Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276440 | XP_013462873.1 | 97.188 | 320 | 9 | 0 | 1 | 320 | 1 | 320 | 0.0 | 652 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0238720 | Msa0276440 | 0.887291 | 1.623002e-72 | -8.615850e-47 |
| Msa0276440 | Msa0557460 | 0.806462 | 8.129500e-50 | -8.615850e-47 |
| Msa0276440 | Msa1223570 | 0.804189 | 2.433723e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276440 | MtrunA17_Chr2g0288891 | 97.188 | 320 | 9 | 0 | 1 | 320 | 1 | 320 | 0.0 | 652 |
| Msa0276440 | MtrunA17_Chr4g0075211 | 78.176 | 307 | 65 | 2 | 15 | 320 | 29 | 334 | 0.0 | 520 |
| Msa0276440 | MtrunA17_Chr4g0069121 | 33.333 | 252 | 139 | 11 | 22 | 263 | 32 | 264 | 3.75e-29 | 113 |
| Msa0276440 | MtrunA17_Chr8g0381971 | 28.571 | 287 | 157 | 13 | 4 | 269 | 10 | 269 | 2.38e-22 | 94.7 |
| Msa0276440 | MtrunA17_Chr4g0058901 | 26.923 | 286 | 175 | 11 | 4 | 268 | 8 | 280 | 3.37e-21 | 92.0 |
| Msa0276440 | MtrunA17_Chr5g0415341 | 27.240 | 279 | 164 | 11 | 1 | 262 | 10 | 266 | 2.60e-19 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276440 | AT1G11915.1 | 63.467 | 323 | 112 | 5 | 3 | 320 | 8 | 329 | 1.17e-137 | 393 |
| Msa0276440 | AT3G17350.2 | 31.939 | 263 | 150 | 11 | 19 | 267 | 26 | 273 | 3.10e-24 | 100 |
| Msa0276440 | AT3G17350.1 | 32.143 | 252 | 144 | 10 | 19 | 258 | 26 | 262 | 4.78e-24 | 100 |
| Msa0276440 | AT5G50290.1 | 28.205 | 273 | 166 | 9 | 8 | 262 | 6 | 266 | 2.26e-20 | 90.1 |
| Msa0276440 | AT1G10380.2 | 28.287 | 251 | 159 | 9 | 24 | 262 | 29 | 270 | 3.01e-16 | 78.2 |
| Msa0276440 | AT1G10380.1 | 28.287 | 251 | 159 | 9 | 24 | 262 | 29 | 270 | 3.69e-16 | 78.2 |
Find 68 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAAGATTCACTTGCTTT+TGG | 0.216568 | 2_3:-8729918 | None:intergenic |
| TATGATCAAGTACCTGAATA+TGG | 0.236309 | 2_3:+8730008 | Msa0276440:CDS |
| TTGGAATTGGAGCTGGTATT+TGG | 0.243382 | 2_3:+8730774 | Msa0276440:CDS |
| CTAGTTATGCTAGTGTTTAT+TGG | 0.264957 | 2_3:+8729961 | Msa0276440:CDS |
| GTGCTAGTGTCTAAACTAAA+TGG | 0.287964 | 2_3:-8729696 | None:intergenic |
| TTCTCAGCTGCAGGGGCAAT+TGG | 0.337882 | 2_3:+8730755 | Msa0276440:CDS |
| AAGAAATTGCACAGCACAAT+AGG | 0.351853 | 2_3:+8730597 | Msa0276440:CDS |
| AGAATGTGGCATAGAATTCT+TGG | 0.373172 | 2_3:+8731141 | Msa0276440:three_prime_UTR |
| AGTGTTTATTGGAGGGATAT+TGG | 0.378579 | 2_3:+8729972 | Msa0276440:CDS |
| TGTTCACAAAACATAGGCTT+TGG | 0.380089 | 2_3:-8729789 | None:intergenic |
| TTCTGTTACCTGCGATTACA+TGG | 0.382922 | 2_3:-8730625 | None:intergenic |
| GAGAGAATGTGTCTGTAGTA+TGG | 0.384362 | 2_3:-8729525 | None:intergenic |
| CAAGATGAATCACAATGTTC+AGG | 0.392043 | 2_3:-8729816 | None:intergenic |
| TCAACTCTAATCCCATATTC+AGG | 0.393312 | 2_3:-8730020 | None:intergenic |
| GCTGCAGGGGCAATTGGAAT+TGG | 0.402123 | 2_3:+8730761 | Msa0276440:CDS |
| TTAGAATAGTCTATTATCAT+TGG | 0.412158 | 2_3:-8730846 | None:intergenic |
| TGAAGACAATGAGTTGTAAC+AGG | 0.413119 | 2_3:-8730053 | None:intergenic |
| CAAAAGCAAGTGAATCTTTG+AGG | 0.416395 | 2_3:+8729919 | Msa0276440:CDS |
| TTGTGTATTAATGTAAGTTA+AGG | 0.420734 | 2_3:+8730965 | Msa0276440:three_prime_UTR |
| CTTGAACTCAGAACACCTTC+CGG | 0.425890 | 2_3:+8729570 | Msa0276440:CDS |
| TATTCAGGTACTTGATCATA+AGG | 0.447126 | 2_3:-8730005 | None:intergenic |
| AACTCATTGTCTTCAATGTC+AGG | 0.451481 | 2_3:+8730061 | Msa0276440:CDS |
| TCCTCACATTTCCACATGAA+TGG | 0.463278 | 2_3:-8729648 | None:intergenic |
| GTTACAGCATTCTCAGCTGC+AGG | 0.468617 | 2_3:+8730746 | Msa0276440:CDS |
| TTTATGTGTTTGTGTAAGGA+TGG | 0.480529 | 2_3:+8730134 | Msa0276440:CDS |
| TATAGCTTATGTTATGAACT+TGG | 0.483428 | 2_3:-8729599 | None:intergenic |
| TATCCGTTTAGCATTGATGA+TGG | 0.488256 | 2_3:+8729492 | Msa0276440:CDS |
| CATCCATCATCAATGCTAAA+CGG | 0.488393 | 2_3:-8729495 | None:intergenic |
| ATGATCAAGTACCTGAATAT+GGG | 0.489019 | 2_3:+8730009 | Msa0276440:CDS |
| TAAATAAACTACAATAGCTA+AGG | 0.489416 | 2_3:-8730924 | None:intergenic |
| GTTATGCTAGTGTTTATTGG+AGG | 0.492582 | 2_3:+8729964 | Msa0276440:CDS |
| GGAAAATGTTCACAAAACAT+AGG | 0.507873 | 2_3:-8729795 | None:intergenic |
| ATTAATGTAAGTTAAGGTGT+TGG | 0.514314 | 2_3:+8730971 | Msa0276440:three_prime_UTR |
| TGACTAGGAGTAAAGAGAGA+AGG | 0.515959 | 2_3:-8729413 | None:intergenic |
| TACTTATGCAGACATTTACC+AGG | 0.520887 | 2_3:+8729852 | Msa0276440:CDS |
| GTTATGAACTTGGTATCGAC+CGG | 0.521862 | 2_3:-8729589 | None:intergenic |
| CTAGGAGTAAAGAGAGAAGG+AGG | 0.526442 | 2_3:-8729410 | None:intergenic |
| GGTACTTGATCATAAGGCTC+AGG | 0.533579 | 2_3:-8729999 | None:intergenic |
| TTATGCTAGTGTTTATTGGA+GGG | 0.537025 | 2_3:+8729965 | Msa0276440:CDS |
| GTTTGAACTCCACATGTGAC+TGG | 0.542667 | 2_3:-8730824 | None:intergenic |
| TCAATGTCAGGACACAATGA+AGG | 0.545706 | 2_3:+8730073 | Msa0276440:CDS |
| AAATAAACTACAATAGCTAA+GGG | 0.551100 | 2_3:-8730923 | None:intergenic |
| AACTCCACTACACATTGTAA+AGG | 0.560482 | 2_3:+8730158 | Msa0276440:CDS |
| TTTAGCATTGATGATGGATG+TGG | 0.568292 | 2_3:+8729498 | Msa0276440:CDS |
| GGGGCAATTGGAATTGGAGC+TGG | 0.569061 | 2_3:+8730767 | Msa0276440:CDS |
| AGGAAGGTCCATGTAATCGC+AGG | 0.573932 | 2_3:+8730617 | Msa0276440:CDS |
| TTACAGCATTCTCAGCTGCA+GGG | 0.578537 | 2_3:+8730747 | Msa0276440:CDS |
| CATACCTTTACAATGTGTAG+TGG | 0.589945 | 2_3:-8730162 | None:intergenic |
| CAGGACACAATGAAGGGTGG+TGG | 0.591439 | 2_3:+8730080 | Msa0276440:CDS |
| ATGAAATGATTATAAGAATG+TGG | 0.594732 | 2_3:+8731127 | Msa0276440:three_prime_UTR |
| ATGAAGGGTGGTGGAACTTG+TGG | 0.595707 | 2_3:+8730089 | Msa0276440:CDS |
| TGGAACTTGTGGATTTGATA+CGG | 0.599283 | 2_3:+8730100 | Msa0276440:CDS |
| AGCATATGCAGAACTTCTTG+TGG | 0.599981 | 2_3:+8729453 | Msa0276440:CDS |
| CAATGTCAGGACACAATGAA+GGG | 0.621855 | 2_3:+8730074 | Msa0276440:CDS |
| GGATCGGTGACAACGATGTG+AGG | 0.625024 | 2_3:-8729627 | None:intergenic |
| ACATTTCCACATGAATGGAT+CGG | 0.629048 | 2_3:-8729643 | None:intergenic |
| TCTAAACTAAATGGTCGCGT+AGG | 0.631352 | 2_3:-8729687 | None:intergenic |
| AAACTACAATAGCTAAGGGG+AGG | 0.639726 | 2_3:-8730919 | None:intergenic |
| TTGTCACCGATCCATTCATG+TGG | 0.644932 | 2_3:+8729637 | Msa0276440:CDS |
| TACAGCATTCTCAGCTGCAG+GGG | 0.645559 | 2_3:+8730748 | Msa0276440:CDS |
| AATTGCACAGCACAATAGGA+AGG | 0.647476 | 2_3:+8730601 | Msa0276440:CDS |
| TGAACTTGGTATCGACCGGA+AGG | 0.647859 | 2_3:-8729585 | None:intergenic |
| GCTACTGCACCAGTCACATG+TGG | 0.647888 | 2_3:+8730815 | Msa0276440:CDS |
| TTCATGTGGAAATGTGAGGA+TGG | 0.661162 | 2_3:+8729651 | Msa0276440:CDS |
| AATAAACTACAATAGCTAAG+GGG | 0.690011 | 2_3:-8730922 | None:intergenic |
| TCCATTCATGTGGAAATGTG+AGG | 0.693776 | 2_3:+8729647 | Msa0276440:CDS |
| ACTTATGCAGACATTTACCA+GGG | 0.706431 | 2_3:+8729853 | Msa0276440:CDS |
| TGTCAGGACACAATGAAGGG+TGG | 0.712905 | 2_3:+8730077 | Msa0276440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACACATAATTCAATAGAATA+GGG | - | chr2_3:8730200-8730219 | None:intergenic | 20.0% |
| !! | TACACATAATTCAATAGAAT+AGG | - | chr2_3:8730201-8730220 | None:intergenic | 20.0% |
| !!! | ATGATTAATTGTACTAGTTT+CGG | - | chr2_3:8730249-8730268 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGGTACAAAAGA+GGG | - | chr2_3:8730460-8730479 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGGTACAAAAG+AGG | - | chr2_3:8730461-8730480 | None:intergenic | 20.0% |
| !!! | TGAACGACTTTTTTTTTTTT+TGG | - | chr2_3:8730472-8730491 | None:intergenic | 20.0% |
| !! | TTACTGAAATACAAAAACTT+AGG | + | chr2_3:8730676-8730695 | Msa0276440:intron | 20.0% |
| !! | TTAGAATAGTCTATTATCAT+TGG | - | chr2_3:8730849-8730868 | None:intergenic | 20.0% |
| !! | AAATAAACTACAATAGCTAA+GGG | - | chr2_3:8730926-8730945 | None:intergenic | 20.0% |
| !! | TAAATAAACTACAATAGCTA+AGG | - | chr2_3:8730927-8730946 | None:intergenic | 20.0% |
| !! | TTGTGTATTAATGTAAGTTA+AGG | + | chr2_3:8730965-8730984 | Msa0276440:three_prime_UTR | 20.0% |
| !! | ATGAAATGATTATAAGAATG+TGG | + | chr2_3:8731127-8731146 | Msa0276440:three_prime_UTR | 20.0% |
| !! | ACACATAATTCAATAGAATA+GGG | - | chr2_3:8730200-8730219 | None:intergenic | 20.0% |
| !! | TACACATAATTCAATAGAAT+AGG | - | chr2_3:8730201-8730220 | None:intergenic | 20.0% |
| !!! | ATGATTAATTGTACTAGTTT+CGG | - | chr2_3:8730249-8730268 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGGTACAAAAGA+GGG | - | chr2_3:8730460-8730479 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGGTACAAAAG+AGG | - | chr2_3:8730461-8730480 | None:intergenic | 20.0% |
| !!! | TGAACGACTTTTTTTTTTTT+TGG | - | chr2_3:8730472-8730491 | None:intergenic | 20.0% |
| !! | TTACTGAAATACAAAAACTT+AGG | + | chr2_3:8730676-8730695 | Msa0276440:intron | 20.0% |
| !! | TTAGAATAGTCTATTATCAT+TGG | - | chr2_3:8730849-8730868 | None:intergenic | 20.0% |
| !! | AAATAAACTACAATAGCTAA+GGG | - | chr2_3:8730926-8730945 | None:intergenic | 20.0% |
| !! | TAAATAAACTACAATAGCTA+AGG | - | chr2_3:8730927-8730946 | None:intergenic | 20.0% |
| !! | TTGTGTATTAATGTAAGTTA+AGG | + | chr2_3:8730965-8730984 | Msa0276440:three_prime_UTR | 20.0% |
| !! | ATGAAATGATTATAAGAATG+TGG | + | chr2_3:8731127-8731146 | Msa0276440:three_prime_UTR | 20.0% |
| !!! | TTCAAGTTTTTTTTCTGAGT+CGG | - | chr2_3:8729556-8729575 | None:intergenic | 25.0% |
| ! | TATAGCTTATGTTATGAACT+TGG | - | chr2_3:8729602-8729621 | None:intergenic | 25.0% |
| !! | TGATTAATTGTACTAGTTTC+GGG | - | chr2_3:8730248-8730267 | None:intergenic | 25.0% |
| ! | TACCTATAATAGTGTTATGT+TGG | - | chr2_3:8730384-8730403 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAAGTCGTTCAC+AGG | + | chr2_3:8730473-8730492 | Msa0276440:intron | 25.0% |
| ! | ATATTCTCTCATTCAACTTA+AGG | - | chr2_3:8730545-8730564 | None:intergenic | 25.0% |
| ! | TTGATTGTCTAATGTTTGTT+TGG | + | chr2_3:8730568-8730587 | Msa0276440:intron | 25.0% |
| ! | AATAAACTACAATAGCTAAG+GGG | - | chr2_3:8730925-8730944 | None:intergenic | 25.0% |
| ! | ATTAATGTAAGTTAAGGTGT+TGG | + | chr2_3:8730971-8730990 | Msa0276440:three_prime_UTR | 25.0% |
| !! | TGTATTTAAGTCTGAGTTTT+TGG | - | chr2_3:8731094-8731113 | None:intergenic | 25.0% |
| !!! | TTCAAGTTTTTTTTCTGAGT+CGG | - | chr2_3:8729556-8729575 | None:intergenic | 25.0% |
| ! | TATAGCTTATGTTATGAACT+TGG | - | chr2_3:8729602-8729621 | None:intergenic | 25.0% |
| !! | TGATTAATTGTACTAGTTTC+GGG | - | chr2_3:8730248-8730267 | None:intergenic | 25.0% |
| ! | TACCTATAATAGTGTTATGT+TGG | - | chr2_3:8730384-8730403 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAAGTCGTTCAC+AGG | + | chr2_3:8730473-8730492 | Msa0276440:intron | 25.0% |
| ! | ATATTCTCTCATTCAACTTA+AGG | - | chr2_3:8730545-8730564 | None:intergenic | 25.0% |
| ! | TTGATTGTCTAATGTTTGTT+TGG | + | chr2_3:8730568-8730587 | Msa0276440:intron | 25.0% |
| ! | AATAAACTACAATAGCTAAG+GGG | - | chr2_3:8730925-8730944 | None:intergenic | 25.0% |
| ! | ATTAATGTAAGTTAAGGTGT+TGG | + | chr2_3:8730971-8730990 | Msa0276440:three_prime_UTR | 25.0% |
| !! | TGTATTTAAGTCTGAGTTTT+TGG | - | chr2_3:8731094-8731113 | None:intergenic | 25.0% |
| !! | ATTGAGATTTTGTTGTGACT+AGG | - | chr2_3:8729431-8729450 | None:intergenic | 30.0% |
| GGAAAATGTTCACAAAACAT+AGG | - | chr2_3:8729798-8729817 | None:intergenic | 30.0% | |
| CTAGTTATGCTAGTGTTTAT+TGG | + | chr2_3:8729961-8729980 | Msa0276440:CDS | 30.0% | |
| TTATGCTAGTGTTTATTGGA+GGG | + | chr2_3:8729965-8729984 | Msa0276440:CDS | 30.0% | |
| TATTCAGGTACTTGATCATA+AGG | - | chr2_3:8730008-8730027 | None:intergenic | 30.0% | |
| TATGATCAAGTACCTGAATA+TGG | + | chr2_3:8730008-8730027 | Msa0276440:CDS | 30.0% | |
| ATGATCAAGTACCTGAATAT+GGG | + | chr2_3:8730009-8730028 | Msa0276440:CDS | 30.0% | |
| !! | GAGTTTTATGTGTTTGTGTA+AGG | + | chr2_3:8730130-8730149 | Msa0276440:CDS | 30.0% |
| TTTATGTGTTTGTGTAAGGA+TGG | + | chr2_3:8730134-8730153 | Msa0276440:CDS | 30.0% | |
| ! | TCTCTAGAAATTAAAGCTCA+CGG | - | chr2_3:8730303-8730322 | None:intergenic | 30.0% |
| GTCCAACATAACACTATTAT+AGG | + | chr2_3:8730379-8730398 | Msa0276440:intron | 30.0% | |
| !!! | TAGTCATTGTTGTTTTGTCT+TGG | + | chr2_3:8730704-8730723 | Msa0276440:intron | 30.0% |
| !! | ATTGAGATTTTGTTGTGACT+AGG | - | chr2_3:8729431-8729450 | None:intergenic | 30.0% |
| GGAAAATGTTCACAAAACAT+AGG | - | chr2_3:8729798-8729817 | None:intergenic | 30.0% | |
| CTAGTTATGCTAGTGTTTAT+TGG | + | chr2_3:8729961-8729980 | Msa0276440:CDS | 30.0% | |
| TTATGCTAGTGTTTATTGGA+GGG | + | chr2_3:8729965-8729984 | Msa0276440:CDS | 30.0% | |
| TATTCAGGTACTTGATCATA+AGG | - | chr2_3:8730008-8730027 | None:intergenic | 30.0% | |
| TATGATCAAGTACCTGAATA+TGG | + | chr2_3:8730008-8730027 | Msa0276440:CDS | 30.0% | |
| ATGATCAAGTACCTGAATAT+GGG | + | chr2_3:8730009-8730028 | Msa0276440:CDS | 30.0% | |
| !! | GAGTTTTATGTGTTTGTGTA+AGG | + | chr2_3:8730130-8730149 | Msa0276440:CDS | 30.0% |
| TTTATGTGTTTGTGTAAGGA+TGG | + | chr2_3:8730134-8730153 | Msa0276440:CDS | 30.0% | |
| ! | TCTCTAGAAATTAAAGCTCA+CGG | - | chr2_3:8730303-8730322 | None:intergenic | 30.0% |
| GTCCAACATAACACTATTAT+AGG | + | chr2_3:8730379-8730398 | Msa0276440:intron | 30.0% | |
| !!! | TAGTCATTGTTGTTTTGTCT+TGG | + | chr2_3:8730704-8730723 | Msa0276440:intron | 30.0% |
| !! | TATCCGTTTAGCATTGATGA+TGG | + | chr2_3:8729492-8729511 | Msa0276440:CDS | 35.0% |
| CATCCATCATCAATGCTAAA+CGG | - | chr2_3:8729498-8729517 | None:intergenic | 35.0% | |
| !! | TTTAGCATTGATGATGGATG+TGG | + | chr2_3:8729498-8729517 | Msa0276440:CDS | 35.0% |
| ACATTTCCACATGAATGGAT+CGG | - | chr2_3:8729646-8729665 | None:intergenic | 35.0% | |
| GTGCTAGTGTCTAAACTAAA+TGG | - | chr2_3:8729699-8729718 | None:intergenic | 35.0% | |
| TGTTCACAAAACATAGGCTT+TGG | - | chr2_3:8729792-8729811 | None:intergenic | 35.0% | |
| CAAGATGAATCACAATGTTC+AGG | - | chr2_3:8729819-8729838 | None:intergenic | 35.0% | |
| TACTTATGCAGACATTTACC+AGG | + | chr2_3:8729852-8729871 | Msa0276440:CDS | 35.0% | |
| ACTTATGCAGACATTTACCA+GGG | + | chr2_3:8729853-8729872 | Msa0276440:CDS | 35.0% | |
| ! | CTCAAAGATTCACTTGCTTT+TGG | - | chr2_3:8729921-8729940 | None:intergenic | 35.0% |
| CAAAAGCAAGTGAATCTTTG+AGG | + | chr2_3:8729919-8729938 | Msa0276440:CDS | 35.0% | |
| GTTATGCTAGTGTTTATTGG+AGG | + | chr2_3:8729964-8729983 | Msa0276440:CDS | 35.0% | |
| AGTGTTTATTGGAGGGATAT+TGG | + | chr2_3:8729972-8729991 | Msa0276440:CDS | 35.0% | |
| TCAACTCTAATCCCATATTC+AGG | - | chr2_3:8730023-8730042 | None:intergenic | 35.0% | |
| TGAAGACAATGAGTTGTAAC+AGG | - | chr2_3:8730056-8730075 | None:intergenic | 35.0% | |
| AACTCATTGTCTTCAATGTC+AGG | + | chr2_3:8730061-8730080 | Msa0276440:CDS | 35.0% | |
| TGGAACTTGTGGATTTGATA+CGG | + | chr2_3:8730100-8730119 | Msa0276440:CDS | 35.0% | |
| AACTCCACTACACATTGTAA+AGG | + | chr2_3:8730158-8730177 | Msa0276440:CDS | 35.0% | |
| CATACCTTTACAATGTGTAG+TGG | - | chr2_3:8730165-8730184 | None:intergenic | 35.0% | |
| ! | TTGTACTAGTTTCGGGTAAA+GGG | - | chr2_3:8730241-8730260 | None:intergenic | 35.0% |
| ! | ATTGTACTAGTTTCGGGTAA+AGG | - | chr2_3:8730242-8730261 | None:intergenic | 35.0% |
| ! | GAGCTTTAATTTCTAGAGAG+CGG | + | chr2_3:8730304-8730323 | Msa0276440:intron | 35.0% |
| ATATGTGGTCTATTGTTGAC+GGG | - | chr2_3:8730352-8730371 | None:intergenic | 35.0% | |
| GATATGTGGTCTATTGTTGA+CGG | - | chr2_3:8730353-8730372 | None:intergenic | 35.0% | |
| CAATAGACCACATATCAAGA+CGG | + | chr2_3:8730357-8730376 | Msa0276440:intron | 35.0% | |
| ACAAATAAAGTCGTTCACAC+AGG | + | chr2_3:8730429-8730448 | Msa0276440:intron | 35.0% | |
| AAGAAATTGCACAGCACAAT+AGG | + | chr2_3:8730597-8730616 | Msa0276440:CDS | 35.0% | |
| !! | GTTGTTTTGTCTTGGAATTG+TGG | + | chr2_3:8730712-8730731 | Msa0276440:intron | 35.0% |
| ! | GCTCAATTCATTTTCACTGT+AGG | + | chr2_3:8731033-8731052 | Msa0276440:three_prime_UTR | 35.0% |
| AGAATGTGGCATAGAATTCT+TGG | + | chr2_3:8731141-8731160 | Msa0276440:three_prime_UTR | 35.0% | |
| !! | TATCCGTTTAGCATTGATGA+TGG | + | chr2_3:8729492-8729511 | Msa0276440:CDS | 35.0% |
| CATCCATCATCAATGCTAAA+CGG | - | chr2_3:8729498-8729517 | None:intergenic | 35.0% | |
| !! | TTTAGCATTGATGATGGATG+TGG | + | chr2_3:8729498-8729517 | Msa0276440:CDS | 35.0% |
| ACATTTCCACATGAATGGAT+CGG | - | chr2_3:8729646-8729665 | None:intergenic | 35.0% | |
| GTGCTAGTGTCTAAACTAAA+TGG | - | chr2_3:8729699-8729718 | None:intergenic | 35.0% | |
| TGTTCACAAAACATAGGCTT+TGG | - | chr2_3:8729792-8729811 | None:intergenic | 35.0% | |
| CAAGATGAATCACAATGTTC+AGG | - | chr2_3:8729819-8729838 | None:intergenic | 35.0% | |
| TACTTATGCAGACATTTACC+AGG | + | chr2_3:8729852-8729871 | Msa0276440:CDS | 35.0% | |
| ACTTATGCAGACATTTACCA+GGG | + | chr2_3:8729853-8729872 | Msa0276440:CDS | 35.0% | |
| ! | CTCAAAGATTCACTTGCTTT+TGG | - | chr2_3:8729921-8729940 | None:intergenic | 35.0% |
| CAAAAGCAAGTGAATCTTTG+AGG | + | chr2_3:8729919-8729938 | Msa0276440:CDS | 35.0% | |
| GTTATGCTAGTGTTTATTGG+AGG | + | chr2_3:8729964-8729983 | Msa0276440:CDS | 35.0% | |
| AGTGTTTATTGGAGGGATAT+TGG | + | chr2_3:8729972-8729991 | Msa0276440:CDS | 35.0% | |
| TCAACTCTAATCCCATATTC+AGG | - | chr2_3:8730023-8730042 | None:intergenic | 35.0% | |
| TGAAGACAATGAGTTGTAAC+AGG | - | chr2_3:8730056-8730075 | None:intergenic | 35.0% | |
| AACTCATTGTCTTCAATGTC+AGG | + | chr2_3:8730061-8730080 | Msa0276440:CDS | 35.0% | |
| TGGAACTTGTGGATTTGATA+CGG | + | chr2_3:8730100-8730119 | Msa0276440:CDS | 35.0% | |
| AACTCCACTACACATTGTAA+AGG | + | chr2_3:8730158-8730177 | Msa0276440:CDS | 35.0% | |
| CATACCTTTACAATGTGTAG+TGG | - | chr2_3:8730165-8730184 | None:intergenic | 35.0% | |
| ! | TTGTACTAGTTTCGGGTAAA+GGG | - | chr2_3:8730241-8730260 | None:intergenic | 35.0% |
| ! | ATTGTACTAGTTTCGGGTAA+AGG | - | chr2_3:8730242-8730261 | None:intergenic | 35.0% |
| ! | GAGCTTTAATTTCTAGAGAG+CGG | + | chr2_3:8730304-8730323 | Msa0276440:intron | 35.0% |
| ATATGTGGTCTATTGTTGAC+GGG | - | chr2_3:8730352-8730371 | None:intergenic | 35.0% | |
| GATATGTGGTCTATTGTTGA+CGG | - | chr2_3:8730353-8730372 | None:intergenic | 35.0% | |
| CAATAGACCACATATCAAGA+CGG | + | chr2_3:8730357-8730376 | Msa0276440:intron | 35.0% | |
| ACAAATAAAGTCGTTCACAC+AGG | + | chr2_3:8730429-8730448 | Msa0276440:intron | 35.0% | |
| AAGAAATTGCACAGCACAAT+AGG | + | chr2_3:8730597-8730616 | Msa0276440:CDS | 35.0% | |
| !! | GTTGTTTTGTCTTGGAATTG+TGG | + | chr2_3:8730712-8730731 | Msa0276440:intron | 35.0% |
| ! | GCTCAATTCATTTTCACTGT+AGG | + | chr2_3:8731033-8731052 | Msa0276440:three_prime_UTR | 35.0% |
| AGAATGTGGCATAGAATTCT+TGG | + | chr2_3:8731141-8731160 | Msa0276440:three_prime_UTR | 35.0% | |
| TGACTAGGAGTAAAGAGAGA+AGG | - | chr2_3:8729416-8729435 | None:intergenic | 40.0% | |
| AGCATATGCAGAACTTCTTG+TGG | + | chr2_3:8729453-8729472 | Msa0276440:CDS | 40.0% | |
| GAGAGAATGTGTCTGTAGTA+TGG | - | chr2_3:8729528-8729547 | None:intergenic | 40.0% | |
| !! | GTTATGAACTTGGTATCGAC+CGG | - | chr2_3:8729592-8729611 | None:intergenic | 40.0% |
| TCCATTCATGTGGAAATGTG+AGG | + | chr2_3:8729647-8729666 | Msa0276440:CDS | 40.0% | |
| TCCTCACATTTCCACATGAA+TGG | - | chr2_3:8729651-8729670 | None:intergenic | 40.0% | |
| TTCATGTGGAAATGTGAGGA+TGG | + | chr2_3:8729651-8729670 | Msa0276440:CDS | 40.0% | |
| TCTAAACTAAATGGTCGCGT+AGG | - | chr2_3:8729690-8729709 | None:intergenic | 40.0% | |
| GTTAGAGAAAAAGAACACCC+TGG | - | chr2_3:8729873-8729892 | None:intergenic | 40.0% | |
| TCAATGTCAGGACACAATGA+AGG | + | chr2_3:8730073-8730092 | Msa0276440:CDS | 40.0% | |
| CAATGTCAGGACACAATGAA+GGG | + | chr2_3:8730074-8730093 | Msa0276440:CDS | 40.0% | |
| AATTGCACAGCACAATAGGA+AGG | + | chr2_3:8730601-8730620 | Msa0276440:CDS | 40.0% | |
| TTCTGTTACCTGCGATTACA+TGG | - | chr2_3:8730628-8730647 | None:intergenic | 40.0% | |
| TGTCTTGGAATTGTGGTTTC+AGG | + | chr2_3:8730719-8730738 | Msa0276440:intron | 40.0% | |
| GTCTTGGAATTGTGGTTTCA+GGG | + | chr2_3:8730720-8730739 | Msa0276440:intron | 40.0% | |
| TTGGAATTGGAGCTGGTATT+TGG | + | chr2_3:8730774-8730793 | Msa0276440:CDS | 40.0% | |
| AAACTACAATAGCTAAGGGG+AGG | - | chr2_3:8730922-8730941 | None:intergenic | 40.0% | |
| TGAGAAAAATCGCAGAGGAT+TGG | - | chr2_3:8731071-8731090 | None:intergenic | 40.0% | |
| TTTGGTGAGAAAAATCGCAG+AGG | - | chr2_3:8731076-8731095 | None:intergenic | 40.0% | |
| TGACTAGGAGTAAAGAGAGA+AGG | - | chr2_3:8729416-8729435 | None:intergenic | 40.0% | |
| AGCATATGCAGAACTTCTTG+TGG | + | chr2_3:8729453-8729472 | Msa0276440:CDS | 40.0% | |
| GAGAGAATGTGTCTGTAGTA+TGG | - | chr2_3:8729528-8729547 | None:intergenic | 40.0% | |
| !! | GTTATGAACTTGGTATCGAC+CGG | - | chr2_3:8729592-8729611 | None:intergenic | 40.0% |
| TCCATTCATGTGGAAATGTG+AGG | + | chr2_3:8729647-8729666 | Msa0276440:CDS | 40.0% | |
| TCCTCACATTTCCACATGAA+TGG | - | chr2_3:8729651-8729670 | None:intergenic | 40.0% | |
| TTCATGTGGAAATGTGAGGA+TGG | + | chr2_3:8729651-8729670 | Msa0276440:CDS | 40.0% | |
| TCTAAACTAAATGGTCGCGT+AGG | - | chr2_3:8729690-8729709 | None:intergenic | 40.0% | |
| GTTAGAGAAAAAGAACACCC+TGG | - | chr2_3:8729873-8729892 | None:intergenic | 40.0% | |
| TCAATGTCAGGACACAATGA+AGG | + | chr2_3:8730073-8730092 | Msa0276440:CDS | 40.0% | |
| CAATGTCAGGACACAATGAA+GGG | + | chr2_3:8730074-8730093 | Msa0276440:CDS | 40.0% | |
| AATTGCACAGCACAATAGGA+AGG | + | chr2_3:8730601-8730620 | Msa0276440:CDS | 40.0% | |
| TTCTGTTACCTGCGATTACA+TGG | - | chr2_3:8730628-8730647 | None:intergenic | 40.0% | |
| TGTCTTGGAATTGTGGTTTC+AGG | + | chr2_3:8730719-8730738 | Msa0276440:intron | 40.0% | |
| GTCTTGGAATTGTGGTTTCA+GGG | + | chr2_3:8730720-8730739 | Msa0276440:intron | 40.0% | |
| TTGGAATTGGAGCTGGTATT+TGG | + | chr2_3:8730774-8730793 | Msa0276440:CDS | 40.0% | |
| AAACTACAATAGCTAAGGGG+AGG | - | chr2_3:8730922-8730941 | None:intergenic | 40.0% | |
| TGAGAAAAATCGCAGAGGAT+TGG | - | chr2_3:8731071-8731090 | None:intergenic | 40.0% | |
| TTTGGTGAGAAAAATCGCAG+AGG | - | chr2_3:8731076-8731095 | None:intergenic | 40.0% | |
| CTAGGAGTAAAGAGAGAAGG+AGG | - | chr2_3:8729413-8729432 | None:intergenic | 45.0% | |
| CTTGAACTCAGAACACCTTC+CGG | + | chr2_3:8729570-8729589 | Msa0276440:CDS | 45.0% | |
| TTGTCACCGATCCATTCATG+TGG | + | chr2_3:8729637-8729656 | Msa0276440:CDS | 45.0% | |
| GGTACTTGATCATAAGGCTC+AGG | - | chr2_3:8730002-8730021 | None:intergenic | 45.0% | |
| TGTTGGACCGTCTTGATATG+TGG | - | chr2_3:8730367-8730386 | None:intergenic | 45.0% | |
| TTACAGCATTCTCAGCTGCA+GGG | + | chr2_3:8730747-8730766 | Msa0276440:CDS | 45.0% | |
| GTTTGAACTCCACATGTGAC+TGG | - | chr2_3:8730827-8730846 | None:intergenic | 45.0% | |
| CTAGGAGTAAAGAGAGAAGG+AGG | - | chr2_3:8729413-8729432 | None:intergenic | 45.0% | |
| CTTGAACTCAGAACACCTTC+CGG | + | chr2_3:8729570-8729589 | Msa0276440:CDS | 45.0% | |
| TTGTCACCGATCCATTCATG+TGG | + | chr2_3:8729637-8729656 | Msa0276440:CDS | 45.0% | |
| GGTACTTGATCATAAGGCTC+AGG | - | chr2_3:8730002-8730021 | None:intergenic | 45.0% | |
| TGTTGGACCGTCTTGATATG+TGG | - | chr2_3:8730367-8730386 | None:intergenic | 45.0% | |
| TTACAGCATTCTCAGCTGCA+GGG | + | chr2_3:8730747-8730766 | Msa0276440:CDS | 45.0% | |
| GTTTGAACTCCACATGTGAC+TGG | - | chr2_3:8730827-8730846 | None:intergenic | 45.0% | |
| !! | TGAACTTGGTATCGACCGGA+AGG | - | chr2_3:8729588-8729607 | None:intergenic | 50.0% |
| TGTCAGGACACAATGAAGGG+TGG | + | chr2_3:8730077-8730096 | Msa0276440:CDS | 50.0% | |
| !! | ATGAAGGGTGGTGGAACTTG+TGG | + | chr2_3:8730089-8730108 | Msa0276440:CDS | 50.0% |
| AGGAAGGTCCATGTAATCGC+AGG | + | chr2_3:8730617-8730636 | Msa0276440:CDS | 50.0% | |
| GTTACAGCATTCTCAGCTGC+AGG | + | chr2_3:8730746-8730765 | Msa0276440:CDS | 50.0% | |
| TACAGCATTCTCAGCTGCAG+GGG | + | chr2_3:8730748-8730767 | Msa0276440:CDS | 50.0% | |
| !! | TGAACTTGGTATCGACCGGA+AGG | - | chr2_3:8729588-8729607 | None:intergenic | 50.0% |
| TGTCAGGACACAATGAAGGG+TGG | + | chr2_3:8730077-8730096 | Msa0276440:CDS | 50.0% | |
| !! | ATGAAGGGTGGTGGAACTTG+TGG | + | chr2_3:8730089-8730108 | Msa0276440:CDS | 50.0% |
| AGGAAGGTCCATGTAATCGC+AGG | + | chr2_3:8730617-8730636 | Msa0276440:CDS | 50.0% | |
| GTTACAGCATTCTCAGCTGC+AGG | + | chr2_3:8730746-8730765 | Msa0276440:CDS | 50.0% | |
| TACAGCATTCTCAGCTGCAG+GGG | + | chr2_3:8730748-8730767 | Msa0276440:CDS | 50.0% | |
| GGATCGGTGACAACGATGTG+AGG | - | chr2_3:8729630-8729649 | None:intergenic | 55.0% | |
| CAGGACACAATGAAGGGTGG+TGG | + | chr2_3:8730080-8730099 | Msa0276440:CDS | 55.0% | |
| TTCTCAGCTGCAGGGGCAAT+TGG | + | chr2_3:8730755-8730774 | Msa0276440:CDS | 55.0% | |
| GCTGCAGGGGCAATTGGAAT+TGG | + | chr2_3:8730761-8730780 | Msa0276440:CDS | 55.0% | |
| GGGGCAATTGGAATTGGAGC+TGG | + | chr2_3:8730767-8730786 | Msa0276440:CDS | 55.0% | |
| GCTACTGCACCAGTCACATG+TGG | + | chr2_3:8730815-8730834 | Msa0276440:CDS | 55.0% | |
| GGATCGGTGACAACGATGTG+AGG | - | chr2_3:8729630-8729649 | None:intergenic | 55.0% | |
| CAGGACACAATGAAGGGTGG+TGG | + | chr2_3:8730080-8730099 | Msa0276440:CDS | 55.0% | |
| TTCTCAGCTGCAGGGGCAAT+TGG | + | chr2_3:8730755-8730774 | Msa0276440:CDS | 55.0% | |
| GCTGCAGGGGCAATTGGAAT+TGG | + | chr2_3:8730761-8730780 | Msa0276440:CDS | 55.0% | |
| GGGGCAATTGGAATTGGAGC+TGG | + | chr2_3:8730767-8730786 | Msa0276440:CDS | 55.0% | |
| GCTACTGCACCAGTCACATG+TGG | + | chr2_3:8730815-8730834 | Msa0276440:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 8729377 | 8731170 | 8729377 | ID=Msa0276440;Name=Msa0276440 |
| chr2_3 | mRNA | 8729377 | 8731170 | 8729377 | ID=Msa0276440-mRNA-1;Parent=Msa0276440;Name=Msa0276440-mRNA-1;_AED=0.04;_eAED=0.04;_QI=13|1|1|1|1|1|3|302|320 |
| chr2_3 | exon | 8729377 | 8730179 | 8729377 | ID=Msa0276440-mRNA-1:exon:3934;Parent=Msa0276440-mRNA-1 |
| chr2_3 | exon | 8730594 | 8730638 | 8730594 | ID=Msa0276440-mRNA-1:exon:3935;Parent=Msa0276440-mRNA-1 |
| chr2_3 | exon | 8730741 | 8731170 | 8730741 | ID=Msa0276440-mRNA-1:exon:3936;Parent=Msa0276440-mRNA-1 |
| chr2_3 | five_prime_UTR | 8729377 | 8729389 | 8729377 | ID=Msa0276440-mRNA-1:five_prime_utr;Parent=Msa0276440-mRNA-1 |
| chr2_3 | CDS | 8729390 | 8730179 | 8729390 | ID=Msa0276440-mRNA-1:cds;Parent=Msa0276440-mRNA-1 |
| chr2_3 | CDS | 8730594 | 8730638 | 8730594 | ID=Msa0276440-mRNA-1:cds;Parent=Msa0276440-mRNA-1 |
| chr2_3 | CDS | 8730741 | 8730868 | 8730741 | ID=Msa0276440-mRNA-1:cds;Parent=Msa0276440-mRNA-1 |
| chr2_3 | three_prime_UTR | 8730869 | 8731170 | 8730869 | ID=Msa0276440-mRNA-1:three_prime_utr;Parent=Msa0276440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
