Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1414360 | sp|F4HVM3|WTR10_ARATH | 46.626 | 326 | 174 | 0 | 12 | 337 | 1 | 326 | 1.85e-94 | 290 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1414360 | G7IL80 | 95.960 | 396 | 11 | 1 | 1 | 396 | 3 | 393 | 0.0 | 776 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027020 | Msa1414360 | -0.803698 | 3.079396e-49 | -8.615850e-47 |
| Msa0035510 | Msa1414360 | -0.810289 | 1.241155e-50 | -8.615850e-47 |
| Msa0035590 | Msa1414360 | -0.804920 | 1.713818e-49 | -8.615850e-47 |
| Msa0042520 | Msa1414360 | -0.801919 | 7.174791e-49 | -8.615850e-47 |
| Msa0069150 | Msa1414360 | -0.827184 | 1.799683e-54 | -8.615850e-47 |
| Msa0087550 | Msa1414360 | 0.804695 | 1.909219e-49 | -8.615850e-47 |
| Msa0112880 | Msa1414360 | -0.803951 | 2.727451e-49 | -8.615850e-47 |
| Msa1350590 | Msa1414360 | -0.808523 | 2.970176e-50 | -8.615850e-47 |
| Msa1377980 | Msa1414360 | -0.801942 | 7.095408e-49 | -8.615850e-47 |
| Msa1395380 | Msa1414360 | -0.805354 | 1.390413e-49 | -8.615850e-47 |
| Msa1408230 | Msa1414360 | -0.804910 | 1.721679e-49 | -8.615850e-47 |
| Msa1408280 | Msa1414360 | -0.800772 | 1.231823e-48 | -8.615850e-47 |
| Msa1411930 | Msa1414360 | -0.810569 | 1.080209e-50 | -8.615850e-47 |
| Msa1414360 | Msa1414370 | 0.918449 | 1.537247e-86 | -8.615850e-47 |
| Msa1414360 | Msa1415510 | -0.816927 | 4.296962e-52 | -8.615850e-47 |
| Msa1414360 | Msa1424490 | -0.807000 | 6.259867e-50 | -8.615850e-47 |
| Msa1414360 | Msa1454300 | -0.809819 | 1.566888e-50 | -8.615850e-47 |
| Msa1414360 | Msa1461840 | -0.806119 | 9.602283e-50 | -8.615850e-47 |
| Msa0628440 | Msa1414360 | -0.802082 | 6.639839e-49 | -8.615850e-47 |
| Msa0644340 | Msa1414360 | 0.813048 | 3.116623e-51 | -8.615850e-47 |
| Msa0667670 | Msa1414360 | -0.800397 | 1.468903e-48 | -8.615850e-47 |
| Msa0693050 | Msa1414360 | -0.817628 | 2.988348e-52 | -8.615850e-47 |
| Msa0695250 | Msa1414360 | -0.816099 | 6.585234e-52 | -8.615850e-47 |
| Msa0708600 | Msa1414360 | 0.800910 | 1.154714e-48 | -8.615850e-47 |
| Msa0820130 | Msa1414360 | -0.806102 | 9.684144e-50 | -8.615850e-47 |
| Msa0127350 | Msa1414360 | -0.814203 | 1.736177e-51 | -8.615850e-47 |
| Msa0134270 | Msa1414360 | 0.801316 | 9.535258e-49 | -8.615850e-47 |
| Msa0167160 | Msa1414360 | -0.809757 | 1.615882e-50 | -8.615850e-47 |
| Msa0186400 | Msa1414360 | -0.804110 | 2.527681e-49 | -8.615850e-47 |
| Msa0195810 | Msa1414360 | -0.822975 | 1.776167e-53 | -8.615850e-47 |
| Msa0225280 | Msa1414360 | -0.807926 | 3.981055e-50 | -8.615850e-47 |
| Msa0231820 | Msa1414360 | 0.866734 | 2.296394e-65 | -8.615850e-47 |
| Msa0231830 | Msa1414360 | 0.947874 | 2.870141e-106 | -8.615850e-47 |
| Msa1228260 | Msa1414360 | -0.808774 | 2.624896e-50 | -8.615850e-47 |
| Msa1271220 | Msa1414360 | -0.809161 | 2.169796e-50 | -8.615850e-47 |
| Msa1277270 | Msa1414360 | -0.803682 | 3.101885e-49 | -8.615850e-47 |
| Msa1308430 | Msa1414360 | -0.807359 | 5.252835e-50 | -8.615850e-47 |
| Msa1315880 | Msa1414360 | -0.815985 | 6.981198e-52 | -8.615850e-47 |
| Msa0405200 | Msa1414360 | 0.804308 | 2.299169e-49 | -8.615850e-47 |
| Msa0415760 | Msa1414360 | -0.806899 | 6.574484e-50 | -8.615850e-47 |
| Msa0419150 | Msa1414360 | -0.808543 | 2.941600e-50 | -8.615850e-47 |
| Msa0429840 | Msa1414360 | 0.803207 | 3.891060e-49 | -8.615850e-47 |
| Msa0433890 | Msa1414360 | -0.800918 | 1.150493e-48 | -8.615850e-47 |
| Msa0434830 | Msa1414360 | -0.803656 | 3.140678e-49 | -8.615850e-47 |
| Msa0460170 | Msa1414360 | -0.806051 | 9.925289e-50 | -8.615850e-47 |
| Msa0460510 | Msa1414360 | -0.807353 | 5.267741e-50 | -8.615850e-47 |
| Msa0464980 | Msa1414360 | -0.805190 | 1.504160e-49 | -8.615850e-47 |
| Msa1041570 | Msa1414360 | -0.812394 | 4.334350e-51 | -8.615850e-47 |
| Msa1062070 | Msa1414360 | 0.802954 | 4.390016e-49 | -8.615850e-47 |
| Msa0271320 | Msa1414360 | 0.830609 | 2.667215e-55 | -8.615850e-47 |
| Msa0315720 | Msa1414360 | -0.811683 | 6.194378e-51 | -8.615850e-47 |
| Msa0358750 | Msa1414360 | -0.809328 | 1.998246e-50 | -8.615850e-47 |
| Msa1150750 | Msa1414360 | 0.809045 | 2.296966e-50 | -8.615850e-47 |
| Msa1166470 | Msa1414360 | -0.815566 | 8.659748e-52 | -8.615850e-47 |
| Msa1217260 | Msa1414360 | 0.806675 | 7.330565e-50 | -8.615850e-47 |
| Msa1221270 | Msa1414360 | 0.800840 | 1.193479e-48 | -8.615850e-47 |
| Msa0492330 | Msa1414360 | -0.800713 | 1.266452e-48 | -8.615850e-47 |
| Msa0497680 | Msa1414360 | 0.815353 | 9.657247e-52 | -8.615850e-47 |
| Msa0500910 | Msa1414360 | 0.803248 | 3.816771e-49 | -8.615850e-47 |
| Msa0505640 | Msa1414360 | 0.800593 | 1.340301e-48 | -8.615850e-47 |
| Msa0548420 | Msa1414360 | 0.818258 | 2.153584e-52 | -8.615850e-47 |
| Msa0557440 | Msa1414360 | -0.814109 | 1.821639e-51 | -8.615850e-47 |
| Msa0572730 | Msa1414360 | -0.808902 | 2.465132e-50 | -8.615850e-47 |
| Msa0580890 | Msa1414360 | -0.803766 | 2.981114e-49 | -8.615850e-47 |
| Msa0945160 | Msa1414360 | -0.813747 | 2.188693e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1414360 | MtrunA17_Chr2g0278561 | 95.960 | 396 | 11 | 1 | 1 | 396 | 3 | 393 | 0.0 | 776 |
| Msa1414360 | MtrunA17_Chr2g0278541 | 60.638 | 376 | 140 | 3 | 7 | 374 | 6 | 381 | 8.86e-162 | 460 |
| Msa1414360 | MtrunA17_Chr2g0278551 | 54.962 | 393 | 173 | 2 | 4 | 396 | 3 | 391 | 5.65e-152 | 436 |
| Msa1414360 | MtrunA17_Chr2g0278021 | 76.512 | 281 | 60 | 3 | 127 | 401 | 1 | 281 | 1.45e-149 | 425 |
| Msa1414360 | MtrunA17_Chr2g0290611 | 56.868 | 364 | 149 | 3 | 3 | 366 | 2 | 357 | 1.83e-145 | 418 |
| Msa1414360 | MtrunA17_Chr4g0050941 | 55.291 | 378 | 162 | 4 | 7 | 379 | 6 | 381 | 7.49e-133 | 386 |
| Msa1414360 | MtrunA17_Chr4g0050891 | 54.518 | 332 | 147 | 2 | 1 | 329 | 1 | 331 | 1.57e-130 | 380 |
| Msa1414360 | MtrunA17_Chr2g0332001 | 51.093 | 366 | 171 | 4 | 9 | 372 | 34 | 393 | 1.02e-129 | 379 |
| Msa1414360 | MtrunA17_Chr4g0051021 | 51.194 | 377 | 176 | 4 | 4 | 373 | 3 | 378 | 1.93e-128 | 375 |
| Msa1414360 | MtrunA17_Chr4g0050881 | 51.796 | 334 | 160 | 1 | 12 | 345 | 8 | 340 | 4.55e-119 | 350 |
| Msa1414360 | MtrunA17_Chr4g0050931 | 48.424 | 349 | 137 | 3 | 3 | 347 | 2 | 311 | 9.08e-114 | 335 |
| Msa1414360 | MtrunA17_Chr4g0051001 | 49.020 | 306 | 156 | 0 | 7 | 312 | 25 | 330 | 1.74e-100 | 302 |
| Msa1414360 | MtrunA17_Chr2g0284261 | 39.222 | 334 | 196 | 3 | 13 | 345 | 8 | 335 | 1.23e-82 | 257 |
| Msa1414360 | MtrunA17_Chr7g0255561 | 38.824 | 340 | 202 | 3 | 1 | 336 | 1 | 338 | 5.16e-80 | 251 |
| Msa1414360 | MtrunA17_Chr7g0255581 | 38.824 | 340 | 202 | 3 | 1 | 336 | 1 | 338 | 5.16e-80 | 251 |
| Msa1414360 | MtrunA17_Chr8g0354121 | 37.831 | 378 | 222 | 5 | 7 | 376 | 7 | 379 | 1.33e-79 | 251 |
| Msa1414360 | MtrunA17_Chr7g0271561 | 40.367 | 327 | 191 | 2 | 14 | 336 | 8 | 334 | 1.38e-79 | 250 |
| Msa1414360 | MtrunA17_Chr3g0081421 | 39.645 | 338 | 199 | 4 | 13 | 347 | 17 | 352 | 5.03e-78 | 246 |
| Msa1414360 | MtrunA17_Chr3g0081511 | 36.031 | 383 | 228 | 5 | 13 | 394 | 17 | 383 | 1.06e-76 | 243 |
| Msa1414360 | MtrunA17_Chr1g0164831 | 39.210 | 329 | 188 | 3 | 13 | 337 | 3 | 323 | 1.77e-76 | 241 |
| Msa1414360 | MtrunA17_Chr3g0114691 | 36.104 | 385 | 225 | 6 | 2 | 369 | 9 | 389 | 7.28e-72 | 231 |
| Msa1414360 | MtrunA17_Chr1g0160171 | 38.261 | 345 | 203 | 2 | 9 | 346 | 12 | 353 | 1.66e-71 | 229 |
| Msa1414360 | MtrunA17_Chr7g0263101 | 36.994 | 346 | 209 | 3 | 10 | 349 | 10 | 352 | 3.39e-70 | 226 |
| Msa1414360 | MtrunA17_Chr6g0463971 | 37.101 | 345 | 210 | 3 | 1 | 339 | 1 | 344 | 5.34e-69 | 222 |
| Msa1414360 | MtrunA17_Chr3g0114731 | 34.545 | 385 | 240 | 4 | 13 | 395 | 18 | 392 | 6.65e-69 | 223 |
| Msa1414360 | MtrunA17_Chr2g0278031 | 80.952 | 126 | 21 | 1 | 4 | 126 | 2 | 127 | 2.56e-68 | 212 |
| Msa1414360 | MtrunA17_Chr1g0160111 | 35.043 | 351 | 219 | 3 | 22 | 369 | 16 | 360 | 3.11e-68 | 221 |
| Msa1414360 | MtrunA17_Chr8g0334761 | 33.978 | 362 | 228 | 4 | 6 | 362 | 3 | 358 | 1.61e-67 | 218 |
| Msa1414360 | MtrunA17_Chr3g0129571 | 32.486 | 354 | 232 | 3 | 12 | 360 | 6 | 357 | 5.03e-66 | 214 |
| Msa1414360 | MtrunA17_Chr6g0483401 | 36.111 | 324 | 197 | 3 | 22 | 340 | 19 | 337 | 1.36e-65 | 213 |
| Msa1414360 | MtrunA17_Chr3g0129601 | 36.686 | 338 | 210 | 3 | 2 | 338 | 20 | 354 | 1.14e-64 | 211 |
| Msa1414360 | MtrunA17_Chr3g0129591 | 35.191 | 341 | 218 | 2 | 12 | 349 | 4 | 344 | 6.42e-64 | 209 |
| Msa1414360 | MtrunA17_Chr1g0186601 | 33.333 | 342 | 220 | 4 | 10 | 348 | 13 | 349 | 1.56e-63 | 207 |
| Msa1414360 | MtrunA17_Chr1g0182291 | 35.380 | 342 | 213 | 4 | 7 | 346 | 9 | 344 | 2.74e-63 | 207 |
| Msa1414360 | MtrunA17_Chr1g0155761 | 35.342 | 365 | 219 | 4 | 2 | 349 | 10 | 374 | 1.00e-62 | 207 |
| Msa1414360 | MtrunA17_Chr1g0186611 | 34.473 | 351 | 222 | 4 | 4 | 351 | 7 | 352 | 2.27e-62 | 205 |
| Msa1414360 | MtrunA17_Chr3g0142131 | 35.260 | 346 | 214 | 2 | 6 | 341 | 13 | 358 | 4.84e-62 | 205 |
| Msa1414360 | MtrunA17_Chr1g0186641 | 34.328 | 335 | 214 | 3 | 1 | 334 | 1 | 330 | 7.23e-62 | 203 |
| Msa1414360 | MtrunA17_Chr1g0186571 | 33.616 | 354 | 227 | 5 | 1 | 351 | 1 | 349 | 1.26e-61 | 203 |
| Msa1414360 | MtrunA17_Chr8g0383731 | 38.415 | 328 | 199 | 2 | 14 | 338 | 6 | 333 | 2.09e-61 | 202 |
| Msa1414360 | MtrunA17_Chr4g0073241 | 33.787 | 367 | 226 | 6 | 9 | 367 | 4 | 361 | 8.88e-60 | 198 |
| Msa1414360 | MtrunA17_Chr1g0186561 | 35.588 | 340 | 208 | 4 | 7 | 341 | 10 | 343 | 1.29e-59 | 197 |
| Msa1414360 | MtrunA17_Chr1g0171301 | 34.218 | 339 | 215 | 4 | 8 | 341 | 11 | 346 | 1.30e-59 | 197 |
| Msa1414360 | MtrunA17_Chr2g0310441 | 32.132 | 333 | 216 | 3 | 14 | 340 | 11 | 339 | 2.00e-59 | 197 |
| Msa1414360 | MtrunA17_Chr1g0160181 | 34.043 | 376 | 240 | 5 | 13 | 386 | 18 | 387 | 2.88e-59 | 197 |
| Msa1414360 | MtrunA17_Chr5g0428881 | 30.966 | 352 | 225 | 1 | 16 | 349 | 21 | 372 | 9.94e-59 | 196 |
| Msa1414360 | MtrunA17_Chr1g0184221 | 31.099 | 373 | 230 | 4 | 8 | 363 | 11 | 373 | 1.68e-58 | 195 |
| Msa1414360 | MtrunA17_Chr3g0129581 | 34.925 | 335 | 211 | 4 | 12 | 341 | 4 | 336 | 7.40e-57 | 191 |
| Msa1414360 | MtrunA17_Chr3g0114701 | 34.584 | 373 | 241 | 3 | 13 | 384 | 9 | 379 | 5.12e-55 | 186 |
| Msa1414360 | MtrunA17_Chr3g0126101 | 33.436 | 326 | 211 | 3 | 14 | 339 | 7 | 326 | 1.93e-54 | 184 |
| Msa1414360 | MtrunA17_Chr5g0441761 | 31.889 | 323 | 212 | 2 | 18 | 340 | 19 | 333 | 2.97e-54 | 183 |
| Msa1414360 | MtrunA17_Chr8g0334751 | 33.048 | 351 | 208 | 6 | 14 | 351 | 12 | 348 | 7.63e-54 | 182 |
| Msa1414360 | MtrunA17_Chr4g0059311 | 32.822 | 326 | 215 | 3 | 14 | 338 | 12 | 334 | 2.45e-53 | 181 |
| Msa1414360 | MtrunA17_Chr8g0334771 | 30.446 | 381 | 247 | 4 | 6 | 382 | 3 | 369 | 4.42e-53 | 181 |
| Msa1414360 | MtrunA17_Chr3g0114711 | 30.423 | 378 | 224 | 4 | 2 | 343 | 3 | 377 | 7.52e-52 | 178 |
| Msa1414360 | MtrunA17_Chr3g0084091 | 31.579 | 304 | 175 | 3 | 89 | 368 | 6 | 300 | 1.85e-49 | 169 |
| Msa1414360 | MtrunA17_Chr5g0413961 | 32.219 | 329 | 208 | 4 | 12 | 336 | 13 | 330 | 2.78e-49 | 170 |
| Msa1414360 | MtrunA17_Chr1g0150151 | 34.877 | 324 | 205 | 5 | 14 | 334 | 12 | 332 | 3.21e-49 | 171 |
| Msa1414360 | MtrunA17_Chr6g0451211 | 32.143 | 336 | 207 | 5 | 31 | 351 | 30 | 359 | 2.17e-48 | 168 |
| Msa1414360 | MtrunA17_Chr5g0429001 | 30.935 | 278 | 190 | 1 | 65 | 340 | 3 | 280 | 5.45e-47 | 164 |
| Msa1414360 | MtrunA17_Chr1g0211801 | 35.968 | 253 | 152 | 3 | 13 | 262 | 11 | 256 | 7.01e-47 | 162 |
| Msa1414360 | MtrunA17_Chr5g0413941 | 30.060 | 336 | 226 | 4 | 8 | 340 | 2 | 331 | 2.13e-45 | 160 |
| Msa1414360 | MtrunA17_Chr5g0413921 | 32.012 | 328 | 218 | 4 | 8 | 334 | 2 | 325 | 2.26e-45 | 160 |
| Msa1414360 | MtrunA17_Chr5g0407991 | 32.033 | 359 | 216 | 7 | 18 | 351 | 14 | 369 | 1.89e-44 | 158 |
| Msa1414360 | MtrunA17_Chr5g0407971 | 30.725 | 345 | 222 | 4 | 13 | 343 | 11 | 352 | 2.21e-44 | 158 |
| Msa1414360 | MtrunA17_Chr5g0413951 | 31.045 | 335 | 206 | 6 | 11 | 334 | 5 | 325 | 1.72e-43 | 155 |
| Msa1414360 | MtrunA17_Chr7g0227921 | 29.363 | 361 | 236 | 6 | 10 | 364 | 8 | 355 | 1.97e-42 | 152 |
| Msa1414360 | MtrunA17_Chr5g0408031 | 29.973 | 377 | 239 | 7 | 10 | 370 | 7 | 374 | 3.86e-40 | 147 |
| Msa1414360 | MtrunA17_Chr8g0369841 | 28.024 | 339 | 229 | 3 | 18 | 343 | 14 | 350 | 5.14e-40 | 146 |
| Msa1414360 | MtrunA17_Chr6g0451201 | 33.657 | 309 | 197 | 5 | 31 | 339 | 30 | 330 | 6.26e-40 | 146 |
| Msa1414360 | MtrunA17_Chr6g0451251 | 32.907 | 313 | 197 | 7 | 31 | 339 | 30 | 333 | 1.78e-39 | 145 |
| Msa1414360 | MtrunA17_Chr6g0451171 | 31.884 | 345 | 218 | 9 | 30 | 368 | 29 | 362 | 1.99e-39 | 144 |
| Msa1414360 | MtrunA17_Chr5g0413931 | 30.357 | 336 | 225 | 5 | 15 | 346 | 8 | 338 | 9.37e-39 | 142 |
| Msa1414360 | MtrunA17_Chr5g0408001 | 30.973 | 339 | 215 | 5 | 13 | 336 | 10 | 344 | 1.34e-38 | 143 |
| Msa1414360 | MtrunA17_Chr5g0408041 | 28.457 | 376 | 242 | 7 | 12 | 371 | 10 | 374 | 2.52e-38 | 142 |
| Msa1414360 | MtrunA17_Chr6g0451261 | 29.114 | 316 | 217 | 4 | 1 | 315 | 1 | 310 | 4.39e-38 | 146 |
| Msa1414360 | MtrunA17_Chr4g0050921 | 58.654 | 104 | 43 | 0 | 212 | 315 | 1 | 104 | 1.54e-37 | 132 |
| Msa1414360 | MtrunA17_Chr3g0126091 | 25.382 | 327 | 230 | 4 | 14 | 333 | 12 | 331 | 1.96e-32 | 125 |
| Msa1414360 | MtrunA17_Chr4g0050911 | 50.382 | 131 | 59 | 2 | 88 | 212 | 6 | 136 | 6.66e-32 | 119 |
| Msa1414360 | MtrunA17_Chr1g0177221 | 31.076 | 251 | 168 | 3 | 13 | 262 | 18 | 264 | 4.62e-31 | 119 |
| Msa1414360 | MtrunA17_Chr5g0404811 | 31.602 | 231 | 151 | 3 | 121 | 348 | 1 | 227 | 8.18e-31 | 118 |
| Msa1414360 | MtrunA17_Chr8g0334711 | 35.211 | 213 | 111 | 5 | 9 | 209 | 6 | 203 | 9.01e-31 | 117 |
| Msa1414360 | MtrunA17_Chr6g0451191 | 33.488 | 215 | 133 | 5 | 127 | 339 | 1 | 207 | 1.33e-30 | 117 |
| Msa1414360 | MtrunA17_Chr5g0399281 | 27.536 | 345 | 224 | 8 | 18 | 351 | 13 | 342 | 1.49e-26 | 109 |
| Msa1414360 | MtrunA17_Chr8g0334721 | 37.008 | 127 | 79 | 1 | 230 | 355 | 5 | 131 | 2.53e-23 | 95.9 |
| Msa1414360 | MtrunA17_Chr4g0056081 | 25.697 | 323 | 230 | 5 | 18 | 334 | 19 | 337 | 2.69e-23 | 100 |
| Msa1414360 | MtrunA17_Chr5g0404801 | 41.667 | 108 | 63 | 0 | 18 | 125 | 12 | 119 | 9.77e-20 | 84.7 |
| Msa1414360 | MtrunA17_Chr8g0334731 | 31.220 | 205 | 103 | 6 | 14 | 209 | 12 | 187 | 5.31e-18 | 82.0 |
| Msa1414360 | MtrunA17_Chr1g0177231 | 48.649 | 74 | 38 | 0 | 263 | 336 | 29 | 102 | 2.33e-17 | 78.2 |
| Msa1414360 | MtrunA17_Chr1g0211811 | 44.000 | 75 | 42 | 0 | 264 | 338 | 1 | 75 | 3.39e-17 | 76.3 |
| Msa1414360 | MtrunA17_Chr4g0050901 | 55.000 | 60 | 27 | 0 | 7 | 66 | 6 | 65 | 4.76e-17 | 75.1 |
| Msa1414360 | MtrunA17_Chr1g0172891 | 51.562 | 64 | 31 | 0 | 273 | 336 | 17 | 80 | 1.77e-16 | 75.1 |
| Msa1414360 | MtrunA17_Chr1g0182261 | 34.375 | 128 | 81 | 3 | 214 | 338 | 87 | 214 | 3.91e-15 | 74.3 |
| Msa1414360 | MtrunA17_Chr6g0451241 | 36.082 | 97 | 61 | 1 | 273 | 368 | 18 | 114 | 6.37e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1414360 | AT1G68170.2 | 45.672 | 335 | 182 | 0 | 3 | 337 | 2 | 336 | 1.71e-96 | 293 |
| Msa1414360 | AT1G68170.1 | 46.626 | 326 | 174 | 0 | 12 | 337 | 1 | 326 | 1.89e-95 | 290 |
| Msa1414360 | AT1G25270.1 | 43.391 | 348 | 184 | 4 | 12 | 351 | 1 | 343 | 3.59e-93 | 285 |
| Msa1414360 | AT5G07050.1 | 40.785 | 331 | 183 | 4 | 13 | 334 | 17 | 343 | 1.98e-77 | 246 |
| Msa1414360 | AT1G09380.1 | 40.625 | 320 | 187 | 2 | 14 | 331 | 8 | 326 | 4.97e-76 | 241 |
| Msa1414360 | AT4G01440.1 | 36.620 | 355 | 217 | 3 | 14 | 367 | 10 | 357 | 3.83e-74 | 236 |
| Msa1414360 | AT5G13670.1 | 37.705 | 366 | 208 | 6 | 13 | 372 | 7 | 358 | 3.21e-73 | 234 |
| Msa1414360 | AT3G30340.1 | 36.765 | 340 | 208 | 3 | 13 | 351 | 10 | 343 | 1.74e-71 | 229 |
| Msa1414360 | AT2G37460.1 | 32.924 | 407 | 235 | 6 | 7 | 409 | 8 | 380 | 6.31e-71 | 228 |
| Msa1414360 | AT4G08290.1 | 36.639 | 363 | 224 | 3 | 12 | 371 | 11 | 370 | 2.49e-70 | 227 |
| Msa1414360 | AT4G08300.1 | 37.963 | 324 | 199 | 2 | 12 | 334 | 9 | 331 | 3.30e-70 | 226 |
| Msa1414360 | AT2G39510.1 | 36.364 | 363 | 216 | 4 | 13 | 369 | 7 | 360 | 3.50e-69 | 223 |
| Msa1414360 | AT3G18200.2 | 34.973 | 366 | 225 | 5 | 8 | 372 | 29 | 382 | 5.42e-68 | 221 |
| Msa1414360 | AT4G01440.3 | 37.954 | 303 | 183 | 2 | 14 | 315 | 10 | 308 | 4.12e-66 | 214 |
| Msa1414360 | AT1G21890.1 | 33.506 | 385 | 235 | 4 | 7 | 372 | 4 | 386 | 1.75e-65 | 214 |
| Msa1414360 | AT1G44800.1 | 33.777 | 376 | 230 | 3 | 9 | 382 | 6 | 364 | 2.58e-65 | 213 |
| Msa1414360 | AT2G40900.1 | 33.149 | 362 | 229 | 2 | 10 | 366 | 7 | 360 | 2.66e-65 | 214 |
| Msa1414360 | AT5G64700.1 | 36.747 | 332 | 206 | 1 | 13 | 340 | 7 | 338 | 9.99e-65 | 211 |
| Msa1414360 | AT1G11450.3 | 36.628 | 344 | 213 | 3 | 7 | 349 | 9 | 348 | 2.42e-64 | 210 |
| Msa1414360 | AT3G53210.1 | 34.444 | 360 | 227 | 3 | 18 | 377 | 14 | 364 | 4.78e-64 | 210 |
| Msa1414360 | AT4G01430.1 | 33.962 | 371 | 225 | 4 | 14 | 382 | 9 | 361 | 1.22e-63 | 209 |
| Msa1414360 | AT1G01070.1 | 33.978 | 362 | 217 | 4 | 8 | 353 | 10 | 365 | 1.66e-63 | 208 |
| Msa1414360 | AT1G11460.1 | 37.037 | 324 | 200 | 3 | 14 | 336 | 16 | 336 | 3.91e-63 | 206 |
| Msa1414360 | AT1G75500.1 | 36.950 | 341 | 207 | 4 | 2 | 336 | 8 | 346 | 6.71e-63 | 207 |
| Msa1414360 | AT1G75500.2 | 36.950 | 341 | 207 | 4 | 2 | 336 | 8 | 346 | 6.71e-63 | 207 |
| Msa1414360 | AT3G56620.1 | 36.760 | 321 | 192 | 4 | 13 | 331 | 10 | 321 | 2.56e-61 | 203 |
| Msa1414360 | AT1G43650.1 | 36.000 | 325 | 196 | 3 | 13 | 334 | 6 | 321 | 5.79e-60 | 198 |
| Msa1414360 | AT4G30420.2 | 30.576 | 399 | 251 | 8 | 9 | 402 | 4 | 381 | 1.92e-59 | 198 |
| Msa1414360 | AT1G11450.5 | 36.808 | 307 | 189 | 3 | 44 | 349 | 2 | 304 | 1.80e-57 | 191 |
| Msa1414360 | AT4G30420.1 | 30.769 | 390 | 244 | 8 | 18 | 402 | 3 | 371 | 1.95e-57 | 193 |
| Msa1414360 | AT1G11450.2 | 37.075 | 294 | 180 | 3 | 57 | 349 | 8 | 297 | 6.65e-55 | 184 |
| Msa1414360 | AT4G28040.1 | 31.856 | 361 | 228 | 5 | 13 | 370 | 7 | 352 | 4.67e-54 | 184 |
| Msa1414360 | AT4G28040.5 | 31.856 | 361 | 228 | 5 | 13 | 370 | 7 | 352 | 4.67e-54 | 184 |
| Msa1414360 | AT4G28040.3 | 31.856 | 361 | 228 | 5 | 13 | 370 | 7 | 352 | 4.67e-54 | 184 |
| Msa1414360 | AT4G28040.4 | 31.856 | 361 | 228 | 5 | 13 | 370 | 7 | 352 | 4.67e-54 | 184 |
| Msa1414360 | AT4G28040.2 | 31.856 | 361 | 228 | 5 | 13 | 370 | 7 | 352 | 4.67e-54 | 184 |
| Msa1414360 | AT1G11450.4 | 36.482 | 307 | 190 | 3 | 7 | 312 | 9 | 311 | 4.81e-54 | 182 |
| Msa1414360 | AT1G21890.2 | 34.295 | 312 | 199 | 1 | 7 | 312 | 4 | 315 | 8.75e-53 | 180 |
| Msa1414360 | AT4G01430.2 | 36.545 | 301 | 188 | 3 | 14 | 312 | 9 | 308 | 1.54e-52 | 178 |
| Msa1414360 | AT4G01440.4 | 38.039 | 255 | 153 | 2 | 14 | 267 | 10 | 260 | 6.25e-52 | 175 |
| Msa1414360 | AT1G01070.2 | 33.876 | 307 | 181 | 4 | 63 | 353 | 18 | 318 | 3.03e-50 | 172 |
| Msa1414360 | AT5G40240.1 | 32.647 | 340 | 217 | 6 | 14 | 347 | 20 | 353 | 3.04e-50 | 174 |
| Msa1414360 | AT5G40240.3 | 32.647 | 340 | 217 | 6 | 14 | 347 | 20 | 353 | 3.04e-50 | 174 |
| Msa1414360 | AT5G40240.2 | 32.647 | 340 | 217 | 6 | 14 | 347 | 34 | 367 | 3.27e-50 | 174 |
| Msa1414360 | AT4G01450.2 | 35.093 | 322 | 202 | 2 | 14 | 335 | 10 | 324 | 6.48e-50 | 172 |
| Msa1414360 | AT2G37450.2 | 33.951 | 324 | 187 | 4 | 14 | 336 | 9 | 306 | 5.21e-49 | 169 |
| Msa1414360 | AT5G40230.1 | 32.000 | 350 | 217 | 5 | 14 | 349 | 21 | 363 | 2.85e-48 | 169 |
| Msa1414360 | AT4G01450.1 | 34.114 | 299 | 190 | 2 | 14 | 312 | 10 | 301 | 4.07e-48 | 167 |
| Msa1414360 | AT4G01440.5 | 34.766 | 256 | 159 | 3 | 113 | 367 | 1 | 249 | 1.23e-47 | 164 |
| Msa1414360 | AT4G01440.2 | 34.766 | 256 | 159 | 3 | 113 | 367 | 1 | 249 | 1.23e-47 | 164 |
| Msa1414360 | AT3G53210.2 | 33.564 | 289 | 183 | 3 | 89 | 377 | 28 | 307 | 9.05e-47 | 163 |
| Msa1414360 | AT3G28050.1 | 28.718 | 390 | 238 | 8 | 14 | 397 | 12 | 367 | 1.94e-46 | 164 |
| Msa1414360 | AT3G18200.1 | 35.227 | 264 | 158 | 5 | 110 | 372 | 1 | 252 | 5.75e-46 | 159 |
| Msa1414360 | AT3G30340.2 | 35.857 | 251 | 157 | 2 | 13 | 262 | 10 | 257 | 1.36e-45 | 159 |
| Msa1414360 | AT4G08290.2 | 36.400 | 250 | 158 | 1 | 12 | 261 | 11 | 259 | 4.62e-45 | 157 |
| Msa1414360 | AT1G11450.1 | 36.680 | 259 | 159 | 3 | 92 | 349 | 2 | 256 | 1.32e-44 | 155 |
| Msa1414360 | AT3G53210.3 | 35.622 | 233 | 148 | 1 | 18 | 250 | 14 | 244 | 6.96e-44 | 154 |
| Msa1414360 | AT5G45370.1 | 29.586 | 338 | 222 | 3 | 18 | 352 | 24 | 348 | 7.59e-44 | 156 |
| Msa1414360 | AT4G15540.1 | 29.942 | 344 | 219 | 4 | 14 | 349 | 17 | 346 | 3.00e-43 | 155 |
| Msa1414360 | AT4G15540.2 | 29.942 | 344 | 219 | 4 | 14 | 349 | 17 | 346 | 3.00e-43 | 155 |
| Msa1414360 | AT5G45370.2 | 28.286 | 350 | 235 | 4 | 18 | 352 | 24 | 372 | 8.84e-42 | 152 |
| Msa1414360 | AT5G45370.4 | 28.286 | 350 | 235 | 4 | 18 | 352 | 24 | 372 | 8.84e-42 | 152 |
| Msa1414360 | AT5G64700.2 | 34.387 | 253 | 162 | 1 | 13 | 261 | 7 | 259 | 2.62e-41 | 147 |
| Msa1414360 | AT4G01450.4 | 34.538 | 249 | 156 | 2 | 14 | 262 | 10 | 251 | 3.21e-41 | 147 |
| Msa1414360 | AT5G40210.1 | 33.022 | 321 | 192 | 8 | 18 | 336 | 17 | 316 | 2.73e-40 | 147 |
| Msa1414360 | AT3G28100.1 | 29.305 | 331 | 229 | 5 | 18 | 346 | 18 | 345 | 1.34e-37 | 140 |
| Msa1414360 | AT4G01450.3 | 35.321 | 218 | 134 | 2 | 14 | 231 | 10 | 220 | 2.27e-37 | 136 |
| Msa1414360 | AT3G28070.1 | 30.395 | 329 | 216 | 8 | 18 | 341 | 21 | 341 | 4.02e-37 | 139 |
| Msa1414360 | AT1G70260.1 | 26.727 | 333 | 239 | 2 | 12 | 339 | 10 | 342 | 6.37e-37 | 138 |
| Msa1414360 | AT3G45870.1 | 28.834 | 326 | 211 | 6 | 18 | 329 | 16 | 334 | 2.67e-36 | 137 |
| Msa1414360 | AT2G37450.3 | 36.017 | 236 | 145 | 3 | 102 | 336 | 4 | 234 | 3.03e-36 | 134 |
| Msa1414360 | AT1G43650.2 | 34.524 | 252 | 153 | 3 | 13 | 261 | 6 | 248 | 3.07e-36 | 134 |
| Msa1414360 | AT3G28070.2 | 33.607 | 244 | 151 | 6 | 102 | 341 | 13 | 249 | 7.94e-35 | 130 |
| Msa1414360 | AT4G19185.1 | 29.341 | 334 | 217 | 6 | 18 | 336 | 25 | 354 | 2.14e-34 | 132 |
| Msa1414360 | AT3G28080.5 | 31.933 | 238 | 159 | 3 | 102 | 338 | 13 | 248 | 2.93e-34 | 129 |
| Msa1414360 | AT3G28080.7 | 31.933 | 238 | 159 | 3 | 102 | 338 | 13 | 248 | 2.93e-34 | 129 |
| Msa1414360 | AT3G28080.8 | 31.933 | 238 | 159 | 3 | 102 | 338 | 13 | 248 | 2.93e-34 | 129 |
| Msa1414360 | AT3G28080.6 | 31.933 | 238 | 159 | 3 | 102 | 338 | 13 | 248 | 2.93e-34 | 129 |
| Msa1414360 | AT3G28080.1 | 29.102 | 323 | 224 | 5 | 18 | 338 | 18 | 337 | 1.69e-33 | 129 |
| Msa1414360 | AT3G28080.2 | 31.933 | 238 | 159 | 3 | 102 | 338 | 94 | 329 | 4.35e-33 | 127 |
| Msa1414360 | AT4G01430.3 | 32.099 | 243 | 146 | 3 | 142 | 383 | 1 | 225 | 5.02e-32 | 121 |
| Msa1414360 | AT4G24980.1 | 28.205 | 312 | 145 | 6 | 28 | 334 | 1 | 238 | 1.59e-30 | 119 |
| Msa1414360 | AT1G60050.1 | 25.788 | 349 | 249 | 5 | 14 | 354 | 13 | 359 | 2.84e-29 | 117 |
| Msa1414360 | AT5G47470.2 | 28.571 | 322 | 214 | 6 | 18 | 334 | 62 | 372 | 3.09e-29 | 117 |
| Msa1414360 | AT5G47470.3 | 28.571 | 322 | 214 | 6 | 18 | 334 | 62 | 372 | 3.26e-29 | 117 |
| Msa1414360 | AT5G47470.1 | 28.571 | 322 | 214 | 6 | 18 | 334 | 34 | 344 | 6.45e-29 | 116 |
| Msa1414360 | AT3G45870.8 | 27.508 | 309 | 203 | 6 | 18 | 312 | 16 | 317 | 7.72e-29 | 115 |
| Msa1414360 | AT3G28130.5 | 28.340 | 247 | 174 | 3 | 102 | 347 | 15 | 259 | 2.60e-28 | 112 |
| Msa1414360 | AT3G28130.1 | 28.340 | 247 | 174 | 3 | 102 | 347 | 15 | 259 | 2.60e-28 | 112 |
| Msa1414360 | AT3G28130.2 | 28.340 | 247 | 174 | 3 | 102 | 347 | 101 | 345 | 2.11e-27 | 112 |
| Msa1414360 | AT5G45370.6 | 26.766 | 269 | 181 | 4 | 99 | 352 | 3 | 270 | 4.25e-27 | 109 |
| Msa1414360 | AT5G45370.5 | 26.766 | 269 | 181 | 4 | 99 | 352 | 3 | 270 | 4.25e-27 | 109 |
| Msa1414360 | AT4G19185.2 | 28.358 | 268 | 170 | 5 | 84 | 336 | 16 | 276 | 9.23e-27 | 109 |
| Msa1414360 | AT3G28070.5 | 31.963 | 219 | 138 | 6 | 127 | 341 | 1 | 212 | 1.02e-26 | 107 |
| Msa1414360 | AT2G37450.1 | 33.971 | 209 | 132 | 3 | 127 | 334 | 62 | 265 | 1.22e-26 | 108 |
| Msa1414360 | AT3G28070.3 | 28.333 | 300 | 204 | 7 | 18 | 312 | 21 | 314 | 8.24e-26 | 107 |
| Msa1414360 | AT3G28080.9 | 30.047 | 213 | 146 | 3 | 127 | 338 | 1 | 211 | 8.70e-26 | 104 |
| Msa1414360 | AT3G45870.9 | 28.571 | 252 | 160 | 5 | 13 | 250 | 11 | 256 | 8.51e-23 | 97.8 |
| Msa1414360 | AT4G16620.1 | 25.439 | 342 | 234 | 7 | 22 | 351 | 20 | 352 | 1.87e-22 | 98.2 |
| Msa1414360 | AT3G28130.3 | 26.577 | 222 | 160 | 3 | 127 | 347 | 1 | 220 | 8.86e-21 | 90.9 |
| Msa1414360 | AT3G45870.5 | 27.311 | 238 | 155 | 5 | 103 | 329 | 29 | 259 | 1.75e-19 | 89.0 |
| Msa1414360 | AT5G45370.3 | 25.000 | 240 | 164 | 4 | 128 | 352 | 74 | 312 | 2.75e-19 | 88.6 |
| Msa1414360 | AT3G28080.3 | 25.466 | 322 | 183 | 6 | 18 | 338 | 18 | 283 | 1.48e-18 | 86.3 |
| Msa1414360 | AT3G28100.3 | 25.820 | 244 | 177 | 4 | 18 | 259 | 18 | 259 | 2.01e-16 | 79.3 |
| Msa1414360 | AT4G16620.4 | 26.054 | 261 | 173 | 6 | 102 | 351 | 4 | 255 | 3.30e-16 | 78.6 |
| Msa1414360 | AT4G16620.2 | 26.054 | 261 | 173 | 6 | 102 | 351 | 4 | 255 | 3.30e-16 | 78.6 |
| Msa1414360 | AT3G45870.2 | 28.058 | 139 | 99 | 1 | 191 | 329 | 46 | 183 | 7.86e-14 | 71.2 |
| Msa1414360 | AT4G16620.3 | 24.312 | 218 | 157 | 3 | 22 | 237 | 20 | 231 | 6.32e-13 | 68.9 |
| Msa1414360 | AT3G45870.6 | 25.339 | 221 | 147 | 5 | 103 | 312 | 29 | 242 | 1.08e-12 | 68.2 |
| Msa1414360 | AT3G45870.7 | 25.339 | 221 | 147 | 5 | 103 | 312 | 29 | 242 | 1.08e-12 | 68.2 |
| Msa1414360 | AT3G28100.2 | 28.667 | 150 | 105 | 2 | 18 | 166 | 18 | 166 | 1.33e-12 | 67.8 |
| Msa1414360 | AT3G28080.4 | 36.486 | 74 | 47 | 0 | 265 | 338 | 121 | 194 | 2.42e-12 | 66.2 |
Find 102 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACTGTGGCTTATTATTC+AGG | 0.189563 | tig0024111:+52013 | Msa1414360:CDS |
| GAAGAACAAAATGAAGAAAA+AGG | 0.197855 | tig0024111:+53462 | Msa1414360:three_prime_UTR |
| GATGATGCAAAAGATTTAAA+TGG | 0.200514 | tig0024111:-51908 | Msa1414360:intergenic |
| GAAGGATGTCACGTTCATTT+TGG | 0.209146 | tig0024111:-53363 | Msa1414360:intergenic |
| TAAACGATGGCATGAGTTTA+AGG | 0.216977 | tig0024111:+50094 | Msa1414360:CDS |
| TCCACTGCTAATACCATTTC+GGG | 0.219336 | tig0024111:+51957 | Msa1414360:CDS |
| GGATTTGAGTCAGTGGAAAT+TGG | 0.225887 | tig0024111:+52234 | Msa1414360:CDS |
| TTTGAAGCCAACGTTGTTAA+TGG | 0.249888 | tig0024111:+50020 | Msa1414360:CDS |
| CTCCACTGCTAATACCATTT+CGG | 0.255958 | tig0024111:+51956 | Msa1414360:CDS |
| GTGCAGGGTATAGTGGTTTC+AGG | 0.274984 | tig0024111:+52702 | Msa1414360:intron |
| GCTTAGATTTATATCTTTCA+TGG | 0.281116 | tig0024111:+53574 | Msa1414360:three_prime_UTR |
| GCCACCATGAGAAGCATTAA+AGG | 0.303653 | tig0024111:-52792 | Msa1414360:intergenic |
| TGCATGTAATGCCTAAAATA+TGG | 0.309367 | tig0024111:+53301 | Msa1414360:exon |
| AATGCTTCTCATGGTGGCTT+TGG | 0.326565 | tig0024111:+52797 | Msa1414360:CDS |
| CTTCTCATGGTGGCTTTGGC+TGG | 0.336230 | tig0024111:+52801 | Msa1414360:CDS |
| TTTATCATGGCCGTTTCCTT+AGG | 0.340185 | tig0024111:+51207 | Msa1414360:CDS |
| GCAGGGAAGGCAAAGATATT+AGG | 0.341417 | tig0024111:+51813 | Msa1414360:CDS |
| GTGTAGTTTCTCATTCAAAA+TGG | 0.353109 | tig0024111:-52829 | Msa1414360:intergenic |
| GACCTCACAACTATTTCAAC+TGG | 0.356060 | tig0024111:-53128 | Msa1414360:intergenic |
| ATGTACTTTGCATATATTGT+AGG | 0.362990 | tig0024111:-53644 | Msa1414360:intergenic |
| ATGGTATTGACATTCGTTAA+AGG | 0.372757 | tig0024111:+51861 | Msa1414360:CDS |
| TAAGGAAACGGCCATGATAA+AGG | 0.377584 | tig0024111:-51205 | Msa1414360:intergenic |
| GATTTGAGTCAGTGGAAATT+GGG | 0.381331 | tig0024111:+52235 | Msa1414360:CDS |
| TAATCAAGGTAATACTTTAC+AGG | 0.391706 | tig0024111:+53184 | Msa1414360:CDS |
| GCCAACGTTGTTAATGGTTA+TGG | 0.393643 | tig0024111:+50026 | Msa1414360:CDS |
| GTGGCTTATATGCGGTTGTA+TGG | 0.403530 | tig0024111:+53039 | Msa1414360:CDS |
| AAGATATTAGGTACACTAAC+AGG | 0.409574 | tig0024111:+51825 | Msa1414360:CDS |
| TAAAGGTTACAGCTGGTATA+AGG | 0.410418 | tig0024111:-51188 | Msa1414360:intergenic |
| TAAAGGTGTTGAAATTAAGA+TGG | 0.412574 | tig0024111:+51878 | Msa1414360:CDS |
| TTGAATTGTGCAGGGTATAG+TGG | 0.415256 | tig0024111:+52695 | Msa1414360:intron |
| TTCGGGTTCTCTGTGTGCCT+TGG | 0.416848 | tig0024111:+51974 | Msa1414360:CDS |
| TATATGCAAAGTACATCTTC+AGG | 0.417199 | tig0024111:+53651 | Msa1414360:three_prime_UTR |
| TAATACTTTACAGGTGGTTA+AGG | 0.419065 | tig0024111:+53193 | Msa1414360:CDS |
| CTTTCAACAATGAAAGCAAT+TGG | 0.424577 | tig0024111:-50162 | Msa1414360:intergenic |
| CCACCATGAGAAGCATTAAA+GGG | 0.434152 | tig0024111:-52791 | Msa1414360:intergenic |
| TTAGGTACACTAACAGGAAT+TGG | 0.435923 | tig0024111:+51831 | Msa1414360:CDS |
| TACCTTGATTATTGTTGTTG+TGG | 0.442004 | tig0024111:-53172 | Msa1414360:intergenic |
| TTGCATCATCAAAATGGTGT+TGG | 0.456326 | tig0024111:+51921 | Msa1414360:CDS |
| TACCCCTTTAATGCTTCTCA+TGG | 0.459947 | tig0024111:+52788 | Msa1414360:CDS |
| TGAGTCAGTGGAAATTGGGT+TGG | 0.467607 | tig0024111:+52239 | Msa1414360:CDS |
| TTATCATGGCCGTTTCCTTA+GGG | 0.467781 | tig0024111:+51208 | Msa1414360:CDS |
| TAATTGAGTGACCACTTAGC+TGG | 0.476526 | tig0024111:+53512 | Msa1414360:three_prime_UTR |
| CAATGGTAGCTGTAATTTCA+TGG | 0.477017 | tig0024111:+52727 | Msa1414360:CDS |
| CCCTTTAATGCTTCTCATGG+TGG | 0.478738 | tig0024111:+52791 | Msa1414360:CDS |
| ACCAGCTGTAACCTTTATCA+TGG | 0.479465 | tig0024111:+51194 | Msa1414360:CDS |
| TTAAATTTGAGAACAAAAGC+AGG | 0.485502 | tig0024111:+51795 | Msa1414360:CDS |
| ATGGTGCAAATAGCATTTGC+TGG | 0.489060 | tig0024111:+50045 | Msa1414360:CDS |
| ATGTTGCTGAAGTTAAAGTC+AGG | 0.496408 | tig0024111:-51146 | Msa1414360:intergenic |
| GGCACACAGAGAACCCGAAA+TGG | 0.499459 | tig0024111:-51970 | Msa1414360:intergenic |
| AAAGGTGTTGAAATTAAGAT+GGG | 0.500659 | tig0024111:+51879 | Msa1414360:CDS |
| TGCTTGCTCTATGCTTTGAA+AGG | 0.500838 | tig0024111:+52212 | Msa1414360:CDS |
| AACGTGACATCCTTCTAGAT+TGG | 0.501879 | tig0024111:+53371 | Msa1414360:three_prime_UTR |
| CAATTGCTTTCATTGTTGAA+AGG | 0.507773 | tig0024111:+50163 | Msa1414360:CDS |
| AGAAGAGGGCAAAGATGACT+TGG | 0.516252 | tig0024111:+50496 | Msa1414360:CDS |
| GCTTGCTCTATGCTTTGAAA+GGG | 0.517954 | tig0024111:+52213 | Msa1414360:CDS |
| ACCATAACCATTAACAACGT+TGG | 0.520726 | tig0024111:-50027 | Msa1414360:intergenic |
| AACCACAACAACAATAATCA+AGG | 0.522875 | tig0024111:+53170 | Msa1414360:CDS |
| GGAGCGGTGTTGATTGTATG+TGG | 0.523594 | tig0024111:+53020 | Msa1414360:CDS |
| TGGCTTATATGCGGTTGTAT+GGG | 0.524020 | tig0024111:+53040 | Msa1414360:CDS |
| AACAGGAATTGGTGGGGCAA+TGG | 0.524744 | tig0024111:+51842 | Msa1414360:CDS |
| TAATACTTACCCTAAGGAAA+CGG | 0.528146 | tig0024111:-51217 | Msa1414360:intergenic |
| ACTACTAACCGTTGCTTATG+CGG | 0.544164 | tig0024111:+52270 | Msa1414360:CDS |
| GCTGTACTTGAGTAATGAGT+AGG | 0.552365 | tig0024111:-52154 | Msa1414360:intergenic |
| GCAAGCAAATATACCTTCCA+AGG | 0.555395 | tig0024111:-52851 | Msa1414360:intergenic |
| ATGAGAAACTACACCTTGGA+AGG | 0.557923 | tig0024111:+52838 | Msa1414360:CDS |
| TCAACTGGGTCAAATTCATG+TGG | 0.559483 | tig0024111:-53113 | Msa1414360:intergenic |
| TTTGAGAACAAAAGCAGGGA+AGG | 0.570188 | tig0024111:+51800 | Msa1414360:CDS |
| GTACACTAACAGGAATTGGT+GGG | 0.571060 | tig0024111:+51835 | Msa1414360:CDS |
| TTGAAAGGGATTTGAGTCAG+TGG | 0.574813 | tig0024111:+52227 | Msa1414360:CDS |
| CAACTGGGTCAAATTCATGT+GGG | 0.581445 | tig0024111:-53112 | Msa1414360:intergenic |
| AGCAACATTTGCATCCGCAA+TGG | 0.581666 | tig0024111:+51161 | Msa1414360:CDS |
| GGTACACTAACAGGAATTGG+TGG | 0.583339 | tig0024111:+51834 | Msa1414360:CDS |
| CAGAGTCAACTCCAGCTAAG+TGG | 0.583977 | tig0024111:-53523 | Msa1414360:intergenic |
| GCCATGATAAAGGTTACAGC+TGG | 0.584742 | tig0024111:-51195 | Msa1414360:intergenic |
| AAGCAGTTGCAAATACAAAA+CGG | 0.587659 | tig0024111:-50131 | Msa1414360:intergenic |
| TGGTATAAGGTTGGCCATTG+CGG | 0.589106 | tig0024111:-51175 | Msa1414360:intergenic |
| ACCCGAAATGGTATTAGCAG+TGG | 0.589256 | tig0024111:-51958 | Msa1414360:intergenic |
| CTGTACTTGAGTAATGAGTA+GGG | 0.589429 | tig0024111:-52153 | Msa1414360:intergenic |
| TAAATTTGAGAACAAAAGCA+GGG | 0.592408 | tig0024111:+51796 | Msa1414360:CDS |
| AATTTGTGTAATGTAGTGCA+AGG | 0.592733 | tig0024111:+49997 | Msa1414360:CDS |
| TATAGTGGTTTCAGGAGCAA+TGG | 0.595242 | tig0024111:+52710 | Msa1414360:CDS |
| TATATCAAACTCCTACATGT+TGG | 0.596245 | tig0024111:+53339 | Msa1414360:three_prime_UTR |
| GGTTACAGCTGGTATAAGGT+TGG | 0.597282 | tig0024111:-51184 | Msa1414360:intergenic |
| TGTTGCTGAAGTTAAAGTCA+GGG | 0.602599 | tig0024111:-51145 | Msa1414360:intergenic |
| ATAAGAGATGGCACTAGCCA+AGG | 0.602961 | tig0024111:-51991 | Msa1414360:intergenic |
| AGAATCAAAATAGAGTCCGC+TGG | 0.615362 | tig0024111:-53406 | Msa1414360:intergenic |
| AAGCCACAGTGCATAAGAGA+TGG | 0.619720 | tig0024111:-52003 | Msa1414360:intergenic |
| AGTTGCAAATACAAAACGGT+AGG | 0.621835 | tig0024111:-50127 | Msa1414360:intergenic |
| AAATTTCAGCATTATTGGAG+CGG | 0.626677 | tig0024111:+53004 | Msa1414360:intron |
| TTGAATGAGAAACTACACCT+TGG | 0.634029 | tig0024111:+52834 | Msa1414360:CDS |
| GGCTTATATGCGGTTGTATG+GGG | 0.639210 | tig0024111:+53041 | Msa1414360:CDS |
| ACCTCACAACTATTTCAACT+GGG | 0.643907 | tig0024111:-53127 | Msa1414360:intergenic |
| ACCCAGTTGAAATAGTTGTG+AGG | 0.644210 | tig0024111:+53126 | Msa1414360:CDS |
| TCATGGTGTGTACACATGAG+AGG | 0.646320 | tig0024111:+52744 | Msa1414360:CDS |
| TCAAGGTAATACTTTACAGG+TGG | 0.650018 | tig0024111:+53187 | Msa1414360:CDS |
| AAAGCATAGAGCAAGCACAA+TGG | 0.656633 | tig0024111:-52206 | Msa1414360:intergenic |
| CACCATGAGAAGCATTAAAG+GGG | 0.657738 | tig0024111:-52790 | Msa1414360:intergenic |
| TACACTAACAGGAATTGGTG+GGG | 0.658239 | tig0024111:+51836 | Msa1414360:CDS |
| GATTGTATGTGGCTTATATG+CGG | 0.658345 | tig0024111:+53031 | Msa1414360:CDS |
| CTAACATACCGCATAAGCAA+CGG | 0.664599 | tig0024111:-52278 | Msa1414360:intergenic |
| TACAAGTTAGCTGTAAACGA+TGG | 0.680743 | tig0024111:+50081 | Msa1414360:CDS |
| GTGCCATCTCTTATGCACTG+TGG | 0.699959 | tig0024111:+52000 | Msa1414360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTATTTTTTTCATGT+AGG | + | tig0024111:51091-51110 | Msa1414360:intron | 10.0% |
| !!! | TTTATTATTTTTTTCATGTA+GGG | + | tig0024111:51092-51111 | Msa1414360:intron | 10.0% |
| !! | AAAGATTAAACTATAAAATT+TGG | + | tig0024111:51317-51336 | Msa1414360:intron | 10.0% |
| !! | TAAATAAATAAAAAATCAGT+TGG | - | tig0024111:52097-52116 | Msa1414360:intergenic | 10.0% |
| !!! | TTATTACACTATTTTTATAA+TGG | - | tig0024111:52608-52627 | Msa1414360:intergenic | 10.0% |
| !! | TTTAGTTAATGAGTTAAAAA+TGG | - | tig0024111:51014-51033 | Msa1414360:intergenic | 15.0% |
| !!! | TTATTATTTTTTTCATGTAG+GGG | + | tig0024111:51093-51112 | Msa1414360:intron | 15.0% |
| !!! | ACCTATTATGTTTTTTTTTA+AGG | + | tig0024111:51340-51359 | Msa1414360:intron | 15.0% |
| !! | TCCTTAAAAAAAAACATAAT+AGG | - | tig0024111:51344-51363 | Msa1414360:intergenic | 15.0% |
| !!! | TTTTTTTTTGATAGAAATGA+GGG | - | tig0024111:51620-51639 | Msa1414360:intergenic | 15.0% |
| !!! | TTTTTTTTTTGATAGAAATG+AGG | - | tig0024111:51621-51640 | Msa1414360:intergenic | 15.0% |
| !! | TGAAAAATTAAAAGTTACAT+TGG | - | tig0024111:51764-51783 | Msa1414360:intergenic | 15.0% |
| !!! | TAACTTTTAATTTTTCAGTA+TGG | + | tig0024111:51767-51786 | Msa1414360:intron | 15.0% |
| !!! | TAATTTTCATTGATTGATAT+TGG | - | tig0024111:52067-52086 | Msa1414360:intergenic | 15.0% |
| !! | TTATATCCAATGATTAATTA+AGG | + | tig0024111:52328-52347 | Msa1414360:intron | 15.0% |
| !! | TTAAATCCTTAATTAATCAT+TGG | - | tig0024111:52337-52356 | Msa1414360:intergenic | 15.0% |
| !! | AATGGAGAATAAATAATTCA+TGG | + | tig0024111:50220-50239 | Msa1414360:intron | 20.0% |
| !!! | TATACTCTAACTATTTTAAG+TGG | + | tig0024111:50789-50808 | Msa1414360:intron | 20.0% |
| !! | TTGGGAATTATATTTGTTTA+AGG | + | tig0024111:50917-50936 | Msa1414360:intron | 20.0% |
| !! | AGTAACTCGTAAATTATAAT+TGG | - | tig0024111:51259-51278 | Msa1414360:intergenic | 20.0% |
| !! | AAGAAAGAGAGTTAATATAT+AGG | - | tig0024111:51375-51394 | Msa1414360:intergenic | 20.0% |
| !!! | ATTACGTAATAATTTGCAAA+GGG | - | tig0024111:51419-51438 | Msa1414360:intergenic | 20.0% |
| !!! | TATTACGTAATAATTTGCAA+AGG | - | tig0024111:51420-51439 | Msa1414360:intergenic | 20.0% |
| !!! | ATGATGTTATTTTCTTAAGT+TGG | + | tig0024111:52413-52432 | Msa1414360:intron | 20.0% |
| !!! | ACTTCCTATATTTTTTTTTG+TGG | + | tig0024111:52538-52557 | Msa1414360:intron | 20.0% |
| !! | GAAATACTAAGTTGTTTAAT+TGG | + | tig0024111:52911-52930 | Msa1414360:intron | 20.0% |
| !! | TATTTGACCTCAAAAAATTA+GGG | - | tig0024111:52938-52957 | Msa1414360:intergenic | 20.0% |
| !! | ATATTTGACCTCAAAAAATT+AGG | - | tig0024111:52939-52958 | Msa1414360:intergenic | 20.0% |
| !!! | AATGCTGAAATTTTTAACAA+AGG | - | tig0024111:52997-53016 | Msa1414360:intergenic | 20.0% |
| !! | GTTAAAAATTTCAGCATTAT+TGG | + | tig0024111:52999-53018 | Msa1414360:intron | 20.0% |
| !!! | AATTTGATACTCCATATTTT+AGG | - | tig0024111:53315-53334 | Msa1414360:intergenic | 20.0% |
| !!! | ATGCTATAATGTATTTTAGT+TGG | - | tig0024111:53432-53451 | Msa1414360:intergenic | 20.0% |
| !! | AAGAACAAAATGAAGAAAAA+GGG | + | tig0024111:53463-53482 | Msa1414360:three_prime_UTR | 20.0% |
| !! | CTCTTCTTATTTATGATCAA+TGG | + | tig0024111:50202-50221 | Msa1414360:intron | 25.0% |
| !! | TCTTTTCATACATATAGCTT+AGG | + | tig0024111:50340-50359 | Msa1414360:intron | 25.0% |
| ! | ATGTGATTTACTGTCATTAT+TGG | - | tig0024111:50388-50407 | Msa1414360:intergenic | 25.0% |
| !! | TATGCATGAAGATTTTCTTA+TGG | + | tig0024111:50592-50611 | Msa1414360:intron | 25.0% |
| ! | TGTAAACTGTGAAATATGAA+TGG | - | tig0024111:51061-51080 | Msa1414360:intergenic | 25.0% |
| !! | CTAAAGTATCTAATAGTACA+AGG | - | tig0024111:51559-51578 | Msa1414360:intergenic | 25.0% |
| !!! | ATGTAGTTTTTCCTTGTTTT+CGG | + | tig0024111:51587-51606 | Msa1414360:intron | 25.0% |
| ! | TTAAATTTGAGAACAAAAGC+AGG | + | tig0024111:51795-51814 | Msa1414360:CDS | 25.0% |
| ! | TAAATTTGAGAACAAAAGCA+GGG | + | tig0024111:51796-51815 | Msa1414360:CDS | 25.0% |
| !!! | TAAAGGTGTTGAAATTAAGA+TGG | + | tig0024111:51878-51897 | Msa1414360:CDS | 25.0% |
| !!! | AAAGGTGTTGAAATTAAGAT+GGG | + | tig0024111:51879-51898 | Msa1414360:CDS | 25.0% |
| ! | GATGATGCAAAAGATTTAAA+TGG | - | tig0024111:51911-51930 | Msa1414360:intergenic | 25.0% |
| !! | AATCTTTTGCATCATCAAAA+TGG | + | tig0024111:51915-51934 | Msa1414360:CDS | 25.0% |
| ! | GATATTTGTCATGATTTGAT+TGG | + | tig0024111:52456-52475 | Msa1414360:intron | 25.0% |
| !!! | TCCTATATTTTTTTTTGTGG+TGG | + | tig0024111:52541-52560 | Msa1414360:intron | 25.0% |
| ! | AGAAAATCATGTTTAGCTAT+TGG | + | tig0024111:52627-52646 | Msa1414360:intron | 25.0% |
| ! | TTGATTATTAATTCCACATG+AGG | + | tig0024111:52653-52672 | Msa1414360:intron | 25.0% |
| ! | TAATCAAGGTAATACTTTAC+AGG | + | tig0024111:53184-53203 | Msa1414360:CDS | 25.0% |
| ! | GAAGAACAAAATGAAGAAAA+AGG | + | tig0024111:53462-53481 | Msa1414360:three_prime_UTR | 25.0% |
| ! | GCTTAGATTTATATCTTTCA+TGG | + | tig0024111:53574-53593 | Msa1414360:three_prime_UTR | 25.0% |
| ! | ATGTACTTTGCATATATTGT+AGG | - | tig0024111:53647-53666 | Msa1414360:intergenic | 25.0% |
| AATTTGTGTAATGTAGTGCA+AGG | + | tig0024111:49997-50016 | Msa1414360:CDS | 30.0% | |
| AAGCAGTTGCAAATACAAAA+CGG | - | tig0024111:50134-50153 | Msa1414360:intergenic | 30.0% | |
| CTTTCAACAATGAAAGCAAT+TGG | - | tig0024111:50165-50184 | Msa1414360:intergenic | 30.0% | |
| CAATTGCTTTCATTGTTGAA+AGG | + | tig0024111:50163-50182 | Msa1414360:CDS | 30.0% | |
| ATACATATAGCTTAGGAAAG+TGG | + | tig0024111:50347-50366 | Msa1414360:intron | 30.0% | |
| ATTCTGTTCTAACTTCAAGT+GGG | - | tig0024111:50443-50462 | Msa1414360:intergenic | 30.0% | |
| !!! | CTGTTTCAGTCATTTTTATG+CGG | + | tig0024111:50525-50544 | Msa1414360:CDS | 30.0% |
| !! | TCATTTTTATGCGGTTTGTT+TGG | + | tig0024111:50534-50553 | Msa1414360:CDS | 30.0% |
| !! | CATTTTTATGCGGTTTGTTT+GGG | + | tig0024111:50535-50554 | Msa1414360:CDS | 30.0% |
| GCACTAGAAATACAAATCAA+TGG | - | tig0024111:50728-50747 | Msa1414360:intergenic | 30.0% | |
| TGAAAAGTGGACGTAAATAT+AGG | - | tig0024111:50750-50769 | Msa1414360:intergenic | 30.0% | |
| TTTGTTGAAGTCTTGAAAAG+TGG | - | tig0024111:50763-50782 | Msa1414360:intergenic | 30.0% | |
| TCAAACTCGGTATAAAATGT+TGG | + | tig0024111:50826-50845 | Msa1414360:intron | 30.0% | |
| CAAACTCGGTATAAAATGTT+GGG | + | tig0024111:50827-50846 | Msa1414360:intron | 30.0% | |
| TAATACTTACCCTAAGGAAA+CGG | - | tig0024111:51220-51239 | Msa1414360:intergenic | 30.0% | |
| TAGTACAAGGAAAAACTACA+AGG | - | tig0024111:51546-51565 | Msa1414360:intergenic | 30.0% | |
| !!! | TGTAGTTTTTCCTTGTTTTC+GGG | + | tig0024111:51588-51607 | Msa1414360:intron | 30.0% |
| AAGATATTAGGTACACTAAC+AGG | + | tig0024111:51825-51844 | Msa1414360:CDS | 30.0% | |
| !! | ATGGTATTGACATTCGTTAA+AGG | + | tig0024111:51861-51880 | Msa1414360:CDS | 30.0% |
| !!! | TACAGCGTTGATATCTTTTT+GGG | + | tig0024111:52171-52190 | Msa1414360:CDS | 30.0% |
| GCCACCACAAAAAAAAATAT+AGG | - | tig0024111:52545-52564 | Msa1414360:intergenic | 30.0% | |
| TGCATAATATATGCAACGTT+CGG | - | tig0024111:52581-52600 | Msa1414360:intergenic | 30.0% | |
| CATGTAAATTGAATTGTGCA+GGG | + | tig0024111:52687-52706 | Msa1414360:intron | 30.0% | |
| GTGTAGTTTCTCATTCAAAA+TGG | - | tig0024111:52832-52851 | Msa1414360:intergenic | 30.0% | |
| !!! | AATTGGACCCTAATTTTTTG+AGG | + | tig0024111:52928-52947 | Msa1414360:intron | 30.0% |
| AAATTTCAGCATTATTGGAG+CGG | + | tig0024111:53004-53023 | Msa1414360:intron | 30.0% | |
| !!! | AATTCATGTGGGTTTTTTGA+TGG | - | tig0024111:53104-53123 | Msa1414360:intergenic | 30.0% |
| !!! | GTTGCTTTTATCTTCTTCTA+TGG | - | tig0024111:53153-53172 | Msa1414360:intergenic | 30.0% |
| AACCACAACAACAATAATCA+AGG | + | tig0024111:53170-53189 | Msa1414360:CDS | 30.0% | |
| ! | TACCTTGATTATTGTTGTTG+TGG | - | tig0024111:53175-53194 | Msa1414360:intergenic | 30.0% |
| TAATACTTTACAGGTGGTTA+AGG | + | tig0024111:53193-53212 | Msa1414360:CDS | 30.0% | |
| GTAGAAAGTCAAAAAAAACG+AGG | + | tig0024111:53263-53282 | Msa1414360:CDS | 30.0% | |
| AAAGTCAAAAAAAACGAGGA+GGG | + | tig0024111:53267-53286 | Msa1414360:CDS | 30.0% | |
| TGCATGTAATGCCTAAAATA+TGG | + | tig0024111:53301-53320 | Msa1414360:exon | 30.0% | |
| TATATCAAACTCCTACATGT+TGG | + | tig0024111:53339-53358 | Msa1414360:three_prime_UTR | 30.0% | |
| TATATGCAAAGTACATCTTC+AGG | + | tig0024111:53651-53670 | Msa1414360:three_prime_UTR | 30.0% | |
| ! | TTTGAAGCCAACGTTGTTAA+TGG | + | tig0024111:50020-50039 | Msa1414360:CDS | 35.0% |
| ACCATAACCATTAACAACGT+TGG | - | tig0024111:50030-50049 | Msa1414360:intergenic | 35.0% | |
| TACAAGTTAGCTGTAAACGA+TGG | + | tig0024111:50081-50100 | Msa1414360:CDS | 35.0% | |
| TAAACGATGGCATGAGTTTA+AGG | + | tig0024111:50094-50113 | Msa1414360:CDS | 35.0% | |
| AGTTGCAAATACAAAACGGT+AGG | - | tig0024111:50130-50149 | Msa1414360:intergenic | 35.0% | |
| TTCTGTTCTAACTTCAAGTG+GGG | - | tig0024111:50442-50461 | Msa1414360:intergenic | 35.0% | |
| CATTCTGTTCTAACTTCAAG+TGG | - | tig0024111:50444-50463 | Msa1414360:intergenic | 35.0% | |
| ! | GCTTTTGTTAATTTTGCTGC+AGG | + | tig0024111:50472-50491 | Msa1414360:intron | 35.0% |
| CATAGTCGATGTTTCAAACT+CGG | + | tig0024111:50813-50832 | Msa1414360:intron | 35.0% | |
| TGTTGCTGAAGTTAAAGTCA+GGG | - | tig0024111:51148-51167 | Msa1414360:intergenic | 35.0% | |
| ATGTTGCTGAAGTTAAAGTC+AGG | - | tig0024111:51149-51168 | Msa1414360:intergenic | 35.0% | |
| TAAAGGTTACAGCTGGTATA+AGG | - | tig0024111:51191-51210 | Msa1414360:intergenic | 35.0% | |
| GACACTTAATACTTACCCTA+AGG | - | tig0024111:51226-51245 | Msa1414360:intergenic | 35.0% | |
| TTAGGTACACTAACAGGAAT+TGG | + | tig0024111:51831-51850 | Msa1414360:CDS | 35.0% | |
| TTGCATCATCAAAATGGTGT+TGG | + | tig0024111:51921-51940 | Msa1414360:CDS | 35.0% | |
| CTGTACTTGAGTAATGAGTA+GGG | - | tig0024111:52156-52175 | Msa1414360:intergenic | 35.0% | |
| !!! | GTACAGCGTTGATATCTTTT+TGG | + | tig0024111:52170-52189 | Msa1414360:CDS | 35.0% |
| GATTTGAGTCAGTGGAAATT+GGG | + | tig0024111:52235-52254 | Msa1414360:CDS | 35.0% | |
| ACATCATCGAGTGATTTGAT+TGG | - | tig0024111:52400-52419 | Msa1414360:intergenic | 35.0% | |
| CATAATATATGCAACGTTCG+GGG | - | tig0024111:52579-52598 | Msa1414360:intergenic | 35.0% | |
| GCATAATATATGCAACGTTC+GGG | - | tig0024111:52580-52599 | Msa1414360:intergenic | 35.0% | |
| CCTGCACAATTCAATTTACA+TGG | - | tig0024111:52689-52708 | Msa1414360:intergenic | 35.0% | |
| CCATGTAAATTGAATTGTGC+AGG | + | tig0024111:52686-52705 | Msa1414360:intron | 35.0% | |
| CAATGGTAGCTGTAATTTCA+TGG | + | tig0024111:52727-52746 | Msa1414360:CDS | 35.0% | |
| GTAAAAACTGAGGCAAACAA+TGG | - | tig0024111:52771-52790 | Msa1414360:intergenic | 35.0% | |
| CATTAAAGGGGTAAAAACTG+AGG | - | tig0024111:52781-52800 | Msa1414360:intergenic | 35.0% | |
| TTGAATGAGAAACTACACCT+TGG | + | tig0024111:52834-52853 | Msa1414360:CDS | 35.0% | |
| GATTGTATGTGGCTTATATG+CGG | + | tig0024111:53031-53050 | Msa1414360:CDS | 35.0% | |
| ACCTCACAACTATTTCAACT+GGG | - | tig0024111:53130-53149 | Msa1414360:intergenic | 35.0% | |
| TCAAGGTAATACTTTACAGG+TGG | + | tig0024111:53187-53206 | Msa1414360:CDS | 35.0% | |
| GAAAGTCAAAAAAAACGAGG+AGG | + | tig0024111:53266-53285 | Msa1414360:CDS | 35.0% | |
| AAGTCAAAAAAAACGAGGAG+GGG | + | tig0024111:53268-53287 | Msa1414360:CDS | 35.0% | |
| ! | TTCATTTTGGACCAACATGT+AGG | - | tig0024111:53353-53372 | Msa1414360:intergenic | 35.0% |
| GCCAACGTTGTTAATGGTTA+TGG | + | tig0024111:50026-50045 | Msa1414360:CDS | 40.0% | |
| ATGGTGCAAATAGCATTTGC+TGG | + | tig0024111:50045-50064 | Msa1414360:CDS | 40.0% | |
| ! | AATTTTGCTGCAGGAAGAAG+AGG | + | tig0024111:50481-50500 | Msa1414360:intron | 40.0% |
| ! | ATTTTGCTGCAGGAAGAAGA+GGG | + | tig0024111:50482-50501 | Msa1414360:intron | 40.0% |
| TTCAAGTACGAATGTAGCAG+TGG | + | tig0024111:50645-50664 | Msa1414360:intron | 40.0% | |
| CACGCTTGCTTTATAGTACT+TGG | - | tig0024111:50693-50712 | Msa1414360:intergenic | 40.0% | |
| ACCAGCTGTAACCTTTATCA+TGG | + | tig0024111:51194-51213 | Msa1414360:CDS | 40.0% | |
| TAAGGAAACGGCCATGATAA+AGG | - | tig0024111:51208-51227 | Msa1414360:intergenic | 40.0% | |
| TTTATCATGGCCGTTTCCTT+AGG | + | tig0024111:51207-51226 | Msa1414360:CDS | 40.0% | |
| TTATCATGGCCGTTTCCTTA+GGG | + | tig0024111:51208-51227 | Msa1414360:CDS | 40.0% | |
| TTTGAGAACAAAAGCAGGGA+AGG | + | tig0024111:51800-51819 | Msa1414360:CDS | 40.0% | |
| GTACACTAACAGGAATTGGT+GGG | + | tig0024111:51835-51854 | Msa1414360:CDS | 40.0% | |
| TACACTAACAGGAATTGGTG+GGG | + | tig0024111:51836-51855 | Msa1414360:CDS | 40.0% | |
| CTCCACTGCTAATACCATTT+CGG | + | tig0024111:51956-51975 | Msa1414360:CDS | 40.0% | |
| TCCACTGCTAATACCATTTC+GGG | + | tig0024111:51957-51976 | Msa1414360:CDS | 40.0% | |
| TGCACTGTGGCTTATTATTC+AGG | + | tig0024111:52013-52032 | Msa1414360:CDS | 40.0% | |
| GCTGTACTTGAGTAATGAGT+AGG | - | tig0024111:52157-52176 | Msa1414360:intergenic | 40.0% | |
| AAAGCATAGAGCAAGCACAA+TGG | - | tig0024111:52209-52228 | Msa1414360:intergenic | 40.0% | |
| ! | TGCTTGCTCTATGCTTTGAA+AGG | + | tig0024111:52212-52231 | Msa1414360:CDS | 40.0% |
| !! | GCTTGCTCTATGCTTTGAAA+GGG | + | tig0024111:52213-52232 | Msa1414360:CDS | 40.0% |
| TTGAAAGGGATTTGAGTCAG+TGG | + | tig0024111:52227-52246 | Msa1414360:CDS | 40.0% | |
| GGATTTGAGTCAGTGGAAAT+TGG | + | tig0024111:52234-52253 | Msa1414360:CDS | 40.0% | |
| ACTACTAACCGTTGCTTATG+CGG | + | tig0024111:52270-52289 | Msa1414360:CDS | 40.0% | |
| CTAACATACCGCATAAGCAA+CGG | - | tig0024111:52281-52300 | Msa1414360:intergenic | 40.0% | |
| !!! | ATTTTTTTTTGTGGTGGCCG+TGG | + | tig0024111:52547-52566 | Msa1414360:intron | 40.0% |
| TGGTATATCTTAGCCTCATG+TGG | - | tig0024111:52669-52688 | Msa1414360:intergenic | 40.0% | |
| TTGAATTGTGCAGGGTATAG+TGG | + | tig0024111:52695-52714 | Msa1414360:intron | 40.0% | |
| TATAGTGGTTTCAGGAGCAA+TGG | + | tig0024111:52710-52729 | Msa1414360:CDS | 40.0% | |
| TACCCCTTTAATGCTTCTCA+TGG | + | tig0024111:52788-52807 | Msa1414360:CDS | 40.0% | |
| !! | CACCATGAGAAGCATTAAAG+GGG | - | tig0024111:52793-52812 | Msa1414360:intergenic | 40.0% |
| !! | CCACCATGAGAAGCATTAAA+GGG | - | tig0024111:52794-52813 | Msa1414360:intergenic | 40.0% |
| ATGAGAAACTACACCTTGGA+AGG | + | tig0024111:52838-52857 | Msa1414360:CDS | 40.0% | |
| GCAAGCAAATATACCTTCCA+AGG | - | tig0024111:52854-52873 | Msa1414360:intergenic | 40.0% | |
| TGGCTTATATGCGGTTGTAT+GGG | + | tig0024111:53040-53059 | Msa1414360:CDS | 40.0% | |
| CAACTGGGTCAAATTCATGT+GGG | - | tig0024111:53115-53134 | Msa1414360:intergenic | 40.0% | |
| TCAACTGGGTCAAATTCATG+TGG | - | tig0024111:53116-53135 | Msa1414360:intergenic | 40.0% | |
| ACCCAGTTGAAATAGTTGTG+AGG | + | tig0024111:53126-53145 | Msa1414360:CDS | 40.0% | |
| GACCTCACAACTATTTCAAC+TGG | - | tig0024111:53131-53150 | Msa1414360:intergenic | 40.0% | |
| ! | GAAGGATGTCACGTTCATTT+TGG | - | tig0024111:53366-53385 | Msa1414360:intergenic | 40.0% |
| AACGTGACATCCTTCTAGAT+TGG | + | tig0024111:53371-53390 | Msa1414360:three_prime_UTR | 40.0% | |
| !!! | GCATTTTTGGCCAATCTAGA+AGG | - | tig0024111:53384-53403 | Msa1414360:intergenic | 40.0% |
| AGAATCAAAATAGAGTCCGC+TGG | - | tig0024111:53409-53428 | Msa1414360:intergenic | 40.0% | |
| TAATTGAGTGACCACTTAGC+TGG | + | tig0024111:53512-53531 | Msa1414360:three_prime_UTR | 40.0% | |
| AGAAGAGGGCAAAGATGACT+TGG | + | tig0024111:50496-50515 | Msa1414360:CDS | 45.0% | |
| AGCAACATTTGCATCCGCAA+TGG | + | tig0024111:51161-51180 | Msa1414360:CDS | 45.0% | |
| ! | TGGTATAAGGTTGGCCATTG+CGG | - | tig0024111:51178-51197 | Msa1414360:intergenic | 45.0% |
| GGTTACAGCTGGTATAAGGT+TGG | - | tig0024111:51187-51206 | Msa1414360:intergenic | 45.0% | |
| GCCATGATAAAGGTTACAGC+TGG | - | tig0024111:51198-51217 | Msa1414360:intergenic | 45.0% | |
| GCAGGGAAGGCAAAGATATT+AGG | + | tig0024111:51813-51832 | Msa1414360:CDS | 45.0% | |
| GGTACACTAACAGGAATTGG+TGG | + | tig0024111:51834-51853 | Msa1414360:CDS | 45.0% | |
| ACCCGAAATGGTATTAGCAG+TGG | - | tig0024111:51961-51980 | Msa1414360:intergenic | 45.0% | |
| ATAAGAGATGGCACTAGCCA+AGG | - | tig0024111:51994-52013 | Msa1414360:intergenic | 45.0% | |
| AAGCCACAGTGCATAAGAGA+TGG | - | tig0024111:52006-52025 | Msa1414360:intergenic | 45.0% | |
| TGAGTCAGTGGAAATTGGGT+TGG | + | tig0024111:52239-52258 | Msa1414360:CDS | 45.0% | |
| AACGTTCGGGGTTTAAACCA+CGG | - | tig0024111:52567-52586 | Msa1414360:intergenic | 45.0% | |
| TCATGGTGTGTACACATGAG+AGG | + | tig0024111:52744-52763 | Msa1414360:CDS | 45.0% | |
| CCCTTTAATGCTTCTCATGG+TGG | + | tig0024111:52791-52810 | Msa1414360:CDS | 45.0% | |
| !! | GCCACCATGAGAAGCATTAA+AGG | - | tig0024111:52795-52814 | Msa1414360:intergenic | 45.0% |
| AATGCTTCTCATGGTGGCTT+TGG | + | tig0024111:52797-52816 | Msa1414360:CDS | 45.0% | |
| GTGGCTTATATGCGGTTGTA+TGG | + | tig0024111:53039-53058 | Msa1414360:CDS | 45.0% | |
| GGCTTATATGCGGTTGTATG+GGG | + | tig0024111:53041-53060 | Msa1414360:CDS | 45.0% | |
| TTGGCCAAAAATGCTACCAG+CGG | + | tig0024111:53390-53409 | Msa1414360:three_prime_UTR | 45.0% | |
| !! | AATTAATTAATCAATTAATT+AGG | - | tig0024111:50414-50433 | Msa1414360:intergenic | 5.0% |
| !! | ATGTTAAAATATAATAATAT+TGG | + | tig0024111:50898-50917 | Msa1414360:intron | 5.0% |
| !! | TGTTAAAATATAATAATATT+GGG | + | tig0024111:50899-50918 | Msa1414360:intron | 5.0% |
| !!! | TTTTATTTATTTATTGATTT+TGG | + | tig0024111:52104-52123 | Msa1414360:intron | 5.0% |
| !!! | TTTATTTATTTATTGATTTT+GGG | + | tig0024111:52105-52124 | Msa1414360:intron | 5.0% |
| !! | ATGATTAATAAATTTATAAA+AGG | - | tig0024111:52876-52895 | Msa1414360:intergenic | 5.0% |
| !! | AAATATAATATTTACTTTAT+TGG | + | tig0024111:52953-52972 | Msa1414360:intron | 5.0% |
| AACAGGAATTGGTGGGGCAA+TGG | + | tig0024111:51842-51861 | Msa1414360:CDS | 50.0% | |
| GTGCCATCTCTTATGCACTG+TGG | + | tig0024111:52000-52019 | Msa1414360:CDS | 50.0% | |
| GTGCAGGGTATAGTGGTTTC+AGG | + | tig0024111:52702-52721 | Msa1414360:intron | 50.0% | |
| !! | GGAGCGGTGTTGATTGTATG+TGG | + | tig0024111:53020-53039 | Msa1414360:CDS | 50.0% |
| ! | GAGTCCGCTGGTAGCATTTT+TGG | - | tig0024111:53397-53416 | Msa1414360:intergenic | 50.0% |
| CAGAGTCAACTCCAGCTAAG+TGG | - | tig0024111:53526-53545 | Msa1414360:intergenic | 50.0% | |
| AGGGCGTAAGCCCGAAAACA+AGG | - | tig0024111:51601-51620 | Msa1414360:intergenic | 55.0% | |
| GGCACACAGAGAACCCGAAA+TGG | - | tig0024111:51973-51992 | Msa1414360:intergenic | 55.0% | |
| ! | TTCGGGTTCTCTGTGTGCCT+TGG | + | tig0024111:51974-51993 | Msa1414360:CDS | 55.0% |
| !! | CTTCTCATGGTGGCTTTGGC+TGG | + | tig0024111:52801-52820 | Msa1414360:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024111 | gene | 49988 | 53718 | 49988 | ID=Msa1414360;Name=Msa1414360 |
| tig0024111 | mRNA | 49988 | 53718 | 49988 | ID=Msa1414360-mRNA-1;Parent=Msa1414360;Name=Msa1414360-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.66|0.42|1|1|1|7|402|413 |
| tig0024111 | exon | 49988 | 50184 | 49988 | ID=Msa1414360-mRNA-1:exon:21732;Parent=Msa1414360-mRNA-1 |
| tig0024111 | exon | 50494 | 50556 | 50494 | ID=Msa1414360-mRNA-1:exon:21733;Parent=Msa1414360-mRNA-1 |
| tig0024111 | exon | 51113 | 51229 | 51113 | ID=Msa1414360-mRNA-1:exon:21734;Parent=Msa1414360-mRNA-1 |
| tig0024111 | exon | 51785 | 52034 | 51785 | ID=Msa1414360-mRNA-1:exon:21735;Parent=Msa1414360-mRNA-1 |
| tig0024111 | exon | 52133 | 52291 | 52133 | ID=Msa1414360-mRNA-1:exon:21736;Parent=Msa1414360-mRNA-1 |
| tig0024111 | exon | 52708 | 52859 | 52708 | ID=Msa1414360-mRNA-1:exon:21737;Parent=Msa1414360-mRNA-1 |
| tig0024111 | exon | 53013 | 53718 | 53013 | ID=Msa1414360-mRNA-1:exon:21738;Parent=Msa1414360-mRNA-1 |
| tig0024111 | CDS | 49988 | 50184 | 49988 | ID=Msa1414360-mRNA-1:cds;Parent=Msa1414360-mRNA-1 |
| tig0024111 | CDS | 50494 | 50556 | 50494 | ID=Msa1414360-mRNA-1:cds;Parent=Msa1414360-mRNA-1 |
| tig0024111 | CDS | 51113 | 51229 | 51113 | ID=Msa1414360-mRNA-1:cds;Parent=Msa1414360-mRNA-1 |
| tig0024111 | CDS | 51785 | 52034 | 51785 | ID=Msa1414360-mRNA-1:cds;Parent=Msa1414360-mRNA-1 |
| tig0024111 | CDS | 52133 | 52291 | 52133 | ID=Msa1414360-mRNA-1:cds;Parent=Msa1414360-mRNA-1 |
| tig0024111 | CDS | 52708 | 52859 | 52708 | ID=Msa1414360-mRNA-1:cds;Parent=Msa1414360-mRNA-1 |
| tig0024111 | CDS | 53013 | 53316 | 53013 | ID=Msa1414360-mRNA-1:cds;Parent=Msa1414360-mRNA-1 |
| tig0024111 | three_prime_UTR | 53317 | 53718 | 53317 | ID=Msa1414360-mRNA-1:three_prime_utr;Parent=Msa1414360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
