AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0275650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0275650 MtrunA17_Chr6g0459221 93.103 58 4 0 2 59 178 235 4.11e-33 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0275650 AT4G39630.2 65.000 60 20 1 1 59 160 219 9.28e-20 81.6
Msa0275650 AT4G39630.1 65.000 60 20 1 1 59 173 232 1.38e-19 81.3

Find 117 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAATTAATCATACCATTTA+TGG 0.077957 2_3:+7799751 None:intergenic
ACCCACTCAATTCTGATTTA+TGG 0.091337 2_3:-7804011 Msa0275650:intron
GCATCAATATTTAACTTAAT+TGG 0.116481 2_3:+7800790 None:intergenic
TATCTTCCTATGTAGATATT+TGG 0.179187 2_3:-7798473 Msa0275650:CDS
CTTGGGAACCCGAAGTGTTT+TGG 0.200607 2_3:+7799841 None:intergenic
CTATGTAGATATTTGGAATA+AGG 0.271684 2_3:-7798466 Msa0275650:intron
AACAAAATCAAACAACTAAA+TGG 0.273456 2_3:+7800334 None:intergenic
CCATACAATGTCTACATTAT+AGG 0.287632 2_3:-7800656 Msa0275650:five_prime_UTR
GCTTTCACATCATTTCCTTA+TGG 0.297685 2_3:-7797969 Msa0275650:CDS
GGTGAAATTCCGAATGAGTT+TGG 0.326879 2_3:-7801495 Msa0275650:five_prime_UTR
AATAACATGGAAGCCATAAA+TGG 0.330124 2_3:-7799764 Msa0275650:intron
TTGCCAATGTGATCTGTATA+TGG 0.340719 2_3:-7801250 Msa0275650:five_prime_UTR
TACAAACATGTCTATTGTAT+AGG 0.349271 2_3:-7800078 Msa0275650:five_prime_UTR
TACCTTCAATAAGAATTATA+AGG 0.353760 2_3:-7801426 Msa0275650:five_prime_UTR
CATGTCTATTGTATAGGCTT+TGG 0.355751 2_3:-7800072 Msa0275650:five_prime_UTR
GTGGAGTTTGGTGAAGAAAT+TGG 0.359563 2_3:+7804100 None:intergenic
AAGAAATTGGTGAAATTTGA+TGG 0.360739 2_3:+7804113 None:intergenic
GTGAAATTCCGAATGAGTTT+GGG 0.372675 2_3:-7801494 Msa0275650:five_prime_UTR
CATTGGCAAATGTCACAAAA+AGG 0.373345 2_3:+7801264 None:intergenic
ACAGAAAGAAGCATCTTTCC+AGG 0.373693 2_3:+7799818 None:intergenic
TGTATATGGTTTCCAATTGC+GGG 0.380127 2_3:-7801236 Msa0275650:five_prime_UTR
TTATCAAACTATATAGTTGT+TGG 0.387443 2_3:-7800117 Msa0275650:five_prime_UTR
CACCTTATAATTCTTATTGA+AGG 0.388241 2_3:+7801424 None:intergenic
TTACATAGAACATACCTTAT+GGG 0.397491 2_3:+7803718 None:intergenic
GTAATGTCTTGAATCTTCAT+TGG 0.410104 2_3:-7800294 Msa0275650:five_prime_UTR
AAGAAGCATCTTTCCAGGCT+TGG 0.410513 2_3:+7799823 None:intergenic
AGAAGCATCTTTCCAGGCTT+GGG 0.410722 2_3:+7799824 None:intergenic
CCTATAATGTAGACATTGTA+TGG 0.410759 2_3:+7800656 None:intergenic
ATAAAGGTCTGCAGACAAAA+AGG 0.412691 2_3:-7798073 Msa0275650:intron
TCTAGCAGAATGATAATTGA+AGG 0.420059 2_3:-7803388 Msa0275650:intron
TCATATTTGCATGTGGAGTT+TGG 0.421367 2_3:+7804088 None:intergenic
ACACTTCGGGTTCCCAAGCC+TGG 0.425410 2_3:-7799836 Msa0275650:CDS
GCCGTGGCAGCACCCGCAAT+TGG 0.428727 2_3:+7801224 None:intergenic
AGCGCCGTAACGAGGGCATT+GGG 0.430026 2_3:-7801138 Msa0275650:five_prime_UTR
TCAAGCTTCCCAAACTCATT+CGG 0.430405 2_3:+7801486 None:intergenic
TATATAGAACTAGCAAGATT+AGG 0.433817 2_3:-7800691 Msa0275650:five_prime_UTR
GTCTATTGTATAGGCTTTGG+AGG 0.440001 2_3:-7800069 Msa0275650:five_prime_UTR
GTAAAACCAGTCCAACCATT+TGG 0.442600 2_3:+7800474 None:intergenic
ACTTGTTAGATCATTAGATT+AGG 0.443257 2_3:+7804050 None:intergenic
GATGACACCCAAAACACTTC+GGG 0.448978 2_3:-7799849 Msa0275650:CDS
TCCAATTGCGGGTGCTGCCA+CGG 0.451085 2_3:-7801225 Msa0275650:five_prime_UTR
TGCACCCAATGCCCTCGTTA+CGG 0.453861 2_3:+7801134 None:intergenic
GAGGACACTAGAGTGGGAAT+TGG 0.456363 2_3:-7803428 Msa0275650:five_prime_UTR
AAACCATGGTTCTTTGTGCT+TGG 0.459388 2_3:-7800822 Msa0275650:five_prime_UTR
ACAAGTAAAACAAGTGATGC+AGG 0.460025 2_3:-7800453 Msa0275650:five_prime_UTR
CAGCGCCGTAACGAGGGCAT+TGG 0.460672 2_3:-7801139 Msa0275650:five_prime_UTR
ATTTGCAGTGCTGTTGGTAG+TGG 0.460740 2_3:-7800559 Msa0275650:five_prime_UTR
GTTTGTAGAAAATAGCTTTG+TGG 0.465118 2_3:+7800094 None:intergenic
ATTGGTGAAATTTGATGGAA+TGG 0.466997 2_3:+7804118 None:intergenic
TGTGGTTGAGAGAAGTAGAT+TGG 0.471161 2_3:-7798027 Msa0275650:CDS
AAGATGCTTCTTTCTGTCCA+TGG 0.474825 2_3:-7799812 Msa0275650:CDS
GTAATTGAATGATAATCAAC+TGG 0.476814 2_3:-7801520 Msa0275650:five_prime_UTR
TATGATAATTTCATCCCATA+AGG 0.480276 2_3:-7803732 Msa0275650:intron
ATCACACTGCAATTGCAACT+TGG 0.484272 2_3:+7801183 None:intergenic
CAAGAAGGTCTTCTGACTCC+TGG 0.484397 2_3:-7800017 Msa0275650:CDS
AAAATTAAGTTGACGCCGCA+AGG 0.485545 2_3:-7800912 Msa0275650:five_prime_UTR
TTAAAATGCAGCCGCGGTTG+CGG 0.487955 2_3:+7800844 None:intergenic
TTTGTTACTCATTGCTGACT+AGG 0.489939 2_3:-7800317 Msa0275650:five_prime_UTR
AAGGGGCCAAATGGTTGGAC+TGG 0.491488 2_3:-7800480 Msa0275650:five_prime_UTR
TGATGGAATGGAGAGAAGAG+AGG 0.491759 2_3:+7804130 None:intergenic
CTGTATATGGTTTCCAATTG+CGG 0.493764 2_3:-7801237 Msa0275650:five_prime_UTR
ATTGTCCTTGTAAACACCTA+GGG 0.494564 2_3:+7799784 None:intergenic
GACGCATCTAAACTGAAATC+TGG 0.495757 2_3:-7798498 Msa0275650:CDS
ACCTCAAGATTACTTCCATA+AGG 0.496350 2_3:+7797954 None:intergenic
ATATTTATGATAGCCATGTA+TGG 0.514750 2_3:-7800584 Msa0275650:five_prime_UTR
ATTAGAACAATATAATAAGT+AGG 0.516081 2_3:-7800173 Msa0275650:five_prime_UTR
AGTGGTCAAAATCAATACCT+TGG 0.524178 2_3:-7800518 Msa0275650:five_prime_UTR
AACAGATGACTATTTGTATG+AGG 0.524644 2_3:-7801313 Msa0275650:intron
TCTGTCCATGGATCACCCCT+AGG 0.525999 2_3:-7799800 Msa0275650:CDS
ACATTATAGGAGAATTTAAG+AGG 0.528369 2_3:-7800643 Msa0275650:five_prime_UTR
TACTTAGAGATAAAGATGAA+TGG 0.531319 2_3:-7800268 Msa0275650:five_prime_UTR
GGATGACACCCAAAACACTT+CGG 0.531639 2_3:-7799850 Msa0275650:CDS
TTGCGATATTGCAGCTATTG+CGG 0.533335 2_3:+7800876 None:intergenic
GGTGAAGCCGTGTGTTTGAG+AGG 0.534984 2_3:+7804152 None:intergenic
ATGGAAGTAATCTTGAGGTA+TGG 0.536882 2_3:-7797950 Msa0275650:CDS
TTGTTACTCATTGCTGACTA+GGG 0.539866 2_3:-7800316 Msa0275650:five_prime_UTR
CACTAGAGTGGGAATTGGCA+AGG 0.548048 2_3:-7803423 Msa0275650:five_prime_UTR
GATGGAATGGAGAGAAGAGA+GGG 0.548358 2_3:+7804131 None:intergenic
CTTATTCCAAATATCTACAT+AGG 0.550500 2_3:+7798467 None:intergenic
AAAGGCAGCGACCGCAACCG+CGG 0.558592 2_3:-7800855 Msa0275650:five_prime_UTR
TATTGTCCTTGTAAACACCT+AGG 0.567249 2_3:+7799783 None:intergenic
ACCATAAATCAGAATTGAGT+GGG 0.567606 2_3:+7804010 None:intergenic
TACAAAATCATATTTGCATG+TGG 0.569031 2_3:+7804081 None:intergenic
CGTGTGTTTGAGAGGAGAGA+GGG 0.570605 2_3:+7804160 None:intergenic
CAAGTAAAACAAGTGATGCA+GGG 0.575227 2_3:-7800452 Msa0275650:five_prime_UTR
GAGGAGAGAGGACACTAGAG+TGG 0.575461 2_3:-7803435 Msa0275650:five_prime_UTR
GCACTGCAAATTTCCATACA+TGG 0.581129 2_3:+7800571 None:intergenic
TCCTTATGGAAGTAATCTTG+AGG 0.585475 2_3:-7797955 Msa0275650:CDS
ATCACCCCTAGGTGTTTACA+AGG 0.589706 2_3:-7799789 Msa0275650:CDS
CACCATAAATCAGAATTGAG+TGG 0.601725 2_3:+7804009 None:intergenic
AGGAGAGAGGACACTAGAGT+GGG 0.604291 2_3:-7803434 Msa0275650:five_prime_UTR
GCAACTCAGAAATCTGTCAC+TGG 0.606369 2_3:+7803570 None:intergenic
GAAACCGCAGCGCCGTAACG+AGG 0.608433 2_3:-7801146 Msa0275650:five_prime_UTR
CCGTGTGTTTGAGAGGAGAG+AGG 0.608978 2_3:+7804159 None:intergenic
AAACCGCAGCGCCGTAACGA+GGG 0.610553 2_3:-7801145 Msa0275650:five_prime_UTR
AAGTAAAACAAGTGATGCAG+GGG 0.612390 2_3:-7800451 Msa0275650:five_prime_UTR
CAGATGTTAGCGATGCAAGA+AGG 0.615125 2_3:-7800032 Msa0275650:CDS
ATGGAAATTTGCAGTGCTGT+TGG 0.620859 2_3:-7800565 Msa0275650:five_prime_UTR
TTTAAAACTTAGTAAAACCA+AGG 0.621699 2_3:+7800501 None:intergenic
ATTGAATGATAATCAACTGG+TGG 0.623328 2_3:-7801517 Msa0275650:five_prime_UTR
AAACACCTAGGGGTGATCCA+TGG 0.624497 2_3:+7799795 None:intergenic
GCTAACATCTGAGTTTCAGA+TGG 0.626740 2_3:+7800044 None:intergenic
CAATAGCTGCAATATCGCAA+AGG 0.631819 2_3:-7800873 Msa0275650:five_prime_UTR
CCTCTCTCCTCTCAAACACA+CGG 0.632486 2_3:-7804159 Msa0275650:five_prime_UTR
TTGAATGATAATCAACTGGT+GGG 0.648498 2_3:-7801516 Msa0275650:five_prime_UTR
AGAACAATATAATAAGTAGG+TGG 0.653436 2_3:-7800170 Msa0275650:five_prime_UTR
ACTAGAGTGGGAATTGGCAA+GGG 0.655908 2_3:-7803422 Msa0275650:five_prime_UTR
ATGCCCTCGTTACGGCGCTG+CGG 0.657831 2_3:+7801142 None:intergenic
AAACCATATACAGATCACAT+TGG 0.667771 2_3:+7801247 None:intergenic
CTTTGGAAAATAAAGCAATG+TGG 0.672010 2_3:-7798045 Msa0275650:CDS
GAAAGCTACACCAACAACAG+TGG 0.674809 2_3:+7800389 None:intergenic
TGTTTACAAGGACAATAACA+TGG 0.678598 2_3:-7799777 Msa0275650:CDS
TTGTCCTTGTAAACACCTAG+GGG 0.684309 2_3:+7799785 None:intergenic
CGTGATTACAGATAATGCCG+TGG 0.685003 2_3:+7801208 None:intergenic
ACACCAAGCACAAAGAACCA+TGG 0.715252 2_3:+7800819 None:intergenic
TTGGGTGCAGAAAACTACAG+AGG 0.735727 2_3:-7801120 Msa0275650:five_prime_UTR
GGTGTGTATTGTCGTCCTTG+CGG 0.769996 2_3:+7800897 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGATTTTCTATTTATAATT+TGG - chr2_3:7800054-7800073 Msa0275650:five_prime_UTR 10.0%
!! TATAATTTGGAAAAATTATT+TGG - chr2_3:7800067-7800086 Msa0275650:five_prime_UTR 10.0%
!!! TAAAATATTTCTAAAATGTA+AGG - chr2_3:7802863-7802882 Msa0275650:intron 10.0%
!!! AAAATATTTCTAAAATGTAA+GGG - chr2_3:7802864-7802883 Msa0275650:intron 10.0%
!!! TAAAGAAGATTTTAAAATAT+TGG + chr2_3:7803347-7803366 None:intergenic 10.0%
!! AAATTGAATGTAAAAATTGT+AGG - chr2_3:7798478-7798497 Msa0275650:CDS 15.0%
!!! AAACTTTTCATATCATAAAT+TGG + chr2_3:7798886-7798905 None:intergenic 15.0%
!!! TTTAAAATTAGTGATTTGTT+GGG - chr2_3:7798956-7798975 Msa0275650:intron 15.0%
!!! TGATTGATTTTTAATGAATT+TGG - chr2_3:7799059-7799078 Msa0275650:intron 15.0%
!!! TTAAAAATCAATCAAAGTTT+TGG + chr2_3:7799134-7799153 None:intergenic 15.0%
!!! TTTATTTGATAACACATTTT+TGG - chr2_3:7799857-7799876 Msa0275650:CDS 15.0%
!!! TTATTTGATAACACATTTTT+GGG - chr2_3:7799858-7799877 Msa0275650:CDS 15.0%
!!! TGTTTGCAAATTTTATTTTA+TGG - chr2_3:7800449-7800468 Msa0275650:five_prime_UTR 15.0%
!!! ATATTGAAAATTTTTCTTTG+TGG - chr2_3:7800823-7800842 Msa0275650:five_prime_UTR 15.0%
!!! TATTGAAAATTTTTCTTTGT+GGG - chr2_3:7800824-7800843 Msa0275650:five_prime_UTR 15.0%
!! ATTATAATCTAAAAACTGTA+TGG + chr2_3:7801401-7801420 None:intergenic 15.0%
!!! CAGTTTTTAGATTATAATTT+AGG - chr2_3:7801403-7801422 Msa0275650:intron 15.0%
!!! TTTTTAGATTATAATTTAGG+TGG - chr2_3:7801406-7801425 Msa0275650:intron 15.0%
!! ATTAGAACAATATAATAAGT+AGG - chr2_3:7801990-7802009 Msa0275650:intron 15.0%
!! TTAATTAATCATACCATTTA+TGG + chr2_3:7802415-7802434 None:intergenic 15.0%
!! TATGATTAATTAAAATGCTA+AGG - chr2_3:7802422-7802441 Msa0275650:intron 15.0%
!! CAAAATCAATTATATTACAT+AGG + chr2_3:7802568-7802587 None:intergenic 15.0%
!!! CTATGTAATATAATTGATTT+TGG - chr2_3:7802566-7802585 Msa0275650:intron 15.0%
!! AAGTTCTCAAAATTATATTA+AGG - chr2_3:7802767-7802786 Msa0275650:intron 15.0%
!!! TTATTAGTTATTGCTATTTT+TGG - chr2_3:7803583-7803602 Msa0275650:five_prime_UTR 15.0%
!!! ATTCTGATTTTTCAATTTTT+TGG - chr2_3:7803642-7803661 Msa0275650:intron 15.0%
!!! TTCTGATTTTTCAATTTTTT+GGG - chr2_3:7803643-7803662 Msa0275650:intron 15.0%
!! AAAGAAATATATGTAAACAA+TGG + chr2_3:7803877-7803896 None:intergenic 15.0%
!!! TTTATTTTTAAGCTTCATAA+AGG - chr2_3:7804074-7804093 Msa0275650:five_prime_UTR 15.0%
!! ATTTAATTGATAGATTGTGT+AGG - chr2_3:7798250-7798269 Msa0275650:intron 20.0%
!! ATGTTATTGTATAGATAAAC+CGG + chr2_3:7798687-7798706 None:intergenic 20.0%
!!! CAGCTATAAATAATTTTGTA+TGG - chr2_3:7798843-7798862 Msa0275650:intron 20.0%
!!! TATGAAAAGTTTTTTCTTTG+TGG - chr2_3:7798894-7798913 Msa0275650:intron 20.0%
!!! ATGAAAAGTTTTTTCTTTGT+GGG - chr2_3:7798895-7798914 Msa0275650:intron 20.0%
!!! GTTTAAAATTAGTGATTTGT+TGG - chr2_3:7798955-7798974 Msa0275650:intron 20.0%
!!! GTTGATGAATCTAATTTTTT+TGG - chr2_3:7799081-7799100 Msa0275650:intron 20.0%
!!! TGATTGATTTTTAATGACAT+TGG - chr2_3:7799140-7799159 Msa0275650:intron 20.0%
!! ATATCATTCATACAGTTATA+CGG - chr2_3:7799207-7799226 Msa0275650:intron 20.0%
!! AGTACTTAGATCATAATTAA+TGG + chr2_3:7799312-7799331 None:intergenic 20.0%
!!! ATTTTGCTAAAAAGATTTCT+TGG - chr2_3:7799397-7799416 Msa0275650:intron 20.0%
!!! TTTGAAAAAACGACTATTTT+TGG - chr2_3:7799650-7799669 Msa0275650:intron 20.0%
!!! ATCTGAAAATAAGTTTGTTT+TGG + chr2_3:7799942-7799961 None:intergenic 20.0%
!!! TGTGTGAATTTGAATTTTTT+TGG - chr2_3:7800524-7800543 Msa0275650:five_prime_UTR 20.0%
!!! GTGTGAATTTGAATTTTTTT+GGG - chr2_3:7800525-7800544 Msa0275650:five_prime_UTR 20.0%
!! TACCTTCAATAAGAATTATA+AGG - chr2_3:7800737-7800756 Msa0275650:five_prime_UTR 20.0%
!!! TTGCTTTTTATAATCTATTC+AGG - chr2_3:7800780-7800799 Msa0275650:five_prime_UTR 20.0%
!!! TTTTCAATATCATAAATTCG+TGG + chr2_3:7800813-7800832 None:intergenic 20.0%
!!! TGATATTTTAAACTGATAGA+TGG - chr2_3:7801136-7801155 Msa0275650:five_prime_UTR 20.0%
!!! GCATCAATATTTAACTTAAT+TGG + chr2_3:7801376-7801395 None:intergenic 20.0%
!!! TTTGTATTTTCAACTTTTAG+TGG - chr2_3:7801627-7801646 Msa0275650:intron 20.0%
!!! TTTAAAACTTAGTAAAACCA+AGG + chr2_3:7801665-7801684 None:intergenic 20.0%
!!! TTGGTTTTACTAAGTTTTAA+AGG - chr2_3:7801664-7801683 Msa0275650:intron 20.0%
!!! TGGTTTTACTAAGTTTTAAA+GGG - chr2_3:7801665-7801684 Msa0275650:intron 20.0%
!! AACAAAATCAAACAACTAAA+TGG + chr2_3:7801832-7801851 None:intergenic 20.0%
!! TTATCAAACTATATAGTTGT+TGG - chr2_3:7802046-7802065 Msa0275650:intron 20.0%
!!! AATATATTTTTTGCAGATTG+TGG - chr2_3:7802688-7802707 Msa0275650:intron 20.0%
!!! AATTTTGAGAACTTGTTTTA+AGG + chr2_3:7802761-7802780 None:intergenic 20.0%
!!! ATGGTTGGTTAAATTTTATT+TGG - chr2_3:7802961-7802980 Msa0275650:intron 20.0%
!!! ATTTGAGGCAAAAATAAATT+GGG + chr2_3:7803211-7803230 None:intergenic 20.0%
!!! TCTAGCATGTAAATTAATTT+TGG - chr2_3:7803290-7803309 Msa0275650:intron 20.0%
!! AAGAAAACAAAAAAAAGAGT+TGG + chr2_3:7803438-7803457 None:intergenic 20.0%
!! AACATAAATAATTCTAGTCT+AGG + chr2_3:7803554-7803573 None:intergenic 20.0%
!!! CAATACTATTTTGTAATACT+TGG - chr2_3:7803770-7803789 Msa0275650:intron 20.0%
!!! CTAATACTAAAGTTGATTTT+TGG - chr2_3:7803910-7803929 Msa0275650:intron 20.0%
!!! ATACATAATGTTGTTGTTAT+TGG - chr2_3:7803943-7803962 Msa0275650:intron 20.0%
! AAGAAATTGGTGAAATTTGA+TGG + chr2_3:7798053-7798072 None:intergenic 25.0%
! TACAAAATCATATTTGCATG+TGG + chr2_3:7798085-7798104 None:intergenic 25.0%
!! ACTTGTTAGATCATTAGATT+AGG + chr2_3:7798116-7798135 None:intergenic 25.0%
!!! TACTGATTTTTTTTTTCTCC+AGG - chr2_3:7798389-7798408 Msa0275650:intron 25.0%
! TATGATAATTTCATCCCATA+AGG - chr2_3:7798431-7798450 Msa0275650:intron 25.0%
! TTACATAGAACATACCTTAT+GGG + chr2_3:7798448-7798467 None:intergenic 25.0%
! TTTACATAGAACATACCTTA+TGG + chr2_3:7798449-7798468 None:intergenic 25.0%
! GGTTTATCTATACAATAACA+TGG - chr2_3:7798686-7798705 Msa0275650:intron 25.0%
!!! TGGTTTTAGCATAAATTTTC+AGG - chr2_3:7798706-7798725 Msa0275650:intron 25.0%
!!! TTTTAGCATAAATTTTCAGG+AGG - chr2_3:7798709-7798728 Msa0275650:intron 25.0%
!!! TTTTTAATGACATTGGTTGA+TGG - chr2_3:7799147-7799166 Msa0275650:intron 25.0%
! TTGTATAATTGTTCTGCAAA+AGG + chr2_3:7799258-7799277 None:intergenic 25.0%
! TTTGCAGAACAATTATACAA+TGG - chr2_3:7799258-7799277 Msa0275650:intron 25.0%
! AATGGATGCATACAAATTAA+TGG + chr2_3:7799294-7799313 None:intergenic 25.0%
! TATTGTTTGTGCTATGAATT+AGG - chr2_3:7799341-7799360 Msa0275650:intron 25.0%
! ATACTATAGTATGAGTAGAT+TGG + chr2_3:7799448-7799467 None:intergenic 25.0%
! ATATACACATTGCAAAAAGA+TGG + chr2_3:7799788-7799807 None:intergenic 25.0%
! GATCATTTAATTGTACAATC+TGG + chr2_3:7799890-7799909 None:intergenic 25.0%
! AAAATTATTTGGTCTATTCG+TGG - chr2_3:7800078-7800097 Msa0275650:five_prime_UTR 25.0%
! CTTCAAAAAATCTTGACATA+TGG + chr2_3:7800225-7800244 None:intergenic 25.0%
!! AACTATCTAAAGTTCTATCA+AGG - chr2_3:7800353-7800372 Msa0275650:five_prime_UTR 25.0%
!!! GCAAATTTTATTTTATGGTG+AGG - chr2_3:7800454-7800473 Msa0275650:five_prime_UTR 25.0%
! TTGATTATCATTCAATTACC+TGG + chr2_3:7800642-7800661 None:intergenic 25.0%
! GTAATTGAATGATAATCAAC+TGG - chr2_3:7800643-7800662 Msa0275650:five_prime_UTR 25.0%
! CACCTTATAATTCTTATTGA+AGG + chr2_3:7800742-7800761 None:intergenic 25.0%
!!! ATGAGATAAAGATTTTAGAG+AGG - chr2_3:7801164-7801183 Msa0275650:five_prime_UTR 25.0%
! TATATAGAACTAGCAAGATT+AGG - chr2_3:7801472-7801491 Msa0275650:five_prime_UTR 25.0%
! ACATTATAGGAGAATTTAAG+AGG - chr2_3:7801520-7801539 Msa0275650:five_prime_UTR 25.0%
! ATATTTATGATAGCCATGTA+TGG - chr2_3:7801579-7801598 Msa0275650:intron 25.0%
!!! GGTTTTACTAAGTTTTAAAG+GGG - chr2_3:7801666-7801685 Msa0275650:intron 25.0%
! TACTTAGAGATAAAGATGAA+TGG - chr2_3:7801895-7801914 Msa0275650:intron 25.0%
! AGAACAATATAATAAGTAGG+TGG - chr2_3:7801993-7802012 Msa0275650:intron 25.0%
! TACAAACATGTCTATTGTAT+AGG - chr2_3:7802085-7802104 Msa0275650:intron 25.0%
! AGTTCATTTAAATGAAATGC+AGG + chr2_3:7802189-7802208 None:intergenic 25.0%
!!! GATATGTTTTTGAGTGTAAA+AGG - chr2_3:7802211-7802230 Msa0275650:intron 25.0%
! TTCATTCTTTACCATGTTAA+AGG - chr2_3:7802461-7802480 Msa0275650:intron 25.0%
! TATTTCTTGTTCCTTTAACA+TGG + chr2_3:7802475-7802494 None:intergenic 25.0%
! ATATCAAAATCACAGCATTA+TGG + chr2_3:7802508-7802527 None:intergenic 25.0%
! TTTCATTTCCTTAAATTGCA+TGG - chr2_3:7802803-7802822 Msa0275650:intron 25.0%
! ATAAGACCTATAATGTTGTA+AGG - chr2_3:7802906-7802925 Msa0275650:intron 25.0%
!!! AAATTTTATTTGGTCCTTAC+AGG - chr2_3:7802971-7802990 Msa0275650:intron 25.0%
!! TTTGAGGCAAAAATAAATTG+GGG + chr2_3:7803210-7803229 None:intergenic 25.0%
!! CATTTGAGGCAAAAATAAAT+TGG + chr2_3:7803212-7803231 None:intergenic 25.0%
! CATGCTAGAGAATAAAAAAT+TGG + chr2_3:7803279-7803298 None:intergenic 25.0%
! TATCTTCCTATGTAGATATT+TGG - chr2_3:7803690-7803709 Msa0275650:intron 25.0%
! CTTATTCCAAATATCTACAT+AGG + chr2_3:7803699-7803718 None:intergenic 25.0%
!! CTATGTAGATATTTGGAATA+AGG - chr2_3:7803697-7803716 Msa0275650:intron 25.0%
!! TAGATATTTGGAATAAGGTA+TGG - chr2_3:7803702-7803721 Msa0275650:intron 25.0%
!! AGATATTTGGAATAAGGTAT+GGG - chr2_3:7803703-7803722 Msa0275650:intron 25.0%
!!! TCTGTTTTTTTAGAGAGAGA+AGG + chr2_3:7797968-7797987 None:intergenic 30.0%
ATTGGTGAAATTTGATGGAA+TGG + chr2_3:7798048-7798067 None:intergenic 30.0%
ACCATAAATCAGAATTGAGT+GGG + chr2_3:7798156-7798175 None:intergenic 30.0%
!!! TATGGTGAGTTTTGTTTGAT+TGG - chr2_3:7798170-7798189 Msa0275650:intron 30.0%
!!! ATGGTGAGTTTTGTTTGATT+GGG - chr2_3:7798171-7798190 Msa0275650:intron 30.0%
!! ATTAAAATCTAGAAGTGTCC+TGG + chr2_3:7798410-7798429 None:intergenic 30.0%
AAATTAGTCCAAAATGCAAG+TGG + chr2_3:7798644-7798663 None:intergenic 30.0%
! TGTATGACTTTTGTATCTAC+CGG - chr2_3:7798665-7798684 Msa0275650:intron 30.0%
TCTAGCAGAATGATAATTGA+AGG - chr2_3:7798775-7798794 Msa0275650:intron 30.0%
!! GATAAGTTTTATGTGTTTGC+TGG - chr2_3:7798928-7798947 Msa0275650:intron 30.0%
!! TCACTGTCATCTAAAGTTTT+AGG + chr2_3:7799175-7799194 None:intergenic 30.0%
!! TACAAATTAATGGACTTCCA+GGG + chr2_3:7799284-7799303 None:intergenic 30.0%
!! ATACAAATTAATGGACTTCC+AGG + chr2_3:7799285-7799304 None:intergenic 30.0%
!! ATTTGAAACAATGTTTTGCC+AGG + chr2_3:7799495-7799514 None:intergenic 30.0%
ACGTATAGATACATTATGCA+AGG - chr2_3:7799696-7799715 Msa0275650:intron 30.0%
AAGAGTTCAAGTCTACTTAT+AGG - chr2_3:7799758-7799777 Msa0275650:intron 30.0%
TAAATGATCTCAAAGTCAGT+AGG - chr2_3:7799829-7799848 Msa0275650:CDS 30.0%
TCAGATCATTTATAACCCAA+AGG - chr2_3:7799956-7799975 Msa0275650:intron 30.0%
CAGATCATTTATAACCCAAA+GGG - chr2_3:7799957-7799976 Msa0275650:intron 30.0%
TATTGTGAAATCAACCCTTT+GGG + chr2_3:7799974-7799993 None:intergenic 30.0%
! GAAGACTTTTACACAGAAAA+TGG + chr2_3:7800000-7800019 None:intergenic 30.0%
! GAGAATCTGCATTGATATTA+TGG + chr2_3:7800028-7800047 None:intergenic 30.0%
AAGATTCTTGAGAACATTGT+AGG + chr2_3:7800128-7800147 None:intergenic 30.0%
AATGCATCTAATAAGTGCTA+AGG + chr2_3:7800403-7800422 None:intergenic 30.0%
TAAGATACTGATGATACAGA+TGG + chr2_3:7800586-7800605 None:intergenic 30.0%
! TTACCAAGCTTAATTTTTCC+AGG - chr2_3:7800621-7800640 Msa0275650:five_prime_UTR 30.0%
TTACCTGGAAAAATTAAGCT+TGG + chr2_3:7800627-7800646 None:intergenic 30.0%
ATTGAATGATAATCAACTGG+TGG - chr2_3:7800646-7800665 Msa0275650:five_prime_UTR 30.0%
TTGAATGATAATCAACTGGT+GGG - chr2_3:7800647-7800666 Msa0275650:five_prime_UTR 30.0%
AACAGATGACTATTTGTATG+AGG - chr2_3:7800850-7800869 Msa0275650:five_prime_UTR 30.0%
AAACCATATACAGATCACAT+TGG + chr2_3:7800919-7800938 None:intergenic 30.0%
!! AAAGATTTTAGAGAGGAAAC+AGG - chr2_3:7801171-7801190 Msa0275650:five_prime_UTR 30.0%
CCTATAATGTAGACATTGTA+TGG + chr2_3:7801510-7801529 None:intergenic 30.0%
CCATACAATGTCTACATTAT+AGG - chr2_3:7801507-7801526 Msa0275650:five_prime_UTR 30.0%
GTAATGTCTTGAATCTTCAT+TGG - chr2_3:7801869-7801888 Msa0275650:intron 30.0%
! GTTTGTAGAAAATAGCTTTG+TGG + chr2_3:7802072-7802091 None:intergenic 30.0%
CATTTAAATGAAATGCAGGA+AGG + chr2_3:7802185-7802204 None:intergenic 30.0%
TGTTTACAAGGACAATAACA+TGG - chr2_3:7802386-7802405 Msa0275650:intron 30.0%
AATAACATGGAAGCCATAAA+TGG - chr2_3:7802399-7802418 Msa0275650:intron 30.0%
GATTCAAAGACTGAAATAGA+AGG + chr2_3:7802541-7802560 None:intergenic 30.0%
ATTCTGTGATTGTTCTGTTT+CGG - chr2_3:7802711-7802730 Msa0275650:intron 30.0%
AGGAAATGAAAACTGAGTTA+GGG + chr2_3:7802794-7802813 None:intergenic 30.0%
AAGGAAATGAAAACTGAGTT+AGG + chr2_3:7802795-7802814 None:intergenic 30.0%
CACTAACCTTACAACATTAT+AGG + chr2_3:7802915-7802934 None:intergenic 30.0%
TTCATAATCATCTTCCTGTA+AGG + chr2_3:7802988-7803007 None:intergenic 30.0%
AAGCTCTCAAAAGATAACTA+TGG - chr2_3:7803023-7803042 Msa0275650:intron 30.0%
TCTCAAAAGATAACTATGGT+TGG - chr2_3:7803027-7803046 Msa0275650:intron 30.0%
!!! TAACACAGGTTTTGAATTCT+TGG - chr2_3:7803063-7803082 Msa0275650:intron 30.0%
! ATTATTTTCCAGTGAAGAAC+AGG + chr2_3:7803093-7803112 None:intergenic 30.0%
AAATGTGATGAGGCAAAAAT+TGG + chr2_3:7803181-7803200 None:intergenic 30.0%
TTGAGGCAAAAATAAATTGG+GGG + chr2_3:7803209-7803228 None:intergenic 30.0%
GTTCCTAGAAGAAAAGAATA+CGG + chr2_3:7803255-7803274 None:intergenic 30.0%
GGGACAAATAGAAATAGAAA+GGG + chr2_3:7803389-7803408 None:intergenic 30.0%
AGGGACAAATAGAAATAGAA+AGG + chr2_3:7803390-7803409 None:intergenic 30.0%
TAAGAACAAAAGTGAGTGAA+GGG + chr2_3:7803409-7803428 None:intergenic 30.0%
TCACTAAGAAAATTGTAAGC+AGG - chr2_3:7803496-7803515 Msa0275650:intron 30.0%
CACTAAGAAAATTGTAAGCA+GGG - chr2_3:7803497-7803516 Msa0275650:intron 30.0%
AATCTATATATCTCCCTAGT+CGG + chr2_3:7803524-7803543 None:intergenic 30.0%
!! TTGGTGTTGAATATTGACTT+TGG - chr2_3:7803602-7803621 Msa0275650:five_prime_UTR 30.0%
GTAAACAATGGTTATAGCAA+TGG + chr2_3:7803865-7803884 None:intergenic 30.0%
!!! CACATTGCTTTATTTTCCAA+AGG + chr2_3:7804120-7804139 None:intergenic 30.0%
! CTTTGGAAAATAAAGCAATG+TGG - chr2_3:7804118-7804137 Msa0275650:five_prime_UTR 30.0%
TCATATTTGCATGTGGAGTT+TGG + chr2_3:7798078-7798097 None:intergenic 35.0%
ACCCACTCAATTCTGATTTA+TGG - chr2_3:7798152-7798171 Msa0275650:intron 35.0%
CACCATAAATCAGAATTGAG+TGG + chr2_3:7798157-7798176 None:intergenic 35.0%
TAGATTGTGTAGGTATGAAG+AGG - chr2_3:7798260-7798279 Msa0275650:intron 35.0%
AGATTGTGTAGGTATGAAGA+GGG - chr2_3:7798261-7798280 Msa0275650:intron 35.0%
TGCACAGTGAAAAAGAAAAG+AGG - chr2_3:7798564-7798583 Msa0275650:intron 35.0%
! TGTTATGACCACTTGCATTT+TGG - chr2_3:7798633-7798652 Msa0275650:intron 35.0%
!! ATAAATTTTCAGGAGGAGAG+AGG - chr2_3:7798716-7798735 Msa0275650:intron 35.0%
CTTTGCGTAGAAATGTTTGT+TGG - chr2_3:7798998-7799017 Msa0275650:intron 35.0%
TGTTTGTGCTATGAATTAGG+TGG - chr2_3:7799344-7799363 Msa0275650:intron 35.0%
!! AAATGAATGTTCTGAGACAC+TGG + chr2_3:7799472-7799491 None:intergenic 35.0%
AAACCAGTGTTATAGCATAG+CGG - chr2_3:7799625-7799644 Msa0275650:intron 35.0%
CTATTGTGAAATCAACCCTT+TGG + chr2_3:7799975-7799994 None:intergenic 35.0%
TGTTCTCAAGAATCTTAGTG+AGG - chr2_3:7800132-7800151 Msa0275650:five_prime_UTR 35.0%
!!! AGAGTGGTTTTATGATGCAT+TGG - chr2_3:7800161-7800180 Msa0275650:five_prime_UTR 35.0%
! AGAGTCTACTTTGAAGAGTA+AGG - chr2_3:7800248-7800267 Msa0275650:five_prime_UTR 35.0%
GAAGAGTAAGGTTAAGAACA+TGG - chr2_3:7800260-7800279 Msa0275650:five_prime_UTR 35.0%
GTGAAATTCCGAATGAGTTT+GGG - chr2_3:7800669-7800688 Msa0275650:five_prime_UTR 35.0%
CATTGGCAAATGTCACAAAA+AGG + chr2_3:7800902-7800921 None:intergenic 35.0%
TTGCCAATGTGATCTGTATA+TGG - chr2_3:7800913-7800932 Msa0275650:five_prime_UTR 35.0%
CTGTATATGGTTTCCAATTG+CGG - chr2_3:7800926-7800945 Msa0275650:five_prime_UTR 35.0%
TGTATATGGTTTCCAATTGC+GGG - chr2_3:7800927-7800946 Msa0275650:five_prime_UTR 35.0%
AGTGGTCAAAATCAATACCT+TGG - chr2_3:7801645-7801664 Msa0275650:intron 35.0%
!!! TAAGTTTTAAAGGGGCCAAA+TGG - chr2_3:7801674-7801693 Msa0275650:intron 35.0%
ACAAGTAAAACAAGTGATGC+AGG - chr2_3:7801710-7801729 Msa0275650:intron 35.0%
CAAGTAAAACAAGTGATGCA+GGG - chr2_3:7801711-7801730 Msa0275650:intron 35.0%
AAGTAAAACAAGTGATGCAG+GGG - chr2_3:7801712-7801731 Msa0275650:intron 35.0%
! TGTCACTCAATCTGTTTTCA+TGG - chr2_3:7801745-7801764 Msa0275650:intron 35.0%
!!! ATGGTTTTATCCACTGTTGT+TGG - chr2_3:7801764-7801783 Msa0275650:intron 35.0%
! TTTGTTACTCATTGCTGACT+AGG - chr2_3:7801846-7801865 Msa0275650:intron 35.0%
! TTGTTACTCATTGCTGACTA+GGG - chr2_3:7801847-7801866 Msa0275650:intron 35.0%
CATGTCTATTGTATAGGCTT+TGG - chr2_3:7802091-7802110 Msa0275650:intron 35.0%
GTGTAAAAGGTTGTCACAAA+TGG - chr2_3:7802224-7802243 Msa0275650:intron 35.0%
ATTGTCCTTGTAAACACCTA+GGG + chr2_3:7802382-7802401 None:intergenic 35.0%
TATTGTCCTTGTAAACACCT+AGG + chr2_3:7802383-7802402 None:intergenic 35.0%
TTCTGTGATTGTTCTGTTTC+GGG - chr2_3:7802712-7802731 Msa0275650:intron 35.0%
TTGAGAGTCCATGCAATTTA+AGG + chr2_3:7802814-7802833 None:intergenic 35.0%
! TAGTGTTGAAGACATGATAG+CGG - chr2_3:7802930-7802949 Msa0275650:intron 35.0%
AGATGATTATGAAGCTACAG+TGG - chr2_3:7802995-7803014 Msa0275650:intron 35.0%
CTCTGCAAACTTTAGTATAG+AGG - chr2_3:7803113-7803132 Msa0275650:intron 35.0%
! CCTCGAAATTTAAAGTTCCA+AGG + chr2_3:7803154-7803173 None:intergenic 35.0%
CCTTGGAACTTTAAATTTCG+AGG - chr2_3:7803151-7803170 Msa0275650:intron 35.0%
AAAAGAATACGGCAGATGAA+GGG + chr2_3:7803244-7803263 None:intergenic 35.0%
TTGGAACAAGATATCTCCAA+TGG - chr2_3:7803309-7803328 Msa0275650:intron 35.0%
GTAAGAACAAAAGTGAGTGA+AGG + chr2_3:7803410-7803429 None:intergenic 35.0%
! ATTAGAGCTCTGCTTTGAAT+TGG - chr2_3:7803986-7804005 Msa0275650:intron 35.0%
ATAAAGGTCTGCAGACAAAA+AGG - chr2_3:7804090-7804109 Msa0275650:five_prime_UTR 35.0%
GCTTTCACATCATTTCCTTA+TGG - chr2_3:7804194-7804213 Msa0275650:five_prime_UTR 35.0%
TCCTTATGGAAGTAATCTTG+AGG - chr2_3:7804208-7804227 Msa0275650:five_prime_UTR 35.0%
ACCTCAAGATTACTTCCATA+AGG + chr2_3:7804212-7804231 None:intergenic 35.0%
ATGGAAGTAATCTTGAGGTA+TGG - chr2_3:7804213-7804232 Msa0275650:five_prime_UTR 35.0%
! GTGGAGTTTGGTGAAGAAAT+TGG + chr2_3:7798066-7798085 None:intergenic 40.0%
CAGATTTCTGAGTTGCAAGT+AGG - chr2_3:7798600-7798619 Msa0275650:intron 40.0%
!! TTTTTCTTTGTGGGCTGAAC+AGG - chr2_3:7798904-7798923 Msa0275650:intron 40.0%
!! GTTTTATGTGTTTGCTGGTG+AGG - chr2_3:7798933-7798952 Msa0275650:intron 40.0%
GAACAATTATACAATGGCCC+TGG - chr2_3:7799264-7799283 Msa0275650:intron 40.0%
GTGGTAAGCTAATCAACATG+AGG - chr2_3:7799363-7799382 Msa0275650:intron 40.0%
GTCTCAGAACATTCATTTCC+TGG - chr2_3:7799474-7799493 Msa0275650:intron 40.0%
AACCAGTGTTATAGCATAGC+GGG - chr2_3:7799626-7799645 Msa0275650:intron 40.0%
CTCAAAGTCAGTAGGTTAGA+AGG - chr2_3:7799909-7799928 Msa0275650:intron 40.0%
AAGTCAGTAGGTTAGAAGGA+AGG - chr2_3:7799913-7799932 Msa0275650:intron 40.0%
! CTTAGTGAGGTATTACAGAG+TGG - chr2_3:7800145-7800164 Msa0275650:five_prime_UTR 40.0%
AGGTTAAGAACATGGTCAAG+AGG - chr2_3:7800268-7800287 Msa0275650:five_prime_UTR 40.0%
CATGTAGATCACATGGGTTT+GGG + chr2_3:7800380-7800399 None:intergenic 40.0%
CTAAGGCATGTAGATCACAT+GGG + chr2_3:7800386-7800405 None:intergenic 40.0%
GGTGAAATTCCGAATGAGTT+TGG - chr2_3:7800668-7800687 Msa0275650:five_prime_UTR 40.0%
TCAAGCTTCCCAAACTCATT+CGG + chr2_3:7800680-7800699 None:intergenic 40.0%
ATCACACTGCAATTGCAACT+TGG + chr2_3:7800983-7801002 None:intergenic 40.0%
!! AAAATTAAGTTGACGCCGCA+AGG - chr2_3:7801251-7801270 Msa0275650:five_prime_UTR 40.0%
TTGCGATATTGCAGCTATTG+CGG + chr2_3:7801290-7801309 None:intergenic 40.0%
CAATAGCTGCAATATCGCAA+AGG - chr2_3:7801290-7801309 Msa0275650:five_prime_UTR 40.0%
!!! ATGGTTTTAAAATGCAGCCG+CGG + chr2_3:7801328-7801347 None:intergenic 40.0%
AAACCATGGTTCTTTGTGCT+TGG - chr2_3:7801341-7801360 Msa0275650:intron 40.0%
GCACTGCAAATTTCCATACA+TGG + chr2_3:7801595-7801614 None:intergenic 40.0%
ATGGAAATTTGCAGTGCTGT+TGG - chr2_3:7801598-7801617 Msa0275650:intron 40.0%
!! TTTTAAAGGGGCCAAATGGT+TGG - chr2_3:7801678-7801697 Msa0275650:intron 40.0%
GTAAAACCAGTCCAACCATT+TGG + chr2_3:7801692-7801711 None:intergenic 40.0%
! GTCTATTGTATAGGCTTTGG+AGG - chr2_3:7802094-7802113 Msa0275650:intron 40.0%
GCTAACATCTGAGTTTCAGA+TGG + chr2_3:7802122-7802141 None:intergenic 40.0%
GTGGTTAACTCTTCAGTTGA+AGG + chr2_3:7802250-7802269 None:intergenic 40.0%
CCTGCAAAATGCATATTCAG+TGG + chr2_3:7802269-7802288 None:intergenic 40.0%
! CCACTGAATATGCATTTTGC+AGG - chr2_3:7802266-7802285 Msa0275650:intron 40.0%
! AGTAGTCAGAGGTTTTCTGT+TGG - chr2_3:7802291-7802310 Msa0275650:intron 40.0%
! GTAGTCAGAGGTTTTCTGTT+GGG - chr2_3:7802292-7802311 Msa0275650:intron 40.0%
!! ACAGAAAGAAGCATCTTTCC+AGG + chr2_3:7802348-7802367 None:intergenic 40.0%
AAGATGCTTCTTTCTGTCCA+TGG - chr2_3:7802351-7802370 Msa0275650:intron 40.0%
TTGTCCTTGTAAACACCTAG+GGG + chr2_3:7802381-7802400 None:intergenic 40.0%
CACATCACATGATATTGCAG+CGG + chr2_3:7802656-7802675 None:intergenic 40.0%
AAATTGCATGGACTCTCAAC+AGG - chr2_3:7802815-7802834 Msa0275650:intron 40.0%
CTCAACAGGTGGAATGATTT+AGG - chr2_3:7802829-7802848 Msa0275650:intron 40.0%
!! AAGACATGATAGCGGAACAT+TGG - chr2_3:7802938-7802957 Msa0275650:intron 40.0%
GGCTGAATATAAGCTAACCT+TGG - chr2_3:7803134-7803153 Msa0275650:intron 40.0%
AAAGAATACGGCAGATGAAG+GGG + chr2_3:7803243-7803262 None:intergenic 40.0%
GAAAAGAATACGGCAGATGA+AGG + chr2_3:7803245-7803264 None:intergenic 40.0%
! CTGCCGTATTCTTTTCTTCT+AGG - chr2_3:7803249-7803268 Msa0275650:intron 40.0%
! TTGGAAAGCACAATAGCCAT+TGG + chr2_3:7803328-7803347 None:intergenic 40.0%
GACGCATCTAAACTGAAATC+TGG - chr2_3:7803665-7803684 Msa0275650:intron 40.0%
CAGACAAAAAGGTCTACCTT+TGG - chr2_3:7804101-7804120 Msa0275650:five_prime_UTR 40.0%
TGTGGTTGAGAGAAGTAGAT+TGG - chr2_3:7804136-7804155 Msa0275650:five_prime_UTR 40.0%
GATGGAATGGAGAGAAGAGA+GGG + chr2_3:7798035-7798054 None:intergenic 45.0%
TGATGGAATGGAGAGAAGAG+AGG + chr2_3:7798036-7798055 None:intergenic 45.0%
GCAACTCAGAAATCTGTCAC+TGG + chr2_3:7798596-7798615 None:intergenic 45.0%
ACTAGAGTGGGAATTGGCAA+GGG - chr2_3:7798741-7798760 Msa0275650:intron 45.0%
ATCCCGCTATGCTATAACAC+TGG + chr2_3:7799631-7799650 None:intergenic 45.0%
GCATGTAGATCACATGGGTT+TGG + chr2_3:7800381-7800400 None:intergenic 45.0%
GCTAAGGCATGTAGATCACA+TGG + chr2_3:7800387-7800406 None:intergenic 45.0%
!! CACAAGTAGCTCTAGATGCA+GGG + chr2_3:7800554-7800573 None:intergenic 45.0%
!! TCACAAGTAGCTCTAGATGC+AGG + chr2_3:7800555-7800574 None:intergenic 45.0%
CGTGATTACAGATAATGCCG+TGG + chr2_3:7800958-7800977 None:intergenic 45.0%
TTGGGTGCAGAAAACTACAG+AGG - chr2_3:7801043-7801062 Msa0275650:five_prime_UTR 45.0%
!!! GCGGCTGCATTTTAAAACCA+TGG - chr2_3:7801327-7801346 Msa0275650:intron 45.0%
ACACCAAGCACAAAGAACCA+TGG + chr2_3:7801347-7801366 None:intergenic 45.0%
! ATTTGCAGTGCTGTTGGTAG+TGG - chr2_3:7801604-7801623 Msa0275650:intron 45.0%
GAAAGCTACACCAACAACAG+TGG + chr2_3:7801777-7801796 None:intergenic 45.0%
CAGATGTTAGCGATGCAAGA+AGG - chr2_3:7802131-7802150 Msa0275650:intron 45.0%
GAAGGAGAGATACTTACACC+AGG + chr2_3:7802167-7802186 None:intergenic 45.0%
! TTTTGCAGGTGAGTAGTCAG+AGG - chr2_3:7802280-7802299 Msa0275650:intron 45.0%
GGATGACACCCAAAACACTT+CGG - chr2_3:7802313-7802332 Msa0275650:intron 45.0%
GATGACACCCAAAACACTTC+GGG - chr2_3:7802314-7802333 Msa0275650:intron 45.0%
!! TTGGGAACCCGAAGTGTTTT+GGG + chr2_3:7802324-7802343 None:intergenic 45.0%
!! AGAAGCATCTTTCCAGGCTT+GGG + chr2_3:7802342-7802361 None:intergenic 45.0%
!! AAGAAGCATCTTTCCAGGCT+TGG + chr2_3:7802343-7802362 None:intergenic 45.0%
ATCACCCCTAGGTGTTTACA+AGG - chr2_3:7802374-7802393 Msa0275650:intron 45.0%
TCACATGATATTGCAGCGGA+AGG + chr2_3:7802652-7802671 None:intergenic 45.0%
CGCTGCAATATCATGTGATG+TGG - chr2_3:7802654-7802673 Msa0275650:intron 45.0%
!! CATGATAGCGGAACATTGGA+TGG - chr2_3:7802942-7802961 Msa0275650:intron 45.0%
! ATAGCGGAACATTGGATGGT+TGG - chr2_3:7802946-7802965 Msa0275650:intron 45.0%
AAGGGGGAGTGAAACATTTG+AGG + chr2_3:7803226-7803245 None:intergenic 45.0%
AAGAATACGGCAGATGAAGG+GGG + chr2_3:7803242-7803261 None:intergenic 45.0%
ATGCAAATCTGCAGCGGATA+AGG + chr2_3:7803461-7803480 None:intergenic 45.0%
TCATGCATGCAAATCTGCAG+CGG + chr2_3:7803467-7803486 None:intergenic 45.0%
!!! ATTTACTATTATTTATTTTA+TGG + chr2_3:7801212-7801231 None:intergenic 5.0%
CGTGTGTTTGAGAGGAGAGA+GGG + chr2_3:7798006-7798025 None:intergenic 50.0%
CCTCTCTCCTCTCAAACACA+CGG - chr2_3:7798004-7798023 Msa0275650:CDS 50.0%
AGGAGAGAGGACACTAGAGT+GGG - chr2_3:7798729-7798748 Msa0275650:intron 50.0%
GAGGACACTAGAGTGGGAAT+TGG - chr2_3:7798735-7798754 Msa0275650:intron 50.0%
CACTAGAGTGGGAATTGGCA+AGG - chr2_3:7798740-7798759 Msa0275650:intron 50.0%
GGTGTGTATTGTCGTCCTTG+CGG + chr2_3:7801269-7801288 None:intergenic 50.0%
TTAAAATGCAGCCGCGGTTG+CGG + chr2_3:7801322-7801341 None:intergenic 50.0%
CAAGAAGGTCTTCTGACTCC+TGG - chr2_3:7802146-7802165 Msa0275650:intron 50.0%
!! CTTGGGAACCCGAAGTGTTT+TGG + chr2_3:7802325-7802344 None:intergenic 50.0%
AAACACCTAGGGGTGATCCA+TGG + chr2_3:7802371-7802390 None:intergenic 50.0%
TTGCATGGACTCTCAACAGG+TGG - chr2_3:7802818-7802837 Msa0275650:intron 50.0%
GTGACGAGCTCGATTAACAC+AGG - chr2_3:7803049-7803068 Msa0275650:intron 50.0%
TTGGTCGTCCTGTTCTTCAC+TGG - chr2_3:7803082-7803101 Msa0275650:intron 50.0%
GGGGGAGTGAAAATGTGATG+AGG + chr2_3:7803191-7803210 None:intergenic 50.0%
ATTGTAAGCAGGGACCGACT+AGG - chr2_3:7803507-7803526 Msa0275650:intron 50.0%
TTGTAAGCAGGGACCGACTA+GGG - chr2_3:7803508-7803527 Msa0275650:intron 50.0%
CCGTGTGTTTGAGAGGAGAG+AGG + chr2_3:7798007-7798026 None:intergenic 55.0%
GGTGAAGCCGTGTGTTTGAG+AGG + chr2_3:7798014-7798033 None:intergenic 55.0%
GAGGAGAGAGGACACTAGAG+TGG - chr2_3:7798728-7798747 Msa0275650:intron 55.0%
TGCACCCAATGCCCTCGTTA+CGG + chr2_3:7801032-7801051 None:intergenic 55.0%
AAGGGGCCAAATGGTTGGAC+TGG - chr2_3:7801683-7801702 Msa0275650:intron 55.0%
TCTGTCCATGGATCACCCCT+AGG - chr2_3:7802363-7802382 Msa0275650:intron 55.0%
! TCCAATTGCGGGTGCTGCCA+CGG - chr2_3:7800938-7800957 Msa0275650:five_prime_UTR 60.0%
AAACCGCAGCGCCGTAACGA+GGG - chr2_3:7801018-7801037 Msa0275650:five_prime_UTR 60.0%
!! AGCGCCGTAACGAGGGCATT+GGG - chr2_3:7801025-7801044 Msa0275650:five_prime_UTR 60.0%
! ACACTTCGGGTTCCCAAGCC+TGG - chr2_3:7802327-7802346 Msa0275650:intron 60.0%
GAAACCGCAGCGCCGTAACG+AGG - chr2_3:7801017-7801036 Msa0275650:five_prime_UTR 65.0%
ATGCCCTCGTTACGGCGCTG+CGG + chr2_3:7801024-7801043 None:intergenic 65.0%
! CAGCGCCGTAACGAGGGCAT+TGG - chr2_3:7801024-7801043 Msa0275650:five_prime_UTR 65.0%
AAAGGCAGCGACCGCAACCG+CGG - chr2_3:7801308-7801327 Msa0275650:five_prime_UTR 65.0%
GCCGTGGCAGCACCCGCAAT+TGG + chr2_3:7800942-7800961 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 7797937 7804248 7797937 ID=Msa0275650;Name=Msa0275650
chr2_3 mRNA 7797937 7804248 7797937 ID=Msa0275650-mRNA-1;Parent=Msa0275650;Name=Msa0275650-mRNA-1;_AED=0.21;_eAED=0.21;_QI=1825|0.87|0.77|1|0.37|0.44|9|0|132
chr2_3 exon 7797937 7798089 7797937 ID=Msa0275650-mRNA-1:exon:3577;Parent=Msa0275650-mRNA-1
chr2_3 exon 7798467 7798543 7798467 ID=Msa0275650-mRNA-1:exon:3576;Parent=Msa0275650-mRNA-1
chr2_3 exon 7799765 7799897 7799765 ID=Msa0275650-mRNA-1:exon:3575;Parent=Msa0275650-mRNA-1
chr2_3 exon 7800016 7801330 7800016 ID=Msa0275650-mRNA-1:exon:3574;Parent=Msa0275650-mRNA-1
chr2_3 exon 7801425 7801542 7801425 ID=Msa0275650-mRNA-1:exon:3573;Parent=Msa0275650-mRNA-1
chr2_3 exon 7803389 7803457 7803389 ID=Msa0275650-mRNA-1:exon:3572;Parent=Msa0275650-mRNA-1
chr2_3 exon 7803568 7803647 7803568 ID=Msa0275650-mRNA-1:exon:3571;Parent=Msa0275650-mRNA-1
chr2_3 exon 7803733 7803774 7803733 ID=Msa0275650-mRNA-1:exon:3570;Parent=Msa0275650-mRNA-1
chr2_3 exon 7804012 7804248 7804012 ID=Msa0275650-mRNA-1:exon:3569;Parent=Msa0275650-mRNA-1
chr2_3 five_prime_UTR 7804012 7804248 7804012 ID=Msa0275650-mRNA-1:five_prime_utr;Parent=Msa0275650-mRNA-1
chr2_3 five_prime_UTR 7803733 7803774 7803733 ID=Msa0275650-mRNA-1:five_prime_utr;Parent=Msa0275650-mRNA-1
chr2_3 five_prime_UTR 7803568 7803647 7803568 ID=Msa0275650-mRNA-1:five_prime_utr;Parent=Msa0275650-mRNA-1
chr2_3 five_prime_UTR 7803389 7803457 7803389 ID=Msa0275650-mRNA-1:five_prime_utr;Parent=Msa0275650-mRNA-1
chr2_3 five_prime_UTR 7801425 7801542 7801425 ID=Msa0275650-mRNA-1:five_prime_utr;Parent=Msa0275650-mRNA-1
chr2_3 five_prime_UTR 7800052 7801330 7800052 ID=Msa0275650-mRNA-1:five_prime_utr;Parent=Msa0275650-mRNA-1
chr2_3 CDS 7800016 7800051 7800016 ID=Msa0275650-mRNA-1:cds;Parent=Msa0275650-mRNA-1
chr2_3 CDS 7799765 7799897 7799765 ID=Msa0275650-mRNA-1:cds;Parent=Msa0275650-mRNA-1
chr2_3 CDS 7798467 7798543 7798467 ID=Msa0275650-mRNA-1:cds;Parent=Msa0275650-mRNA-1
chr2_3 CDS 7797937 7798089 7797937 ID=Msa0275650-mRNA-1:cds;Parent=Msa0275650-mRNA-1
Gene Sequence

>Msa0275650

ATGTTAGCGATGCAAGAAGGTCTTCTGACTCCTGGTGTGAGTAGTCAGAGGTTTTCTGTTGGGATGACACCCAAAACACTTCGGGTTCCCAAGCCTGGAAAGATGCTTCTTTCTGTCCATGGATCACCCCTAGGTGTTTACAAGGACAATAACATGGAAGCCATAAATGATTCTGATTTTTCAATTTTTTGGGACGCATCTAAACTGAAATCTGGTGTATCTTCCTATGTAGATATTTGGAATAAGGTCTGCAGACAAAAAGGTCTACCTTTGGAAAATAAAGCAATGTGGTTGAGAGAAGTAGATTGGCTTCTTTGTGTTTATGATCATATCGTTGAGTTAATGCTTTCACATCATTTCCTTATGGAAGTAATCTTGAGGTATGGTTCTCATCTATGA
Protein sequence

>Msa0275650

MLAMQEGLLTPGVSSQRFSVGMTPKTLRVPKPGKMLLSVHGSPLGVYKDNNMEAINDSDFSIFWDASKLKSGVSSYVDIWNKVCRQKGLPLENKAMWLREVDWLLCVYDHIVELMLSHHFLMEVILRYGSHL*