AlfalfaGEDB | Msa0278750

M. sativa cultivar zhongmu-4 / Msa0278750

KEGG: -
GO: GO:0000902 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016049 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071840 GO:0071944 GO:1901700
PFAM: PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0278750	XP_003594535.2	98.126	854	16	0	1	854	2	855	0.0	1736

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0278750	sp\|Q9SA72\|Y1357_ARATH	65.079	819	274	7	3	818	7	816	0.0	1112

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0278750	G7IKV5	98.126	854	16	0	1	854	2	855	0.0	1736

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0184500	Msa0278750	0.820454	6.802288e-53	-8.615850e-47
Msa0278750	Msa0318690	0.936450	1.702598e-97	-8.615850e-47
Msa0278750	Msa1145300	0.823245	1.536833e-53	-8.615850e-47
Msa0278750	Msa1463950	0.918822	9.694689e-87	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0278750	MtrunA17_Chr2g0292501	98.126	854	16	0	1	854	2	855	1733
Msa0278750	MtrunA17_Chr2g0318301	46.389	817	398	15	10	816	14	800	673
Msa0278750	MtrunA17_Chr8g0352381	45.605	785	381	17	26	800	62	810	659
Msa0278750	MtrunA17_Chr4g0030441	45.696	790	384	18	30	808	35	790	647
Msa0278750	MtrunA17_Chr7g0245131	44.431	826	401	19	9	799	13	815	625
Msa0278750	MtrunA17_Chr7g0274261	42.575	862	426	23	11	837	21	848	612
Msa0278750	MtrunA17_Chr1g0190581	42.178	863	423	22	10	835	7	830	605
Msa0278750	MtrunA17_Chr2g0327671	44.515	793	392	20	30	808	35	793	603
Msa0278750	MtrunA17_Chr6g0468691	43.434	792	381	21	30	799	30	776	580
Msa0278750	MtrunA17_Chr1g0202711	41.582	784	396	17	30	799	48	783	575

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0278750	AT1G30570.1	65.079	819	274	7	3	818	7	816	1112
Msa0278750	AT5G54380.1	45.157	795	398	14	30	810	33	803	647
Msa0278750	AT3G46290.1	45.096	785	384	13	30	808	32	775	644
Msa0278750	AT4G39110.1	45.202	792	392	15	29	811	58	816	643
Msa0278750	AT5G59700.1	44.459	785	388	11	30	810	32	772	637
Msa0278750	AT3G51550.1	43.696	817	402	18	17	799	24	816	632
Msa0278750	AT2G21480.1	45.120	789	375	19	29	800	57	804	629
Msa0278750	AT5G28680.1	43.276	818	409	21	9	799	11	800	606
Msa0278750	AT5G28680.2	43.276	818	409	21	9	799	11	800	606
Msa0278750	AT3G04690.1	41.793	859	429	24	27	854	27	845	602

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Find 189 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCACTGTCGGTGCCA+AGG	0.555727	2_3:+11854548	Msa0278750:CDS
AAACGGGAATCTCGCCTATG+TGG	0.579612	2_3:+11854314	Msa0278750:CDS
AAAGCAAAAGTTATTTGGAT+TGG	0.384824	2_3:+11854375	Msa0278750:CDS
AAAGTTATTTGGATTGGAGT+AGG	0.492064	2_3:+11854381	Msa0278750:CDS
AAATAATTTCGACGACAGTT+TGG	0.388132	2_3:+11854659	Msa0278750:CDS
AAATCAATTCTTATAAATTG+TGG	0.477228	2_3:+11853187	Msa0278750:CDS
AAATCAGATGTTTACTCTTT+TGG	0.187029	2_3:+11855209	Msa0278750:CDS
AACAACGGGAACAATCTCAA+TGG	0.593472	2_3:-11853677	None:intergenic
AACAGCACTGTCGGTGCCAA+GGG	0.549995	2_3:+11854549	Msa0278750:CDS
AACGCGAACCTGCAGAATTC+TGG	0.280820	2_3:+11853544	Msa0278750:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTCTTCTGTGAATGTTGA+TGG	+	chr2_3:11853214-11853233	Msa0278750:CDS	30.0%
TACACTATCAAAGATGTTCA+TGG	+	chr2_3:11853385-11853404	Msa0278750:CDS	30.0%
CAATGGTATGAAACTATTGT+CGG	+	chr2_3:11853489-11853508	Msa0278750:CDS	30.0%
TATATTCTGGATGTCAATGA+TGG	+	chr2_3:11853601-11853620	Msa0278750:CDS	30.0%
ATGTATAGGTTAAATGTTGG+TGG	+	chr2_3:11853775-11853794	Msa0278750:CDS	30.0%
TTCTTTGAATGATACTTCAG+TGG	+	chr2_3:11853918-11853937	Msa0278750:CDS	30.0%
AAATAATTTCGACGACAGTT+TGG	+	chr2_3:11854659-11854678	Msa0278750:CDS	30.0%
AGAGTAAACATCTGATTTCT+CGG	-	chr2_3:11855207-11855226	None:intergenic	30.0%
ATCAAATCAATCTTGCAGAA+TGG	+	chr2_3:11855291-11855310	Msa0278750:CDS	30.0%
TCAAATCAATCTTGCAGAAT+GGG	+	chr2_3:11855292-11855311	Msa0278750:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	11853109	11855673	11853109	ID=Msa0278750;Name=Msa0278750
chr2_3	mRNA	11853109	11855673	11853109	ID=Msa0278750-mRNA-1;Parent=Msa0278750;Name=Msa0278750-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|854
chr2_3	exon	11853109	11855673	11853109	ID=Msa0278750-mRNA-1:exon:5313;Parent=Msa0278750-mRNA-1
chr2_3	CDS	11853109	11855673	11853109	ID=Msa0278750-mRNA-1:cds;Parent=Msa0278750-mRNA-1

Gene Sequence

>Msa0278750

ATGGGGAAGGTTATTGAGGAAGGACTATTGATTGTGTTGATTTTGATGATTGTGAGCAAAAATGTAGAGGCTCAACAAAAATCAATTCTTATAAATTGTGGTTCAAATTCTTCTGTGAATGTTGATGGTAGGAAATGGATTGGTGATATGGCACCTAATAACAATGTTACTCTTAGTTCTTCTCCTGGTGTTGTTGCTTCCACTGATGGATTAAGTGGATATTCAATCTATGAGCCACTTTATAAAACAGCTAGAATTTTCACATCTTCTTTGAATTACACTATCAAAGATGTTCATGGAAACTATTTTGTTAGGTTTCATTTATGTCCCTTTGAGATTGTGGACCACAATGTGAATGAGTCTTCTTTTGGCGTTGTTGTCAATGGTATGAAACTATTGTCGGAGTTTAATGTTCCGGGTAAGATATCTGAAAAGAACGCGAACCTGCAGAATTCTGGAAAGAATTCGAGTTCATTCTTTTTGATCAAAGAGTATATTCTGGATGTCAATGATGGTGTGCTTTTGATTGAGTTTCTTCCAAGTGGAAATTCGTTTGGCTTCATCAATGCCATTGAGATTGTTCCCGTTGTTGGCGAGCTTTTTGATGGTTCGGTTGGTAAAGTTGGCGGTGGAAACTTGAATTTGACTGGACACGGTATGGAGAGTATGTATAGGTTAAATGTTGGTGGCCCTGAGATTCAATCTAATCAGGATCCGGATCTTCGGAGAATTTGGGAAGTTGATTCTAGCTATATGGTCACGGAAAACGCCGGTGCAGCAATTAAGAGCAGCTCTAATATTACATATGCTTCTTTGAATGATACTTCAGTGGCTCCTCTCCTTGTGTATGAAACTGCAAGGGCAATGTCAAACACAGAAGTCTTGGACAAAAGATTTAACATGTCATGGAAGTTTGAAGTAGATCCTGATTTTGATTATGTTGTCCGGTTACATTTCTGCGAGCTGATGTATGATAAGTCGAACGAGAGAATATTCAGGATCTACATAAACAACAGAACAGCTGCGGATAATGTTGATGTTTTTGTTCGAGCAGGAGGGAAGAATAAAGCGTATCATCAGGATCATTATGATTCCGCATCATTGAGGATGGACACACTTTGGGTTCAACTAGGTCCTGATACAGCTGCTGGTGCTGCTGGAACGGATGCTCTCTTGAATGGTCTAGAGATTTTTAAGCTTAGCAGAAACGGGAATCTCGCCTATGTGGAGAAATTTGACTTGGCTGGGAAATCGGGAAACAGTTCAAAAGCAAAAGTTATTTGGATTGGAGTAGGAGCAGGTATTGCTTCTGTAGCTATAGTTGCATGTGTTGGTGTCTTTGTTTTCTGTTTCTGCAAAAGAAGGAGAAAAGAATCAAGTGATACCAAAAACAACTCTCCTGGTTGGCGACCGATATTCCTTTATGGAGGGGCTGCTGTAAACAGCACTGTCGGTGCCAAGGGATCAACAGGAAATCAAAAGTTATATGGTACTGTCACCTCAACAGGAGCTGGTAAGCGGTTTACATTGGCTGAAATCAACGCTGCAACAAATAATTTCGACGACAGTTTGGTCATCGGAGTTGGAGGCTTTGGTAAGGTGTATAAGGGAGAGGTTGATGATGGTGTCCCTGCTGCAATTAAGCGCGCCAATCCACAATCTGAACAAGGTCTGGCTGAATTTGAGACAGAAATTGAGATGCTCTCAAAACTAAGACACAGACATCTTGTGTCTTTGATTGGCTTCTGTGAAGAGAAAAGTGAAATGATTTTGGTTTATGAGTACATGGCAAATGGAACTCTAAGAAGTCATCTATTTGGGAGCGATCTCCCTCCACTAACTTGGAAGCAGCGTCTTGAAGCCTGCATAGGTGCTGCAAGGGGACTTCACTACCTTCACACAGGAGCCGACCGTGGAATAATTCACCGGGATGTCAAGACAACCAATATATTGTTAGACGAGAATTTTGTAGCAAAAATGGCTGATTTCGGTTTGTCAAAAGACGGTCCTGCTTTTGAACATACTCATGTTAGCACTGCTGTGAAAGGAAGTTTTGGCTATCTCGATCCGGAGTACTTCAGAAGACAACAATTAACCGAGAAATCAGATGTTTACTCTTTTGGAGTTGTTCTTTTTGAAGCTGTTTGTGCTAGAGCTGTGATAAACCCTACCTTGCCTAAAGATCAAATCAATCTTGCAGAATGGGCAATGAGATGGCAAAAAGAAAGATCACTTGAAAAAATCATTGATCCACGTCTTAATGGAAACTATTGTCCGGAATCGTTGTCTAAGTTTGGGGAAATAGCTGAAAAATGTCTGGCCGATGATGGTAAGAGCCGCCCGACCATGGGAGAGGTGTTATGGCACTTGGAGTATGTCTTGCAGCTGCATGAAGCTTGGCTCAATAGGGACAACAACAGCACAGAAAATTCCTTCTCTGGTAGTCAAGCTTTGAGTGGTCTAAATGATGGAAGAGTTGAGGTTGTGCAGGAGCATTCAAATCAAGATGAAGAGGTTGATTTGGATTCTAAAAATACAACTGATTTAGTCCACAGCAGTGTGTAA

Protein sequence

>Msa0278750

MGKVIEEGLLIVLILMIVSKNVEAQQKSILINCGSNSSVNVDGRKWIGDMAPNNNVTLSSSPGVVASTDGLSGYSIYEPLYKTARIFTSSLNYTIKDVHGNYFVRFHLCPFEIVDHNVNESSFGVVVNGMKLLSEFNVPGKISEKNANLQNSGKNSSSFFLIKEYILDVNDGVLLIEFLPSGNSFGFINAIEIVPVVGELFDGSVGKVGGGNLNLTGHGMESMYRLNVGGPEIQSNQDPDLRRIWEVDSSYMVTENAGAAIKSSSNITYASLNDTSVAPLLVYETARAMSNTEVLDKRFNMSWKFEVDPDFDYVVRLHFCELMYDKSNERIFRIYINNRTAADNVDVFVRAGGKNKAYHQDHYDSASLRMDTLWVQLGPDTAAGAAGTDALLNGLEIFKLSRNGNLAYVEKFDLAGKSGNSSKAKVIWIGVGAGIASVAIVACVGVFVFCFCKRRRKESSDTKNNSPGWRPIFLYGGAAVNSTVGAKGSTGNQKLYGTVTSTGAGKRFTLAEINAATNNFDDSLVIGVGGFGKVYKGEVDDGVPAAIKRANPQSEQGLAEFETEIEMLSKLRHRHLVSLIGFCEEKSEMILVYEYMANGTLRSHLFGSDLPPLTWKQRLEACIGAARGLHYLHTGADRGIIHRDVKTTNILLDENFVAKMADFGLSKDGPAFEHTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEAVCARAVINPTLPKDQINLAEWAMRWQKERSLEKIIDPRLNGNYCPESLSKFGEIAEKCLADDGKSRPTMGEVLWHLEYVLQLHEAWLNRDNNSTENSFSGSQALSGLNDGRVEVVQEHSNQDEEVDLDSKNTTDLVHSSV*