AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0934050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0934050 MtrunA17_Chr5g0447341 74.257 101 5 1 178 257 377 477 1.91e-37 139
Msa0934050 MtrunA17_Chr3g0120471 69.388 98 12 1 178 257 376 473 1.93e-34 130
Msa0934050 MtrunA17_Chr6g0454161 84.314 51 8 0 203 253 125 175 8.57e-22 93.6
Msa0934050 MtrunA17_Chr7g0271011 50.667 75 37 0 182 256 423 497 8.36e-18 83.6
Msa0934050 MtrunA17_Chr3g0144731 53.030 66 31 0 191 256 57 122 1.61e-17 78.2
Msa0934050 MtrunA17_Chr4g0074531 56.061 66 29 0 191 256 417 482 1.07e-16 80.1
Msa0934050 MtrunA17_Chr3g0141761 46.970 66 35 0 191 256 426 491 1.25e-15 77.0
Msa0934050 MtrunA17_Chr4g0035171 50.000 66 33 0 191 256 424 489 1.06e-14 74.3
Msa0934050 MtrunA17_Chr4g0033371 94.118 34 2 0 258 291 421 454 1.66e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0934050 AT5G48300.1 65.347 101 14 1 178 257 382 482 1.77e-32 125
Msa0934050 AT1G27680.1 49.315 73 36 1 191 262 414 486 6.30e-17 81.3
Msa0934050 AT5G19220.1 51.515 66 32 0 191 256 418 483 1.69e-16 80.1
Msa0934050 AT2G21590.2 48.485 66 34 0 191 256 419 484 2.71e-15 76.6
Msa0934050 AT2G21590.3 48.485 66 34 0 191 256 419 484 2.71e-15 76.6
Msa0934050 AT2G21590.5 48.485 66 34 0 191 256 419 484 2.71e-15 76.6
Msa0934050 AT2G21590.4 48.485 66 34 0 191 256 419 484 2.71e-15 76.6
Msa0934050 AT2G21590.7 48.485 66 34 0 191 256 419 484 2.71e-15 76.6
Msa0934050 AT2G21590.1 48.485 66 34 0 191 256 419 484 2.71e-15 76.6
Msa0934050 AT2G21590.6 48.485 66 34 0 191 256 419 484 2.71e-15 76.6
Msa0934050 AT4G39210.2 48.485 66 34 0 191 256 417 482 1.07e-14 74.7
Msa0934050 AT4G39210.1 48.485 66 34 0 191 256 417 482 1.07e-14 74.7
Msa0934050 AT1G05610.2 39.815 108 60 2 151 256 339 443 5.90e-12 66.2
Msa0934050 AT1G05610.1 36.066 122 73 2 137 256 319 437 6.24e-12 66.2

Find 93 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAATTTGTCTTCAAATT+TGG 0.078809 6_3:+3480036 Msa0934050:three_prime_UTR
CGCATGGAGTATAAGAAAAT+TGG 0.142610 6_3:+3475074 Msa0934050:CDS
TTTAGAAGCAAAGGAAATTA+AGG 0.221632 6_3:+3473575 Msa0934050:five_prime_UTR
CATTCAGGTGTCTTTCTTGC+TGG 0.235342 6_3:+3475179 Msa0934050:intron
GAGTAAGTTTGAGGAATTTA+AGG 0.237731 6_3:+3479599 Msa0934050:exon
AATTAAGCTTTCTTTGAATA+AGG 0.238635 6_3:-3473720 None:intergenic
AGAAAGCTTAATTGAAAGTA+TGG 0.246651 6_3:+3473730 Msa0934050:CDS
GTACAGTTTGAGAGTGTAAA+TGG 0.292311 6_3:+3479880 Msa0934050:three_prime_UTR
GCATGAGTGATGAAGCAATA+TGG 0.296665 6_3:+3477155 Msa0934050:CDS
ATTTCCTTTGCTTCTAAAAT+CGG 0.330480 6_3:-3473570 None:intergenic
GAGGAAGAAACAAGAAGAAT+TGG 0.332205 6_3:+3473771 Msa0934050:CDS
AGTTTGGAGGAATTAATTTC+AGG 0.355122 6_3:+3474627 Msa0934050:intron
GATGAACTCTTCACATTTGA+AGG 0.374057 6_3:-3479385 None:intergenic
GACAAGAGGAGATTGGAAAA+TGG 0.375067 6_3:+3479632 Msa0934050:three_prime_UTR
AGAAGAGAGAAGAGAGAAAA+GGG 0.376057 6_3:+3473403 Msa0934050:five_prime_UTR
AGGAAGGGACCGAGAGAAAC+GGG 0.390087 6_3:+3473446 Msa0934050:five_prime_UTR
CGTCTATGTTTCTTAATCTC+AGG 0.392267 6_3:+3474655 Msa0934050:CDS
GGGCTGCATTCTTGCATATC+AGG 0.392587 6_3:+3478444 Msa0934050:CDS
GTTGACAAGAATGCTAGAAT+TGG 0.404186 6_3:+3478773 Msa0934050:CDS
CGGGAGAGGAAGAAGGGTGG+AGG 0.419875 6_3:+3473332 Msa0934050:five_prime_UTR
AAGGAAGGGACCGAGAGAAA+CGG 0.420001 6_3:+3473445 Msa0934050:five_prime_UTR
ATTCAGGTGTCTTTCTTGCT+GGG 0.422182 6_3:+3475180 Msa0934050:intron
GGCAGTGTTCCAATTGGTAT+TGG 0.426491 6_3:+3478722 Msa0934050:CDS
CTCATGCTTTCTTCATCCCC+TGG 0.434251 6_3:-3477139 None:intergenic
GAGAAGAGAGAAGAGAGAAA+AGG 0.435926 6_3:+3473402 Msa0934050:five_prime_UTR
ACGGGAACGGGAGAGGAAGA+AGG 0.442996 6_3:+3473464 Msa0934050:five_prime_UTR
CATGAGTGATGAAGCAATAT+GGG 0.445860 6_3:+3477156 Msa0934050:CDS
AAACGGGAGAGGAAGAAGGG+TGG 0.445978 6_3:+3473329 Msa0934050:five_prime_UTR
GGGGTTGGGTTTGCAATTGG+AGG 0.457079 6_3:+3473752 Msa0934050:CDS
TTATCCAAGTCGACATCGTT+GGG 0.457199 6_3:-3479464 None:intergenic
TATTGAAGACACTTTGTTGA+TGG 0.458858 6_3:+3478476 Msa0934050:CDS
TGATGAAGACAAGAGGAGAT+TGG 0.460581 6_3:+3479625 Msa0934050:three_prime_UTR
CAACGATGTCGACTTGGATA+AGG 0.467770 6_3:+3479466 Msa0934050:CDS
TCTCCCGTTCCCGTTTCTCT+CGG 0.471343 6_3:-3473455 None:intergenic
GAAAGCTTAATTGAAAGTAT+GGG 0.474338 6_3:+3473731 Msa0934050:CDS
GGACCGAGAGAAACGGGAAC+GGG 0.475016 6_3:+3473452 Msa0934050:five_prime_UTR
AGAGAAACGGGAGAGGAAGA+AGG 0.475515 6_3:+3473325 Msa0934050:five_prime_UTR
AGGATGGTCGAGTAAGTTTG+AGG 0.477035 6_3:+3479590 Msa0934050:intron
GAGAGAAACGGGAACGGGAG+AGG 0.478946 6_3:+3473457 Msa0934050:five_prime_UTR
ATGTGTAAAGCTCTAATGCC+AGG 0.481314 6_3:+3477121 Msa0934050:CDS
GAGTTTCTGCCAATACCAAT+TGG 0.481399 6_3:-3478731 None:intergenic
AGAGAAAGAAGAGGGAAGGA+AGG 0.482476 6_3:+3473430 Msa0934050:five_prime_UTR
TTTAAGAAGCGCAAGTCTCT+TGG 0.484148 6_3:+3474750 Msa0934050:CDS
AGAGAGAACGGAAGAGGAGA+GGG 0.484152 6_3:+3473493 Msa0934050:five_prime_UTR
GAAGAAACAAGAAGAATTGG+AGG 0.484939 6_3:+3473774 Msa0934050:CDS
CAAATTGCATGTGGCGGTGT+AGG 0.491967 6_3:+3479759 Msa0934050:three_prime_UTR
CGGGAACGGGAGAGGAAGAA+GGG 0.495297 6_3:+3473465 Msa0934050:five_prime_UTR
AAATCTTCCATTCAGTGGTC+GGG 0.496179 6_3:+3478424 Msa0934050:intron
AGTGTTCACATGAGAAGGCT+TGG 0.497606 6_3:+3479414 Msa0934050:CDS
AACGAGAGAAAGAAGAGGGA+AGG 0.498951 6_3:+3473426 Msa0934050:five_prime_UTR
AGGGAACGAGAGAAAGAAGA+GGG 0.500039 6_3:+3473422 Msa0934050:five_prime_UTR
GGGGACGAGAGAAACGGGAG+AGG 0.500968 6_3:+3473318 None:intergenic
TTATGAAGAGGATTTGAAGC+TGG 0.505390 6_3:+3474492 Msa0934050:CDS
CATTCCCAACGATGTCGACT+TGG 0.506190 6_3:+3479460 Msa0934050:CDS
GCGACGAGAGAGAACGGAAG+AGG 0.507684 6_3:+3473487 Msa0934050:five_prime_UTR
GCATGCTGCTGAATAATTAG+TGG 0.510173 6_3:-3479827 None:intergenic
AGAAGGGCGACGAGAGAGAA+CGG 0.522224 6_3:+3473481 Msa0934050:five_prime_UTR
GCTAAAGGCAGTGTTCCAAT+TGG 0.523154 6_3:+3478716 Msa0934050:CDS
AAGGGAACGAGAGAAAGAAG+AGG 0.523683 6_3:+3473421 Msa0934050:five_prime_UTR
AAAGCTTAATTGAAAGTATG+GGG 0.524628 6_3:+3473732 Msa0934050:CDS
CTTATCCAAGTCGACATCGT+TGG 0.524700 6_3:-3479465 None:intergenic
AATGTTTAAAGACAAATCTA+CGG 0.528586 6_3:+3479701 Msa0934050:three_prime_UTR
GAGAAACGGGAGAGGAAGAA+GGG 0.529600 6_3:+3473326 Msa0934050:five_prime_UTR
GGGACCGAGAGAAACGGGAA+CGG 0.530808 6_3:+3473451 Msa0934050:five_prime_UTR
GAGAGAGAACGGAAGAGGAG+AGG 0.532551 6_3:+3473492 Msa0934050:five_prime_UTR
CAATGAGTGTTCACATGAGA+AGG 0.534579 6_3:+3479409 Msa0934050:CDS
CTGTCGAAGATGCTTGATGC+AGG 0.535667 6_3:+3478277 Msa0934050:CDS
ATCGGTGCAGATCAGAGTGT+TGG 0.543077 6_3:-3473552 None:intergenic
CCTCACACTTTCTTTAGATG+AGG 0.547825 6_3:-3479912 None:intergenic
CAACATTGAAGATTATGAAG+AGG 0.549840 6_3:+3474480 Msa0934050:CDS
TATGATATGTACTCAGAACT+TGG 0.552496 6_3:-3479782 None:intergenic
GTGTTGGACGGCGAGGTCGA+CGG 0.559179 6_3:-3473536 None:intergenic
ATTGAAGACACTTTGTTGAT+GGG 0.559915 6_3:+3478477 Msa0934050:CDS
GTCTCTTGGTGCCTTCGCGA+TGG 0.560794 6_3:+3474764 Msa0934050:CDS
GAGAAAGAAGAGGGAAGGAA+GGG 0.562446 6_3:+3473431 Msa0934050:five_prime_UTR
ACTGAATTTCAAATTGCATG+TGG 0.577471 6_3:+3479750 Msa0934050:three_prime_UTR
ATGTTTAAAGACAAATCTAC+GGG 0.579761 6_3:+3479702 Msa0934050:three_prime_UTR
AATTAAGTTCAGAGGAGTAG+AGG 0.591705 6_3:+3474444 Msa0934050:CDS
TTACACTTTAGTAGGAGATG+AGG 0.597371 6_3:-3475258 None:intergenic
AGAGCTGCAATTAAGTTCAG+AGG 0.598621 6_3:+3474436 Msa0934050:CDS
TGTGTAAAGCTCTAATGCCA+GGG 0.600360 6_3:+3477122 Msa0934050:CDS
CTGCATTCTTGCATATCAGG+AGG 0.603428 6_3:+3478447 Msa0934050:CDS
GCATCAAGCATCTTCGACAG+AGG 0.603507 6_3:-3478274 None:intergenic
AAGCTTAATTGAAAGTATGG+GGG 0.620557 6_3:+3473733 Msa0934050:CDS
GATCAGAGTGTTGGACGGCG+AGG 0.636768 6_3:-3473543 None:intergenic
AAGGCAATGATGAAGACAAG+AGG 0.640920 6_3:+3479618 Msa0934050:three_prime_UTR
TAGAATTGGAGAAAATGTGA+AGG 0.647495 6_3:+3478787 Msa0934050:CDS
CCTCATCTAAAGAAAGTGTG+AGG 0.660637 6_3:+3479912 Msa0934050:three_prime_UTR
TTGGACGGCGAGGTCGACGG+CGG 0.673722 6_3:-3473533 None:intergenic
GTGCAGATCAGAGTGTTGGA+CGG 0.676123 6_3:-3473548 None:intergenic
GTGTAAAGCTCTAATGCCAG+GGG 0.691914 6_3:+3477123 Msa0934050:CDS
GATGGGTGCAGATTATTACG+AGG 0.704264 6_3:+3478494 Msa0934050:CDS
GAATTTCAAATTGCATGTGG+CGG 0.718266 6_3:+3479753 Msa0934050:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTAATATTTATGATGT+TGG + chr6_3:3475126-3475145 Msa0934050:intron 10.0%
!!! TGGAATTTTAAAAAAATATT+TGG + chr6_3:3476302-3476321 Msa0934050:intron 10.0%
!!! TTTCTTCTATATTATTTTAA+TGG + chr6_3:3477234-3477253 Msa0934050:intron 10.0%
!!! AATAAGTTTTATATTTGTTT+TGG - chr6_3:3479241-3479260 None:intergenic 10.0%
!! AAATTGAATGTAAAAATTGT+AGG + chr6_3:3474164-3474183 Msa0934050:intron 15.0%
!! AATTGAATGTAAAAATTGTA+GGG + chr6_3:3474165-3474184 Msa0934050:intron 15.0%
!! AAAAATATTCTCAACATTAA+AGG - chr6_3:3474257-3474276 None:intergenic 15.0%
!!! TAATGTTGAGAATATTTTTT+CGG + chr6_3:3474258-3474277 Msa0934050:intron 15.0%
!!! AAATTTCATTCATTCTTTTA+TGG + chr6_3:3474345-3474364 Msa0934050:intron 15.0%
!!! GTATTGATTTATTTATTTCT+GGG + chr6_3:3475637-3475656 Msa0934050:intron 15.0%
!! TAAAATCTAATTGATATTGA+TGG + chr6_3:3475822-3475841 Msa0934050:intron 15.0%
!! AAAAAAATATTTGGTTGATT+TGG + chr6_3:3476311-3476330 Msa0934050:intron 15.0%
!! TATAATGAAAAAAATGAACT+TGG + chr6_3:3479320-3479339 Msa0934050:intron 15.0%
!!! ATCTAATATTGTTTTGTTAA+AGG + chr6_3:3479570-3479589 Msa0934050:intron 15.0%
!! TTCATTGAGAAATTGAAATT+GGG - chr6_3:3473670-3473689 None:intergenic 20.0%
!! AATTTCAATTTCTCAATGAA+GGG + chr6_3:3473670-3473689 Msa0934050:intron 20.0%
!! AATTAAGCTTTCTTTGAATA+AGG - chr6_3:3473723-3473742 None:intergenic 20.0%
!!! TGTAATTGTTTTATGATGAA+TGG + chr6_3:3474203-3474222 Msa0934050:intron 20.0%
!!! AATGTTGAGAATATTTTTTC+GGG + chr6_3:3474259-3474278 Msa0934050:intron 20.0%
!! CAATTCAAGATACAAAAAAA+AGG - chr6_3:3474593-3474612 None:intergenic 20.0%
!!! AATTTTAACTTCAATGTGAA+TGG + chr6_3:3474974-3474993 Msa0934050:intron 20.0%
!! TAAAAAACTTACACTTTAGT+AGG - chr6_3:3475269-3475288 None:intergenic 20.0%
!! ATCAATTGAAGTCAATAATT+TGG - chr6_3:3475308-3475327 None:intergenic 20.0%
!! AGTGCAATATATATATATCA+AGG + chr6_3:3475339-3475358 Msa0934050:intron 20.0%
!!! ATCTAAATTCTAAAGCATTA+TGG - chr6_3:3475432-3475451 None:intergenic 20.0%
!!! GGTATTGATTTATTTATTTC+TGG + chr6_3:3475636-3475655 Msa0934050:intron 20.0%
!!! TTAACAGACTTTAATTTTTG+TGG + chr6_3:3475912-3475931 Msa0934050:intron 20.0%
!! CGAATTTGGAAAAAAAAATT+TGG + chr6_3:3476002-3476021 Msa0934050:intron 20.0%
!! CTAAAAACATACAAAATCTA+AGG - chr6_3:3476173-3476192 None:intergenic 20.0%
!!! TGCTTTCTATTGATAATTTT+TGG + chr6_3:3476222-3476241 Msa0934050:intron 20.0%
!!! TATTGATAATTTTTGGTTTG+TGG + chr6_3:3476229-3476248 Msa0934050:intron 20.0%
!!! TTAGTTATTCTTTTGAGTTT+TGG + chr6_3:3476282-3476301 Msa0934050:intron 20.0%
!!! AAATTTTGTCTATTTTGCAA+TGG - chr6_3:3476503-3476522 None:intergenic 20.0%
!! TTAATTCAATTATGCTATGA+TGG + chr6_3:3476726-3476745 Msa0934050:intron 20.0%
!! AATGTTCATGTTGAAATATT+TGG + chr6_3:3476807-3476826 Msa0934050:intron 20.0%
!! TTCTATTCACATGTAAATAA+AGG - chr6_3:3477651-3477670 None:intergenic 20.0%
!! TTGTTCTTTATGTTATGTAA+TGG - chr6_3:3477678-3477697 None:intergenic 20.0%
!! TAAGAATTGATCAAAATAGA+AGG + chr6_3:3478031-3478050 Msa0934050:intron 20.0%
!! AGATGTCAAATATGATTAAA+TGG + chr6_3:3478355-3478374 Msa0934050:intron 20.0%
!!! ATGGATTAGAAAGTAAAATA+GGG - chr6_3:3478846-3478865 None:intergenic 20.0%
!!! TTATTTTCGCAGTTTATTAT+TGG + chr6_3:3479116-3479135 Msa0934050:intron 20.0%
!!! ATATTTGTTTTGGATAATGA+TGG - chr6_3:3479231-3479250 None:intergenic 20.0%
!!! AATATTGTTTTGTTAAAGGA+TGG + chr6_3:3479574-3479593 Msa0934050:intron 20.0%
!! AATGTTTAAAGACAAATCTA+CGG + chr6_3:3479701-3479720 Msa0934050:three_prime_UTR 20.0%
!! TTCAAATTTGTCTTCAAATT+TGG + chr6_3:3480036-3480055 Msa0934050:three_prime_UTR 20.0%
! AAATTGCATGTCGTTAAAAA+AGG + chr6_3:3473377-3473396 Msa0934050:five_prime_UTR 25.0%
! AATTGCATGTCGTTAAAAAA+GGG + chr6_3:3473378-3473397 Msa0934050:five_prime_UTR 25.0%
!!! ATTTCCTTTGCTTCTAAAAT+CGG - chr6_3:3473573-3473592 None:intergenic 25.0%
! TTTAGAAGCAAAGGAAATTA+AGG + chr6_3:3473575-3473594 Msa0934050:five_prime_UTR 25.0%
! TCATTGAGAAATTGAAATTG+GGG - chr6_3:3473669-3473688 None:intergenic 25.0%
! CTTCATTGAGAAATTGAAAT+TGG - chr6_3:3473671-3473690 None:intergenic 25.0%
! CAATTTCAATTTCTCAATGA+AGG + chr6_3:3473669-3473688 Msa0934050:intron 25.0%
! AGAAAGCTTAATTGAAAGTA+TGG + chr6_3:3473730-3473749 Msa0934050:CDS 25.0%
!! GAAAGCTTAATTGAAAGTAT+GGG + chr6_3:3473731-3473750 Msa0934050:CDS 25.0%
!! AAAGCTTAATTGAAAGTATG+GGG + chr6_3:3473732-3473751 Msa0934050:CDS 25.0%
! TGTAAATCATTTCTGTTTGA+TGG + chr6_3:3473817-3473836 Msa0934050:intron 25.0%
! TCTGTTTAAGAAGATACATA+GGG + chr6_3:3473866-3473885 Msa0934050:intron 25.0%
! AAATCAGATACAAAGGAAAA+TGG - chr6_3:3473953-3473972 None:intergenic 25.0%
!! ATTTTCCTTTGTATCTGATT+TGG + chr6_3:3473952-3473971 Msa0934050:intron 25.0%
!! TTTTACCAAATCAGATACAA+AGG - chr6_3:3473960-3473979 None:intergenic 25.0%
! AAAAAGCTATTTGACAATAC+TGG - chr6_3:3473988-3474007 None:intergenic 25.0%
! TATGATAATTTCATCCCATA+AGG + chr6_3:3474117-3474136 Msa0934050:intron 25.0%
! TTACATAGAACATACCTTAT+GGG - chr6_3:3474134-3474153 None:intergenic 25.0%
! TTTACATAGAACATACCTTA+TGG - chr6_3:3474135-3474154 None:intergenic 25.0%
!! TCTGAAAATCAATTTGTTTC+AGG + chr6_3:3474226-3474245 Msa0934050:intron 25.0%
!!! ATGTTGAGAATATTTTTTCG+GGG + chr6_3:3474260-3474279 Msa0934050:intron 25.0%
! TGTTGTGATTTAAATGAGTT+TGG + chr6_3:3474611-3474630 Msa0934050:intron 25.0%
!! TTATTCCAGTTTTTGTTACA+TGG + chr6_3:3475205-3475224 Msa0934050:CDS 25.0%
! TATATCCATGTAACAAAAAC+TGG - chr6_3:3475213-3475232 None:intergenic 25.0%
!!! AAGTTTTTTAACACTGTCAT+AGG + chr6_3:3475279-3475298 Msa0934050:intron 25.0%
!!! TTATCTAGTTGATTTTTCTG+TGG - chr6_3:3475488-3475507 None:intergenic 25.0%
!! GTTATTGAAAGTTTTGCAAA+TGG + chr6_3:3475615-3475634 Msa0934050:intron 25.0%
!!! GATTTATTTATTTCTGGGAA+TGG + chr6_3:3475642-3475661 Msa0934050:intron 25.0%
!!! CTTTAATTTTTGTGGTTTTG+TGG + chr6_3:3475920-3475939 Msa0934050:intron 25.0%
! GACAAAATTTAACACGAAAT+AGG + chr6_3:3476513-3476532 Msa0934050:intron 25.0%
!! TTCATACATCAGTTTTCAAT+AGG + chr6_3:3476648-3476667 Msa0934050:intron 25.0%
! AATTTCTGTCTTCTTTCTAA+TGG - chr6_3:3476681-3476700 None:intergenic 25.0%
!! GACAGAAATTAACTTGAAAT+AGG + chr6_3:3476691-3476710 Msa0934050:intron 25.0%
!! AATTAACTTGAAATAGGCTT+TGG + chr6_3:3476697-3476716 Msa0934050:intron 25.0%
!! ATTCAAAATTTTGTGATGCT+TGG + chr6_3:3477294-3477313 Msa0934050:intron 25.0%
!! ACATAAAGAACAAAAAGTGT+TGG + chr6_3:3477685-3477704 Msa0934050:intron 25.0%
!! GTCAATTTTTGAATCCTTTT+TGG + chr6_3:3477862-3477881 Msa0934050:intron 25.0%
! GTTGGTTAAATATACCAAAA+AGG - chr6_3:3477879-3477898 None:intergenic 25.0%
!!! AGTCATGATTGTGTTATTTT+TGG + chr6_3:3478169-3478188 Msa0934050:intron 25.0%
!! TCATTAGTGTGTATCATTTT+TGG + chr6_3:3478192-3478211 Msa0934050:intron 25.0%
!!! CATTAGTGTGTATCATTTTT+GGG + chr6_3:3478193-3478212 Msa0934050:intron 25.0%
!!! AGAAGCTGATAAAAGTTTTT+TGG + chr6_3:3478691-3478710 Msa0934050:CDS 25.0%
!!! GATGGATTAGAAAGTAAAAT+AGG - chr6_3:3478847-3478866 None:intergenic 25.0%
! TATTAAGCTTGACAAATTGT+TGG + chr6_3:3478873-3478892 Msa0934050:intron 25.0%
! ACTTAAAAAGACCAAAGATT+AGG - chr6_3:3478927-3478946 None:intergenic 25.0%
! ACACCTTCAATAAAAAATGT+CGG - chr6_3:3479052-3479071 None:intergenic 25.0%
! ATGTTTAAAGACAAATCTAC+GGG + chr6_3:3479702-3479721 Msa0934050:three_prime_UTR 25.0%
! AAGCTTAATTGAAAGTATGG+GGG + chr6_3:3473733-3473752 Msa0934050:CDS 30.0%
GTCTGTTTAAGAAGATACAT+AGG + chr6_3:3473865-3473884 Msa0934050:intron 30.0%
ATGGTTGAATTTGATCTGAA+TGG + chr6_3:3473891-3473910 Msa0934050:intron 30.0%
!!! TGTTGAGAATATTTTTTCGG+GGG + chr6_3:3474261-3474280 Msa0934050:intron 30.0%
CAACATTGAAGATTATGAAG+AGG + chr6_3:3474480-3474499 Msa0934050:CDS 30.0%
TGTGATTTAAATGAGTTTGG+AGG + chr6_3:3474614-3474633 Msa0934050:intron 30.0%
AGTTTGGAGGAATTAATTTC+AGG + chr6_3:3474627-3474646 Msa0934050:intron 30.0%
!!! CAACTCTTTCAAGTTTTTCA+TGG + chr6_3:3474681-3474700 Msa0934050:CDS 30.0%
! AAGTTTTTCATGGCATACAA+AGG + chr6_3:3474691-3474710 Msa0934050:CDS 30.0%
! TGGCATACAAAGGATTTTTA+TGG + chr6_3:3474701-3474720 Msa0934050:CDS 30.0%
!! TAGTTCTGATTATTGTGATC+TGG + chr6_3:3474854-3474873 Msa0934050:intron 30.0%
!! GCTTTGTTTATTATGCATTC+AGG + chr6_3:3475164-3475183 Msa0934050:intron 30.0%
!!! CATCTTTTTTCTCTTCTGTT+TGG + chr6_3:3475363-3475382 Msa0934050:intron 30.0%
AACTAGATAAGTCTTTGATG+AGG + chr6_3:3475498-3475517 Msa0934050:intron 30.0%
! TAAGTCTTTGATGAGGTATT+TGG + chr6_3:3475505-3475524 Msa0934050:intron 30.0%
GGTCTATGATGGTTAAAATT+TGG + chr6_3:3475588-3475607 Msa0934050:intron 30.0%
AACCATCATACACATAAGAA+AGG - chr6_3:3475684-3475703 None:intergenic 30.0%
TGTGTATGATGGTTCAAATT+TGG + chr6_3:3475690-3475709 Msa0934050:intron 30.0%
TGTTGTTAAAAGCTTTGCTT+TGG + chr6_3:3475716-3475735 Msa0934050:intron 30.0%
! GTGACATTGTAACTTTTGTA+AGG - chr6_3:3475859-3475878 None:intergenic 30.0%
!!! TGGTTTTGTGGTTAATGTTA+AGG + chr6_3:3475932-3475951 Msa0934050:intron 30.0%
! TTCAACTGAGTTTTCGAATT+TGG + chr6_3:3475988-3476007 Msa0934050:intron 30.0%
!!! TGTTTTTAGTGAGTTGTGTA+TGG + chr6_3:3476184-3476203 Msa0934050:intron 30.0%
! TCAATAGAAAGCATGAACAA+AGG - chr6_3:3476215-3476234 None:intergenic 30.0%
!!! TGATAATTTTTGGTTTGTGG+TGG + chr6_3:3476232-3476251 Msa0934050:intron 30.0%
! TGGTTGTGTGATTTTGTTAA+AGG + chr6_3:3476331-3476350 Msa0934050:intron 30.0%
ACAAATCCTTCTCTATCAAT+TGG - chr6_3:3476371-3476390 None:intergenic 30.0%
! TTGATAGAGAAGGATTTGTT+TGG + chr6_3:3476372-3476391 Msa0934050:intron 30.0%
!! GGTGGAATTTTAAGAAATGT+TGG + chr6_3:3476399-3476418 Msa0934050:intron 30.0%
TAGACCTACTGTTAGAAAAA+TGG + chr6_3:3476434-3476453 Msa0934050:intron 30.0%
!! ATGACCATTTTTCTAACAGT+AGG - chr6_3:3476441-3476460 None:intergenic 30.0%
GTAAAAATCTGAACTGTTGT+TGG + chr6_3:3476603-3476622 Msa0934050:intron 30.0%
AAAATCTGCTCTAATGTAGT+TGG + chr6_3:3476784-3476803 Msa0934050:intron 30.0%
AATCCTTATCATTTCAATCC+GGG - chr6_3:3476840-3476859 None:intergenic 30.0%
CAATCCTTATCATTTCAATC+CGG - chr6_3:3476841-3476860 None:intergenic 30.0%
! TCATAAACACATTTTACCCA+AGG - chr6_3:3477012-3477031 None:intergenic 30.0%
!!! GGCTTGCAATTTTTTCTTAT+TGG + chr6_3:3477340-3477359 Msa0934050:intron 30.0%
AACGAAAAACAACATAGAGA+TGG - chr6_3:3477444-3477463 None:intergenic 30.0%
!! GAATGTCAAATAAAGGTGTT+TGG - chr6_3:3477622-3477641 None:intergenic 30.0%
! GTGTTTGGAATGTCAAATAA+AGG - chr6_3:3477629-3477648 None:intergenic 30.0%
!! CACATGTAAATAAAGGTGTT+TGG - chr6_3:3477644-3477663 None:intergenic 30.0%
!! GAAAGTGTTTCTTCAATTCA+TGG + chr6_3:3477749-3477768 Msa0934050:intron 30.0%
TGGTACTAATGTGCATTTAA+AGG - chr6_3:3477804-3477823 None:intergenic 30.0%
TAAGTCTACTTCAATTGAGA+GGG - chr6_3:3477832-3477851 None:intergenic 30.0%
ATAAGTCTACTTCAATTGAG+AGG - chr6_3:3477833-3477852 None:intergenic 30.0%
! ATGGAAGATTTTGTAGTTCT+AGG - chr6_3:3478415-3478434 None:intergenic 30.0%
TATTGAAGACACTTTGTTGA+TGG + chr6_3:3478476-3478495 Msa0934050:CDS 30.0%
ATTGAAGACACTTTGTTGAT+GGG + chr6_3:3478477-3478496 Msa0934050:CDS 30.0%
AGAAAATCAATGTTGCAGTT+AGG - chr6_3:3478660-3478679 None:intergenic 30.0%
!!! AAAAGTTTTTTGGCTGCTAA+AGG + chr6_3:3478701-3478720 Msa0934050:CDS 30.0%
! AACAATTGCTCTTTTGATAC+GGG - chr6_3:3478756-3478775 None:intergenic 30.0%
! CAACAATTGCTCTTTTGATA+CGG - chr6_3:3478757-3478776 None:intergenic 30.0%
TAGAATTGGAGAAAATGTGA+AGG + chr6_3:3478787-3478806 Msa0934050:CDS 30.0%
! GGAATGAAAGTGTATATAGT+TGG - chr6_3:3478825-3478844 None:intergenic 30.0%
TCAAGCTTAATATGAGAAGA+TGG - chr6_3:3478865-3478884 None:intergenic 30.0%
!!! TTTTTTATTGAAGGTGTGTC+TGG + chr6_3:3479055-3479074 Msa0934050:intron 30.0%
GAAGGAAATCAGGTTATATT+CGG - chr6_3:3479186-3479205 None:intergenic 30.0%
TTGTTAAAGCTATCTGAATC+TGG - chr6_3:3479265-3479284 None:intergenic 30.0%
! GGTTATTAATTGATGACAAC+AGG + chr6_3:3479341-3479360 Msa0934050:intron 30.0%
GAGTAAGTTTGAGGAATTTA+AGG + chr6_3:3479599-3479618 Msa0934050:exon 30.0%
ACTGAATTTCAAATTGCATG+TGG + chr6_3:3479750-3479769 Msa0934050:three_prime_UTR 30.0%
TATGATATGTACTCAGAACT+TGG - chr6_3:3479785-3479804 None:intergenic 30.0%
! GAGAGTGTAAATGGAAAAAT+AGG + chr6_3:3479889-3479908 Msa0934050:three_prime_UTR 30.0%
AGAAGAGAGAAGAGAGAAAA+GGG + chr6_3:3473403-3473422 Msa0934050:five_prime_UTR 35.0%
ATTGAAATTGGGGCTGAAAA+GGG - chr6_3:3473659-3473678 None:intergenic 35.0%
AATTGAAATTGGGGCTGAAA+AGG - chr6_3:3473660-3473679 None:intergenic 35.0%
! TTAATTGAAAGTATGGGGGT+TGG + chr6_3:3473737-3473756 Msa0934050:CDS 35.0%
! TAATTGAAAGTATGGGGGTT+GGG + chr6_3:3473738-3473757 Msa0934050:CDS 35.0%
GAGGAAGAAACAAGAAGAAT+TGG + chr6_3:3473771-3473790 Msa0934050:CDS 35.0%
GAAGAAACAAGAAGAATTGG+AGG + chr6_3:3473774-3473793 Msa0934050:CDS 35.0%
TAAGAAGATACATAGGGACA+TGG + chr6_3:3473872-3473891 Msa0934050:intron 35.0%
AATTAAGTTCAGAGGAGTAG+AGG + chr6_3:3474444-3474463 Msa0934050:CDS 35.0%
! TTATGAAGAGGATTTGAAGC+TGG + chr6_3:3474492-3474511 Msa0934050:CDS 35.0%
! ATTTGAAGCTGGTGAGTTAT+GGG + chr6_3:3474503-3474522 Msa0934050:intron 35.0%
CGTCTATGTTTCTTAATCTC+AGG + chr6_3:3474655-3474674 Msa0934050:CDS 35.0%
AAAAAAACTTACCATCGCGA+AGG - chr6_3:3474778-3474797 None:intergenic 35.0%
! CAAGTTTCAGTATTTTCGCA+TGG + chr6_3:3475058-3475077 Msa0934050:intron 35.0%
CGCATGGAGTATAAGAAAAT+TGG + chr6_3:3475074-3475093 Msa0934050:CDS 35.0%
TTACACTTTAGTAGGAGATG+AGG - chr6_3:3475261-3475280 None:intergenic 35.0%
TTGGATTGATGAAGTTGAAG+AGG + chr6_3:3475402-3475421 Msa0934050:intron 35.0%
TGGATTGATGAAGTTGAAGA+GGG + chr6_3:3475403-3475422 Msa0934050:intron 35.0%
TGCCTTTCTTATGTGTATGA+TGG + chr6_3:3475679-3475698 Msa0934050:intron 35.0%
!!! TGTGTGTAGAAGTACTTTTC+TGG + chr6_3:3476063-3476082 Msa0934050:intron 35.0%
GAGCATATTGTTGATCTGAA+AGG + chr6_3:3476145-3476164 Msa0934050:intron 35.0%
!!! TAATTTTTGGTTTGTGGTGG+AGG + chr6_3:3476235-3476254 Msa0934050:intron 35.0%
TGCAAACCAATTGATAGAGA+AGG + chr6_3:3476362-3476381 Msa0934050:intron 35.0%
! GAGAAGGATTTGTTTGGTTA+TGG + chr6_3:3476378-3476397 Msa0934050:intron 35.0%
! AAGGATTTGTTTGGTTATGG+TGG + chr6_3:3476381-3476400 Msa0934050:intron 35.0%
ATTTAACACGAAATAGGCTC+TGG + chr6_3:3476519-3476538 Msa0934050:intron 35.0%
! AGAGTGTTCAGAATAAGTCA+TGG + chr6_3:3476959-3476978 Msa0934050:intron 35.0%
! AACACATTTTACCCAAGGTA+AGG - chr6_3:3477007-3477026 None:intergenic 35.0%
CATGAGTGATGAAGCAATAT+GGG + chr6_3:3477156-3477175 Msa0934050:CDS 35.0%
!!! TCTGTTTGTTGTAGCACTTT+TGG + chr6_3:3477414-3477433 Msa0934050:intron 35.0%
!!! CTGTTTGTTGTAGCACTTTT+GGG + chr6_3:3477415-3477434 Msa0934050:intron 35.0%
ATGCTAGAACTGATGATTCA+TGG - chr6_3:3477474-3477493 None:intergenic 35.0%
! ATGAATCATCAGTTCTAGCA+TGG + chr6_3:3477473-3477492 Msa0934050:intron 35.0%
ACATAGTTGCAAAACTCCAA+GGG - chr6_3:3477549-3477568 None:intergenic 35.0%
AACATAGTTGCAAAACTCCA+AGG - chr6_3:3477550-3477569 None:intergenic 35.0%
!! AAGAACAAAAAGTGTTGGTC+AGG + chr6_3:3477690-3477709 Msa0934050:intron 35.0%
CTCACATGAAAGCTAACAAT+TGG + chr6_3:3477901-3477920 Msa0934050:intron 35.0%
TATCGCAGTTGAGTCTAAAT+TGG - chr6_3:3478250-3478269 None:intergenic 35.0%
CTACAAAATCTTCCATTCAG+TGG + chr6_3:3478419-3478438 Msa0934050:intron 35.0%
AAAATCTTCCATTCAGTGGT+CGG + chr6_3:3478423-3478442 Msa0934050:intron 35.0%
ATGCAGCTCAATTCATTCAT+TGG + chr6_3:3478609-3478628 Msa0934050:intron 35.0%
!! ATTGGCTTGTGTAAGTTACA+AGG + chr6_3:3478627-3478646 Msa0934050:intron 35.0%
GTTGACAAGAATGCTAGAAT+TGG + chr6_3:3478773-3478792 Msa0934050:CDS 35.0%
AAACATAGATTGCCTTCTTG+CGG + chr6_3:3478978-3478997 Msa0934050:intron 35.0%
!!! GCACCGACATTTTTTATTGA+AGG + chr6_3:3479046-3479065 Msa0934050:intron 35.0%
TCGCAGTTTATTATTGGTGT+TGG + chr6_3:3479122-3479141 Msa0934050:intron 35.0%
TATAACCTGATTTCCTTCGT+AGG + chr6_3:3479188-3479207 Msa0934050:intron 35.0%
GATGAACTCTTCACATTTGA+AGG - chr6_3:3479388-3479407 None:intergenic 35.0%
GAATTTCAAATTGCATGTGG+CGG + chr6_3:3479753-3479772 Msa0934050:three_prime_UTR 35.0%
! GTACAGTTTGAGAGTGTAAA+TGG + chr6_3:3479880-3479899 Msa0934050:three_prime_UTR 35.0%
GAGAAGAGAGAAGAGAGAAA+AGG + chr6_3:3473402-3473421 Msa0934050:five_prime_UTR 40.0%
!!! TGCACCGATTTTAGAAGCAA+AGG + chr6_3:3473566-3473585 Msa0934050:five_prime_UTR 40.0%
GAATTTGATCTGAATGGTGC+TGG + chr6_3:3473897-3473916 Msa0934050:intron 40.0%
AGAGCTGCAATTAAGTTCAG+AGG + chr6_3:3474436-3474455 Msa0934050:CDS 40.0%
! GATTTGAAGCTGGTGAGTTA+TGG + chr6_3:3474502-3474521 Msa0934050:intron 40.0%
! TTTGAAGCTGGTGAGTTATG+GGG + chr6_3:3474504-3474523 Msa0934050:intron 40.0%
! TTTAAGAAGCGCAAGTCTCT+TGG + chr6_3:3474750-3474769 Msa0934050:CDS 40.0%
TGATGTTGGCAACTTTGTGA+TGG + chr6_3:3475140-3475159 Msa0934050:intron 40.0%
ATTCAGGTGTCTTTCTTGCT+GGG + chr6_3:3475180-3475199 Msa0934050:intron 40.0%
!! TGGCTGTTTCTTCTTGTGAT+TGG + chr6_3:3475383-3475402 Msa0934050:intron 40.0%
ACCATCATAGACCAGTCATT+GGG - chr6_3:3475581-3475600 None:intergenic 40.0%
AACCATCATAGACCAGTCAT+TGG - chr6_3:3475582-3475601 None:intergenic 40.0%
! AATGTGACTTGCCAAACTCA+GGG + chr6_3:3475770-3475789 Msa0934050:intron 40.0%
TAAGAGCAAGAGAAGAGAAG+AGG + chr6_3:3476886-3476905 Msa0934050:intron 40.0%
AAGAGCAAGAGAAGAGAAGA+GGG + chr6_3:3476887-3476906 Msa0934050:intron 40.0%
!! CAATGGCAAGAGCTTTGAAT+TGG + chr6_3:3476922-3476941 Msa0934050:intron 40.0%
!! GGTAAGGCTCTAAGCTAAAA+AGG - chr6_3:3476991-3477010 None:intergenic 40.0%
! TTTAGCTTAGAGCCTTACCT+TGG + chr6_3:3476992-3477011 Msa0934050:intron 40.0%
TTAGCTTAGAGCCTTACCTT+GGG + chr6_3:3476993-3477012 Msa0934050:intron 40.0%
! ATGTGTAAAGCTCTAATGCC+AGG + chr6_3:3477121-3477140 Msa0934050:CDS 40.0%
! TGTGTAAAGCTCTAATGCCA+GGG + chr6_3:3477122-3477141 Msa0934050:CDS 40.0%
GCATGAGTGATGAAGCAATA+TGG + chr6_3:3477155-3477174 Msa0934050:CDS 40.0%
TATGGGAAACTCTTCGTGTA+AGG + chr6_3:3477173-3477192 Msa0934050:intron 40.0%
CATAGTTGCAAAACTCCAAG+GGG - chr6_3:3477548-3477567 None:intergenic 40.0%
CTTCAATTGAGAGGGAGTTA+TGG - chr6_3:3477824-3477843 None:intergenic 40.0%
! TTAGCTTTCATGTGAGCAGT+TGG - chr6_3:3477897-3477916 None:intergenic 40.0%
TCCACTTCACAACTTATCTG+CGG - chr6_3:3477962-3477981 None:intergenic 40.0%
AAATCTTCCATTCAGTGGTC+GGG + chr6_3:3478424-3478443 Msa0934050:intron 40.0%
GAGTTTCTGCCAATACCAAT+TGG - chr6_3:3478734-3478753 None:intergenic 40.0%
GACCAAAGATTAGGAACAGA+GGG - chr6_3:3478918-3478937 None:intergenic 40.0%
AGACCAAAGATTAGGAACAG+AGG - chr6_3:3478919-3478938 None:intergenic 40.0%
TTTCCTTCGTAGGAAAGCTT+TGG + chr6_3:3479198-3479217 Msa0934050:intron 40.0%
! TGACAACAGGCAGATTTTGA+TGG + chr6_3:3479354-3479373 Msa0934050:intron 40.0%
!! CAGGCAGATTTTGATGGAAA+TGG + chr6_3:3479360-3479379 Msa0934050:intron 40.0%
CAATGAGTGTTCACATGAGA+AGG + chr6_3:3479409-3479428 Msa0934050:CDS 40.0%
TTATCCAAGTCGACATCGTT+GGG - chr6_3:3479467-3479486 None:intergenic 40.0%
AAGGCAATGATGAAGACAAG+AGG + chr6_3:3479618-3479637 Msa0934050:three_prime_UTR 40.0%
TGATGAAGACAAGAGGAGAT+TGG + chr6_3:3479625-3479644 Msa0934050:three_prime_UTR 40.0%
GACAAGAGGAGATTGGAAAA+TGG + chr6_3:3479632-3479651 Msa0934050:three_prime_UTR 40.0%
GCATGCTGCTGAATAATTAG+TGG - chr6_3:3479830-3479849 None:intergenic 40.0%
CCTCACACTTTCTTTAGATG+AGG - chr6_3:3479915-3479934 None:intergenic 40.0%
! CCTCATCTAAAGAAAGTGTG+AGG + chr6_3:3479912-3479931 Msa0934050:three_prime_UTR 40.0%
AAGGGAACGAGAGAAAGAAG+AGG + chr6_3:3473421-3473440 Msa0934050:five_prime_UTR 45.0%
AGGGAACGAGAGAAAGAAGA+GGG + chr6_3:3473422-3473441 Msa0934050:five_prime_UTR 45.0%
AACGAGAGAAAGAAGAGGGA+AGG + chr6_3:3473426-3473445 Msa0934050:five_prime_UTR 45.0%
AGAGAAAGAAGAGGGAAGGA+AGG + chr6_3:3473430-3473449 Msa0934050:five_prime_UTR 45.0%
GAGAAAGAAGAGGGAAGGAA+GGG + chr6_3:3473431-3473450 Msa0934050:five_prime_UTR 45.0%
ATTGGGGCTGAAAAGGGTTA+GGG - chr6_3:3473653-3473672 None:intergenic 45.0%
AATTGGGGCTGAAAAGGGTT+AGG - chr6_3:3473654-3473673 None:intergenic 45.0%
! TTGATCTGAATGGTGCTGGA+TGG + chr6_3:3473901-3473920 Msa0934050:intron 45.0%
CGGGGGTTATTAGTACTCTT+TGG + chr6_3:3474278-3474297 Msa0934050:intron 45.0%
CATTCAGGTGTCTTTCTTGC+TGG + chr6_3:3475179-3475198 Msa0934050:intron 45.0%
AAGCATACACTCCCAATGAC+TGG + chr6_3:3475567-3475586 Msa0934050:intron 45.0%
!! TCCCAATGACTGGTCTATGA+TGG + chr6_3:3475577-3475596 Msa0934050:intron 45.0%
! GAATGTGACTTGCCAAACTC+AGG + chr6_3:3475769-3475788 Msa0934050:intron 45.0%
! ATGTGACTTGCCAAACTCAG+GGG + chr6_3:3475771-3475790 Msa0934050:intron 45.0%
TTATCATTTCAATCCGGGCG+GGG - chr6_3:3476835-3476854 None:intergenic 45.0%
CTTATCATTTCAATCCGGGC+GGG - chr6_3:3476836-3476855 None:intergenic 45.0%
CCTTATCATTTCAATCCGGG+CGG - chr6_3:3476837-3476856 None:intergenic 45.0%
! GTGTAAAGCTCTAATGCCAG+GGG + chr6_3:3477123-3477142 Msa0934050:CDS 45.0%
ATCATGTGTATGCAACCCCT+TGG + chr6_3:3477530-3477549 Msa0934050:intron 45.0%
CCACTTCACAACTTATCTGC+GGG - chr6_3:3477961-3477980 None:intergenic 45.0%
CTGCATTCTTGCATATCAGG+AGG + chr6_3:3478447-3478466 Msa0934050:CDS 45.0%
GATGGGTGCAGATTATTACG+AGG + chr6_3:3478494-3478513 Msa0934050:CDS 45.0%
GCTAAAGGCAGTGTTCCAAT+TGG + chr6_3:3478716-3478735 Msa0934050:CDS 45.0%
GGCAGTGTTCCAATTGGTAT+TGG + chr6_3:3478722-3478741 Msa0934050:CDS 45.0%
GAACAGAGGGAGTAGATGAT+GGG - chr6_3:3478905-3478924 None:intergenic 45.0%
CTCCCTCTGTTCCTAATCTT+TGG + chr6_3:3478913-3478932 Msa0934050:intron 45.0%
CACACATGTTGCTGTCATGT+CGG - chr6_3:3479084-3479103 None:intergenic 45.0%
GCTTTCCTACGAAGGAAATC+AGG - chr6_3:3479196-3479215 None:intergenic 45.0%
AGTGTTCACATGAGAAGGCT+TGG + chr6_3:3479414-3479433 Msa0934050:CDS 45.0%
CTTATCCAAGTCGACATCGT+TGG - chr6_3:3479468-3479487 None:intergenic 45.0%
!! CAACGATGTCGACTTGGATA+AGG + chr6_3:3479466-3479485 Msa0934050:CDS 45.0%
AGGATGGTCGAGTAAGTTTG+AGG + chr6_3:3479590-3479609 Msa0934050:intron 45.0%
AGAGAAACGGGAGAGGAAGA+AGG + chr6_3:3473325-3473344 Msa0934050:five_prime_UTR 50.0%
GAGAAACGGGAGAGGAAGAA+GGG + chr6_3:3473326-3473345 Msa0934050:five_prime_UTR 50.0%
AAGGAAGGGACCGAGAGAAA+CGG + chr6_3:3473445-3473464 Msa0934050:five_prime_UTR 50.0%
AGAGAGAACGGAAGAGGAGA+GGG + chr6_3:3473493-3473512 Msa0934050:five_prime_UTR 50.0%
!! GTGCAGATCAGAGTGTTGGA+CGG - chr6_3:3473551-3473570 None:intergenic 50.0%
ATCGGTGCAGATCAGAGTGT+TGG - chr6_3:3473555-3473574 None:intergenic 50.0%
GGCTGAAAAGGGTTAGGGTT+TGG - chr6_3:3473648-3473667 None:intergenic 50.0%
ATGGGGGTTGGGTTTGCAAT+TGG + chr6_3:3473749-3473768 Msa0934050:CDS 50.0%
! CTTTGGTTCATGCAGCTGCT+TGG + chr6_3:3474295-3474314 Msa0934050:intron 50.0%
TGCTAGTAGTCCCCTGAGTT+TGG - chr6_3:3475784-3475803 None:intergenic 50.0%
! GTTTGTGGTGGAGGAGTTTC+TGG + chr6_3:3476244-3476263 Msa0934050:intron 50.0%
! GAAATATTTGGTTCCCCGCC+CGG + chr6_3:3476819-3476838 Msa0934050:intron 50.0%
CCGCCCGGATTGAAATGATA+AGG + chr6_3:3476834-3476853 Msa0934050:intron 50.0%
AGAGAAGAGAAGAGGGCTGA+AGG + chr6_3:3476894-3476913 Msa0934050:intron 50.0%
GAGAAGAGAAGAGGGCTGAA+GGG + chr6_3:3476895-3476914 Msa0934050:intron 50.0%
TGAGTGAGAAATGGGAGGGA+GGG - chr6_3:3477071-3477090 None:intergenic 50.0%
TCCCTCCCATTTCTCACTCA+CGG + chr6_3:3477071-3477090 Msa0934050:intron 50.0%
ACGACCCGTGAGTGAGAAAT+GGG - chr6_3:3477079-3477098 None:intergenic 50.0%
AACGACCCGTGAGTGAGAAA+TGG - chr6_3:3477080-3477099 None:intergenic 50.0%
CTCATGCTTTCTTCATCCCC+TGG - chr6_3:3477142-3477161 None:intergenic 50.0%
AGGCACAGAGAAGGATAGAC+TGG + chr6_3:3477710-3477729 Msa0934050:intron 50.0%
CCCGCAGATAAGTTGTGAAG+TGG + chr6_3:3477958-3477977 Msa0934050:intron 50.0%
GCATCAAGCATCTTCGACAG+AGG - chr6_3:3478277-3478296 None:intergenic 50.0%
CTGTCGAAGATGCTTGATGC+AGG + chr6_3:3478277-3478296 Msa0934050:CDS 50.0%
GGGCTGCATTCTTGCATATC+AGG + chr6_3:3478444-3478463 Msa0934050:CDS 50.0%
GGAACAGAGGGAGTAGATGA+TGG - chr6_3:3478906-3478925 None:intergenic 50.0%
CAGCCAAAGCTTTCCTACGA+AGG - chr6_3:3479204-3479223 None:intergenic 50.0%
! CATTCCCAACGATGTCGACT+TGG + chr6_3:3479460-3479479 Msa0934050:CDS 50.0%
CAAATTGCATGTGGCGGTGT+AGG + chr6_3:3479759-3479778 Msa0934050:three_prime_UTR 50.0%
AAACGGGAGAGGAAGAAGGG+TGG + chr6_3:3473329-3473348 Msa0934050:five_prime_UTR 55.0%
AGGAAGGGACCGAGAGAAAC+GGG + chr6_3:3473446-3473465 Msa0934050:five_prime_UTR 55.0%
TCTCCCGTTCCCGTTTCTCT+CGG - chr6_3:3473458-3473477 None:intergenic 55.0%
AGAAGGGCGACGAGAGAGAA+CGG + chr6_3:3473481-3473500 Msa0934050:five_prime_UTR 55.0%
GAGAGAGAACGGAAGAGGAG+AGG + chr6_3:3473492-3473511 Msa0934050:five_prime_UTR 55.0%
GGGGTTGGGTTTGCAATTGG+AGG + chr6_3:3473752-3473771 Msa0934050:CDS 55.0%
!! TGGTGGAGGAGTTTCTGGCA+TGG + chr6_3:3476249-3476268 Msa0934050:intron 55.0%
GAGGGCTGAAGGGATAGCAA+TGG + chr6_3:3476905-3476924 Msa0934050:intron 55.0%
AAATGGGAGGGAGGGAAGGA+GGG - chr6_3:3477063-3477082 None:intergenic 55.0%
TGAGAAATGGGAGGGAGGGA+AGG - chr6_3:3477067-3477086 None:intergenic 55.0%
GTGAGTGAGAAATGGGAGGG+AGG - chr6_3:3477072-3477091 None:intergenic 55.0%
CCCGTGAGTGAGAAATGGGA+GGG - chr6_3:3477075-3477094 None:intergenic 55.0%
CCCTCCCATTTCTCACTCAC+GGG + chr6_3:3477072-3477091 Msa0934050:intron 55.0%
ACCCGTGAGTGAGAAATGGG+AGG - chr6_3:3477076-3477095 None:intergenic 55.0%
! GTGTTGGTCAGGCACAGAGA+AGG + chr6_3:3477701-3477720 Msa0934050:intron 55.0%
AATGCAGCCCGACCACTGAA+TGG - chr6_3:3478434-3478453 None:intergenic 55.0%
CACACTACGATGCCGCAAGA+AGG - chr6_3:3478993-3479012 None:intergenic 55.0%
GGGACCGAGAGAAACGGGAA+CGG + chr6_3:3473451-3473470 Msa0934050:five_prime_UTR 60.0%
GGACCGAGAGAAACGGGAAC+GGG + chr6_3:3473452-3473471 Msa0934050:five_prime_UTR 60.0%
GAGAGAAACGGGAACGGGAG+AGG + chr6_3:3473457-3473476 Msa0934050:five_prime_UTR 60.0%
ACGGGAACGGGAGAGGAAGA+AGG + chr6_3:3473464-3473483 Msa0934050:five_prime_UTR 60.0%
CGGGAACGGGAGAGGAAGAA+GGG + chr6_3:3473465-3473484 Msa0934050:five_prime_UTR 60.0%
GCGACGAGAGAGAACGGAAG+AGG + chr6_3:3473487-3473506 Msa0934050:five_prime_UTR 60.0%
!! GATCAGAGTGTTGGACGGCG+AGG - chr6_3:3473546-3473565 None:intergenic 60.0%
!! GTCTCTTGGTGCCTTCGCGA+TGG + chr6_3:3474764-3474783 Msa0934050:CDS 60.0%
AATGGGAGGGAGGGAAGGAG+GGG - chr6_3:3477062-3477081 None:intergenic 60.0%
GAAATGGGAGGGAGGGAAGG+AGG - chr6_3:3477064-3477083 None:intergenic 60.0%
CGGGAGAGGAAGAAGGGTGG+AGG + chr6_3:3473332-3473351 Msa0934050:five_prime_UTR 65.0%
GTGTTGGACGGCGAGGTCGA+CGG - chr6_3:3473539-3473558 None:intergenic 65.0%
TTGGACGGCGAGGTCGACGG+CGG - chr6_3:3473536-3473555 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 3473320 3480082 3473320 ID=Msa0934050;Name=Msa0934050
chr6_3 mRNA 3473320 3480082 3473320 ID=Msa0934050-mRNA-1;Parent=Msa0934050;Name=Msa0934050-mRNA-1;_AED=0.32;_eAED=0.32;_QI=296|0.45|0.66|0.91|0.54|0.66|12|478|302
chr6_3 exon 3473320 3473596 3473320 ID=Msa0934050-mRNA-1:exon:1109;Parent=Msa0934050-mRNA-1
chr6_3 exon 3473691 3473795 3473691 ID=Msa0934050-mRNA-1:exon:1110;Parent=Msa0934050-mRNA-1
chr6_3 exon 3474426 3474513 3474426 ID=Msa0934050-mRNA-1:exon:1111;Parent=Msa0934050-mRNA-1
chr6_3 exon 3474636 3474785 3474636 ID=Msa0934050-mRNA-1:exon:1112;Parent=Msa0934050-mRNA-1
chr6_3 exon 3475068 3475113 3475068 ID=Msa0934050-mRNA-1:exon:1113;Parent=Msa0934050-mRNA-1
chr6_3 exon 3475186 3475276 3475186 ID=Msa0934050-mRNA-1:exon:1114;Parent=Msa0934050-mRNA-1
chr6_3 exon 3477120 3477189 3477120 ID=Msa0934050-mRNA-1:exon:1115;Parent=Msa0934050-mRNA-1
chr6_3 exon 3478256 3478298 3478256 ID=Msa0934050-mRNA-1:exon:1116;Parent=Msa0934050-mRNA-1
chr6_3 exon 3478439 3478515 3478439 ID=Msa0934050-mRNA-1:exon:1117;Parent=Msa0934050-mRNA-1
chr6_3 exon 3478689 3478808 3478689 ID=Msa0934050-mRNA-1:exon:1118;Parent=Msa0934050-mRNA-1
chr6_3 exon 3479363 3479487 3479363 ID=Msa0934050-mRNA-1:exon:1119;Parent=Msa0934050-mRNA-1
chr6_3 exon 3479592 3480082 3479592 ID=Msa0934050-mRNA-1:exon:1120;Parent=Msa0934050-mRNA-1
chr6_3 five_prime_UTR 3473320 3473596 3473320 ID=Msa0934050-mRNA-1:five_prime_utr;Parent=Msa0934050-mRNA-1
chr6_3 five_prime_UTR 3473691 3473709 3473691 ID=Msa0934050-mRNA-1:five_prime_utr;Parent=Msa0934050-mRNA-1
chr6_3 CDS 3473710 3473795 3473710 ID=Msa0934050-mRNA-1:cds;Parent=Msa0934050-mRNA-1
chr6_3 CDS 3474426 3474513 3474426 ID=Msa0934050-mRNA-1:cds;Parent=Msa0934050-mRNA-1
chr6_3 CDS 3474636 3474785 3474636 ID=Msa0934050-mRNA-1:cds;Parent=Msa0934050-mRNA-1
chr6_3 CDS 3475068 3475113 3475068 ID=Msa0934050-mRNA-1:cds;Parent=Msa0934050-mRNA-1
chr6_3 CDS 3475186 3475276 3475186 ID=Msa0934050-mRNA-1:cds;Parent=Msa0934050-mRNA-1
chr6_3 CDS 3477120 3477189 3477120 ID=Msa0934050-mRNA-1:cds;Parent=Msa0934050-mRNA-1
chr6_3 CDS 3478256 3478298 3478256 ID=Msa0934050-mRNA-1:cds;Parent=Msa0934050-mRNA-1
chr6_3 CDS 3478439 3478515 3478439 ID=Msa0934050-mRNA-1:cds;Parent=Msa0934050-mRNA-1
chr6_3 CDS 3478689 3478808 3478689 ID=Msa0934050-mRNA-1:cds;Parent=Msa0934050-mRNA-1
chr6_3 CDS 3479363 3479487 3479363 ID=Msa0934050-mRNA-1:cds;Parent=Msa0934050-mRNA-1
chr6_3 CDS 3479592 3479604 3479592 ID=Msa0934050-mRNA-1:cds;Parent=Msa0934050-mRNA-1
chr6_3 three_prime_UTR 3479605 3480082 3479605 ID=Msa0934050-mRNA-1:three_prime_utr;Parent=Msa0934050-mRNA-1
Gene Sequence

>Msa0934050

ATGTGTGTCTCCTTATTCAAAGAAAGCTTAATTGAAAGTATGGGGGTTGGGTTTGCAATTGGAGGAAGAAACAAGAAGAATTGGAGTGCATATGATAGAGCTGCAATTAAGTTCAGAGGAGTAGAGGCAGATATAAATTTCAACATTGAAGATTATGAAGAGGATTTGAAGCTGGAATTAATTTCAGGTAGTTCGTCTATGTTTCTTAATCTCAGGTATCAACTCTTTCAAGTTTTTCATGGCATACAAAGGATTTTTATGGTCAACGATGAGCTTCTTCTGCAAGTATTTAAGAAGCGCAAGTCTCTTGGTGCCTTCGCGATGTATTTTCGCATGGAGTATAAGAAAATTGGATCTAAAGCTTTTATTTGTGTCTTTCTTGCTGGGAGTTATTCCAGTTTTTGTTACATGGATATATTCAGAATACTTAAGTACAAAAGAACCTCATCTCCTACTAAAGTAATGTGTAAAGCTCTAATGCCAGGGGATGAAGAAAGCATGAGTGATGAAGCAATATGGGAAACTCTTCGTACTCAACTGCGATATTTGCCTCTGTCGAAGATGCTTGATGCAGTGGTCGGGCTGCATTCTTGCATATCAGGAGGTGCGATTATTGAAGACACTTTGTTGATGGGTGCAGATTATTACGAGACAGAAGCTGATAAAAGTTTTTTGGCTGCTAAAGGCAGTGTTCCAATTGGTATTGGCAGAAACTCCCGTATCAAAAGAGCAATTGTTGACAAGAATGCTAGAATTGGAGAAAATGTGAAGGCAGATTTTGATGGAAATGGCACCTTCAAATGTGAAGAGTTCATCACAATGAGTGTTCACATGAGAAGGCTTGGAAATGATGAGCATCTCACAGAAGCATTCCCAACGATGTCGACTTGGATAAGGATGGTCGAGTAA
Protein sequence

>Msa0934050

MCVSLFKESLIESMGVGFAIGGRNKKNWSAYDRAAIKFRGVEADINFNIEDYEEDLKLELISGSSSMFLNLRYQLFQVFHGIQRIFMVNDELLLQVFKKRKSLGAFAMYFRMEYKKIGSKAFICVFLAGSYSSFCYMDIFRILKYKRTSSPTKVMCKALMPGDEESMSDEAIWETLRTQLRYLPLSKMLDAVVGLHSCISGGAIIEDTLLMGADYYETEADKSFLAAKGSVPIGIGRNSRIKRAIVDKNARIGENVKADFDGNGTFKCEEFITMSVHMRRLGNDEHLTEAFPTMSTWIRMVE*