr2_3:2621219-2621238 None:intergenic 30.0%
GCACTAGAAATACAAATCAA+TGG - chr2_3:2621364-2621383 None:intergenic 30.0%
TGAAAAGTGGACGTAAATAT+AGG - chr2_3:2621386-2621405 None:intergenic 30.0%
CTATGTCCACTTAAAATAGT+TGG - chr2_3:2621434-2621453 None:intergenic 30.0%
TCAAACTCGGTATAAAATGT+TGG + chr2_3:2621462-2621481 Msa0271320:intron 30.0%
CAAACTCGGTATAAAATGTT+GGG + chr2_3:2621463-2621482 Msa0271320:intron 30.0%
TAATACTTACCCTAAGGAAA+CGG - chr2_3:2621857-2621876 None:intergenic 30.0%
AAGATATTAGGTACACTAAC+AGG + chr2_3:2622327-2622346 Msa0271320:CDS 30.0%
!! ATGGTATTGACATTCGTTAA+AGG + chr2_3:2622363-2622382 Msa0271320:intron 30.0%
!!! CACAGCATTGATATCTTTTT+GGG + chr2_3:2622679-2622698 Msa0271320:CDS 30.0%
!!! GTTTTTTATTTTATGGTGGC+CGG + chr2_3:2623109-2623128 Msa0271320:intron 30.0%
CATGTAAATTGAATTGTGCA+GGG + chr2_3:2623249-2623268 Msa0271320:intron 30.0%
!!! AATTGGACCCTAATTTTTTG+AGG + chr2_3:2623496-2623515 Msa0271320:intron 30.0%
AAATTTCAGCATTATTGGAG+CGG + chr2_3:2623572-2623591 Msa0271320:intron 30.0%
!!! AATTCATGTGGGTTTTTTGA+TGG - chr2_3:2623672-2623691 None:intergenic 30.0%
!!! GTTGCTTTTATCTTCTTCTA+TGG - chr2_3:2623721-2623740 None:intergenic 30.0%
AACCACAACAACAATAATCA+AGG + chr2_3:2623738-2623757 Msa0271320:three_prime_UTR 30.0%
! TACCTTGATTATTGTTGTTG+TGG - chr2_3:2623743-2623762 None:intergenic 30.0%
TAATACTTTACAGGTGGTTA+AGG + chr2_3:2623761-2623780 Msa0271320:three_prime_UTR 30.0%
GTAGAAAGTCAAAAAAAACG+AGG + chr2_3:2623831-2623850 Msa0271320:three_prime_UTR 30.0%
AAAGTCAAAAAAAACGAGGA+GGG + chr2_3:2623835-2623854 Msa0271320:three_prime_UTR 30.0%
TGCATGTAATGCCTAAAATA+TGG + chr2_3:2623869-2623888 Msa0271320:three_prime_UTR 30.0%
TATATCAAACTCCTACATGT+TGG + chr2_3:2623907-2623926 Msa0271320:three_prime_UTR 30.0%
TATATGCAAAGTACATCTTC+AGG + chr2_3:2624217-2624236 Msa0271320:three_prime_UTR 30.0%
! TTTGAAGCCAACGTTGTTAA+TGG + chr2_3:2620625-2620644 Msa0271320:CDS 35.0%
ACCATAACCATTAACAACGT+TGG - chr2_3:2620635-2620654 None:intergenic 35.0%
TACAAGTTAGCTGTAAACGA+TGG + chr2_3:2620686-2620705 Msa0271320:CDS 35.0%
TAAACGATGGCATGAGTTTA+AGG + chr2_3:2620699-2620718 Msa0271320:CDS 35.0%
AGTTGCAAATACAAAACGGT+AGG - chr2_3:2620735-2620754 None:intergenic 35.0%
CTTTCAAGAATGAAAGCAAC+TGG - chr2_3:2620770-2620789 None:intergenic 35.0%
! CAGTTGCTTTCATTCTTGAA+AGG + chr2_3:2620768-2620787 Msa0271320:CDS 35.0%
CATTCTGTTCTAACTTCAAG+TGG - chr2_3:2621064-2621083 None:intergenic 35.0%
! GCTTTTGTTAATTTTGCTGC+AGG + chr2_3:2621092-2621111 Msa0271320:intron 35.0%
TTTGCTGAAGTCTTGAAAAG+TGG - chr2_3:2621399-2621418 None:intergenic 35.0%
CATAGTCGATGTTTCAAACT+CGG + chr2_3:2621449-2621468 Msa0271320:intron 35.0%
TGTTGCTGAAGTTAAAGTCA+GGG - chr2_3:2621785-2621804 None:intergenic 35.0%
ATGTTGCTGAAGTTAAAGTC+AGG - chr2_3:2621786-2621805 None:intergenic 35.0%
TAAAGGTTACAGCTGGTATA+AGG - chr2_3:2621828-2621847 None:intergenic 35.0%
GACACTTAATACTTACCCTA+AGG - chr2_3:2621863-2621882 None:intergenic 35.0%
CTTTGTGATTCAAACTTTCG+TGG - chr2_3:2622223-2622242 None:intergenic 35.0%
TTAGGTACACTAACAGGAAT+TGG + chr2_3:2622333-2622352 Msa0271320:CDS 35.0%
TTGCATCATCAAAATGGTGT+TGG + chr2_3:2622423-2622442 Msa0271320:CDS 35.0%
!!! GCACAGCATTGATATCTTTT+TGG + chr2_3:2622678-2622697 Msa0271320:CDS 35.0%
GATTTGAGTCAGTGGAAATT+GGG + chr2_3:2622743-2622762 Msa0271320:CDS 35.0%
GTGATTTGATTGGATACATG+TGG - chr2_3:2622947-2622966 None:intergenic 35.0%
ACTTCATGGAGTGATTTGAT+TGG - chr2_3:2622957-2622976 None:intergenic 35.0%
GCATAATATATGCAAACGTC+CGG - chr2_3:2623145-2623164 None:intergenic 35.0%
CCTGCACAATTCAATTTACA+TGG - chr2_3:2623251-2623270 None:intergenic 35.0%
CCATGTAAATTGAATTGTGC+AGG + chr2_3:2623248-2623267 Msa0271320:intron 35.0%
CAATGGTAGCTGTAATTTCA+TGG + chr2_3:2623289-2623308 Msa0271320:intron 35.0%
GTAAAAACTGAGGCAAACAA+TGG - chr2_3:2623333-2623352 None:intergenic 35.0%
CATTAAAGGGGTAAAAACTG+AGG - chr2_3:2623343-2623362 None:intergenic 35.0%
!! TACCATGAGAAGCATTAAAG+GGG - chr2_3:2623355-2623374 None:intergenic 35.0%
!! CTACCATGAGAAGCATTAAA+GGG - chr2_3:2623356-2623375 None:intergenic 35.0%
GTGTAGTTTCTCATTCAACA+TGG - chr2_3:2623394-2623413 None:intergenic 35.0%
TTGAATGAGAAACTACACCT+TGG + chr2_3:2623396-2623415 Msa0271320:intron 35.0%
TAGGGTCCAATTAAACAACT+TGG - chr2_3:2623488-2623507 None:intergenic 35.0%
GATTGTATGTGGCTTATATG+CGG + chr2_3:2623599-2623618 Msa0271320:CDS 35.0%
ACCTCACAACTATTTCAACT+GGG - chr2_3:2623698-2623717 None:intergenic 35.0%
TCAAGGTAATACTTTACAGG+TGG + chr2_3:2623755-2623774 Msa0271320:three_prime_UTR 35.0%
GAAAGTCAAAAAAAACGAGG+AGG + chr2_3:2623834-2623853 Msa0271320:three_prime_UTR 35.0%
AAGTCAAAAAAAACGAGGAG+GGG + chr2_3:2623836-2623855 Msa0271320:three_prime_UTR 35.0%
! TTCATTTTGGACCAACATGT+AGG - chr2_3:2623921-2623940 None:intergenic 35.0%
GCCAACGTTGTTAATGGTTA+TGG + chr2_3:2620631-2620650 Msa0271320:CDS 40.0%
ATGGTGCAAATAGCATTTGC+TGG + chr2_3:2620650-2620669 Msa0271320:CDS 40.0%
! AATTTTGCTGCAGGAAGAAG+AGG + chr2_3:2621101-2621120 Msa0271320:intron 40.0%
! ATTTTGCTGCAGGAAGAAGA+GGG + chr2_3:2621102-2621121 Msa0271320:intron 40.0%
TTCAAGTACGAATGTAGCAG+TGG + chr2_3:2621281-2621300 Msa0271320:intron 40.0%
CACGCTTGCTTTATAGTACT+TGG - chr2_3:2621329-2621348 None:intergenic 40.0%
ACCAGCTGTAACCTTTATCA+TGG + chr2_3:2621831-2621850 Msa0271320:CDS 40.0%
TAAGGAAACGGCCATGATAA+AGG - chr2_3:2621845-2621864 None:intergenic 40.0%
TTTATCATGGCCGTTTCCTT+AGG + chr2_3:2621844-2621863 Msa0271320:CDS 40.0%
TTATCATGGCCGTTTCCTTA+GGG + chr2_3:2621845-2621864 Msa0271320:CDS 40.0%
TTTGAGAACAAAAGCAGGGA+AGG + chr2_3:2622302-2622321 Msa0271320:CDS 40.0%
GTACACTAACAGGAATTGGT+GGG + chr2_3:2622337-2622356 Msa0271320:intron 40.0%
TACACTAACAGGAATTGGTG+GGG + chr2_3:2622338-2622357 Msa0271320:intron 40.0%
CTCCACTGCTAATACCATTT+CGG + chr2_3:2622458-2622477 Msa0271320:CDS 40.0%
TCCACTGCTAATACCATTTC+GGG + chr2_3:2622459-2622478 Msa0271320:CDS 40.0%
TGCACTGTGGCTTATTATTC+AGG + chr2_3:2622515-2622534 Msa0271320:CDS 40.0%
CTGTGCTTGAGTAATGAGTA+GGG - chr2_3:2622664-2622683 None:intergenic 40.0%
AAAGCATAGAGCAAGCACAA+TGG - chr2_3:2622717-2622736 None:intergenic 40.0%
GGATTTGAGTCAGTGGAAAT+TGG + chr2_3:2622742-2622761 Msa0271320:CDS 40.0%
ACTACTAACCGTTGCTTATG+CGG + chr2_3:2622778-2622797 Msa0271320:CDS 40.0%
CTAACATACCGCATAAGCAA+CGG - chr2_3:2622789-2622808 None:intergenic 40.0%
TTGAATTGTGCAGGGTATAG+TGG + chr2_3:2623257-2623276 Msa0271320:intron 40.0%
TACCCCTTTAATGCTTCTCA+TGG + chr2_3:2623350-2623369 Msa0271320:intron 40.0%
!! GCTACCATGAGAAGCATTAA+AGG - chr2_3:2623357-2623376 None:intergenic 40.0%
AATGCTTCTCATGGTAGCAT+TGG + chr2_3:2623359-2623378 Msa0271320:intron 40.0%
ATGAGAAACTACACCTTGGA+AGG + chr2_3:2623400-2623419 Msa0271320:intron 40.0%
GGAAGCAAATATACCTTCCA+AGG - chr2_3:2623416-2623435 None:intergenic 40.0%
TGGCTTATATGCGGTTGTAT+GGG + chr2_3:2623608-2623627 Msa0271320:CDS 40.0%
CAACTGGGTCAAATTCATGT+GGG - chr2_3:2623683-2623702 None:intergenic 40.0%
TCAACTGGGTCAAATTCATG+TGG - chr2_3:2623684-2623703 None:intergenic 40.0%
ACCCAGTTGAAATAGTTGTG+AGG + chr2_3:2623694-2623713 Msa0271320:three_prime_UTR 40.0%
GACCTCACAACTATTTCAAC+TGG - chr2_3:2623699-2623718 None:intergenic 40.0%
! GAAGGATGTCACGTTCATTT+TGG - chr2_3:2623934-2623953 None:intergenic 40.0%
AACGTGACATCCTTCTAGAT+TGG + chr2_3:2623939-2623958 Msa0271320:three_prime_UTR 40.0%
!!! GCATTTTTGGCCAATCTAGA+AGG - chr2_3:2623952-2623971 None:intergenic 40.0%
TAATTGAGTGACCACTTAGC+TGG + chr2_3:2624078-2624097 Msa0271320:three_prime_UTR 40.0%
AGAAGAGGGCAAAGATGACT+TGG + chr2_3:2621116-2621135 Msa0271320:CDS 45.0%
! ATGCGGTTTGTTTGGGTAAG+TGG + chr2_3:2621162-2621181 Msa0271320:intron 45.0%
AGCAACATTTGCATCCGCAA+TGG + chr2_3:2621798-2621817 Msa0271320:CDS 45.0%
! TGGTATAAGGTTGGCCATTG+CGG - chr2_3:2621815-2621834 None:intergenic 45.0%
GGTTACAGCTGGTATAAGGT+TGG - chr2_3:2621824-2621843 None:intergenic 45.0%
GCCATGATAAAGGTTACAGC+TGG - chr2_3:2621835-2621854 None:intergenic 45.0%
GCAGGGAAGGCAAAGATATT+AGG + chr2_3:2622315-2622334 Msa0271320:CDS 45.0%
GGTACACTAACAGGAATTGG+TGG + chr2_3:2622336-2622355 Msa0271320:intron 45.0%
ACCCGAAATGGTATTAGCAG+TGG - chr2_3:2622463-2622482 None:intergenic 45.0%
ATAAGAGATGGCACTAGCCA+AGG - chr2_3:2622496-2622515 None:intergenic 45.0%
AAGCCACAGTGCATAAGAGA+TGG - chr2_3:2622508-2622527 None:intergenic 45.0%
GCTGTGCTTGAGTAATGAGT+AGG - chr2_3:2622665-2622684 None:intergenic 45.0%
! TGCTTGCTCTATGCTTTGAG+AGG + chr2_3:2622720-2622739 Msa0271320:CDS 45.0%
!! GCTTGCTCTATGCTTTGAGA+GGG + chr2_3:2622721-2622740 Msa0271320:CDS 45.0%
TTGAGAGGGATTTGAGTCAG+TGG + chr2_3:2622735-2622754 Msa0271320:CDS 45.0%
TGAGTCAGTGGAAATTGGGT+TGG + chr2_3:2622747-2622766 Msa0271320:CDS 45.0%
TGTGCAGGGTATAGTGGTTT+CGG + chr2_3:2623263-2623282 Msa0271320:intron 45.0%
TATAGTGGTTTCGGGAGCAA+TGG + chr2_3:2623272-2623291 Msa0271320:intron 45.0%
TCATGGTGTGTACACATGAG+AGG + chr2_3:2623306-2623325 Msa0271320:intron 45.0%
GTGGCTTATATGCGGTTGTA+TGG + chr2_3:2623607-2623626 Msa0271320:CDS 45.0%
GGCTTATATGCGGTTGTATG+GGG + chr2_3:2623609-2623628 Msa0271320:CDS 45.0%
TTGGCCAAAAATGCTACCAG+CGG + chr2_3:2623958-2623977 Msa0271320:three_prime_UTR 45.0%
! TAGTCCGCTGGTAGCATTTT+TGG - chr2_3:2623965-2623984 None:intergenic 45.0%
GGAGAATCAAAATAGTCCGC+TGG - chr2_3:2623977-2623996 None:intergenic 45.0%
!! AATTAATTAATCAATTAATT+AGG - chr2_3:2621038-2621057 None:intergenic 5.0%
!! ATGTTAAAATATAATAATAT+TGG + chr2_3:2621534-2621553 Msa0271320:intron 5.0%
!! TGTTAAAATATAATAATATT+GGG + chr2_3:2621535-2621554 Msa0271320:intron 5.0%
!!! TATAAGTTTTTTTTTTTTTT+GGG + chr2_3:2622842-2622861 Msa0271320:intron 5.0%
!! TAAAATAAAAAACAAAATAT+AGG - chr2_3:2623102-2623121 None:intergenic 5.0%
!!! ATATTTTGTTTTTTATTTTA+TGG + chr2_3:2623102-2623121 Msa0271320:intron 5.0%
AACAGGAATTGGTGGGGCAA+TGG + chr2_3:2622344-2622363 Msa0271320:intron 50.0%
GGCACATAGAGAACCCGAAA+TGG - chr2_3:2622475-2622494 None:intergenic 50.0%
! TTCGGGTTCTCTATGTGCCT+TGG + chr2_3:2622476-2622495 Msa0271320:CDS 50.0%
GTGCCATCTCTTATGCACTG+TGG + chr2_3:2622502-2622521 Msa0271320:CDS 50.0%
AACGTCCGGAGTTCAAACTC+CGG - chr2_3:2623131-2623150 None:intergenic 50.0%
GTGCAGGGTATAGTGGTTTC+GGG + chr2_3:2623264-2623283 Msa0271320:intron 50.0%
!! CTTCTCATGGTAGCATTGGC+TGG + chr2_3:2623363-2623382 Msa0271320:intron 50.0%
CAGAGTCAACTCCAGCTAAG+TGG - chr2_3:2624092-2624111 None:intergenic 50.0%
!! GGAGCGGCGTTGATTGTATG+TGG + chr2_3:2623588-2623607 Msa0271320:CDS 55.0%
GGTGGCCGGAGTTTGAACTC+CGG + chr2_3:2623123-2623142 Msa0271320:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 2620593 2624291 2620593 ID=Msa0271320;Name=Msa0271320
chr2_3 mRNA 2620593 2624291 2620593 ID=Msa0271320-mRNA-1;Parent=Msa0271320;Name=Msa0271320-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.5|0.42|1|0.83|0.71|7|651|271
chr2_3 exon 2620593 2620789 2620593 ID=Msa0271320-mRNA-1:exon:1327;Parent=Msa0271320-mRNA-1
chr2_3 exon 2621114 2621176 2621114 ID=Msa0271320-mRNA-1:exon:1328;Parent=Msa0271320-mRNA-1
chr2_3 exon 2621750 2621866 2621750 ID=Msa0271320-mRNA-1:exon:1329;Parent=Msa0271320-mRNA-1
chr2_3 exon 2622287 2622354 2622287 ID=Msa0271320-mRNA-1:exon:1330;Parent=Msa0271320-mRNA-1
chr2_3 exon 2622385 2622536 2622385 ID=Msa0271320-mRNA-1:exon:1331;Parent=Msa0271320-mRNA-1
chr2_3 exon 2622641 2622799 2622641 ID=Msa0271320-mRNA-1:exon:1332;Parent=Msa0271320-mRNA-1
chr2_3 exon 2623581 2624291 2623581 ID=Msa0271320-mRNA-1:exon:1333;Parent=Msa0271320-mRNA-1
chr2_3 CDS 2620593 2620789 2620593 ID=Msa0271320-mRNA-1:cds;Parent=Msa0271320-mRNA-1
chr2_3 CDS 2621114 2621176 2621114 ID=Msa0271320-mRNA-1:cds;Parent=Msa0271320-mRNA-1
chr2_3 CDS 2621750 2621866 2621750 ID=Msa0271320-mRNA-1:cds;Parent=Msa0271320-mRNA-1
chr2_3 CDS 2622287 2622354 2622287 ID=Msa0271320-mRNA-1:cds;Parent=Msa0271320-mRNA-1
chr2_3 CDS 2622385 2622536 2622385 ID=Msa0271320-mRNA-1:cds;Parent=Msa0271320-mRNA-1
chr2_3 CDS 2622641 2622799 2622641 ID=Msa0271320-mRNA-1:cds;Parent=Msa0271320-mRNA-1
chr2_3 CDS 2623581 2623640 2623581 ID=Msa0271320-mRNA-1:cds;Parent=Msa0271320-mRNA-1
chr2_3 three_prime_UTR 2623641 2624291 2623641 ID=Msa0271320-mRNA-1:three_prime_utr;Parent=Msa0271320-mRNA-1
Gene Sequence

>Msa0271320

ATGAAGAACAATTTGTGTAATGTAGTGCAAGGTTTGAAGCCAACGTTGTTAATGGTTATGGTGCAAATAGCATTTGCTGGTGTTAATGTTCTATACAAGTTAGCTGTAAACGATGGCATGAGTTTAAGGATTGTTGTTGCCTACCGTTTTGTATTTGCAACTGCTTTCATAGCTCCAGTTGCTTTCATTCTTGAAAGGAAGAAGAGGGCAAAGATGACTTGGACAATACTGTTTCAGTCATTTTTATGCGGTTTGTTTGGGGGATCATTAGCTCAAAACTTTTACTTACAAGCCCTGACTTTAACTTCAGCAACATTTGCATCCGCAATGGCCAACCTTATACCAGCTGTAACCTTTATCATGGCCGTTTCCTTAGGTATGGAAAAATTAAATTTGAGAACAAAAGCAGGGAAGGCAAAGATATTAGGTACACTAACAGGAATTGGTGTTGAAATTAAGATGGGTTCATTCCATTTAAATCTTTTGCATCATCAAAATGGTGTTGGATCACACACTATCTCCACTGCTAATACCATTTCGGGTTCTCTATGTGCCTTGGCTAGTGCCATCTCTTATGCACTGTGGCTTATTATTCAGGCAAAGATGAGTGAAAGATACCCTACTCATTACTCAAGCACAGCATTGATATCTTTTTGGGCGTCACTTGTTTCCATTGTGCTTGCTCTATGCTTTGAGAGGGATTTGAGTCAGTGGAAATTGGGTTGGAATATTAGACTACTAACCGTTGCTTATGCGCATTATTGGAGCGGCGTTGATTGTATGTGGCTTATATGCGGTTGTATGGGGAAAAAGTAA
Protein sequence

>Msa0271320

MKNNLCNVVQGLKPTLLMVMVQIAFAGVNVLYKLAVNDGMSLRIVVAYRFVFATAFIAPVAFILERKKRAKMTWTILFQSFLCGLFGGSLAQNFYLQALTLTSATFASAMANLIPAVTFIMAVSLGMEKLNLRTKAGKAKILGTLTGIGVEIKMGSFHLNLLHHQNGVGSHTISTANTISGSLCALASAISYALWLIIQAKMSERYPTHYSSTALISFWASLVSIVLALCFERDLSQWKLGWNIRLLTVAYAHYWSGVDCMWLICGCMGKK*