Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0281290 | XP_013463211.1 | 97.973 | 148 | 3 | 0 | 1 | 148 | 1 | 148 | 4.00e-97 | 290 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0281290 | sp|Q84WN3|SWT17_ARATH | 59.060 | 149 | 60 | 1 | 1 | 148 | 1 | 149 | 2.46e-59 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0281290 | A0A072VGC9 | 97.973 | 148 | 3 | 0 | 1 | 148 | 1 | 148 | 1.91e-97 | 290 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0200250 | Msa0281290 | 0.949793 | 6.181438e-108 | -8.615850e-47 |
| Msa0243080 | Msa0281290 | 0.819074 | 1.405739e-52 | -8.615850e-47 |
| Msa0281290 | Msa0320480 | 0.967472 | 2.522379e-127 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0281290 | MtrunA17_Chr2g0295681 | 97.973 | 148 | 3 | 0 | 1 | 148 | 1 | 148 | 3.68e-101 | 290 |
| Msa0281290 | MtrunA17_Chr5g0428281 | 43.056 | 144 | 82 | 0 | 5 | 148 | 10 | 153 | 7.49e-36 | 125 |
| Msa0281290 | MtrunA17_Chr6g0450941 | 45.890 | 146 | 75 | 3 | 8 | 150 | 84 | 228 | 6.85e-35 | 123 |
| Msa0281290 | MtrunA17_Chr8g0388621 | 46.154 | 143 | 75 | 1 | 8 | 148 | 13 | 155 | 3.10e-31 | 112 |
| Msa0281290 | MtrunA17_Chr3g0131951 | 40.000 | 145 | 86 | 1 | 5 | 148 | 71 | 215 | 1.41e-30 | 113 |
| Msa0281290 | MtrunA17_Chr8g0386011 | 42.759 | 145 | 82 | 1 | 5 | 148 | 9 | 153 | 1.90e-30 | 110 |
| Msa0281290 | MtrunA17_Chr3g0119951 | 43.357 | 143 | 79 | 1 | 8 | 148 | 11 | 153 | 2.22e-30 | 110 |
| Msa0281290 | MtrunA17_Chr1g0159431 | 40.667 | 150 | 86 | 2 | 1 | 148 | 1 | 149 | 2.09e-29 | 107 |
| Msa0281290 | MtrunA17_Chr3g0131961 | 42.069 | 145 | 82 | 2 | 5 | 148 | 10 | 153 | 2.73e-29 | 107 |
| Msa0281290 | MtrunA17_Chr7g0215601 | 37.143 | 140 | 88 | 0 | 9 | 148 | 14 | 153 | 1.53e-28 | 105 |
| Msa0281290 | MtrunA17_Chr3g0125861 | 41.958 | 143 | 78 | 3 | 9 | 148 | 9 | 149 | 3.29e-28 | 104 |
| Msa0281290 | MtrunA17_Chr5g0444031 | 37.063 | 143 | 89 | 1 | 6 | 148 | 31 | 172 | 6.72e-28 | 104 |
| Msa0281290 | MtrunA17_Chr7g0214191 | 42.361 | 144 | 83 | 0 | 5 | 148 | 9 | 152 | 1.14e-27 | 103 |
| Msa0281290 | MtrunA17_Chr8g0386001 | 37.500 | 144 | 89 | 1 | 6 | 148 | 10 | 153 | 1.76e-27 | 103 |
| Msa0281290 | MtrunA17_Chr1g0158931 | 40.690 | 145 | 82 | 1 | 8 | 148 | 9 | 153 | 3.60e-26 | 99.4 |
| Msa0281290 | MtrunA17_Chr3g0119991 | 42.424 | 132 | 74 | 1 | 19 | 148 | 1 | 132 | 3.73e-26 | 99.4 |
| Msa0281290 | MtrunA17_Chr3g0126421 | 37.931 | 145 | 86 | 1 | 8 | 148 | 9 | 153 | 1.43e-25 | 97.8 |
| Msa0281290 | MtrunA17_Chr6g0450951 | 40.945 | 127 | 71 | 3 | 25 | 148 | 5 | 130 | 1.89e-25 | 97.1 |
| Msa0281290 | MtrunA17_Chr6g0450931 | 43.307 | 127 | 68 | 3 | 25 | 148 | 5 | 130 | 3.93e-25 | 95.9 |
| Msa0281290 | MtrunA17_Chr3g0126411 | 40.411 | 146 | 81 | 3 | 8 | 148 | 9 | 153 | 7.54e-25 | 95.9 |
| Msa0281290 | MtrunA17_Chr7g0214181 | 38.194 | 144 | 89 | 0 | 5 | 148 | 9 | 152 | 3.26e-24 | 94.7 |
| Msa0281290 | MtrunA17_Chr8g0359261 | 40.411 | 146 | 76 | 4 | 9 | 148 | 18 | 158 | 2.72e-23 | 91.7 |
| Msa0281290 | MtrunA17_Chr2g0314571 | 40.714 | 140 | 78 | 3 | 9 | 145 | 18 | 155 | 2.59e-22 | 89.0 |
| Msa0281290 | MtrunA17_Chr4g0059191 | 40.458 | 131 | 74 | 3 | 21 | 148 | 1 | 130 | 6.55e-21 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0281290 | AT4G15920.1 | 59.060 | 149 | 60 | 1 | 1 | 148 | 1 | 149 | 2.24e-60 | 187 |
| Msa0281290 | AT3G16690.2 | 54.967 | 151 | 67 | 1 | 1 | 150 | 1 | 151 | 1.20e-55 | 173 |
| Msa0281290 | AT3G16690.1 | 55.102 | 147 | 65 | 1 | 1 | 146 | 1 | 147 | 1.73e-53 | 169 |
| Msa0281290 | AT3G16690.3 | 55.102 | 147 | 65 | 1 | 1 | 146 | 36 | 182 | 3.38e-53 | 169 |
| Msa0281290 | AT5G50800.1 | 42.759 | 145 | 82 | 1 | 5 | 148 | 9 | 153 | 4.35e-35 | 124 |
| Msa0281290 | AT5G40260.2 | 40.972 | 144 | 81 | 3 | 5 | 144 | 8 | 151 | 3.59e-33 | 116 |
| Msa0281290 | AT5G40260.1 | 40.972 | 144 | 81 | 3 | 5 | 144 | 8 | 151 | 1.31e-32 | 116 |
| Msa0281290 | AT4G25010.1 | 41.135 | 141 | 82 | 1 | 9 | 148 | 13 | 153 | 2.14e-32 | 116 |
| Msa0281290 | AT3G48740.1 | 38.194 | 144 | 89 | 0 | 5 | 148 | 11 | 154 | 6.46e-32 | 115 |
| Msa0281290 | AT1G21460.2 | 43.056 | 144 | 75 | 3 | 9 | 148 | 9 | 149 | 1.00e-31 | 112 |
| Msa0281290 | AT4G10850.1 | 41.781 | 146 | 78 | 3 | 8 | 148 | 13 | 156 | 1.67e-31 | 114 |
| Msa0281290 | AT1G21460.1 | 43.056 | 144 | 75 | 3 | 9 | 148 | 9 | 149 | 3.27e-31 | 112 |
| Msa0281290 | AT5G23660.1 | 36.806 | 144 | 91 | 0 | 5 | 148 | 11 | 154 | 1.09e-29 | 109 |
| Msa0281290 | AT5G62850.2 | 37.013 | 154 | 90 | 4 | 1 | 148 | 1 | 153 | 1.91e-29 | 107 |
| Msa0281290 | AT5G13170.1 | 37.241 | 145 | 90 | 1 | 5 | 148 | 11 | 155 | 3.75e-29 | 108 |
| Msa0281290 | AT2G39060.1 | 38.889 | 144 | 88 | 0 | 5 | 148 | 9 | 152 | 8.16e-29 | 106 |
| Msa0281290 | AT5G62850.1 | 37.013 | 154 | 90 | 4 | 1 | 148 | 1 | 153 | 1.19e-28 | 105 |
| Msa0281290 | AT5G53190.1 | 38.926 | 149 | 79 | 4 | 8 | 148 | 9 | 153 | 4.19e-26 | 99.8 |
| Msa0281290 | AT5G50790.1 | 35.000 | 140 | 91 | 0 | 9 | 148 | 13 | 152 | 5.87e-26 | 100 |
| Msa0281290 | AT1G66770.1 | 37.671 | 146 | 84 | 4 | 8 | 148 | 13 | 156 | 5.56e-25 | 97.1 |
| Msa0281290 | AT3G28007.1 | 38.462 | 143 | 84 | 3 | 9 | 148 | 12 | 153 | 3.70e-20 | 84.0 |
| Msa0281290 | AT3G14770.1 | 34.507 | 142 | 90 | 2 | 9 | 148 | 18 | 158 | 1.20e-17 | 77.0 |
Find 30 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTGTCATGGTAAGTTTC+TGG | 0.115929 | 2_3:-16686897 | Msa0281290:CDS |
| TGCAATTCTTGCTGGGATTT+TGG | 0.124715 | 2_3:-16687040 | Msa0281290:CDS |
| TATAATGCAGACCAACATTT+TGG | 0.198727 | 2_3:-16687761 | Msa0281290:intron |
| TACCTTGTGGCCACTGTTAA+TGG | 0.201020 | 2_3:-16687630 | Msa0281290:CDS |
| AGTTTCTTTGTTGGAGTTAT+AGG | 0.210484 | 2_3:-16688057 | Msa0281290:intron |
| TCTTCATTGTGGACTTACTA+TGG | 0.279770 | 2_3:-16687672 | Msa0281290:CDS |
| GTGGCCACTGTTAATGGCTT+TGG | 0.323328 | 2_3:-16687624 | Msa0281290:CDS |
| GCTTTGAACATTCTTATGTA+TGG | 0.363700 | 2_3:-16686928 | Msa0281290:CDS |
| GTGAAGACTGCAATTCTTGC+TGG | 0.366290 | 2_3:-16687048 | Msa0281290:CDS |
| TAGTGGTGCTGTTGGTATCA+TGG | 0.401798 | 2_3:-16686956 | Msa0281290:CDS |
| GCAGATCCAAGTTTCTTTGT+TGG | 0.416684 | 2_3:-16688066 | Msa0281290:CDS |
| TGGCTCACCTCTTGCTGTCA+TGG | 0.454725 | 2_3:-16686908 | Msa0281290:CDS |
| TTAAGCAATGTGCATATGTA+AGG | 0.458717 | 2_3:+16687696 | None:intergenic |
| TACTACTCAATTAGCATTGG+AGG | 0.468548 | 2_3:-16686989 | Msa0281290:CDS |
| TACTATGGAACTATAAAAGC+TGG | 0.493273 | 2_3:-16687657 | Msa0281290:CDS |
| TTTATTATTCTCCAAAATGT+TGG | 0.503864 | 2_3:+16687750 | None:intergenic |
| TGAAGACTGCAATTCTTGCT+GGG | 0.514788 | 2_3:-16687047 | Msa0281290:CDS |
| ATAACTCCAACAAAGAAACT+TGG | 0.519013 | 2_3:+16688060 | None:intergenic |
| GATTACTACTCAATTAGCAT+TGG | 0.521186 | 2_3:-16686992 | Msa0281290:CDS |
| AGTGGTGCTGTTGGTATCAT+GGG | 0.532404 | 2_3:-16686955 | Msa0281290:CDS |
| AAACTTACCATGACAGCAAG+AGG | 0.581451 | 2_3:+16686901 | None:intergenic |
| GAAGCTCGTAGTGGTGCTGT+TGG | 0.583483 | 2_3:-16686964 | Msa0281290:CDS |
| ACTACTCAATTAGCATTGGA+GGG | 0.594157 | 2_3:-16686988 | Msa0281290:CDS |
| AGCCATTAACAGTGGCCACA+AGG | 0.600324 | 2_3:+16687628 | None:intergenic |
| CATTGCTTAACTCTTCATTG+TGG | 0.620597 | 2_3:-16687683 | Msa0281290:CDS |
| TAATGGCTTTGGCATCGTGG+TGG | 0.662663 | 2_3:-16687613 | Msa0281290:CDS |
| TGTTAATGGCTTTGGCATCG+TGG | 0.667290 | 2_3:-16687616 | Msa0281290:CDS |
| TTGGAGGGAGAAGCTCGTAG+TGG | 0.699075 | 2_3:-16686973 | Msa0281290:CDS |
| AAAAGCTGGAGAATACCTTG+TGG | 0.701844 | 2_3:-16687643 | Msa0281290:CDS |
| GATGCCAAAGCCATTAACAG+TGG | 0.716694 | 2_3:+16687620 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTATTTTAAGATGTA+TGG | + | chr2_3:16687768-16687787 | None:intergenic | 10.0% |
| !!! | AAAAATTATTTTAAGATGTA+TGG | + | chr2_3:16687768-16687787 | None:intergenic | 10.0% |
| !!! | TATATGAAATTTCCATTTTT+GGG | + | chr2_3:16687016-16687035 | None:intergenic | 15.0% |
| !!! | ATATATGAAATTTCCATTTT+TGG | + | chr2_3:16687017-16687036 | None:intergenic | 15.0% |
| !! | AAAAATGGAAATTTCATATA+TGG | - | chr2_3:16687016-16687035 | Msa0281290:CDS | 15.0% |
| !!! | TATATGAAATTTCCATTTTT+GGG | + | chr2_3:16687016-16687035 | None:intergenic | 15.0% |
| !!! | ATATATGAAATTTCCATTTT+TGG | + | chr2_3:16687017-16687036 | None:intergenic | 15.0% |
| !! | AAAAATGGAAATTTCATATA+TGG | - | chr2_3:16687016-16687035 | Msa0281290:CDS | 15.0% |
| !! | TTTATTATTCTCCAAAATGT+TGG | + | chr2_3:16687207-16687226 | None:intergenic | 20.0% |
| !! | GTATATGTTTGATTAAATTC+AGG | - | chr2_3:16687884-16687903 | Msa0281290:CDS | 20.0% |
| !! | TTTATTATTCTCCAAAATGT+TGG | + | chr2_3:16687207-16687226 | None:intergenic | 20.0% |
| !! | GTATATGTTTGATTAAATTC+AGG | - | chr2_3:16687884-16687903 | Msa0281290:CDS | 20.0% |
| ! | AAAAGGAATGAATATTAGGA+GGG | + | chr2_3:16686942-16686961 | None:intergenic | 25.0% |
| ! | AGTGAAAAGGAATGAATATT+AGG | + | chr2_3:16686946-16686965 | None:intergenic | 25.0% |
| !!! | TTTTCTTAATTTGTTGCTAC+AGG | - | chr2_3:16687042-16687061 | Msa0281290:CDS | 25.0% |
| !! | TATTGTCTCAATTTTGCTAA+TGG | - | chr2_3:16687147-16687166 | Msa0281290:intron | 25.0% |
| !! | ACTATGTTGTTTGAATTTAG+AGG | - | chr2_3:16687694-16687713 | Msa0281290:CDS | 25.0% |
| !!! | TGATTAGTGACTTTTTTATG+AGG | - | chr2_3:16687832-16687851 | Msa0281290:intron | 25.0% |
| ! | AAAAGGAATGAATATTAGGA+GGG | + | chr2_3:16686942-16686961 | None:intergenic | 25.0% |
| ! | AGTGAAAAGGAATGAATATT+AGG | + | chr2_3:16686946-16686965 | None:intergenic | 25.0% |
| !!! | TTTTCTTAATTTGTTGCTAC+AGG | - | chr2_3:16687042-16687061 | Msa0281290:CDS | 25.0% |
| !! | TATTGTCTCAATTTTGCTAA+TGG | - | chr2_3:16687147-16687166 | Msa0281290:intron | 25.0% |
| !! | ACTATGTTGTTTGAATTTAG+AGG | - | chr2_3:16687694-16687713 | Msa0281290:CDS | 25.0% |
| !!! | TGATTAGTGACTTTTTTATG+AGG | - | chr2_3:16687832-16687851 | Msa0281290:intron | 25.0% |
| ATAACTCCAACAAAGAAACT+TGG | + | chr2_3:16686897-16686916 | None:intergenic | 30.0% | |
| AGTTTCTTTGTTGGAGTTAT+AGG | - | chr2_3:16686897-16686916 | Msa0281290:CDS | 30.0% | |
| GAAAAGGAATGAATATTAGG+AGG | + | chr2_3:16686943-16686962 | None:intergenic | 30.0% | |
| ! | TATAATGCAGACCAACATTT+TGG | - | chr2_3:16687193-16687212 | Msa0281290:intron | 30.0% |
| TTAAGCAATGTGCATATGTA+AGG | + | chr2_3:16687261-16687280 | None:intergenic | 30.0% | |
| TACTATGGAACTATAAAAGC+TGG | - | chr2_3:16687297-16687316 | Msa0281290:intron | 30.0% | |
| !! | ATATTCGTACCCTCATTTTT+GGG | + | chr2_3:16687404-16687423 | None:intergenic | 30.0% |
| ! | TATATTCGTACCCTCATTTT+TGG | + | chr2_3:16687405-16687424 | None:intergenic | 30.0% |
| CAACATAGTTCAAATATCCT+CGG | + | chr2_3:16687683-16687702 | None:intergenic | 30.0% | |
| GATTACTACTCAATTAGCAT+TGG | - | chr2_3:16687962-16687981 | Msa0281290:intron | 30.0% | |
| ! | GCTTTGAACATTCTTATGTA+TGG | - | chr2_3:16688026-16688045 | Msa0281290:intron | 30.0% |
| ATAACTCCAACAAAGAAACT+TGG | + | chr2_3:16686897-16686916 | None:intergenic | 30.0% | |
| AGTTTCTTTGTTGGAGTTAT+AGG | - | chr2_3:16686897-16686916 | Msa0281290:CDS | 30.0% | |
| GAAAAGGAATGAATATTAGG+AGG | + | chr2_3:16686943-16686962 | None:intergenic | 30.0% | |
| ! | TATAATGCAGACCAACATTT+TGG | - | chr2_3:16687193-16687212 | Msa0281290:intron | 30.0% |
| TTAAGCAATGTGCATATGTA+AGG | + | chr2_3:16687261-16687280 | None:intergenic | 30.0% | |
| TACTATGGAACTATAAAAGC+TGG | - | chr2_3:16687297-16687316 | Msa0281290:intron | 30.0% | |
| !! | ATATTCGTACCCTCATTTTT+GGG | + | chr2_3:16687404-16687423 | None:intergenic | 30.0% |
| ! | TATATTCGTACCCTCATTTT+TGG | + | chr2_3:16687405-16687424 | None:intergenic | 30.0% |
| CAACATAGTTCAAATATCCT+CGG | + | chr2_3:16687683-16687702 | None:intergenic | 30.0% | |
| GATTACTACTCAATTAGCAT+TGG | - | chr2_3:16687962-16687981 | Msa0281290:intron | 30.0% | |
| ! | GCTTTGAACATTCTTATGTA+TGG | - | chr2_3:16688026-16688045 | Msa0281290:intron | 30.0% |
| GTTAGTGCAAAAGAGTGAAA+AGG | + | chr2_3:16686959-16686978 | None:intergenic | 35.0% | |
| ! | CTCTTTTGCACTAACCTTAA+TGG | - | chr2_3:16686964-16686983 | Msa0281290:CDS | 35.0% |
| TTTGCACTAACCTTAATGGA+TGG | - | chr2_3:16686968-16686987 | Msa0281290:CDS | 35.0% | |
| AAGATTGGTACCATCCATTA+AGG | + | chr2_3:16686981-16687000 | None:intergenic | 35.0% | |
| TATTGATCCATGCCCAAAAA+TGG | - | chr2_3:16687001-16687020 | Msa0281290:CDS | 35.0% | |
| !! | GAAATTTCCATTTTTGGGCA+TGG | + | chr2_3:16687011-16687030 | None:intergenic | 35.0% |
| CATTGCTTAACTCTTCATTG+TGG | - | chr2_3:16687271-16687290 | Msa0281290:intron | 35.0% | |
| TCTTCATTGTGGACTTACTA+TGG | - | chr2_3:16687282-16687301 | Msa0281290:intron | 35.0% | |
| !! | TATTCGTACCCTCATTTTTG+GGG | + | chr2_3:16687403-16687422 | None:intergenic | 35.0% |
| ! | TGACATTTTACAATGTTCCG+AGG | - | chr2_3:16687663-16687682 | Msa0281290:CDS | 35.0% |
| ! | TACTACTCAATTAGCATTGG+AGG | - | chr2_3:16687965-16687984 | Msa0281290:intron | 35.0% |
| ! | ACTACTCAATTAGCATTGGA+GGG | - | chr2_3:16687966-16687985 | Msa0281290:intron | 35.0% |
| GTTAGTGCAAAAGAGTGAAA+AGG | + | chr2_3:16686959-16686978 | None:intergenic | 35.0% | |
| ! | CTCTTTTGCACTAACCTTAA+TGG | - | chr2_3:16686964-16686983 | Msa0281290:CDS | 35.0% |
| TTTGCACTAACCTTAATGGA+TGG | - | chr2_3:16686968-16686987 | Msa0281290:CDS | 35.0% | |
| AAGATTGGTACCATCCATTA+AGG | + | chr2_3:16686981-16687000 | None:intergenic | 35.0% | |
| TATTGATCCATGCCCAAAAA+TGG | - | chr2_3:16687001-16687020 | Msa0281290:CDS | 35.0% | |
| !! | GAAATTTCCATTTTTGGGCA+TGG | + | chr2_3:16687011-16687030 | None:intergenic | 35.0% |
| CATTGCTTAACTCTTCATTG+TGG | - | chr2_3:16687271-16687290 | Msa0281290:intron | 35.0% | |
| TCTTCATTGTGGACTTACTA+TGG | - | chr2_3:16687282-16687301 | Msa0281290:intron | 35.0% | |
| !! | TATTCGTACCCTCATTTTTG+GGG | + | chr2_3:16687403-16687422 | None:intergenic | 35.0% |
| ! | TGACATTTTACAATGTTCCG+AGG | - | chr2_3:16687663-16687682 | Msa0281290:CDS | 35.0% |
| ! | TACTACTCAATTAGCATTGG+AGG | - | chr2_3:16687965-16687984 | Msa0281290:intron | 35.0% |
| ! | ACTACTCAATTAGCATTGGA+GGG | - | chr2_3:16687966-16687985 | Msa0281290:intron | 35.0% |
| GCAGATCCAAGTTTCTTTGT+TGG | - | chr2_3:16686888-16686907 | Msa0281290:CDS | 40.0% | |
| GGGCATGGATCAATAAAGAT+TGG | + | chr2_3:16686996-16687015 | None:intergenic | 40.0% | |
| AGAGTGTAAAGAGCTTACAC+AGG | + | chr2_3:16687099-16687118 | None:intergenic | 40.0% | |
| AAAAGCTGGAGAATACCTTG+TGG | - | chr2_3:16687311-16687330 | Msa0281290:intron | 40.0% | |
| TATATGCACCCCCAAAAATG+AGG | - | chr2_3:16687391-16687410 | Msa0281290:intron | 40.0% | |
| ATATGCACCCCCAAAAATGA+GGG | - | chr2_3:16687392-16687411 | Msa0281290:intron | 40.0% | |
| !! | ATTCGTACCCTCATTTTTGG+GGG | + | chr2_3:16687402-16687421 | None:intergenic | 40.0% |
| TGAAGACTGCAATTCTTGCT+GGG | - | chr2_3:16687907-16687926 | Msa0281290:intron | 40.0% | |
| ! | TGCAATTCTTGCTGGGATTT+TGG | - | chr2_3:16687914-16687933 | Msa0281290:intron | 40.0% |
| AAACTTACCATGACAGCAAG+AGG | + | chr2_3:16688056-16688075 | None:intergenic | 40.0% | |
| TTGCTGTCATGGTAAGTTTC+TGG | - | chr2_3:16688057-16688076 | Msa0281290:intron | 40.0% | |
| GCAGATCCAAGTTTCTTTGT+TGG | - | chr2_3:16686888-16686907 | Msa0281290:CDS | 40.0% | |
| GGGCATGGATCAATAAAGAT+TGG | + | chr2_3:16686996-16687015 | None:intergenic | 40.0% | |
| AGAGTGTAAAGAGCTTACAC+AGG | + | chr2_3:16687099-16687118 | None:intergenic | 40.0% | |
| AAAAGCTGGAGAATACCTTG+TGG | - | chr2_3:16687311-16687330 | Msa0281290:intron | 40.0% | |
| TATATGCACCCCCAAAAATG+AGG | - | chr2_3:16687391-16687410 | Msa0281290:intron | 40.0% | |
| ATATGCACCCCCAAAAATGA+GGG | - | chr2_3:16687392-16687411 | Msa0281290:intron | 40.0% | |
| !! | ATTCGTACCCTCATTTTTGG+GGG | + | chr2_3:16687402-16687421 | None:intergenic | 40.0% |
| TGAAGACTGCAATTCTTGCT+GGG | - | chr2_3:16687907-16687926 | Msa0281290:intron | 40.0% | |
| ! | TGCAATTCTTGCTGGGATTT+TGG | - | chr2_3:16687914-16687933 | Msa0281290:intron | 40.0% |
| AAACTTACCATGACAGCAAG+AGG | + | chr2_3:16688056-16688075 | None:intergenic | 40.0% | |
| TTGCTGTCATGGTAAGTTTC+TGG | - | chr2_3:16688057-16688076 | Msa0281290:intron | 40.0% | |
| TACCTTGTGGCCACTGTTAA+TGG | - | chr2_3:16687324-16687343 | Msa0281290:intron | 45.0% | |
| GATGCCAAAGCCATTAACAG+TGG | + | chr2_3:16687337-16687356 | None:intergenic | 45.0% | |
| !! | TGTTAATGGCTTTGGCATCG+TGG | - | chr2_3:16687338-16687357 | Msa0281290:intron | 45.0% |
| GTGAAGACTGCAATTCTTGC+TGG | - | chr2_3:16687906-16687925 | Msa0281290:intron | 45.0% | |
| ! | GATTTTGGACGTGGTGATCT+TGG | - | chr2_3:16687929-16687948 | Msa0281290:intron | 45.0% |
| !! | TAGTGGTGCTGTTGGTATCA+TGG | - | chr2_3:16687998-16688017 | Msa0281290:intron | 45.0% |
| !! | AGTGGTGCTGTTGGTATCAT+GGG | - | chr2_3:16687999-16688018 | Msa0281290:intron | 45.0% |
| TACCTTGTGGCCACTGTTAA+TGG | - | chr2_3:16687324-16687343 | Msa0281290:intron | 45.0% | |
| GATGCCAAAGCCATTAACAG+TGG | + | chr2_3:16687337-16687356 | None:intergenic | 45.0% | |
| !! | TGTTAATGGCTTTGGCATCG+TGG | - | chr2_3:16687338-16687357 | Msa0281290:intron | 45.0% |
| GTGAAGACTGCAATTCTTGC+TGG | - | chr2_3:16687906-16687925 | Msa0281290:intron | 45.0% | |
| ! | GATTTTGGACGTGGTGATCT+TGG | - | chr2_3:16687929-16687948 | Msa0281290:intron | 45.0% |
| !! | TAGTGGTGCTGTTGGTATCA+TGG | - | chr2_3:16687998-16688017 | Msa0281290:intron | 45.0% |
| !! | AGTGGTGCTGTTGGTATCAT+GGG | - | chr2_3:16687999-16688018 | Msa0281290:intron | 45.0% |
| AGCCATTAACAGTGGCCACA+AGG | + | chr2_3:16687329-16687348 | None:intergenic | 50.0% | |
| GTGGCCACTGTTAATGGCTT+TGG | - | chr2_3:16687330-16687349 | Msa0281290:intron | 50.0% | |
| !! | TAATGGCTTTGGCATCGTGG+TGG | - | chr2_3:16687341-16687360 | Msa0281290:intron | 50.0% |
| ! | TCTTGCTGGGATTTTGGACG+TGG | - | chr2_3:16687920-16687939 | Msa0281290:intron | 50.0% |
| AGCCATTAACAGTGGCCACA+AGG | + | chr2_3:16687329-16687348 | None:intergenic | 50.0% | |
| GTGGCCACTGTTAATGGCTT+TGG | - | chr2_3:16687330-16687349 | Msa0281290:intron | 50.0% | |
| !! | TAATGGCTTTGGCATCGTGG+TGG | - | chr2_3:16687341-16687360 | Msa0281290:intron | 50.0% |
| ! | TCTTGCTGGGATTTTGGACG+TGG | - | chr2_3:16687920-16687939 | Msa0281290:intron | 50.0% |
| TTGGAGGGAGAAGCTCGTAG+TGG | - | chr2_3:16687981-16688000 | Msa0281290:intron | 55.0% | |
| !! | GAAGCTCGTAGTGGTGCTGT+TGG | - | chr2_3:16687990-16688009 | Msa0281290:intron | 55.0% |
| ! | TGGCTCACCTCTTGCTGTCA+TGG | - | chr2_3:16688046-16688065 | Msa0281290:intron | 55.0% |
| TTGGAGGGAGAAGCTCGTAG+TGG | - | chr2_3:16687981-16688000 | Msa0281290:intron | 55.0% | |
| !! | GAAGCTCGTAGTGGTGCTGT+TGG | - | chr2_3:16687990-16688009 | Msa0281290:intron | 55.0% |
| ! | TGGCTCACCTCTTGCTGTCA+TGG | - | chr2_3:16688046-16688065 | Msa0281290:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 16686885 | 16688091 | 16686885 | ID=Msa0281290;Name=Msa0281290 |
| chr2_3 | mRNA | 16686885 | 16688091 | 16686885 | ID=Msa0281290-mRNA-1;Parent=Msa0281290;Name=Msa0281290-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|4|0|155 |
| chr2_3 | exon | 16688058 | 16688091 | 16688058 | ID=Msa0281290-mRNA-1:exon:6841;Parent=Msa0281290-mRNA-1 |
| chr2_3 | exon | 16687876 | 16687912 | 16687876 | ID=Msa0281290-mRNA-1:exon:6840;Parent=Msa0281290-mRNA-1 |
| chr2_3 | exon | 16687563 | 16687773 | 16687563 | ID=Msa0281290-mRNA-1:exon:6839;Parent=Msa0281290-mRNA-1 |
| chr2_3 | exon | 16686885 | 16687070 | 16686885 | ID=Msa0281290-mRNA-1:exon:6838;Parent=Msa0281290-mRNA-1 |
| chr2_3 | CDS | 16688058 | 16688091 | 16688058 | ID=Msa0281290-mRNA-1:cds;Parent=Msa0281290-mRNA-1 |
| chr2_3 | CDS | 16687876 | 16687912 | 16687876 | ID=Msa0281290-mRNA-1:cds;Parent=Msa0281290-mRNA-1 |
| chr2_3 | CDS | 16687563 | 16687773 | 16687563 | ID=Msa0281290-mRNA-1:cds;Parent=Msa0281290-mRNA-1 |
| chr2_3 | CDS | 16686885 | 16687070 | 16686885 | ID=Msa0281290-mRNA-1:cds;Parent=Msa0281290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
