AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0941090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0941090 MtrunA17_Chr6g0459221 96.429 56 2 0 2 57 178 233 4.41e-33 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0941090 AT4G39630.2 68.966 58 17 1 1 57 160 217 3.40e-22 85.1
Msa0941090 AT4G39630.1 68.966 58 17 1 1 57 173 230 7.23e-22 84.7

Find 83 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAATTAATCATACCATTTA+TGG 0.077957 6_3:+14316369 None:intergenic
GCATCAAAATTTAACTTAAT+TGG 0.092519 6_3:+14317408 None:intergenic
TTCTGTGATTGTTCTGTTTC+GGG 0.170403 6_3:-14316069 Msa0941090:CDS
CTTGGGAACCCGAAGTGTTT+TGG 0.200607 6_3:+14316459 None:intergenic
ATTAGAACAATATAATAATT+AGG 0.249782 6_3:-14316791 Msa0941090:five_prime_UTR
AACAAAATCAAACAAATAAA+TGG 0.259645 6_3:+14316952 None:intergenic
CCATACAATGTCTACATTAT+AGG 0.287632 6_3:-14317274 Msa0941090:five_prime_UTR
ATTCTGTGATTGTTCTGTTT+CGG 0.299823 6_3:-14316070 Msa0941090:CDS
GGTGAAATTCCGAATGAGTT+TGG 0.326879 6_3:-14318114 Msa0941090:five_prime_UTR
AATAACATGGAAGCCATAAA+TGG 0.330124 6_3:-14316382 Msa0941090:intron
TTGCCAATGTGATCTGTATA+TGG 0.340719 6_3:-14317868 Msa0941090:five_prime_UTR
TACAAACATGTCTATTGTAT+AGG 0.349271 6_3:-14316696 Msa0941090:five_prime_UTR
TACCTTCAATAAGAATTATA+AGG 0.353760 6_3:-14318044 Msa0941090:five_prime_UTR
CATGTCTATTGTATAGGCTT+TGG 0.355751 6_3:-14316690 Msa0941090:five_prime_UTR
GTGAAATTCCGAATGAGTTT+GGG 0.372675 6_3:-14318113 Msa0941090:five_prime_UTR
CATTGGCAAATGTCACAAAA+AGG 0.373345 6_3:+14317882 None:intergenic
TTATCAAACTATATAGTTGT+TGG 0.387443 6_3:-14316735 Msa0941090:five_prime_UTR
CACCTTATAATTCTTATTGA+AGG 0.388241 6_3:+14318042 None:intergenic
GTAATGTCTTGAATCTTCAT+TGG 0.410104 6_3:-14316912 Msa0941090:five_prime_UTR
CCTATAATGTAGACATTGTA+TGG 0.410759 6_3:+14317274 None:intergenic
GAGATGCTTCTTTCTGTCCA+TGG 0.428796 6_3:-14316430 Msa0941090:CDS
AGCGCCGTAACGAGGGCATT+GGG 0.430026 6_3:-14317756 Msa0941090:five_prime_UTR
TCAAGCTTCCCAAACTCATT+CGG 0.430405 6_3:+14318105 None:intergenic
AGAAGCATCTCTCCAGGCTT+GGG 0.431925 6_3:+14316442 None:intergenic
TATATAGAACTAGCAAGATT+AGG 0.433817 6_3:-14317309 Msa0941090:five_prime_UTR
ACACTTCGGGTTCCCAAGCC+TGG 0.435882 6_3:-14316454 Msa0941090:CDS
GTCTATTGTATAGGCTTTGG+AGG 0.440001 6_3:-14316687 Msa0941090:five_prime_UTR
GTAAAACCAGTCCAACCATT+TGG 0.442600 6_3:+14317092 None:intergenic
GCCGTGGCAGCATCCGCAAT+TGG 0.448023 6_3:+14317842 None:intergenic
GATGACACCCAAAACACTTC+GGG 0.448978 6_3:-14316467 Msa0941090:CDS
TGCACCCAATGCCCTCGTTA+CGG 0.453861 6_3:+14317752 None:intergenic
AAGAAGCATCTCTCCAGGCT+TGG 0.457854 6_3:+14316441 None:intergenic
TTAAAATGCAGCCGCGGTTG+TGG 0.458158 6_3:+14317462 None:intergenic
AAACCATGGTTCTTTGTGCT+TGG 0.459388 6_3:-14317440 Msa0941090:five_prime_UTR
ACAAGTAAAACAAGTGATGC+AGG 0.460025 6_3:-14317071 Msa0941090:five_prime_UTR
CAGCGCCGTAACGAGGGCAT+TGG 0.460672 6_3:-14317757 Msa0941090:five_prime_UTR
ATTTGCAGTGCTGTTGGTAG+TGG 0.460740 6_3:-14317177 Msa0941090:five_prime_UTR
GTTTGTAGAAAATAGCTTTG+TGG 0.465118 6_3:+14316712 None:intergenic
GTAATTGAATGATAATCAAC+TGG 0.476814 6_3:-14318139 Msa0941090:five_prime_UTR
TCCAATTGCGGATGCTGCCA+CGG 0.480909 6_3:-14317843 Msa0941090:five_prime_UTR
TTGATTATCATTCAATTACC+TGG 0.482956 6_3:+14318143 None:intergenic
CAAGAAGGTCTTCTGACTCC+TGG 0.484397 6_3:-14316635 Msa0941090:CDS
AAAATTAAGTTGACGCCGCA+AGG 0.485545 6_3:-14317530 Msa0941090:five_prime_UTR
TTTGTTACTCATTGCTGACT+AGG 0.489939 6_3:-14316935 Msa0941090:five_prime_UTR
AAGGGGCCAAATGGTTGGAC+TGG 0.491488 6_3:-14317098 Msa0941090:five_prime_UTR
ATTGTCCTTGTAAACACCTA+GGG 0.494564 6_3:+14316402 None:intergenic
ATATTTATGATAGCCATGTA+TGG 0.514750 6_3:-14317202 Msa0941090:five_prime_UTR
AGTGGTCAAAATCAATACCT+TGG 0.524178 6_3:-14317136 Msa0941090:five_prime_UTR
AACAGATGACTATTTGTATG+AGG 0.524644 6_3:-14317931 Msa0941090:intron
TCTGTCCATGGATCACCCCT+AGG 0.525999 6_3:-14316418 Msa0941090:CDS
ACATTATAGGAGAATTTAAG+AGG 0.528369 6_3:-14317261 Msa0941090:five_prime_UTR
TACTTAGAGATAAAGATGAA+TGG 0.531319 6_3:-14316886 Msa0941090:five_prime_UTR
GGATGACACCCAAAACACTT+CGG 0.531639 6_3:-14316468 Msa0941090:CDS
TTGCGATATTGCAGCTATTG+CGG 0.533335 6_3:+14317494 None:intergenic
TTGTTACTCATTGCTGACTA+GGG 0.539866 6_3:-14316934 Msa0941090:five_prime_UTR
ACAGAAAGAAGCATCTCTCC+AGG 0.551277 6_3:+14316436 None:intergenic
CTGTATATGGTTTCCAATTG+CGG 0.556227 6_3:-14317855 Msa0941090:five_prime_UTR
TATTGTCCTTGTAAACACCT+AGG 0.567249 6_3:+14316401 None:intergenic
CAAGTAAAACAAGTGATGCA+GGG 0.575227 6_3:-14317070 Msa0941090:five_prime_UTR
GCACTGCAAATTTCCATACA+TGG 0.581129 6_3:+14317189 None:intergenic
ATCACCCCTAGGTGTTTACA+AGG 0.589706 6_3:-14316407 Msa0941090:CDS
GAAACCGCAGCGCCGTAACG+AGG 0.608433 6_3:-14317764 Msa0941090:five_prime_UTR
AAACCGCAGCGCCGTAACGA+GGG 0.610553 6_3:-14317763 Msa0941090:five_prime_UTR
AAGTAAAACAAGTGATGCAG+GGG 0.612390 6_3:-14317069 Msa0941090:five_prime_UTR
CAGATGTTAGCGATGCAAGA+AGG 0.615125 6_3:-14316650 Msa0941090:CDS
AGAACAATATAATAATTAGG+TGG 0.615767 6_3:-14316788 Msa0941090:five_prime_UTR
ATGGAAATTTGCAGTGCTGT+TGG 0.620859 6_3:-14317183 Msa0941090:five_prime_UTR
TTTAAAACTTAGTAAAACCA+AGG 0.621699 6_3:+14317119 None:intergenic
ATTGAATGATAATCAACTGG+TGG 0.623328 6_3:-14318136 Msa0941090:five_prime_UTR
AAACACCTAGGGGTGATCCA+TGG 0.624497 6_3:+14316413 None:intergenic
GCTAACATCTGAGTTTCAGA+TGG 0.626740 6_3:+14316662 None:intergenic
CAATAGCTGCAATATCGCAA+AGG 0.631819 6_3:-14317491 Msa0941090:five_prime_UTR
AAAGGCAGCGACCACAACCG+CGG 0.632027 6_3:-14317473 Msa0941090:five_prime_UTR
TTGAATGATAATCAACTGGT+GGG 0.648498 6_3:-14318135 Msa0941090:five_prime_UTR
ATGCCCTCGTTACGGCGCTG+CGG 0.657831 6_3:+14317760 None:intergenic
AAACCATATACAGATCACAT+TGG 0.667771 6_3:+14317865 None:intergenic
TGTTTACAAGGACAATAACA+TGG 0.678598 6_3:-14316395 Msa0941090:CDS
TTGTCCTTGTAAACACCTAG+GGG 0.684309 6_3:+14316403 None:intergenic
CGTGATTACAGATAATGCCG+TGG 0.685003 6_3:+14317826 None:intergenic
GAAAGCTACACCAACAACCG+TGG 0.689954 6_3:+14317007 None:intergenic
ACACCAAGCACAAAGAACCA+TGG 0.715252 6_3:+14317437 None:intergenic
TTGGGTGCAGAAAACTACAG+AGG 0.735727 6_3:-14317738 Msa0941090:five_prime_UTR
GGTGTGTATTGTCGTCCTTG+CGG 0.769996 6_3:+14317515 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAGAACAATATAATAATT+AGG - chr6_3:14317429-14317448 Msa0941090:five_prime_UTR 10.0%
!! ATTAGAACAATATAATAATT+AGG - chr6_3:14317429-14317448 Msa0941090:five_prime_UTR 10.0%
!!! ATATTGAAATTTTTTCTTTG+TGG - chr6_3:14316262-14316281 Msa0941090:intron 15.0%
!!! TATTGAAATTTTTTCTTTGT+GGG - chr6_3:14316263-14316282 Msa0941090:intron 15.0%
!! ATTATAATCTAAAAACTGTA+TGG + chr6_3:14316840-14316859 None:intergenic 15.0%
!!! CAGTTTTTAGATTATAATTT+AGG - chr6_3:14316842-14316861 Msa0941090:five_prime_UTR 15.0%
!!! TTTTTAGATTATAATTTAGG+TGG - chr6_3:14316845-14316864 Msa0941090:five_prime_UTR 15.0%
!! AACAAAATCAAACAAATAAA+TGG + chr6_3:14317271-14317290 None:intergenic 15.0%
!! TTAATTAATCATACCATTTA+TGG + chr6_3:14317854-14317873 None:intergenic 15.0%
!! TATGATTAATTAAAATGCTA+AGG - chr6_3:14317861-14317880 Msa0941090:five_prime_UTR 15.0%
!! CAAAATCAATTATATTACAT+AGG + chr6_3:14318007-14318026 None:intergenic 15.0%
!!! CTATGTAATATAATTGATTT+TGG - chr6_3:14318005-14318024 Msa0941090:intron 15.0%
!!! ATATTGAAATTTTTTCTTTG+TGG - chr6_3:14316262-14316281 Msa0941090:intron 15.0%
!!! TATTGAAATTTTTTCTTTGT+GGG - chr6_3:14316263-14316282 Msa0941090:intron 15.0%
!! ATTATAATCTAAAAACTGTA+TGG + chr6_3:14316840-14316859 None:intergenic 15.0%
!!! CAGTTTTTAGATTATAATTT+AGG - chr6_3:14316842-14316861 Msa0941090:five_prime_UTR 15.0%
!!! TTTTTAGATTATAATTTAGG+TGG - chr6_3:14316845-14316864 Msa0941090:five_prime_UTR 15.0%
!! AACAAAATCAAACAAATAAA+TGG + chr6_3:14317271-14317290 None:intergenic 15.0%
!! TTAATTAATCATACCATTTA+TGG + chr6_3:14317854-14317873 None:intergenic 15.0%
!! TATGATTAATTAAAATGCTA+AGG - chr6_3:14317861-14317880 Msa0941090:five_prime_UTR 15.0%
!! CAAAATCAATTATATTACAT+AGG + chr6_3:14318007-14318026 None:intergenic 15.0%
!!! CTATGTAATATAATTGATTT+TGG - chr6_3:14318005-14318024 Msa0941090:intron 15.0%
!! TACCTTCAATAAGAATTATA+AGG - chr6_3:14316176-14316195 Msa0941090:intron 20.0%
!!! TTGCTTTTTATAATCTATTC+AGG - chr6_3:14316219-14316238 Msa0941090:intron 20.0%
!! ATTTCAATATCATAAATTCG+TGG + chr6_3:14316252-14316271 None:intergenic 20.0%
!!! TGATATTTTAAACTGATAGA+TGG - chr6_3:14316575-14316594 Msa0941090:intron 20.0%
!!! GCATCAAAATTTAACTTAAT+TGG + chr6_3:14316815-14316834 None:intergenic 20.0%
!!! TTTGTATTTTCAACTTTTAG+TGG - chr6_3:14317066-14317085 Msa0941090:five_prime_UTR 20.0%
!!! TTTAAAACTTAGTAAAACCA+AGG + chr6_3:14317104-14317123 None:intergenic 20.0%
!!! TTGGTTTTACTAAGTTTTAA+AGG - chr6_3:14317103-14317122 Msa0941090:five_prime_UTR 20.0%
!!! TGGTTTTACTAAGTTTTAAA+GGG - chr6_3:14317104-14317123 Msa0941090:five_prime_UTR 20.0%
!! AGAACAATATAATAATTAGG+TGG - chr6_3:14317432-14317451 Msa0941090:five_prime_UTR 20.0%
!! TTATCAAACTATATAGTTGT+TGG - chr6_3:14317485-14317504 Msa0941090:five_prime_UTR 20.0%
!!! AATATGTTTTTGAGTGTAAA+AGG - chr6_3:14317650-14317669 Msa0941090:five_prime_UTR 20.0%
!!! AATATATTTTTTGCAGATTG+TGG - chr6_3:14318127-14318146 Msa0941090:five_prime_UTR 20.0%
!! TACCTTCAATAAGAATTATA+AGG - chr6_3:14316176-14316195 Msa0941090:intron 20.0%
!!! TTGCTTTTTATAATCTATTC+AGG - chr6_3:14316219-14316238 Msa0941090:intron 20.0%
!! ATTTCAATATCATAAATTCG+TGG + chr6_3:14316252-14316271 None:intergenic 20.0%
!!! TGATATTTTAAACTGATAGA+TGG - chr6_3:14316575-14316594 Msa0941090:intron 20.0%
!!! GCATCAAAATTTAACTTAAT+TGG + chr6_3:14316815-14316834 None:intergenic 20.0%
!!! TTTGTATTTTCAACTTTTAG+TGG - chr6_3:14317066-14317085 Msa0941090:five_prime_UTR 20.0%
!!! TTTAAAACTTAGTAAAACCA+AGG + chr6_3:14317104-14317123 None:intergenic 20.0%
!!! TTGGTTTTACTAAGTTTTAA+AGG - chr6_3:14317103-14317122 Msa0941090:five_prime_UTR 20.0%
!!! TGGTTTTACTAAGTTTTAAA+GGG - chr6_3:14317104-14317123 Msa0941090:five_prime_UTR 20.0%
!! AGAACAATATAATAATTAGG+TGG - chr6_3:14317432-14317451 Msa0941090:five_prime_UTR 20.0%
!! TTATCAAACTATATAGTTGT+TGG - chr6_3:14317485-14317504 Msa0941090:five_prime_UTR 20.0%
!!! AATATGTTTTTGAGTGTAAA+AGG - chr6_3:14317650-14317669 Msa0941090:five_prime_UTR 20.0%
!!! AATATATTTTTTGCAGATTG+TGG - chr6_3:14318127-14318146 Msa0941090:five_prime_UTR 20.0%
! TTGATTATCATTCAATTACC+TGG + chr6_3:14316080-14316099 None:intergenic 25.0%
! GTAATTGAATGATAATCAAC+TGG - chr6_3:14316081-14316100 Msa0941090:intron 25.0%
! CACCTTATAATTCTTATTGA+AGG + chr6_3:14316181-14316200 None:intergenic 25.0%
!!! ATGAGATAAAGATTTTAGAG+AGG - chr6_3:14316603-14316622 Msa0941090:intron 25.0%
! TATATAGAACTAGCAAGATT+AGG - chr6_3:14316911-14316930 Msa0941090:five_prime_UTR 25.0%
! ACATTATAGGAGAATTTAAG+AGG - chr6_3:14316959-14316978 Msa0941090:five_prime_UTR 25.0%
! ATATTTATGATAGCCATGTA+TGG - chr6_3:14317018-14317037 Msa0941090:five_prime_UTR 25.0%
!!! GGTTTTACTAAGTTTTAAAG+GGG - chr6_3:14317105-14317124 Msa0941090:five_prime_UTR 25.0%
! TACTTAGAGATAAAGATGAA+TGG - chr6_3:14317334-14317353 Msa0941090:five_prime_UTR 25.0%
! TACAAACATGTCTATTGTAT+AGG - chr6_3:14317524-14317543 Msa0941090:five_prime_UTR 25.0%
! AGTTCATTTAAATGAAATGC+AGG + chr6_3:14317628-14317647 None:intergenic 25.0%
! TTCATTCTTTACCATGTTAA+AGG - chr6_3:14317900-14317919 Msa0941090:five_prime_UTR 25.0%
! TATTTCTTGTTCCTTTAACA+TGG + chr6_3:14317914-14317933 None:intergenic 25.0%
! ATATCAAAATCACAGCATTA+TGG + chr6_3:14317947-14317966 None:intergenic 25.0%
! TTGATTATCATTCAATTACC+TGG + chr6_3:14316080-14316099 None:intergenic 25.0%
! GTAATTGAATGATAATCAAC+TGG - chr6_3:14316081-14316100 Msa0941090:intron 25.0%
! CACCTTATAATTCTTATTGA+AGG + chr6_3:14316181-14316200 None:intergenic 25.0%
!!! ATGAGATAAAGATTTTAGAG+AGG - chr6_3:14316603-14316622 Msa0941090:intron 25.0%
! TATATAGAACTAGCAAGATT+AGG - chr6_3:14316911-14316930 Msa0941090:five_prime_UTR 25.0%
! ACATTATAGGAGAATTTAAG+AGG - chr6_3:14316959-14316978 Msa0941090:five_prime_UTR 25.0%
! ATATTTATGATAGCCATGTA+TGG - chr6_3:14317018-14317037 Msa0941090:five_prime_UTR 25.0%
!!! GGTTTTACTAAGTTTTAAAG+GGG - chr6_3:14317105-14317124 Msa0941090:five_prime_UTR 25.0%
! TACTTAGAGATAAAGATGAA+TGG - chr6_3:14317334-14317353 Msa0941090:five_prime_UTR 25.0%
! TACAAACATGTCTATTGTAT+AGG - chr6_3:14317524-14317543 Msa0941090:five_prime_UTR 25.0%
! AGTTCATTTAAATGAAATGC+AGG + chr6_3:14317628-14317647 None:intergenic 25.0%
! TTCATTCTTTACCATGTTAA+AGG - chr6_3:14317900-14317919 Msa0941090:five_prime_UTR 25.0%
! TATTTCTTGTTCCTTTAACA+TGG + chr6_3:14317914-14317933 None:intergenic 25.0%
! ATATCAAAATCACAGCATTA+TGG + chr6_3:14317947-14317966 None:intergenic 25.0%
ATTGAATGATAATCAACTGG+TGG - chr6_3:14316084-14316103 Msa0941090:intron 30.0%
TTGAATGATAATCAACTGGT+GGG - chr6_3:14316085-14316104 Msa0941090:intron 30.0%
AACAGATGACTATTTGTATG+AGG - chr6_3:14316289-14316308 Msa0941090:intron 30.0%
AAACCATATACAGATCACAT+TGG + chr6_3:14316358-14316377 None:intergenic 30.0%
!! AAAGATTTTAGAGAGGAAAG+AGG - chr6_3:14316610-14316629 Msa0941090:intron 30.0%
CCTATAATGTAGACATTGTA+TGG + chr6_3:14316949-14316968 None:intergenic 30.0%
CCATACAATGTCTACATTAT+AGG - chr6_3:14316946-14316965 Msa0941090:five_prime_UTR 30.0%
!!! TGTTTTCATGGTTTTATCCA+CGG - chr6_3:14317196-14317215 Msa0941090:five_prime_UTR 30.0%
GTAATGTCTTGAATCTTCAT+TGG - chr6_3:14317308-14317327 Msa0941090:five_prime_UTR 30.0%
! GTTTGTAGAAAATAGCTTTG+TGG + chr6_3:14317511-14317530 None:intergenic 30.0%
CATTTAAATGAAATGCAGGA+AGG + chr6_3:14317624-14317643 None:intergenic 30.0%
TGTTTACAAGGACAATAACA+TGG - chr6_3:14317825-14317844 Msa0941090:five_prime_UTR 30.0%
AATAACATGGAAGCCATAAA+TGG - chr6_3:14317838-14317857 Msa0941090:five_prime_UTR 30.0%
GATTCAAAGACTGAAATAGA+AGG + chr6_3:14317980-14317999 None:intergenic 30.0%
ATTCTGTGATTGTTCTGTTT+CGG - chr6_3:14318150-14318169 Msa0941090:five_prime_UTR 30.0%
ATTGAATGATAATCAACTGG+TGG - chr6_3:14316084-14316103 Msa0941090:intron 30.0%
TTGAATGATAATCAACTGGT+GGG - chr6_3:14316085-14316104 Msa0941090:intron 30.0%
AACAGATGACTATTTGTATG+AGG - chr6_3:14316289-14316308 Msa0941090:intron 30.0%
AAACCATATACAGATCACAT+TGG + chr6_3:14316358-14316377 None:intergenic 30.0%
!! AAAGATTTTAGAGAGGAAAG+AGG - chr6_3:14316610-14316629 Msa0941090:intron 30.0%
CCTATAATGTAGACATTGTA+TGG + chr6_3:14316949-14316968 None:intergenic 30.0%
CCATACAATGTCTACATTAT+AGG - chr6_3:14316946-14316965 Msa0941090:five_prime_UTR 30.0%
!!! TGTTTTCATGGTTTTATCCA+CGG - chr6_3:14317196-14317215 Msa0941090:five_prime_UTR 30.0%
GTAATGTCTTGAATCTTCAT+TGG - chr6_3:14317308-14317327 Msa0941090:five_prime_UTR 30.0%
! GTTTGTAGAAAATAGCTTTG+TGG + chr6_3:14317511-14317530 None:intergenic 30.0%
CATTTAAATGAAATGCAGGA+AGG + chr6_3:14317624-14317643 None:intergenic 30.0%
TGTTTACAAGGACAATAACA+TGG - chr6_3:14317825-14317844 Msa0941090:five_prime_UTR 30.0%
AATAACATGGAAGCCATAAA+TGG - chr6_3:14317838-14317857 Msa0941090:five_prime_UTR 30.0%
GATTCAAAGACTGAAATAGA+AGG + chr6_3:14317980-14317999 None:intergenic 30.0%
ATTCTGTGATTGTTCTGTTT+CGG - chr6_3:14318150-14318169 Msa0941090:five_prime_UTR 30.0%
GTGAAATTCCGAATGAGTTT+GGG - chr6_3:14316107-14316126 Msa0941090:intron 35.0%
CATTGGCAAATGTCACAAAA+AGG + chr6_3:14316341-14316360 None:intergenic 35.0%
TTGCCAATGTGATCTGTATA+TGG - chr6_3:14316352-14316371 Msa0941090:intron 35.0%
CTGTATATGGTTTCCAATTG+CGG - chr6_3:14316365-14316384 Msa0941090:intron 35.0%
AGTGGTCAAAATCAATACCT+TGG - chr6_3:14317084-14317103 Msa0941090:five_prime_UTR 35.0%
!!! TAAGTTTTAAAGGGGCCAAA+TGG - chr6_3:14317113-14317132 Msa0941090:five_prime_UTR 35.0%
ACAAGTAAAACAAGTGATGC+AGG - chr6_3:14317149-14317168 Msa0941090:five_prime_UTR 35.0%
CAAGTAAAACAAGTGATGCA+GGG - chr6_3:14317150-14317169 Msa0941090:five_prime_UTR 35.0%
AAGTAAAACAAGTGATGCAG+GGG - chr6_3:14317151-14317170 Msa0941090:five_prime_UTR 35.0%
! TGTCACTCAATCTGTTTTCA+TGG - chr6_3:14317184-14317203 Msa0941090:five_prime_UTR 35.0%
! TTTGTTACTCATTGCTGACT+AGG - chr6_3:14317285-14317304 Msa0941090:five_prime_UTR 35.0%
! TTGTTACTCATTGCTGACTA+GGG - chr6_3:14317286-14317305 Msa0941090:five_prime_UTR 35.0%
CATGTCTATTGTATAGGCTT+TGG - chr6_3:14317530-14317549 Msa0941090:five_prime_UTR 35.0%
GTGTAAAAGGTTGTCACAAA+TGG - chr6_3:14317663-14317682 Msa0941090:five_prime_UTR 35.0%
GTTGTTAACTCTTCAGTTGA+AGG + chr6_3:14317689-14317708 None:intergenic 35.0%
ATTGTCCTTGTAAACACCTA+GGG + chr6_3:14317821-14317840 None:intergenic 35.0%
TATTGTCCTTGTAAACACCT+AGG + chr6_3:14317822-14317841 None:intergenic 35.0%
TCACATGATATTGCAATGGA+AGG + chr6_3:14318091-14318110 None:intergenic 35.0%
CACATCACATGATATTGCAA+TGG + chr6_3:14318095-14318114 None:intergenic 35.0%
CATTGCAATATCATGTGATG+TGG - chr6_3:14318093-14318112 Msa0941090:five_prime_UTR 35.0%
TTCTGTGATTGTTCTGTTTC+GGG - chr6_3:14318151-14318170 Msa0941090:five_prime_UTR 35.0%
GTGAAATTCCGAATGAGTTT+GGG - chr6_3:14316107-14316126 Msa0941090:intron 35.0%
CATTGGCAAATGTCACAAAA+AGG + chr6_3:14316341-14316360 None:intergenic 35.0%
TTGCCAATGTGATCTGTATA+TGG - chr6_3:14316352-14316371 Msa0941090:intron 35.0%
CTGTATATGGTTTCCAATTG+CGG - chr6_3:14316365-14316384 Msa0941090:intron 35.0%
AGTGGTCAAAATCAATACCT+TGG - chr6_3:14317084-14317103 Msa0941090:five_prime_UTR 35.0%
!!! TAAGTTTTAAAGGGGCCAAA+TGG - chr6_3:14317113-14317132 Msa0941090:five_prime_UTR 35.0%
ACAAGTAAAACAAGTGATGC+AGG - chr6_3:14317149-14317168 Msa0941090:five_prime_UTR 35.0%
CAAGTAAAACAAGTGATGCA+GGG - chr6_3:14317150-14317169 Msa0941090:five_prime_UTR 35.0%
AAGTAAAACAAGTGATGCAG+GGG - chr6_3:14317151-14317170 Msa0941090:five_prime_UTR 35.0%
! TGTCACTCAATCTGTTTTCA+TGG - chr6_3:14317184-14317203 Msa0941090:five_prime_UTR 35.0%
! TTTGTTACTCATTGCTGACT+AGG - chr6_3:14317285-14317304 Msa0941090:five_prime_UTR 35.0%
! TTGTTACTCATTGCTGACTA+GGG - chr6_3:14317286-14317305 Msa0941090:five_prime_UTR 35.0%
CATGTCTATTGTATAGGCTT+TGG - chr6_3:14317530-14317549 Msa0941090:five_prime_UTR 35.0%
GTGTAAAAGGTTGTCACAAA+TGG - chr6_3:14317663-14317682 Msa0941090:five_prime_UTR 35.0%
GTTGTTAACTCTTCAGTTGA+AGG + chr6_3:14317689-14317708 None:intergenic 35.0%
ATTGTCCTTGTAAACACCTA+GGG + chr6_3:14317821-14317840 None:intergenic 35.0%
TATTGTCCTTGTAAACACCT+AGG + chr6_3:14317822-14317841 None:intergenic 35.0%
TCACATGATATTGCAATGGA+AGG + chr6_3:14318091-14318110 None:intergenic 35.0%
CACATCACATGATATTGCAA+TGG + chr6_3:14318095-14318114 None:intergenic 35.0%
CATTGCAATATCATGTGATG+TGG - chr6_3:14318093-14318112 Msa0941090:five_prime_UTR 35.0%
TTCTGTGATTGTTCTGTTTC+GGG - chr6_3:14318151-14318170 Msa0941090:five_prime_UTR 35.0%
GGTGAAATTCCGAATGAGTT+TGG - chr6_3:14316106-14316125 Msa0941090:intron 40.0%
TCAAGCTTCCCAAACTCATT+CGG + chr6_3:14316118-14316137 None:intergenic 40.0%
!! AAAATTAAGTTGACGCCGCA+AGG - chr6_3:14316690-14316709 Msa0941090:five_prime_UTR 40.0%
TTGCGATATTGCAGCTATTG+CGG + chr6_3:14316729-14316748 None:intergenic 40.0%
CAATAGCTGCAATATCGCAA+AGG - chr6_3:14316729-14316748 Msa0941090:five_prime_UTR 40.0%
!!! ATGGTTTTAAAATGCAGCCG+CGG + chr6_3:14316767-14316786 None:intergenic 40.0%
AAACCATGGTTCTTTGTGCT+TGG - chr6_3:14316780-14316799 Msa0941090:five_prime_UTR 40.0%
GCACTGCAAATTTCCATACA+TGG + chr6_3:14317034-14317053 None:intergenic 40.0%
ATGGAAATTTGCAGTGCTGT+TGG - chr6_3:14317037-14317056 Msa0941090:five_prime_UTR 40.0%
!! TTTTAAAGGGGCCAAATGGT+TGG - chr6_3:14317117-14317136 Msa0941090:five_prime_UTR 40.0%
GTAAAACCAGTCCAACCATT+TGG + chr6_3:14317131-14317150 None:intergenic 40.0%
!!! ATGGTTTTATCCACGGTTGT+TGG - chr6_3:14317203-14317222 Msa0941090:five_prime_UTR 40.0%
! GTCTATTGTATAGGCTTTGG+AGG - chr6_3:14317533-14317552 Msa0941090:five_prime_UTR 40.0%
GCTAACATCTGAGTTTCAGA+TGG + chr6_3:14317561-14317580 None:intergenic 40.0%
! CAACTGAATATGCGTTTTGC+AGG - chr6_3:14317705-14317724 Msa0941090:five_prime_UTR 40.0%
! AGTAGTCAGAGGTTTTCTGT+TGG - chr6_3:14317730-14317749 Msa0941090:five_prime_UTR 40.0%
! GTAGTCAGAGGTTTTCTGTT+GGG - chr6_3:14317731-14317750 Msa0941090:five_prime_UTR 40.0%
TTGTCCTTGTAAACACCTAG+GGG + chr6_3:14317820-14317839 None:intergenic 40.0%
GGTGAAATTCCGAATGAGTT+TGG - chr6_3:14316106-14316125 Msa0941090:intron 40.0%
TCAAGCTTCCCAAACTCATT+CGG + chr6_3:14316118-14316137 None:intergenic 40.0%
!! AAAATTAAGTTGACGCCGCA+AGG - chr6_3:14316690-14316709 Msa0941090:five_prime_UTR 40.0%
TTGCGATATTGCAGCTATTG+CGG + chr6_3:14316729-14316748 None:intergenic 40.0%
CAATAGCTGCAATATCGCAA+AGG - chr6_3:14316729-14316748 Msa0941090:five_prime_UTR 40.0%
!!! ATGGTTTTAAAATGCAGCCG+CGG + chr6_3:14316767-14316786 None:intergenic 40.0%
AAACCATGGTTCTTTGTGCT+TGG - chr6_3:14316780-14316799 Msa0941090:five_prime_UTR 40.0%
GCACTGCAAATTTCCATACA+TGG + chr6_3:14317034-14317053 None:intergenic 40.0%
ATGGAAATTTGCAGTGCTGT+TGG - chr6_3:14317037-14317056 Msa0941090:five_prime_UTR 40.0%
!! TTTTAAAGGGGCCAAATGGT+TGG - chr6_3:14317117-14317136 Msa0941090:five_prime_UTR 40.0%
GTAAAACCAGTCCAACCATT+TGG + chr6_3:14317131-14317150 None:intergenic 40.0%
!!! ATGGTTTTATCCACGGTTGT+TGG - chr6_3:14317203-14317222 Msa0941090:five_prime_UTR 40.0%
! GTCTATTGTATAGGCTTTGG+AGG - chr6_3:14317533-14317552 Msa0941090:five_prime_UTR 40.0%
GCTAACATCTGAGTTTCAGA+TGG + chr6_3:14317561-14317580 None:intergenic 40.0%
! CAACTGAATATGCGTTTTGC+AGG - chr6_3:14317705-14317724 Msa0941090:five_prime_UTR 40.0%
! AGTAGTCAGAGGTTTTCTGT+TGG - chr6_3:14317730-14317749 Msa0941090:five_prime_UTR 40.0%
! GTAGTCAGAGGTTTTCTGTT+GGG - chr6_3:14317731-14317750 Msa0941090:five_prime_UTR 40.0%
TTGTCCTTGTAAACACCTAG+GGG + chr6_3:14317820-14317839 None:intergenic 40.0%
CGTGATTACAGATAATGCCG+TGG + chr6_3:14316397-14316416 None:intergenic 45.0%
TTGGGTGCAGAAAACTACAG+AGG - chr6_3:14316482-14316501 Msa0941090:CDS 45.0%
!!! GCGGCTGCATTTTAAAACCA+TGG - chr6_3:14316766-14316785 Msa0941090:five_prime_UTR 45.0%
ACACCAAGCACAAAGAACCA+TGG + chr6_3:14316786-14316805 None:intergenic 45.0%
! ATTTGCAGTGCTGTTGGTAG+TGG - chr6_3:14317043-14317062 Msa0941090:five_prime_UTR 45.0%
CAGATGTTAGCGATGCAAGA+AGG - chr6_3:14317570-14317589 Msa0941090:five_prime_UTR 45.0%
GAAGGAGAGATACTTACACC+AGG + chr6_3:14317606-14317625 None:intergenic 45.0%
! TTTTGCAGGTGAGTAGTCAG+AGG - chr6_3:14317719-14317738 Msa0941090:five_prime_UTR 45.0%
GGATGACACCCAAAACACTT+CGG - chr6_3:14317752-14317771 Msa0941090:five_prime_UTR 45.0%
GATGACACCCAAAACACTTC+GGG - chr6_3:14317753-14317772 Msa0941090:five_prime_UTR 45.0%
!! TTGGGAACCCGAAGTGTTTT+GGG + chr6_3:14317763-14317782 None:intergenic 45.0%
!! ACAGAAAGAAGCATCTCTCC+AGG + chr6_3:14317787-14317806 None:intergenic 45.0%
GAGATGCTTCTTTCTGTCCA+TGG - chr6_3:14317790-14317809 Msa0941090:five_prime_UTR 45.0%
ATCACCCCTAGGTGTTTACA+AGG - chr6_3:14317813-14317832 Msa0941090:five_prime_UTR 45.0%
CGTGATTACAGATAATGCCG+TGG + chr6_3:14316397-14316416 None:intergenic 45.0%
TTGGGTGCAGAAAACTACAG+AGG - chr6_3:14316482-14316501 Msa0941090:CDS 45.0%
!!! GCGGCTGCATTTTAAAACCA+TGG - chr6_3:14316766-14316785 Msa0941090:five_prime_UTR 45.0%
ACACCAAGCACAAAGAACCA+TGG + chr6_3:14316786-14316805 None:intergenic 45.0%
! ATTTGCAGTGCTGTTGGTAG+TGG - chr6_3:14317043-14317062 Msa0941090:five_prime_UTR 45.0%
CAGATGTTAGCGATGCAAGA+AGG - chr6_3:14317570-14317589 Msa0941090:five_prime_UTR 45.0%
GAAGGAGAGATACTTACACC+AGG + chr6_3:14317606-14317625 None:intergenic 45.0%
! TTTTGCAGGTGAGTAGTCAG+AGG - chr6_3:14317719-14317738 Msa0941090:five_prime_UTR 45.0%
GGATGACACCCAAAACACTT+CGG - chr6_3:14317752-14317771 Msa0941090:five_prime_UTR 45.0%
GATGACACCCAAAACACTTC+GGG - chr6_3:14317753-14317772 Msa0941090:five_prime_UTR 45.0%
!! TTGGGAACCCGAAGTGTTTT+GGG + chr6_3:14317763-14317782 None:intergenic 45.0%
!! ACAGAAAGAAGCATCTCTCC+AGG + chr6_3:14317787-14317806 None:intergenic 45.0%
GAGATGCTTCTTTCTGTCCA+TGG - chr6_3:14317790-14317809 Msa0941090:five_prime_UTR 45.0%
ATCACCCCTAGGTGTTTACA+AGG - chr6_3:14317813-14317832 Msa0941090:five_prime_UTR 45.0%
!!! ATTTACTATTATTTATTTTA+TGG + chr6_3:14316651-14316670 None:intergenic 5.0%
!!! ATTTACTATTATTTATTTTA+TGG + chr6_3:14316651-14316670 None:intergenic 5.0%
GGTGTGTATTGTCGTCCTTG+CGG + chr6_3:14316708-14316727 None:intergenic 50.0%
TTAAAATGCAGCCGCGGTTG+TGG + chr6_3:14316761-14316780 None:intergenic 50.0%
GAAAGCTACACCAACAACCG+TGG + chr6_3:14317216-14317235 None:intergenic 50.0%
CAAGAAGGTCTTCTGACTCC+TGG - chr6_3:14317585-14317604 Msa0941090:five_prime_UTR 50.0%
!! CTTGGGAACCCGAAGTGTTT+TGG + chr6_3:14317764-14317783 None:intergenic 50.0%
!! AGAAGCATCTCTCCAGGCTT+GGG + chr6_3:14317781-14317800 None:intergenic 50.0%
!! AAGAAGCATCTCTCCAGGCT+TGG + chr6_3:14317782-14317801 None:intergenic 50.0%
AAACACCTAGGGGTGATCCA+TGG + chr6_3:14317810-14317829 None:intergenic 50.0%
GGTGTGTATTGTCGTCCTTG+CGG + chr6_3:14316708-14316727 None:intergenic 50.0%
TTAAAATGCAGCCGCGGTTG+TGG + chr6_3:14316761-14316780 None:intergenic 50.0%
GAAAGCTACACCAACAACCG+TGG + chr6_3:14317216-14317235 None:intergenic 50.0%
CAAGAAGGTCTTCTGACTCC+TGG - chr6_3:14317585-14317604 Msa0941090:five_prime_UTR 50.0%
!! CTTGGGAACCCGAAGTGTTT+TGG + chr6_3:14317764-14317783 None:intergenic 50.0%
!! AGAAGCATCTCTCCAGGCTT+GGG + chr6_3:14317781-14317800 None:intergenic 50.0%
!! AAGAAGCATCTCTCCAGGCT+TGG + chr6_3:14317782-14317801 None:intergenic 50.0%
AAACACCTAGGGGTGATCCA+TGG + chr6_3:14317810-14317829 None:intergenic 50.0%
TCCAATTGCGGATGCTGCCA+CGG - chr6_3:14316377-14316396 Msa0941090:intron 55.0%
TGCACCCAATGCCCTCGTTA+CGG + chr6_3:14316471-14316490 None:intergenic 55.0%
AAGGGGCCAAATGGTTGGAC+TGG - chr6_3:14317122-14317141 Msa0941090:five_prime_UTR 55.0%
TCTGTCCATGGATCACCCCT+AGG - chr6_3:14317802-14317821 Msa0941090:five_prime_UTR 55.0%
TCCAATTGCGGATGCTGCCA+CGG - chr6_3:14316377-14316396 Msa0941090:intron 55.0%
TGCACCCAATGCCCTCGTTA+CGG + chr6_3:14316471-14316490 None:intergenic 55.0%
AAGGGGCCAAATGGTTGGAC+TGG - chr6_3:14317122-14317141 Msa0941090:five_prime_UTR 55.0%
TCTGTCCATGGATCACCCCT+AGG - chr6_3:14317802-14317821 Msa0941090:five_prime_UTR 55.0%
AAACCGCAGCGCCGTAACGA+GGG - chr6_3:14316457-14316476 Msa0941090:CDS 60.0%
!! AGCGCCGTAACGAGGGCATT+GGG - chr6_3:14316464-14316483 Msa0941090:CDS 60.0%
AAAGGCAGCGACCACAACCG+CGG - chr6_3:14316747-14316766 Msa0941090:five_prime_UTR 60.0%
! ACACTTCGGGTTCCCAAGCC+TGG - chr6_3:14317766-14317785 Msa0941090:five_prime_UTR 60.0%
AAACCGCAGCGCCGTAACGA+GGG - chr6_3:14316457-14316476 Msa0941090:CDS 60.0%
!! AGCGCCGTAACGAGGGCATT+GGG - chr6_3:14316464-14316483 Msa0941090:CDS 60.0%
AAAGGCAGCGACCACAACCG+CGG - chr6_3:14316747-14316766 Msa0941090:five_prime_UTR 60.0%
! ACACTTCGGGTTCCCAAGCC+TGG - chr6_3:14317766-14317785 Msa0941090:five_prime_UTR 60.0%
GCCGTGGCAGCATCCGCAAT+TGG + chr6_3:14316381-14316400 None:intergenic 65.0%
GAAACCGCAGCGCCGTAACG+AGG - chr6_3:14316456-14316475 Msa0941090:CDS 65.0%
ATGCCCTCGTTACGGCGCTG+CGG + chr6_3:14316463-14316482 None:intergenic 65.0%
! CAGCGCCGTAACGAGGGCAT+TGG - chr6_3:14316463-14316482 Msa0941090:CDS 65.0%
GCCGTGGCAGCATCCGCAAT+TGG + chr6_3:14316381-14316400 None:intergenic 65.0%
GAAACCGCAGCGCCGTAACG+AGG - chr6_3:14316456-14316475 Msa0941090:CDS 65.0%
ATGCCCTCGTTACGGCGCTG+CGG + chr6_3:14316463-14316482 None:intergenic 65.0%
! CAGCGCCGTAACGAGGGCAT+TGG - chr6_3:14316463-14316482 Msa0941090:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 14316065 14318177 14316065 ID=Msa0941090;Name=Msa0941090
chr6_3 mRNA 14316065 14318177 14316065 ID=Msa0941090-mRNA-1;Parent=Msa0941090;Name=Msa0941090-mRNA-1;_AED=0.26;_eAED=0.26;_QI=1414|0.66|0.5|1|0.66|0.5|4|0|67
chr6_3 exon 14316065 14316099 14316065 ID=Msa0941090-mRNA-1:exon:4497;Parent=Msa0941090-mRNA-1
chr6_3 exon 14316383 14316515 14316383 ID=Msa0941090-mRNA-1:exon:4496;Parent=Msa0941090-mRNA-1
chr6_3 exon 14316634 14317948 14316634 ID=Msa0941090-mRNA-1:exon:4495;Parent=Msa0941090-mRNA-1
chr6_3 exon 14318043 14318177 14318043 ID=Msa0941090-mRNA-1:exon:4494;Parent=Msa0941090-mRNA-1
chr6_3 five_prime_UTR 14318043 14318177 14318043 ID=Msa0941090-mRNA-1:five_prime_utr;Parent=Msa0941090-mRNA-1
chr6_3 five_prime_UTR 14316670 14317948 14316670 ID=Msa0941090-mRNA-1:five_prime_utr;Parent=Msa0941090-mRNA-1
chr6_3 CDS 14316634 14316669 14316634 ID=Msa0941090-mRNA-1:cds;Parent=Msa0941090-mRNA-1
chr6_3 CDS 14316383 14316515 14316383 ID=Msa0941090-mRNA-1:cds;Parent=Msa0941090-mRNA-1
chr6_3 CDS 14316065 14316099 14316065 ID=Msa0941090-mRNA-1:cds;Parent=Msa0941090-mRNA-1
Gene Sequence

>Msa0941090

ATGTTAGCGATGCAAGAAGGTCTTCTGACTCCTGGTGTGAGTAGTCAGAGGTTTTCTGTTGGGATGACACCCAAAACACTTCGGGTTCCCAAGCCTGGAGAGATGCTTCTTTCTGTCCATGGATCACCCCTAGGTGTTTACAAGGACAATAACATGGAAGCCATAAATGATTGTGGATTCTGTGATTGTTCTGTTTCGGGCTGA
Protein sequence

>Msa0941090

MLAMQEGLLTPGVSSQRFSVGMTPKTLRVPKPGEMLLSVHGSPLGVYKDNNMEAINDCGFCDCSVSG*