AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1009480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1009480 MtrunA17_Chr6g0459221 96.429 56 2 0 2 57 178 233 4.41e-33 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1009480 AT4G39630.2 68.966 58 17 1 1 57 160 217 3.40e-22 85.1
Msa1009480 AT4G39630.1 68.966 58 17 1 1 57 173 230 7.23e-22 84.7

Find 106 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAATTAATCATACCATTTA+TGG 0.077957 7_1:+10918365 None:intergenic
ACCCACTCAATTCTGATTTA+TGG 0.091337 7_1:-10922624 Msa1009480:intron
GCATCAAAATTTAACTTAAT+TGG 0.092519 7_1:+10919404 None:intergenic
TTCTGTGATTGTTCTGTTTC+GGG 0.170403 7_1:-10918065 Msa1009480:CDS
CTTGGGAACCCGAAGTGTTT+TGG 0.200607 7_1:+10918455 None:intergenic
AACAAAATCAAACAAATAAA+TGG 0.259645 7_1:+10918948 None:intergenic
CCATACAATGTCTACATTAT+AGG 0.287632 7_1:-10919270 Msa1009480:five_prime_UTR
ATTCTGTGATTGTTCTGTTT+CGG 0.299823 7_1:-10918066 Msa1009480:CDS
GGTGAAATTCCGAATGAGTT+TGG 0.326879 7_1:-10920109 Msa1009480:five_prime_UTR
AATAACATGGAAGCCATAAA+TGG 0.330124 7_1:-10918378 Msa1009480:intron
TTGCCAATGTGATCTGTATA+TGG 0.340719 7_1:-10919864 Msa1009480:five_prime_UTR
TACAAACATGTCTATTGTAT+AGG 0.349271 7_1:-10918692 Msa1009480:five_prime_UTR
TACCTTCAATAAGAATTATA+AGG 0.353760 7_1:-10920040 Msa1009480:five_prime_UTR
CATGTCTATTGTATAGGCTT+TGG 0.355751 7_1:-10918686 Msa1009480:five_prime_UTR
GTGGAGTTTGGTGAAGAAAT+TGG 0.359563 7_1:+10922713 None:intergenic
AAGAAATTGGTGAAATTTGA+TGG 0.360739 7_1:+10922726 None:intergenic
GTGAAATTCCGAATGAGTTT+GGG 0.372675 7_1:-10920108 Msa1009480:five_prime_UTR
CATTGGCAAATGTCACAAAA+AGG 0.373345 7_1:+10919878 None:intergenic
TTATCAAACTATATAGTTGT+TGG 0.387443 7_1:-10918731 Msa1009480:five_prime_UTR
CACCTTATAATTCTTATTGA+AGG 0.388241 7_1:+10920038 None:intergenic
TTACATAGAACATACCTTAT+GGG 0.397491 7_1:+10922332 None:intergenic
GTAATGTCTTGAATCTTCAT+TGG 0.410104 7_1:-10918908 Msa1009480:five_prime_UTR
CCTATAATGTAGACATTGTA+TGG 0.410759 7_1:+10919270 None:intergenic
TCTAGCAGAATGATAATTGA+AGG 0.420059 7_1:-10922002 Msa1009480:intron
TCATATTTGCATGTGGAGTT+TGG 0.421367 7_1:+10922701 None:intergenic
GAGATGCTTCTTTCTGTCCA+TGG 0.428796 7_1:-10918426 Msa1009480:CDS
AGCGCCGTAACGAGGGCATT+GGG 0.430026 7_1:-10919752 Msa1009480:five_prime_UTR
TCAAGCTTCCCAAACTCATT+CGG 0.430405 7_1:+10920100 None:intergenic
AGAAGCATCTCTCCAGGCTT+GGG 0.431925 7_1:+10918438 None:intergenic
TATATAGAACTAGCAAGATT+AGG 0.433817 7_1:-10919305 Msa1009480:five_prime_UTR
ACACTTCGGGTTCCCAAGCC+TGG 0.435882 7_1:-10918450 Msa1009480:CDS
ATTTGCAGTGTTGTTGGTAG+TGG 0.439406 7_1:-10919173 Msa1009480:five_prime_UTR
GTCTATTGTATAGGCTTTGG+AGG 0.440001 7_1:-10918683 Msa1009480:five_prime_UTR
GTAAAACCAGTCCAACCATT+TGG 0.442600 7_1:+10919088 None:intergenic
ACTTGTTAGATCATTAGATT+AGG 0.443257 7_1:+10922663 None:intergenic
GCCGTGGCAGCATCCGCAAT+TGG 0.448023 7_1:+10919838 None:intergenic
GATGACACCCAAAACACTTC+GGG 0.448978 7_1:-10918463 Msa1009480:CDS
TGCACCCAATGCCCTCGTTA+CGG 0.453861 7_1:+10919748 None:intergenic
GAGGACACTAGAGTGGGAAT+TGG 0.456363 7_1:-10922042 Msa1009480:five_prime_UTR
AAGAAGCATCTCTCCAGGCT+TGG 0.457854 7_1:+10918437 None:intergenic
AAACCATGGTTCTTTGTGCT+TGG 0.459388 7_1:-10919436 Msa1009480:five_prime_UTR
ACAAGTAAAACAAGTGATGC+AGG 0.460025 7_1:-10919067 Msa1009480:five_prime_UTR
CAGCGCCGTAACGAGGGCAT+TGG 0.460672 7_1:-10919753 Msa1009480:five_prime_UTR
CCAGTGACAGATTTCTGAGT+TGG 0.464665 7_1:-10922184 Msa1009480:five_prime_UTR
GTTTGTAGAAAATAGCTTTG+TGG 0.465118 7_1:+10918708 None:intergenic
ATTGGTGAAATTTGATGGAA+TGG 0.466997 7_1:+10922731 None:intergenic
GTAATTGAATGATAATCAAC+TGG 0.476814 7_1:-10920134 Msa1009480:five_prime_UTR
TATGATAATTTCATCCCATA+AGG 0.480276 7_1:-10922346 Msa1009480:intron
TCCAATTGCGGATGCTGCCA+CGG 0.480909 7_1:-10919839 Msa1009480:five_prime_UTR
AAAATTAAGTTGACGCCGCA+AGG 0.485545 7_1:-10919526 Msa1009480:five_prime_UTR
TTAAAATGCAGCCGCGGTTG+CGG 0.487955 7_1:+10919458 None:intergenic
TTTGTTACTCATTGCTGACT+AGG 0.489939 7_1:-10918931 Msa1009480:five_prime_UTR
AAGGGGCCAAATGGTTGGAC+TGG 0.491488 7_1:-10919094 Msa1009480:five_prime_UTR
TGATGGAATGGAGAGAAGAG+AGG 0.491759 7_1:+10922743 None:intergenic
ATTGTCCTTGTAAACACCTA+GGG 0.494564 7_1:+10918398 None:intergenic
ATGGAAATTTGCAGTGTTGT+TGG 0.502616 7_1:-10919179 Msa1009480:five_prime_UTR
ATATTTATGATAGCCATGTA+TGG 0.514750 7_1:-10919198 Msa1009480:five_prime_UTR
ATTAGAACAATATAATAAGT+AGG 0.516081 7_1:-10918787 Msa1009480:five_prime_UTR
CAAGAAGGTCTTCTAACTCC+TGG 0.519877 7_1:-10918631 Msa1009480:CDS
AGTGGTCAAAATCAATACCT+TGG 0.524178 7_1:-10919132 Msa1009480:five_prime_UTR
AACAGATGACTATTTGTATG+AGG 0.524644 7_1:-10919927 Msa1009480:intron
TCTGTCCATGGATCACCCCT+AGG 0.525999 7_1:-10918414 Msa1009480:CDS
ACATTATAGGAGAATTTAAG+AGG 0.528369 7_1:-10919257 Msa1009480:five_prime_UTR
TACTTAGAGATAAAGATGAA+TGG 0.531319 7_1:-10918882 Msa1009480:five_prime_UTR
GGATGACACCCAAAACACTT+CGG 0.531639 7_1:-10918464 Msa1009480:CDS
TTGCGATATTGCAGCTATTG+CGG 0.533335 7_1:+10919490 None:intergenic
TTGTTACTCATTGCTGACTA+GGG 0.539866 7_1:-10918930 Msa1009480:five_prime_UTR
CACTAGAGTGGGAATTGGCA+AGG 0.548048 7_1:-10922037 Msa1009480:five_prime_UTR
GATGGAATGGAGAGAAGAGA+GGG 0.548358 7_1:+10922744 None:intergenic
ACAGAAAGAAGCATCTCTCC+AGG 0.551277 7_1:+10918432 None:intergenic
ACACTGCAAATTTCCATACA+TGG 0.552409 7_1:+10919185 None:intergenic
CTGTATATGGTTTCCAATTG+CGG 0.556227 7_1:-10919851 Msa1009480:five_prime_UTR
AAAGGCAGCGACCGCAACCG+CGG 0.558592 7_1:-10919469 Msa1009480:five_prime_UTR
TATTGTCCTTGTAAACACCT+AGG 0.567249 7_1:+10918397 None:intergenic
ACCATAAATCAGAATTGAGT+GGG 0.567606 7_1:+10922623 None:intergenic
TACAAAATCATATTTGCATG+TGG 0.569031 7_1:+10922694 None:intergenic
CAAGTAAAACAAGTGATGCA+GGG 0.575227 7_1:-10919066 Msa1009480:five_prime_UTR
GAGGAGAGAGGACACTAGAG+TGG 0.575461 7_1:-10922049 Msa1009480:five_prime_UTR
ATCACCCCTAGGTGTTTACA+AGG 0.589706 7_1:-10918403 Msa1009480:CDS
CACCATAAATCAGAATTGAG+TGG 0.601725 7_1:+10922622 None:intergenic
AGGAGAGAGGACACTAGAGT+GGG 0.604291 7_1:-10922048 Msa1009480:five_prime_UTR
CGTGTGTTTGAGAAGAGAGA+GGG 0.605350 7_1:+10922773 None:intergenic
GAAACCGCAGCGCCGTAACG+AGG 0.608433 7_1:-10919760 Msa1009480:five_prime_UTR
CCAACTCAGAAATCTGTCAC+TGG 0.608693 7_1:+10922184 None:intergenic
CCGTGTGTTTGAGAAGAGAG+AGG 0.610143 7_1:+10922772 None:intergenic
AAACCGCAGCGCCGTAACGA+GGG 0.610553 7_1:-10919759 Msa1009480:five_prime_UTR
AAGTAAAACAAGTGATGCAG+GGG 0.612390 7_1:-10919065 Msa1009480:five_prime_UTR
CAGATGTTAGCGATGCAAGA+AGG 0.615125 7_1:-10918646 Msa1009480:CDS
TTTAAAACTTAGTAAAACCA+AGG 0.621699 7_1:+10919115 None:intergenic
ATTGAATGATAATCAACTGG+TGG 0.623328 7_1:-10920131 Msa1009480:five_prime_UTR
AAACACCTAGGGGTGATCCA+TGG 0.624497 7_1:+10918409 None:intergenic
GCTAACATCTGAGTTTCAGA+TGG 0.626740 7_1:+10918658 None:intergenic
CAATAGCTGCAATATCGCAA+AGG 0.631819 7_1:-10919487 Msa1009480:five_prime_UTR
CCTCTCTCTTCTCAAACACA+CGG 0.632486 7_1:-10922772 Msa1009480:five_prime_UTR
TTGAATGATAATCAACTGGT+GGG 0.648498 7_1:-10920130 Msa1009480:five_prime_UTR
AGAACAATATAATAAGTAGG+TGG 0.653436 7_1:-10918784 Msa1009480:five_prime_UTR
ACTAGAGTGGGAATTGGCAA+GGG 0.655908 7_1:-10922036 Msa1009480:five_prime_UTR
ATGCCCTCGTTACGGCGCTG+CGG 0.657831 7_1:+10919756 None:intergenic
AAACCATATACAGATCACAT+TGG 0.667771 7_1:+10919861 None:intergenic
GAAAGCTACACCAACAACAG+TGG 0.674809 7_1:+10919003 None:intergenic
TGTTTACAAGGACAATAACA+TGG 0.678598 7_1:-10918391 Msa1009480:CDS
TTGTCCTTGTAAACACCTAG+GGG 0.684309 7_1:+10918399 None:intergenic
CGTGATTACAGATAATGCCG+TGG 0.685003 7_1:+10919822 None:intergenic
ACACCAAGCACAAAGAACCA+TGG 0.715252 7_1:+10919433 None:intergenic
TTGGGTGCAGAAAACTACAG+AGG 0.735727 7_1:-10919734 Msa1009480:five_prime_UTR
GGTGTGTATTGTCGTCCTTG+CGG 0.769996 7_1:+10919511 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGATTTTCTATTTATAATT+TGG - chr7_1:10920176-10920195 Msa1009480:intron 10.0%
!! TATAATTTGGAAAAATTATT+TGG - chr7_1:10920189-10920208 Msa1009480:intron 10.0%
!! AAATTGAATGTAAAAATTGT+AGG - chr7_1:10918601-10918620 Msa1009480:intron 15.0%
!!! AAACTTTTCATATCATAAAT+TGG + chr7_1:10919008-10919027 None:intergenic 15.0%
!!! TTTAAAATTAGTGATTTGTT+GGG - chr7_1:10919078-10919097 Msa1009480:five_prime_UTR 15.0%
!!! TGATTGATTTTTAATGAATT+TGG - chr7_1:10919181-10919200 Msa1009480:five_prime_UTR 15.0%
!!! TTAAAAATCAATCAAAGTTT+TGG + chr7_1:10919256-10919275 None:intergenic 15.0%
!!! TTTATTTGATAACACATTTT+TGG - chr7_1:10919979-10919998 Msa1009480:intron 15.0%
!!! TTATTTGATAACACATTTTT+GGG - chr7_1:10919980-10919999 Msa1009480:intron 15.0%
!!! TGTTTGCAAATTTTATTTTA+TGG - chr7_1:10920571-10920590 Msa1009480:intron 15.0%
!!! TGTGAATTTGAATTTTTTTT+GGG - chr7_1:10920648-10920667 Msa1009480:intron 15.0%
!!! ATATTGAAAATTTTTCTTTG+TGG - chr7_1:10920946-10920965 Msa1009480:intron 15.0%
!!! TATTGAAAATTTTTCTTTGT+GGG - chr7_1:10920947-10920966 Msa1009480:intron 15.0%
!! ATTATAATCTAAAAACTGTA+TGG + chr7_1:10921524-10921543 None:intergenic 15.0%
!!! CAGTTTTTAGATTATAATTT+AGG - chr7_1:10921526-10921545 Msa1009480:intron 15.0%
!!! TTTTTAGATTATAATTTAGG+TGG - chr7_1:10921529-10921548 Msa1009480:intron 15.0%
!! AACAAAATCAAACAAATAAA+TGG + chr7_1:10921955-10921974 None:intergenic 15.0%
!! ATTAGAACAATATAATAAGT+AGG - chr7_1:10922113-10922132 Msa1009480:intron 15.0%
!! TTAATTAATCATACCATTTA+TGG + chr7_1:10922538-10922557 None:intergenic 15.0%
!! TATGATTAATTAAAATGCTA+AGG - chr7_1:10922545-10922564 Msa1009480:intron 15.0%
!! CAAAATCAATTATATTACAT+AGG + chr7_1:10922691-10922710 None:intergenic 15.0%
!!! CTATGTAATATAATTGATTT+TGG - chr7_1:10922689-10922708 Msa1009480:five_prime_UTR 15.0%
!! ATTTAATTGATAGATTGTGT+AGG - chr7_1:10918374-10918393 Msa1009480:intron 20.0%
!!! CAGCTATAAATAATTTTGTA+TGG - chr7_1:10918965-10918984 Msa1009480:five_prime_UTR 20.0%
!!! TATGAAAAGTTTTTTCTTTG+TGG - chr7_1:10919016-10919035 Msa1009480:five_prime_UTR 20.0%
!!! ATGAAAAGTTTTTTCTTTGT+GGG - chr7_1:10919017-10919036 Msa1009480:five_prime_UTR 20.0%
!!! GTTTAAAATTAGTGATTTGT+TGG - chr7_1:10919077-10919096 Msa1009480:five_prime_UTR 20.0%
!!! GTTGATGAATCTAATTTTTT+TGG - chr7_1:10919203-10919222 Msa1009480:five_prime_UTR 20.0%
!!! TGATTGATTTTTAATGACAT+TGG - chr7_1:10919262-10919281 Msa1009480:five_prime_UTR 20.0%
!! ATATCATTCATACAGTTATA+CGG - chr7_1:10919329-10919348 Msa1009480:five_prime_UTR 20.0%
!! AGTACTTAGATCATAATTAA+TGG + chr7_1:10919434-10919453 None:intergenic 20.0%
!!! TTTGAAAAAACGACTATTTT+TGG - chr7_1:10919772-10919791 Msa1009480:five_prime_UTR 20.0%
!!! ATCTGAAAATAAGTTTGTTT+TGG + chr7_1:10920064-10920083 None:intergenic 20.0%
!!! GTGTGAATTTGAATTTTTTT+TGG - chr7_1:10920647-10920666 Msa1009480:intron 20.0%
!! TACCTTCAATAAGAATTATA+AGG - chr7_1:10920860-10920879 Msa1009480:intron 20.0%
!!! TTGCTTTTTATAATCTATTC+AGG - chr7_1:10920903-10920922 Msa1009480:intron 20.0%
!!! TTTTCAATATCATAAATTCG+TGG + chr7_1:10920936-10920955 None:intergenic 20.0%
!!! TGATATTTTAAACTGATAGA+TGG - chr7_1:10921259-10921278 Msa1009480:intron 20.0%
!!! GCATCAAAATTTAACTTAAT+TGG + chr7_1:10921499-10921518 None:intergenic 20.0%
!!! TTTGTATTTTCAACTTTTAG+TGG - chr7_1:10921750-10921769 Msa1009480:intron 20.0%
!!! TTTAAAACTTAGTAAAACCA+AGG + chr7_1:10921788-10921807 None:intergenic 20.0%
!!! TTGGTTTTACTAAGTTTTAA+AGG - chr7_1:10921787-10921806 Msa1009480:intron 20.0%
!!! TGGTTTTACTAAGTTTTAAA+GGG - chr7_1:10921788-10921807 Msa1009480:intron 20.0%
!! TTATCAAACTATATAGTTGT+TGG - chr7_1:10922169-10922188 Msa1009480:intron 20.0%
!!! AATATATTTTTTGCAGATTG+TGG - chr7_1:10922811-10922830 Msa1009480:five_prime_UTR 20.0%
!! TCTCTCTAAAAAAACAGAAA+CGG - chr7_1:10918094-10918113 Msa1009480:intron 25.0%
! AAGAAATTGGTGAAATTTGA+TGG + chr7_1:10918177-10918196 None:intergenic 25.0%
! TACAAAATCATATTTGCATG+TGG + chr7_1:10918209-10918228 None:intergenic 25.0%
!! ACTTGTTAGATCATTAGATT+AGG + chr7_1:10918240-10918259 None:intergenic 25.0%
!!! TTACTGATTTTTTTTTCTCC+AGG - chr7_1:10918512-10918531 Msa1009480:intron 25.0%
! TATGATAATTTCATCCCATA+AGG - chr7_1:10918554-10918573 Msa1009480:intron 25.0%
! TTACATAGAACATACCTTAT+GGG + chr7_1:10918571-10918590 None:intergenic 25.0%
! TTTACATAGAACATACCTTA+TGG + chr7_1:10918572-10918591 None:intergenic 25.0%
! ATGTTACTGTATAGATAAAC+CGG + chr7_1:10918810-10918829 None:intergenic 25.0%
!!! TGGTTTTAGCATAAATTTTC+AGG - chr7_1:10918829-10918848 Msa1009480:five_prime_UTR 25.0%
!!! TTTTAGCATAAATTTTCAGG+AGG - chr7_1:10918832-10918851 Msa1009480:five_prime_UTR 25.0%
!!! TTTTTAATGACATTGGTTGA+TGG - chr7_1:10919269-10919288 Msa1009480:five_prime_UTR 25.0%
! TTTGCAGAACAATTATACAA+TGG - chr7_1:10919380-10919399 Msa1009480:five_prime_UTR 25.0%
! AATGGATGCATACAAATTAA+TGG + chr7_1:10919416-10919435 None:intergenic 25.0%
! TATTGTTTGTGCTATGAATT+AGG - chr7_1:10919463-10919482 Msa1009480:five_prime_UTR 25.0%
!! ATTTTGCCAAAAAGATTTCT+TGG - chr7_1:10919519-10919538 Msa1009480:five_prime_UTR 25.0%
! ATACTATAGTATGAGTAGAT+TGG + chr7_1:10919570-10919589 None:intergenic 25.0%
! ATATACACATTGCAAAAAGA+TGG + chr7_1:10919910-10919929 None:intergenic 25.0%
! GATCATTTAATTGTACAATC+TGG + chr7_1:10920012-10920031 None:intergenic 25.0%
! AAAATTATTTGGTCTATTCG+TGG - chr7_1:10920200-10920219 Msa1009480:intron 25.0%
! CTTCAAAAAATCTTGACATA+TGG + chr7_1:10920347-10920366 None:intergenic 25.0%
!! AACTATCTAAAGTTCTATCA+AGG - chr7_1:10920475-10920494 Msa1009480:intron 25.0%
!!! GCAAATTTTATTTTATGGTG+AGG - chr7_1:10920576-10920595 Msa1009480:intron 25.0%
! TTGATTATCATTCAATTACC+TGG + chr7_1:10920765-10920784 None:intergenic 25.0%
! GTAATTGAATGATAATCAAC+TGG - chr7_1:10920766-10920785 Msa1009480:intron 25.0%
! CACCTTATAATTCTTATTGA+AGG + chr7_1:10920865-10920884 None:intergenic 25.0%
!!! ATGAGATAAAGATTTTAGAG+AGG - chr7_1:10921287-10921306 Msa1009480:intron 25.0%
! TATATAGAACTAGCAAGATT+AGG - chr7_1:10921595-10921614 Msa1009480:intron 25.0%
! ACATTATAGGAGAATTTAAG+AGG - chr7_1:10921643-10921662 Msa1009480:intron 25.0%
! ATATTTATGATAGCCATGTA+TGG - chr7_1:10921702-10921721 Msa1009480:intron 25.0%
!!! GGTTTTACTAAGTTTTAAAG+GGG - chr7_1:10921789-10921808 Msa1009480:intron 25.0%
! TACTTAGAGATAAAGATGAA+TGG - chr7_1:10922018-10922037 Msa1009480:five_prime_UTR 25.0%
! AGAACAATATAATAAGTAGG+TGG - chr7_1:10922116-10922135 Msa1009480:intron 25.0%
! TACAAACATGTCTATTGTAT+AGG - chr7_1:10922208-10922227 Msa1009480:five_prime_UTR 25.0%
! AGTTCATTTAAATGAAATGC+AGG + chr7_1:10922312-10922331 None:intergenic 25.0%
!!! GATATGTTTTTGAGTGTAAA+AGG - chr7_1:10922334-10922353 Msa1009480:intron 25.0%
! TTCATTCTTTACCATGTTAA+AGG - chr7_1:10922584-10922603 Msa1009480:intron 25.0%
! TATTTCTTGTTCCTTTAACA+TGG + chr7_1:10922598-10922617 None:intergenic 25.0%
! ATATCAAAATCACAGCATTA+TGG + chr7_1:10922631-10922650 None:intergenic 25.0%
!!! TGTTTTTTTAGAGAGAGAAG+GGG + chr7_1:10918090-10918109 None:intergenic 30.0%
!!! CTGTTTTTTTAGAGAGAGAA+GGG + chr7_1:10918091-10918110 None:intergenic 30.0%
!!! TCTGTTTTTTTAGAGAGAGA+AGG + chr7_1:10918092-10918111 None:intergenic 30.0%
! CTCTCTAAAAAAACAGAAAC+GGG - chr7_1:10918095-10918114 Msa1009480:intron 30.0%
ATTGGTGAAATTTGATGGAA+TGG + chr7_1:10918172-10918191 None:intergenic 30.0%
ACCATAAATCAGAATTGAGT+GGG + chr7_1:10918280-10918299 None:intergenic 30.0%
!!! TATGGTGAGTTTTGTTTGAT+TGG - chr7_1:10918294-10918313 Msa1009480:intron 30.0%
!!! ATGGTGAGTTTTGTTTGATT+GGG - chr7_1:10918295-10918314 Msa1009480:intron 30.0%
!! ATTAAAATCTAGAAGTGTCC+TGG + chr7_1:10918533-10918552 None:intergenic 30.0%
! TGTATGACTTTTGTATCTAC+CGG - chr7_1:10918788-10918807 Msa1009480:five_prime_UTR 30.0%
GGTTTATCTATACAGTAACA+TGG - chr7_1:10918809-10918828 Msa1009480:five_prime_UTR 30.0%
TCTAGCAGAATGATAATTGA+AGG - chr7_1:10918898-10918917 Msa1009480:five_prime_UTR 30.0%
!! GATAAGTTTTATGTGTTTGC+TGG - chr7_1:10919050-10919069 Msa1009480:five_prime_UTR 30.0%
CTTTGTGTAGAAATGTTTGT+TGG - chr7_1:10919120-10919139 Msa1009480:five_prime_UTR 30.0%
!! TCACTGTCATCTAAAGTTTT+AGG + chr7_1:10919297-10919316 None:intergenic 30.0%
!! TACAAATTAATGGACTTCCA+AGG + chr7_1:10919406-10919425 None:intergenic 30.0%
! CTTTCACCAAGAAATCTTTT+TGG + chr7_1:10919528-10919547 None:intergenic 30.0%
ACGTATAGATACATTATGCA+AGG - chr7_1:10919818-10919837 Msa1009480:five_prime_UTR 30.0%
AAGAGTTCAAGTCTACTTAT+AGG - chr7_1:10919880-10919899 Msa1009480:five_prime_UTR 30.0%
TAAATGATCTCAAAGTCAGT+AGG - chr7_1:10919951-10919970 Msa1009480:intron 30.0%
TCAGATCATTTATAACCCAA+AGG - chr7_1:10920078-10920097 Msa1009480:five_prime_UTR 30.0%
CAGATCATTTATAACCCAAA+GGG - chr7_1:10920079-10920098 Msa1009480:five_prime_UTR 30.0%
TATTGTGAAATCAACCCTTT+GGG + chr7_1:10920096-10920115 None:intergenic 30.0%
! GAAGACTTTTACACAGAAAA+TGG + chr7_1:10920122-10920141 None:intergenic 30.0%
! GAGAATCTGCATTGATATTA+TGG + chr7_1:10920150-10920169 None:intergenic 30.0%
AAGATTCTTGAGAACATTGT+AGG + chr7_1:10920250-10920269 None:intergenic 30.0%
AATGCATCTAATAAGTGCTA+AGG + chr7_1:10920525-10920544 None:intergenic 30.0%
TAAGATACTGATGATACAGA+TGG + chr7_1:10920709-10920728 None:intergenic 30.0%
! TTACCAAGCTTAATTTTTCC+AGG - chr7_1:10920744-10920763 Msa1009480:intron 30.0%
TTACCTGGAAAAATTAAGCT+TGG + chr7_1:10920750-10920769 None:intergenic 30.0%
ATTGAATGATAATCAACTGG+TGG - chr7_1:10920769-10920788 Msa1009480:intron 30.0%
TTGAATGATAATCAACTGGT+GGG - chr7_1:10920770-10920789 Msa1009480:intron 30.0%
AACAGATGACTATTTGTATG+AGG - chr7_1:10920973-10920992 Msa1009480:intron 30.0%
AAACCATATACAGATCACAT+TGG + chr7_1:10921042-10921061 None:intergenic 30.0%
!! AAAGATTTTAGAGAGGAAAC+AGG - chr7_1:10921294-10921313 Msa1009480:intron 30.0%
CCTATAATGTAGACATTGTA+TGG + chr7_1:10921633-10921652 None:intergenic 30.0%
CCATACAATGTCTACATTAT+AGG - chr7_1:10921630-10921649 Msa1009480:intron 30.0%
GTAATGTCTTGAATCTTCAT+TGG - chr7_1:10921992-10922011 Msa1009480:intron 30.0%
! GTTTGTAGAAAATAGCTTTG+TGG + chr7_1:10922195-10922214 None:intergenic 30.0%
CATTTAAATGAAATGCAGGA+AGG + chr7_1:10922308-10922327 None:intergenic 30.0%
TGTTTACAAGGACAATAACA+TGG - chr7_1:10922509-10922528 Msa1009480:intron 30.0%
AATAACATGGAAGCCATAAA+TGG - chr7_1:10922522-10922541 Msa1009480:intron 30.0%
GATTCAAAGACTGAAATAGA+AGG + chr7_1:10922664-10922683 None:intergenic 30.0%
ATTCTGTGATTGTTCTGTTT+CGG - chr7_1:10922834-10922853 Msa1009480:five_prime_UTR 30.0%
TCATATTTGCATGTGGAGTT+TGG + chr7_1:10918202-10918221 None:intergenic 35.0%
ACCCACTCAATTCTGATTTA+TGG - chr7_1:10918276-10918295 Msa1009480:intron 35.0%
CACCATAAATCAGAATTGAG+TGG + chr7_1:10918281-10918300 None:intergenic 35.0%
TAGATTGTGTAGGTATGAAG+AGG - chr7_1:10918384-10918403 Msa1009480:CDS 35.0%
AGATTGTGTAGGTATGAAGA+GGG - chr7_1:10918385-10918404 Msa1009480:CDS 35.0%
TGCACAGTGAAAAAGAAAAG+AGG - chr7_1:10918687-10918706 Msa1009480:five_prime_UTR 35.0%
! TGTTATGACCACTTGCATTT+TGG - chr7_1:10918756-10918775 Msa1009480:five_prime_UTR 35.0%
AAGTTAGTCCAAAATGCAAG+TGG + chr7_1:10918767-10918786 None:intergenic 35.0%
!! ATAAATTTTCAGGAGGAGAG+AGG - chr7_1:10918839-10918858 Msa1009480:five_prime_UTR 35.0%
GAACAATTATACAATGGCCT+TGG - chr7_1:10919386-10919405 Msa1009480:five_prime_UTR 35.0%
TGTTTGTGCTATGAATTAGG+TGG - chr7_1:10919466-10919485 Msa1009480:five_prime_UTR 35.0%
! ATTTGAAACAGTGTTGTGAC+AGG + chr7_1:10919617-10919636 None:intergenic 35.0%
AAACCAGTGTTATAGCATAG+CGG - chr7_1:10919747-10919766 Msa1009480:five_prime_UTR 35.0%
CTATTGTGAAATCAACCCTT+TGG + chr7_1:10920097-10920116 None:intergenic 35.0%
TGTTCTCAAGAATCTTAGTG+AGG - chr7_1:10920254-10920273 Msa1009480:intron 35.0%
!!! AGAGTGGTTTTATGATGCAT+TGG - chr7_1:10920283-10920302 Msa1009480:intron 35.0%
! AGAGTCTACTTTGAAGAGTA+AGG - chr7_1:10920370-10920389 Msa1009480:intron 35.0%
GAAGAGTAAGGTTAAGAACA+TGG - chr7_1:10920382-10920401 Msa1009480:intron 35.0%
GTGAAATTCCGAATGAGTTT+GGG - chr7_1:10920792-10920811 Msa1009480:intron 35.0%
CATTGGCAAATGTCACAAAA+AGG + chr7_1:10921025-10921044 None:intergenic 35.0%
TTGCCAATGTGATCTGTATA+TGG - chr7_1:10921036-10921055 Msa1009480:intron 35.0%
CTGTATATGGTTTCCAATTG+CGG - chr7_1:10921049-10921068 Msa1009480:intron 35.0%
ACACTGCAAATTTCCATACA+TGG + chr7_1:10921718-10921737 None:intergenic 35.0%
ATGGAAATTTGCAGTGTTGT+TGG - chr7_1:10921721-10921740 Msa1009480:intron 35.0%
AGTGGTCAAAATCAATACCT+TGG - chr7_1:10921768-10921787 Msa1009480:intron 35.0%
!!! TAAGTTTTAAAGGGGCCAAA+TGG - chr7_1:10921797-10921816 Msa1009480:intron 35.0%
ACAAGTAAAACAAGTGATGC+AGG - chr7_1:10921833-10921852 Msa1009480:intron 35.0%
CAAGTAAAACAAGTGATGCA+GGG - chr7_1:10921834-10921853 Msa1009480:intron 35.0%
AAGTAAAACAAGTGATGCAG+GGG - chr7_1:10921835-10921854 Msa1009480:intron 35.0%
! TGTCACTCAATCTGTTTTCA+TGG - chr7_1:10921868-10921887 Msa1009480:intron 35.0%
!!! ATGGTTTTATCCACTGTTGT+TGG - chr7_1:10921887-10921906 Msa1009480:intron 35.0%
! TTTGTTACTCATTGCTGACT+AGG - chr7_1:10921969-10921988 Msa1009480:intron 35.0%
! TTGTTACTCATTGCTGACTA+GGG - chr7_1:10921970-10921989 Msa1009480:intron 35.0%
CATGTCTATTGTATAGGCTT+TGG - chr7_1:10922214-10922233 Msa1009480:five_prime_UTR 35.0%
GTGTAAAAGGTTGTCACAAA+TGG - chr7_1:10922347-10922366 Msa1009480:five_prime_UTR 35.0%
GTTGTTAACTCTTCAGTTGA+AGG + chr7_1:10922373-10922392 None:intergenic 35.0%
ATTGTCCTTGTAAACACCTA+GGG + chr7_1:10922505-10922524 None:intergenic 35.0%
TATTGTCCTTGTAAACACCT+AGG + chr7_1:10922506-10922525 None:intergenic 35.0%
CACATCACATGATATTGCAA+CGG + chr7_1:10922779-10922798 None:intergenic 35.0%
TTCTGTGATTGTTCTGTTTC+GGG - chr7_1:10922835-10922854 Msa1009480:five_prime_UTR 35.0%
! GTGGAGTTTGGTGAAGAAAT+TGG + chr7_1:10918190-10918209 None:intergenic 40.0%
! CAGATTTCTGAGTTGGAAGT+AGG - chr7_1:10918723-10918742 Msa1009480:five_prime_UTR 40.0%
!! TTTTTCTTTGTGGGCTGAAC+AGG - chr7_1:10919026-10919045 Msa1009480:five_prime_UTR 40.0%
!! GTTTTATGTGTTTGCTGGTG+AGG - chr7_1:10919055-10919074 Msa1009480:five_prime_UTR 40.0%
GTGGTAAGCTAATCAACATG+AGG - chr7_1:10919485-10919504 Msa1009480:five_prime_UTR 40.0%
ACTATAGTATGCCAGTGTCT+CGG - chr7_1:10919580-10919599 Msa1009480:five_prime_UTR 40.0%
AAATGAATGTTCCGAGACAC+TGG + chr7_1:10919594-10919613 None:intergenic 40.0%
AACCAGTGTTATAGCATAGC+GGG - chr7_1:10919748-10919767 Msa1009480:five_prime_UTR 40.0%
CTCAAAGTCAGTAGGTTAGA+AGG - chr7_1:10920031-10920050 Msa1009480:intron 40.0%
AAGTCAGTAGGTTAGAAGGA+AGG - chr7_1:10920035-10920054 Msa1009480:intron 40.0%
! CTTAGTGAGGTATTACAGAG+TGG - chr7_1:10920267-10920286 Msa1009480:intron 40.0%
AGGTTAAGAACATGGTCAAG+AGG - chr7_1:10920390-10920409 Msa1009480:intron 40.0%
CATGTAGATCACATGGGTTT+GGG + chr7_1:10920502-10920521 None:intergenic 40.0%
CTAAGGCATGTAGATCACAT+GGG + chr7_1:10920508-10920527 None:intergenic 40.0%
GGTGAAATTCCGAATGAGTT+TGG - chr7_1:10920791-10920810 Msa1009480:intron 40.0%
TCAAGCTTCCCAAACTCATT+CGG + chr7_1:10920803-10920822 None:intergenic 40.0%
!! AAAATTAAGTTGACGCCGCA+AGG - chr7_1:10921374-10921393 Msa1009480:intron 40.0%
TTGCGATATTGCAGCTATTG+CGG + chr7_1:10921413-10921432 None:intergenic 40.0%
CAATAGCTGCAATATCGCAA+AGG - chr7_1:10921413-10921432 Msa1009480:intron 40.0%
!!! ATGGTTTTAAAATGCAGCCG+CGG + chr7_1:10921451-10921470 None:intergenic 40.0%
AAACCATGGTTCTTTGTGCT+TGG - chr7_1:10921464-10921483 Msa1009480:intron 40.0%
! ATTTGCAGTGTTGTTGGTAG+TGG - chr7_1:10921727-10921746 Msa1009480:intron 40.0%
!! TTTTAAAGGGGCCAAATGGT+TGG - chr7_1:10921801-10921820 Msa1009480:intron 40.0%
GTAAAACCAGTCCAACCATT+TGG + chr7_1:10921815-10921834 None:intergenic 40.0%
! GTCTATTGTATAGGCTTTGG+AGG - chr7_1:10922217-10922236 Msa1009480:five_prime_UTR 40.0%
GCTAACATCTGAGTTTCAGA+TGG + chr7_1:10922245-10922264 None:intergenic 40.0%
! CAACTGAATATGCGTTTTGC+AGG - chr7_1:10922389-10922408 Msa1009480:intron 40.0%
! AGTAGTCAGAGGTTTTCTGT+TGG - chr7_1:10922414-10922433 Msa1009480:intron 40.0%
! GTAGTCAGAGGTTTTCTGTT+GGG - chr7_1:10922415-10922434 Msa1009480:intron 40.0%
TTGTCCTTGTAAACACCTAG+GGG + chr7_1:10922504-10922523 None:intergenic 40.0%
TCACATGATATTGCAACGGA+AGG + chr7_1:10922775-10922794 None:intergenic 40.0%
CGTTGCAATATCATGTGATG+TGG - chr7_1:10922777-10922796 Msa1009480:five_prime_UTR 40.0%
CGTGTGTTTGAGAAGAGAGA+GGG + chr7_1:10918130-10918149 None:intergenic 45.0%
CCTCTCTCTTCTCAAACACA+CGG - chr7_1:10918128-10918147 Msa1009480:intron 45.0%
GATGGAATGGAGAGAAGAGA+GGG + chr7_1:10918159-10918178 None:intergenic 45.0%
TGATGGAATGGAGAGAAGAG+AGG + chr7_1:10918160-10918179 None:intergenic 45.0%
CCAACTCAGAAATCTGTCAC+TGG + chr7_1:10918719-10918738 None:intergenic 45.0%
CCAGTGACAGATTTCTGAGT+TGG - chr7_1:10918716-10918735 Msa1009480:five_prime_UTR 45.0%
ACTAGAGTGGGAATTGGCAA+GGG - chr7_1:10918864-10918883 Msa1009480:five_prime_UTR 45.0%
ATCCCGCTATGCTATAACAC+TGG + chr7_1:10919753-10919772 None:intergenic 45.0%
GCATGTAGATCACATGGGTT+TGG + chr7_1:10920503-10920522 None:intergenic 45.0%
GCTAAGGCATGTAGATCACA+TGG + chr7_1:10920509-10920528 None:intergenic 45.0%
!! CACAAGTAGCTCTAGATGCA+GGG + chr7_1:10920677-10920696 None:intergenic 45.0%
!! TCACAAGTAGCTCTAGATGC+AGG + chr7_1:10920678-10920697 None:intergenic 45.0%
CGTGATTACAGATAATGCCG+TGG + chr7_1:10921081-10921100 None:intergenic 45.0%
TTGGGTGCAGAAAACTACAG+AGG - chr7_1:10921166-10921185 Msa1009480:intron 45.0%
!!! GCGGCTGCATTTTAAAACCA+TGG - chr7_1:10921450-10921469 Msa1009480:intron 45.0%
ACACCAAGCACAAAGAACCA+TGG + chr7_1:10921470-10921489 None:intergenic 45.0%
GAAAGCTACACCAACAACAG+TGG + chr7_1:10921900-10921919 None:intergenic 45.0%
CAGATGTTAGCGATGCAAGA+AGG - chr7_1:10922254-10922273 Msa1009480:intron 45.0%
CAAGAAGGTCTTCTAACTCC+TGG - chr7_1:10922269-10922288 Msa1009480:intron 45.0%
GAAGGAGAGATACTTACACC+AGG + chr7_1:10922290-10922309 None:intergenic 45.0%
! TTTTGCAGGTGAGTAGTCAG+AGG - chr7_1:10922403-10922422 Msa1009480:intron 45.0%
GGATGACACCCAAAACACTT+CGG - chr7_1:10922436-10922455 Msa1009480:intron 45.0%
GATGACACCCAAAACACTTC+GGG - chr7_1:10922437-10922456 Msa1009480:intron 45.0%
!! TTGGGAACCCGAAGTGTTTT+GGG + chr7_1:10922447-10922466 None:intergenic 45.0%
!! ACAGAAAGAAGCATCTCTCC+AGG + chr7_1:10922471-10922490 None:intergenic 45.0%
GAGATGCTTCTTTCTGTCCA+TGG - chr7_1:10922474-10922493 Msa1009480:intron 45.0%
ATCACCCCTAGGTGTTTACA+AGG - chr7_1:10922497-10922516 Msa1009480:intron 45.0%
!!! ATTTACTATTATTTATTTTA+TGG + chr7_1:10921335-10921354 None:intergenic 5.0%
CCGTGTGTTTGAGAAGAGAG+AGG + chr7_1:10918131-10918150 None:intergenic 50.0%
AGGAGAGAGGACACTAGAGT+GGG - chr7_1:10918852-10918871 Msa1009480:five_prime_UTR 50.0%
GAGGACACTAGAGTGGGAAT+TGG - chr7_1:10918858-10918877 Msa1009480:five_prime_UTR 50.0%
CACTAGAGTGGGAATTGGCA+AGG - chr7_1:10918863-10918882 Msa1009480:five_prime_UTR 50.0%
GGTGTGTATTGTCGTCCTTG+CGG + chr7_1:10921392-10921411 None:intergenic 50.0%
TTAAAATGCAGCCGCGGTTG+CGG + chr7_1:10921445-10921464 None:intergenic 50.0%
!! CTTGGGAACCCGAAGTGTTT+TGG + chr7_1:10922448-10922467 None:intergenic 50.0%
!! AGAAGCATCTCTCCAGGCTT+GGG + chr7_1:10922465-10922484 None:intergenic 50.0%
!! AAGAAGCATCTCTCCAGGCT+TGG + chr7_1:10922466-10922485 None:intergenic 50.0%
AAACACCTAGGGGTGATCCA+TGG + chr7_1:10922494-10922513 None:intergenic 50.0%
GAGGAGAGAGGACACTAGAG+TGG - chr7_1:10918851-10918870 Msa1009480:five_prime_UTR 55.0%
TCCAATTGCGGATGCTGCCA+CGG - chr7_1:10921061-10921080 Msa1009480:intron 55.0%
TGCACCCAATGCCCTCGTTA+CGG + chr7_1:10921155-10921174 None:intergenic 55.0%
AAGGGGCCAAATGGTTGGAC+TGG - chr7_1:10921806-10921825 Msa1009480:intron 55.0%
TCTGTCCATGGATCACCCCT+AGG - chr7_1:10922486-10922505 Msa1009480:intron 55.0%
AAACCGCAGCGCCGTAACGA+GGG - chr7_1:10921141-10921160 Msa1009480:intron 60.0%
!! AGCGCCGTAACGAGGGCATT+GGG - chr7_1:10921148-10921167 Msa1009480:intron 60.0%
! ACACTTCGGGTTCCCAAGCC+TGG - chr7_1:10922450-10922469 Msa1009480:intron 60.0%
GCCGTGGCAGCATCCGCAAT+TGG + chr7_1:10921065-10921084 None:intergenic 65.0%
GAAACCGCAGCGCCGTAACG+AGG - chr7_1:10921140-10921159 Msa1009480:intron 65.0%
ATGCCCTCGTTACGGCGCTG+CGG + chr7_1:10921147-10921166 None:intergenic 65.0%
! CAGCGCCGTAACGAGGGCAT+TGG - chr7_1:10921147-10921166 Msa1009480:intron 65.0%
AAAGGCAGCGACCGCAACCG+CGG - chr7_1:10921431-10921450 Msa1009480:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 10918061 10922861 10918061 ID=Msa1009480;Name=Msa1009480
chr7_1 mRNA 10918061 10922861 10918061 ID=Msa1009480-mRNA-1;Parent=Msa1009480;Name=Msa1009480-mRNA-1;_AED=0.22;_eAED=0.22;_QI=1825|0.85|0.75|1|0.28|0.37|8|0|67
chr7_1 exon 10918061 10918095 10918061 ID=Msa1009480-mRNA-1:exon:2951;Parent=Msa1009480-mRNA-1
chr7_1 exon 10918379 10918511 10918379 ID=Msa1009480-mRNA-1:exon:2950;Parent=Msa1009480-mRNA-1
chr7_1 exon 10918630 10919944 10918630 ID=Msa1009480-mRNA-1:exon:2949;Parent=Msa1009480-mRNA-1
chr7_1 exon 10920039 10920156 10920039 ID=Msa1009480-mRNA-1:exon:2948;Parent=Msa1009480-mRNA-1
chr7_1 exon 10922003 10922071 10922003 ID=Msa1009480-mRNA-1:exon:2947;Parent=Msa1009480-mRNA-1
chr7_1 exon 10922182 10922261 10922182 ID=Msa1009480-mRNA-1:exon:2946;Parent=Msa1009480-mRNA-1
chr7_1 exon 10922347 10922388 10922347 ID=Msa1009480-mRNA-1:exon:2945;Parent=Msa1009480-mRNA-1
chr7_1 exon 10922625 10922861 10922625 ID=Msa1009480-mRNA-1:exon:2944;Parent=Msa1009480-mRNA-1
chr7_1 five_prime_UTR 10922625 10922861 10922625 ID=Msa1009480-mRNA-1:five_prime_utr;Parent=Msa1009480-mRNA-1
chr7_1 five_prime_UTR 10922347 10922388 10922347 ID=Msa1009480-mRNA-1:five_prime_utr;Parent=Msa1009480-mRNA-1
chr7_1 five_prime_UTR 10922182 10922261 10922182 ID=Msa1009480-mRNA-1:five_prime_utr;Parent=Msa1009480-mRNA-1
chr7_1 five_prime_UTR 10922003 10922071 10922003 ID=Msa1009480-mRNA-1:five_prime_utr;Parent=Msa1009480-mRNA-1
chr7_1 five_prime_UTR 10920039 10920156 10920039 ID=Msa1009480-mRNA-1:five_prime_utr;Parent=Msa1009480-mRNA-1
chr7_1 five_prime_UTR 10918666 10919944 10918666 ID=Msa1009480-mRNA-1:five_prime_utr;Parent=Msa1009480-mRNA-1
chr7_1 CDS 10918630 10918665 10918630 ID=Msa1009480-mRNA-1:cds;Parent=Msa1009480-mRNA-1
chr7_1 CDS 10918379 10918511 10918379 ID=Msa1009480-mRNA-1:cds;Parent=Msa1009480-mRNA-1
chr7_1 CDS 10918061 10918095 10918061 ID=Msa1009480-mRNA-1:cds;Parent=Msa1009480-mRNA-1
Gene Sequence

>Msa1009480

ATGTTAGCGATGCAAGAAGGTCTTCTAACTCCTGGTGTGAGTAGTCAGAGGTTTTCTGTTGGGATGACACCCAAAACACTTCGGGTTCCCAAGCCTGGAGAGATGCTTCTTTCTGTCCATGGATCACCCCTAGGTGTTTACAAGGACAATAACATGGAAGCCATAAATGATTGTGGATTCTGTGATTGTTCTGTTTCGGGCTGA
Protein sequence

>Msa1009480

MLAMQEGLLTPGVSSQRFSVGMTPKTLRVPKPGEMLLSVHGSPLGVYKDNNMEAINDCGFCDCSVSG*