Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0320480 | XP_013463211.1 | 96.341 | 246 | 9 | 0 | 1 | 246 | 1 | 246 | 1.35e-172 | 485 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0320480 | sp|Q84WN3|SWT17_ARATH | 58.696 | 230 | 93 | 2 | 1 | 229 | 1 | 229 | 1.41e-92 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0200250 | Msa0320480 | 0.977782 | 1.788167e-144 | -8.615850e-47 |
| Msa0243080 | Msa0320480 | 0.823805 | 1.136397e-53 | -8.615850e-47 |
| Msa0281290 | Msa0320480 | 0.967472 | 2.522379e-127 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0320480 | MtrunA17_Chr2g0295681 | 96.341 | 246 | 9 | 0 | 1 | 246 | 1 | 246 | 1.24e-176 | 485 |
| Msa0320480 | MtrunA17_Chr5g0428281 | 41.784 | 213 | 124 | 0 | 5 | 217 | 10 | 222 | 1.69e-58 | 186 |
| Msa0320480 | MtrunA17_Chr3g0125861 | 42.017 | 238 | 132 | 4 | 9 | 242 | 9 | 244 | 4.86e-57 | 182 |
| Msa0320480 | MtrunA17_Chr1g0159431 | 42.601 | 223 | 125 | 2 | 6 | 226 | 6 | 227 | 3.03e-56 | 180 |
| Msa0320480 | MtrunA17_Chr8g0386011 | 42.273 | 220 | 126 | 1 | 5 | 223 | 9 | 228 | 4.09e-56 | 180 |
| Msa0320480 | MtrunA17_Chr3g0131961 | 42.411 | 224 | 125 | 3 | 5 | 227 | 10 | 230 | 5.61e-54 | 175 |
| Msa0320480 | MtrunA17_Chr6g0450941 | 45.662 | 219 | 112 | 5 | 8 | 220 | 84 | 301 | 9.54e-54 | 175 |
| Msa0320480 | MtrunA17_Chr3g0131951 | 40.191 | 209 | 124 | 1 | 5 | 212 | 71 | 279 | 1.31e-52 | 174 |
| Msa0320480 | MtrunA17_Chr5g0444031 | 38.636 | 220 | 132 | 2 | 6 | 223 | 31 | 249 | 1.40e-52 | 171 |
| Msa0320480 | MtrunA17_Chr3g0119951 | 39.669 | 242 | 137 | 3 | 8 | 241 | 11 | 251 | 2.47e-52 | 170 |
| Msa0320480 | MtrunA17_Chr7g0215601 | 36.522 | 230 | 142 | 2 | 9 | 238 | 14 | 239 | 8.17e-52 | 169 |
| Msa0320480 | MtrunA17_Chr8g0386001 | 37.719 | 228 | 135 | 2 | 6 | 226 | 10 | 237 | 6.99e-51 | 167 |
| Msa0320480 | MtrunA17_Chr7g0214191 | 43.478 | 207 | 117 | 0 | 5 | 211 | 9 | 215 | 1.51e-50 | 166 |
| Msa0320480 | MtrunA17_Chr8g0388621 | 42.273 | 220 | 122 | 2 | 8 | 222 | 13 | 232 | 4.83e-50 | 164 |
| Msa0320480 | MtrunA17_Chr3g0119991 | 38.961 | 231 | 132 | 3 | 19 | 241 | 1 | 230 | 5.65e-48 | 158 |
| Msa0320480 | MtrunA17_Chr7g0214181 | 39.535 | 215 | 130 | 0 | 5 | 219 | 9 | 223 | 1.28e-47 | 158 |
| Msa0320480 | MtrunA17_Chr1g0158931 | 41.096 | 219 | 125 | 1 | 8 | 222 | 9 | 227 | 1.90e-46 | 155 |
| Msa0320480 | MtrunA17_Chr8g0359261 | 41.860 | 215 | 114 | 4 | 9 | 217 | 18 | 227 | 2.08e-44 | 149 |
| Msa0320480 | MtrunA17_Chr6g0450931 | 43.000 | 200 | 109 | 4 | 25 | 220 | 5 | 203 | 4.80e-44 | 147 |
| Msa0320480 | MtrunA17_Chr3g0126411 | 40.179 | 224 | 125 | 5 | 8 | 224 | 9 | 230 | 7.66e-44 | 148 |
| Msa0320480 | MtrunA17_Chr3g0126421 | 38.739 | 222 | 131 | 2 | 8 | 224 | 9 | 230 | 2.02e-43 | 147 |
| Msa0320480 | MtrunA17_Chr6g0450951 | 42.708 | 192 | 105 | 4 | 25 | 212 | 5 | 195 | 8.32e-43 | 144 |
| Msa0320480 | MtrunA17_Chr4g0059191 | 41.885 | 191 | 107 | 3 | 21 | 208 | 1 | 190 | 3.58e-41 | 140 |
| Msa0320480 | MtrunA17_Chr2g0314571 | 39.815 | 216 | 125 | 3 | 9 | 221 | 18 | 231 | 5.60e-41 | 140 |
| Msa0320480 | MtrunA17_Chr2g0278491 | 36.842 | 171 | 102 | 2 | 53 | 223 | 2 | 166 | 2.65e-32 | 117 |
| Msa0320480 | MtrunA17_Chr6g0450901 | 44.444 | 99 | 54 | 1 | 121 | 218 | 6 | 104 | 2.76e-18 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0320480 | AT4G15920.1 | 58.696 | 230 | 93 | 2 | 1 | 229 | 1 | 229 | 1.34e-93 | 275 |
| Msa0320480 | AT3G16690.1 | 52.889 | 225 | 101 | 2 | 1 | 224 | 1 | 221 | 3.80e-82 | 246 |
| Msa0320480 | AT3G16690.3 | 52.889 | 225 | 101 | 2 | 1 | 224 | 36 | 256 | 5.53e-82 | 246 |
| Msa0320480 | AT1G21460.1 | 43.836 | 219 | 116 | 3 | 9 | 223 | 9 | 224 | 1.35e-57 | 184 |
| Msa0320480 | AT3G48740.1 | 39.091 | 220 | 134 | 0 | 5 | 224 | 11 | 230 | 1.39e-56 | 182 |
| Msa0320480 | AT4G10850.1 | 41.704 | 223 | 123 | 3 | 8 | 225 | 13 | 233 | 1.59e-56 | 181 |
| Msa0320480 | AT5G50800.1 | 39.316 | 234 | 140 | 2 | 5 | 236 | 9 | 242 | 3.92e-56 | 181 |
| Msa0320480 | AT5G13170.1 | 38.636 | 220 | 134 | 1 | 5 | 223 | 11 | 230 | 2.67e-55 | 179 |
| Msa0320480 | AT5G23660.1 | 38.496 | 226 | 136 | 1 | 5 | 230 | 11 | 233 | 6.17e-54 | 176 |
| Msa0320480 | AT3G16690.2 | 53.691 | 149 | 68 | 1 | 1 | 148 | 1 | 149 | 1.98e-53 | 171 |
| Msa0320480 | AT1G66770.1 | 39.506 | 243 | 139 | 5 | 8 | 245 | 13 | 252 | 5.98e-53 | 172 |
| Msa0320480 | AT4G25010.1 | 37.975 | 237 | 142 | 2 | 9 | 240 | 13 | 249 | 1.98e-52 | 171 |
| Msa0320480 | AT2G39060.1 | 40.000 | 210 | 126 | 0 | 5 | 214 | 9 | 218 | 2.81e-52 | 170 |
| Msa0320480 | AT5G62850.1 | 38.075 | 239 | 132 | 5 | 1 | 224 | 1 | 238 | 1.58e-51 | 168 |
| Msa0320480 | AT5G40260.1 | 42.584 | 209 | 113 | 6 | 6 | 208 | 9 | 216 | 1.14e-48 | 160 |
| Msa0320480 | AT5G50790.1 | 34.298 | 242 | 154 | 2 | 9 | 245 | 13 | 254 | 5.20e-48 | 160 |
| Msa0320480 | AT5G53190.1 | 38.865 | 229 | 128 | 4 | 8 | 228 | 9 | 233 | 6.58e-48 | 159 |
| Msa0320480 | AT1G21460.2 | 43.750 | 192 | 101 | 3 | 9 | 196 | 9 | 197 | 4.74e-47 | 155 |
| Msa0320480 | AT5G40260.2 | 44.262 | 183 | 96 | 5 | 6 | 183 | 9 | 190 | 9.87e-46 | 152 |
| Msa0320480 | AT5G62850.2 | 41.053 | 190 | 105 | 4 | 1 | 184 | 1 | 189 | 1.24e-44 | 149 |
| Msa0320480 | AT3G28007.1 | 40.686 | 204 | 115 | 3 | 9 | 208 | 12 | 213 | 7.34e-41 | 140 |
| Msa0320480 | AT3G14770.1 | 34.956 | 226 | 136 | 3 | 9 | 232 | 18 | 234 | 1.71e-35 | 126 |
Find 61 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATTCTTGCTGGGATTT+TGG | 0.124715 | 2_4:+20989075 | Msa0320480:CDS |
| CTTGTTCGTGATTCCATTCT+TGG | 0.150295 | 2_4:+20993135 | Msa0320480:CDS |
| TATAATGCAGACCAACATTT+TGG | 0.198727 | 2_4:+20988356 | Msa0320480:intron |
| TACCTTGTGGCCACTGTTAA+TGG | 0.201020 | 2_4:+20988487 | Msa0320480:CDS |
| AGTTTCTTTGTTGGAGTTAT+AGG | 0.210484 | 2_4:+20988060 | Msa0320480:CDS |
| TCTTCATTGTGGACTTACTA+TGG | 0.279770 | 2_4:+20988445 | Msa0320480:CDS |
| GAAGCATAGTTCAAACAAAT+TGG | 0.301687 | 2_4:+20993619 | Msa0320480:CDS |
| TACCAAAGGCTCTTAAAATC+TGG | 0.315961 | 2_4:-20993945 | None:intergenic |
| GTAGTTTCAATTTCTTCTTT+TGG | 0.316397 | 2_4:-20987995 | None:intergenic |
| TTGTTCGTGATTCCATTCTT+GGG | 0.316813 | 2_4:+20993136 | Msa0320480:CDS |
| GTGGCCACTGTTAATGGCTT+TGG | 0.323328 | 2_4:+20988493 | Msa0320480:CDS |
| ACTTCAACATACATCAATTC+TGG | 0.329761 | 2_4:-20994025 | None:intergenic |
| TAGGCAGAAGAGTGAGAATA+AGG | 0.349656 | 2_4:-20987956 | None:intergenic |
| AAGAAGAGTTTCTTATTGTC+TGG | 0.353074 | 2_4:-20987928 | None:intergenic |
| TCTTAAAATCTGGGCATATA+AGG | 0.358195 | 2_4:-20993935 | None:intergenic |
| AAAATTCATTGACTCTTCCT+TGG | 0.358647 | 2_4:-20993789 | None:intergenic |
| GCTTTGAACATTCTTATGTA+TGG | 0.363700 | 2_4:+20989187 | Msa0320480:CDS |
| GTGAAGACTGCAATTCTTGC+TGG | 0.366290 | 2_4:+20989067 | Msa0320480:CDS |
| TAGTGGTGCTGTTGGTATCA+TGG | 0.401798 | 2_4:+20989159 | Msa0320480:CDS |
| GCAGATCCAAGTTTCTTTGT+TGG | 0.416684 | 2_4:+20988051 | Msa0320480:CDS |
| TGAAAGCAAAATGACTAGAT+AGG | 0.435183 | 2_4:-20993710 | None:intergenic |
| AGTTTCAAAGCTATATATGT+TGG | 0.442889 | 2_4:+20993733 | Msa0320480:three_prime_UTR |
| TGGCTCACCTCTTGCTGTCA+TGG | 0.454725 | 2_4:+20989207 | Msa0320480:CDS |
| TTAAGCAATGTGCATATGTA+AGG | 0.458717 | 2_4:-20988421 | None:intergenic |
| ACCAAAGGCTCTTAAAATCT+GGG | 0.464412 | 2_4:-20993944 | None:intergenic |
| TGGTGTGCATATTTATGGCT+AGG | 0.464602 | 2_4:-20987975 | None:intergenic |
| AACGGTACTGGATTTGTACT+TGG | 0.465985 | 2_4:+20993548 | Msa0320480:CDS |
| TACTACTCAATTAGCATTGG+AGG | 0.468548 | 2_4:+20989126 | Msa0320480:CDS |
| GTTTCAAAGCTATATATGTT+GGG | 0.483769 | 2_4:+20993734 | Msa0320480:three_prime_UTR |
| TAACAGGTACCAAACGGTAC+TGG | 0.487057 | 2_4:+20993536 | Msa0320480:intron |
| TACTATGGAACTATAAAAGC+TGG | 0.493273 | 2_4:+20988460 | Msa0320480:CDS |
| CTTGTTTCTTAGTTTCCTCA+TGG | 0.497080 | 2_4:+20988029 | Msa0320480:exon |
| ACCAGAGCTTACCCCAAGAA+TGG | 0.501782 | 2_4:-20993148 | None:intergenic |
| TTTATTATTCTCCAAAATGT+TGG | 0.503864 | 2_4:-20988367 | None:intergenic |
| TGAAGACTGCAATTCTTGCT+GGG | 0.514788 | 2_4:+20989068 | Msa0320480:CDS |
| ATAACTCCAACAAAGAAACT+TGG | 0.519013 | 2_4:-20988057 | None:intergenic |
| GATTACTACTCAATTAGCAT+TGG | 0.521186 | 2_4:+20989123 | Msa0320480:CDS |
| AATAAATAACAGGTACCAAA+CGG | 0.527804 | 2_4:+20993530 | Msa0320480:intron |
| AGTGGTGCTGTTGGTATCAT+GGG | 0.532404 | 2_4:+20989160 | Msa0320480:CDS |
| CTATACAGTTAGTGTTGCAT+GGG | 0.542538 | 2_4:+20993573 | Msa0320480:CDS |
| GCTATACAGTTAGTGTTGCA+TGG | 0.548209 | 2_4:+20993572 | Msa0320480:CDS |
| TGTTCGTGATTCCATTCTTG+GGG | 0.555609 | 2_4:+20993137 | Msa0320480:CDS |
| AGTTCAAACAAATTGGAAGA+AGG | 0.559173 | 2_4:+20993626 | Msa0320480:CDS |
| AGTACAAATCCAGTACCGTT+TGG | 0.560971 | 2_4:-20993545 | None:intergenic |
| CAAACAAATTGGAAGAAGGA+TGG | 0.563874 | 2_4:+20993630 | Msa0320480:CDS |
| ATTGCATTCAAATATACCAA+AGG | 0.567836 | 2_4:-20993959 | None:intergenic |
| AAACTTACCATGACAGCAAG+AGG | 0.581451 | 2_4:-20989214 | None:intergenic |
| GAAGCTCGTAGTGGTGCTGT+TGG | 0.583483 | 2_4:+20989151 | Msa0320480:CDS |
| TTGCATGGGATTTACAGAGA+TGG | 0.585661 | 2_4:+20993587 | Msa0320480:CDS |
| ACTACTCAATTAGCATTGGA+GGG | 0.594157 | 2_4:+20989127 | Msa0320480:CDS |
| ATCATGTGACTGAGTAGTTG+AGG | 0.600181 | 2_4:-20993675 | None:intergenic |
| AGCCATTAACAGTGGCCACA+AGG | 0.600324 | 2_4:-20988489 | None:intergenic |
| GCAGAAGAGTGAGAATAAGG+TGG | 0.617108 | 2_4:-20987953 | None:intergenic |
| CATTGCTTAACTCTTCATTG+TGG | 0.620597 | 2_4:+20988434 | Msa0320480:CDS |
| TAATGGCTTTGGCATCGTGG+TGG | 0.662663 | 2_4:+20988504 | Msa0320480:CDS |
| TGTTAATGGCTTTGGCATCG+TGG | 0.667290 | 2_4:+20988501 | Msa0320480:CDS |
| TTGGAGGGAGAAGCTCGTAG+TGG | 0.699075 | 2_4:+20989142 | Msa0320480:CDS |
| AAAAGCTGGAGAATACCTTG+TGG | 0.701844 | 2_4:+20988474 | Msa0320480:CDS |
| TTGTAACTTTCAGAAAACGG+TGG | 0.711959 | 2_4:+20993026 | Msa0320480:intron |
| GATGCCAAAGCCATTAACAG+TGG | 0.716694 | 2_4:-20988497 | None:intergenic |
| AGAAACTTGGATCTGCCATG+AGG | 0.723218 | 2_4:-20988044 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTATTTTAAGATGTA+TGG | - | chr2_4:20988931-20988950 | None:intergenic | 10.0% |
| !!! | TTGATTTTTTTTTTTTTTGA+GGG | - | chr2_4:20989394-20989413 | None:intergenic | 10.0% |
| !! | AACTATATAATATTAATTAG+TGG | - | chr2_4:20989656-20989675 | None:intergenic | 10.0% |
| !!! | TTTTTTTTAGGTTAAAAATA+AGG | - | chr2_4:20989875-20989894 | None:intergenic | 10.0% |
| !!! | TATTTTTCTTTTATTTCTAT+TGG | + | chr2_4:20990014-20990033 | Msa0320480:intron | 10.0% |
| !! | TAATATTATGAATATTTGAA+CGG | + | chr2_4:20990607-20990626 | Msa0320480:intron | 10.0% |
| !! | TAATAATAACATAATTTCTT+CGG | - | chr2_4:20990712-20990731 | None:intergenic | 10.0% |
| !! | AAATATAAATTGGAAATATT+GGG | - | chr2_4:20992887-20992906 | None:intergenic | 10.0% |
| !! | TAATATAATTACTTTACATA+TGG | - | chr2_4:20993205-20993224 | None:intergenic | 10.0% |
| !!! | TATATGAAATTTCCATTTTT+GGG | - | chr2_4:20988179-20988198 | None:intergenic | 15.0% |
| !!! | ATATATGAAATTTCCATTTT+TGG | - | chr2_4:20988180-20988199 | None:intergenic | 15.0% |
| !! | AAAAATGGAAATTTCATATA+TGG | + | chr2_4:20988179-20988198 | Msa0320480:intron | 15.0% |
| !! | TTTATTTCACTAATAATCTA+AGG | - | chr2_4:20989332-20989351 | None:intergenic | 15.0% |
| !! | ATAAATAGATTTCATGTTAT+AGG | + | chr2_4:20989347-20989366 | Msa0320480:intron | 15.0% |
| !!! | CTTGATTTTTTTTTTTTTTG+AGG | - | chr2_4:20989395-20989414 | None:intergenic | 15.0% |
| !! | CTCAAAAAAAAAAAAAATCA+AGG | + | chr2_4:20989393-20989412 | Msa0320480:intron | 15.0% |
| !! | AAAAAAAAAAAAAATCAAGG+TGG | + | chr2_4:20989396-20989415 | Msa0320480:intron | 15.0% |
| !!! | TTTTTAACCTAAAAAAAAAG+CGG | + | chr2_4:20989877-20989896 | Msa0320480:intron | 15.0% |
| !! | ATATATGAAGTTCAAAAATA+AGG | - | chr2_4:20989907-20989926 | None:intergenic | 15.0% |
| !!! | TTATTTTTGAACTTCATATA+TGG | + | chr2_4:20989906-20989925 | Msa0320480:intron | 15.0% |
| !! | TATAATTTCTCTATCATAAA+TGG | + | chr2_4:20990139-20990158 | Msa0320480:intron | 15.0% |
| !! | TAAAGTGTAATTTAAATATG+TGG | + | chr2_4:20990416-20990435 | Msa0320480:intron | 15.0% |
| !!! | TTAATATTTTAGATATGCTT+TGG | - | chr2_4:20990952-20990971 | None:intergenic | 15.0% |
| !! | TTATTTGAGTAAAAAAAACA+TGG | - | chr2_4:20990980-20990999 | None:intergenic | 15.0% |
| !! | TTAACTAAAATACAATACAA+TGG | - | chr2_4:20991895-20991914 | None:intergenic | 15.0% |
| !!! | TTTGTTTTATTTTATGGTAA+GGG | - | chr2_4:20992170-20992189 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTATTTTATGGTA+AGG | - | chr2_4:20992171-20992190 | None:intergenic | 15.0% |
| !!! | TACTCTTTTGTTTTATTTTA+TGG | - | chr2_4:20992176-20992195 | None:intergenic | 15.0% |
| !!! | TTTGTTTTATTTTATGGTAA+GGG | - | chr2_4:20992170-20992189 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTATTTTATGGTA+AGG | - | chr2_4:20992171-20992190 | None:intergenic | 15.0% |
| !!! | TACTCTTTTGTTTTATTTTA+TGG | - | chr2_4:20992176-20992195 | None:intergenic | 15.0% |
| !! | TTATAGTTTCTTAAAATTTG+TGG | + | chr2_4:20992852-20992871 | Msa0320480:intron | 15.0% |
| !! | GAAATATAAATTGGAAATAT+TGG | - | chr2_4:20992888-20992907 | None:intergenic | 15.0% |
| !!! | CATCATTTTGAAATATAAAT+TGG | - | chr2_4:20992897-20992916 | None:intergenic | 15.0% |
| !! | ACATTTAGAAGAAAAAAAAT+AGG | - | chr2_4:20993230-20993249 | None:intergenic | 15.0% |
| !! | CATTGTAAATAATAAATAAC+AGG | + | chr2_4:20993520-20993539 | Msa0320480:intron | 15.0% |
| !! | TTTATTATTCTCCAAAATGT+TGG | - | chr2_4:20988370-20988389 | None:intergenic | 20.0% |
| !! | GTATATGTTTGATTAAATTC+AGG | + | chr2_4:20989045-20989064 | Msa0320480:intron | 20.0% |
| !! | ATATATGAACAATCTATAGT+TGG | - | chr2_4:20989458-20989477 | None:intergenic | 20.0% |
| !! | AAATTTCATCTAAATTTCTG+TGG | + | chr2_4:20989546-20989565 | Msa0320480:intron | 20.0% |
| !! | AAAAGCAATATTAAGCTAAT+AGG | + | chr2_4:20989696-20989715 | Msa0320480:intron | 20.0% |
| !! | ATTCAAATAATTGTTGTCAA+TGG | + | chr2_4:20989799-20989818 | Msa0320480:intron | 20.0% |
| !! | ATCATAAAAGTTGTCATTAA+TGG | - | chr2_4:20989990-20990009 | None:intergenic | 20.0% |
| !! | TGATTAAAGTTCAAATGTAT+TGG | + | chr2_4:20990663-20990682 | Msa0320480:intron | 20.0% |
| !!! | TACCATTTTTATTTGCTTAA+AGG | + | chr2_4:20990768-20990787 | Msa0320480:intron | 20.0% |
| !! | TACCTTTAAGCAAATAAAAA+TGG | - | chr2_4:20990773-20990792 | None:intergenic | 20.0% |
| !! | TGTTCAAATTACAAAGTTAT+AGG | + | chr2_4:20991151-20991170 | Msa0320480:intron | 20.0% |
| !! | GTTCAAATTACAAAGTTATA+GGG | + | chr2_4:20991152-20991171 | Msa0320480:intron | 20.0% |
| !! | TTGAACAATATATAAATGAG+AGG | + | chr2_4:20991317-20991336 | Msa0320480:intron | 20.0% |
| !! | ATATACCAAATATCTTAAAG+TGG | + | chr2_4:20991344-20991363 | Msa0320480:intron | 20.0% |
| !!! | AAATACCACTTTAAGATATT+TGG | - | chr2_4:20991352-20991371 | None:intergenic | 20.0% |
| !! | TTATACATCTTAGTATAGTT+GGG | + | chr2_4:20991648-20991667 | Msa0320480:intron | 20.0% |
| !!! | TTGTTTTATTTTATGGTAAG+GGG | - | chr2_4:20992169-20992188 | None:intergenic | 20.0% |
| !!! | TTGTTTTATTTTATGGTAAG+GGG | - | chr2_4:20992169-20992188 | None:intergenic | 20.0% |
| !! | TAATACCTTCTTATAAATTG+TGG | + | chr2_4:20992585-20992604 | Msa0320480:intron | 20.0% |
| !! | GTTAATATATGTACTGTATT+TGG | + | chr2_4:20993003-20993022 | Msa0320480:intron | 20.0% |
| !!! | TCGTTTTTCTTCTTTTTAAA+CGG | + | chr2_4:20993087-20993106 | Msa0320480:CDS | 20.0% |
| !! | GTAGTTTCAATTTCTTCTTT+TGG | - | chr2_4:20987998-20988017 | None:intergenic | 25.0% |
| ! | AAAAGGAATGAATATTAGGA+GGG | - | chr2_4:20988105-20988124 | None:intergenic | 25.0% |
| ! | AGTGAAAAGGAATGAATATT+AGG | - | chr2_4:20988109-20988128 | None:intergenic | 25.0% |
| !!! | TTTTCTTAATTTGTTGCTAC+AGG | + | chr2_4:20988205-20988224 | Msa0320480:intron | 25.0% |
| !! | TATTGTCTCAATTTTGCTAA+TGG | + | chr2_4:20988310-20988329 | Msa0320480:intron | 25.0% |
| !! | ACTATGTTGTTTGAATTTAG+AGG | + | chr2_4:20988857-20988876 | Msa0320480:intron | 25.0% |
| !!! | TGATTAGTGACTTTTTTATG+AGG | + | chr2_4:20988993-20989012 | Msa0320480:intron | 25.0% |
| ! | TTAATTCTCTCGTATTAACT+GGG | + | chr2_4:20989425-20989444 | Msa0320480:intron | 25.0% |
| ! | GTTAAAAAGTTGTTGCAAAA+TGG | + | chr2_4:20990107-20990126 | Msa0320480:intron | 25.0% |
| ! | ATTTCTCTATCATAAATGGT+AGG | + | chr2_4:20990143-20990162 | Msa0320480:intron | 25.0% |
| ! | TTACACGTGTGTATTTAAAA+TGG | + | chr2_4:20990310-20990329 | Msa0320480:intron | 25.0% |
| !!! | ATACAAGTTTTTTTTGTGTG+TGG | - | chr2_4:20990368-20990387 | None:intergenic | 25.0% |
| !! | GTTCTTATTTAATGAGTAGA+CGG | + | chr2_4:20990452-20990471 | Msa0320480:intron | 25.0% |
| !! | TTCTTATTTAATGAGTAGAC+GGG | + | chr2_4:20990453-20990472 | Msa0320480:intron | 25.0% |
| !!! | GTTTTTTTTCTTAAAGAGAG+TGG | - | chr2_4:20991046-20991065 | None:intergenic | 25.0% |
| !!! | TGTTTTTATAGGAGTTGAAA+TGG | - | chr2_4:20991092-20991111 | None:intergenic | 25.0% |
| ! | CTTATACATCTTAGTATAGT+TGG | + | chr2_4:20991647-20991666 | Msa0320480:intron | 25.0% |
| !! | ACTGACTTATTAAGTTAGTT+AGG | - | chr2_4:20991745-20991764 | None:intergenic | 25.0% |
| ! | TTAATAAGTCAGTTACTTGT+GGG | + | chr2_4:20991752-20991771 | Msa0320480:intron | 25.0% |
| ! | TAACTAACCTAACTAATTGA+TGG | + | chr2_4:20991785-20991804 | Msa0320480:intron | 25.0% |
| ! | TGTAATTCCATCAATTAGTT+AGG | - | chr2_4:20991795-20991814 | None:intergenic | 25.0% |
| ! | ATTAGATAACCAAAGACTAA+GGG | - | chr2_4:20992408-20992427 | None:intergenic | 25.0% |
| ! | TATTAGATAACCAAAGACTA+AGG | - | chr2_4:20992409-20992428 | None:intergenic | 25.0% |
| !! | CAACAAGACAATACAATTTT+TGG | - | chr2_4:20992984-20993003 | None:intergenic | 25.0% |
| ! | AAAAGAAGAAAAACGAAAGA+AGG | - | chr2_4:20993083-20993102 | None:intergenic | 25.0% |
| !! | TTTTTCTTCTTTTTAAACGG+CGG | + | chr2_4:20993090-20993109 | Msa0320480:CDS | 25.0% |
| !!! | CCACTATTTTTACAATGAAT+TGG | - | chr2_4:20993303-20993322 | None:intergenic | 25.0% |
| ! | CCAATTCATTGTAAAAATAG+TGG | + | chr2_4:20993300-20993319 | Msa0320480:intron | 25.0% |
| ! | AATAAATAACAGGTACCAAA+CGG | + | chr2_4:20993530-20993549 | Msa0320480:intron | 25.0% |
| ! | AGTTTCAAAGCTATATATGT+TGG | + | chr2_4:20993733-20993752 | Msa0320480:three_prime_UTR | 25.0% |
| ! | GTTTCAAAGCTATATATGTT+GGG | + | chr2_4:20993734-20993753 | Msa0320480:three_prime_UTR | 25.0% |
| !! | TATTGCTTGATATTTTTCCA+AGG | + | chr2_4:20993772-20993791 | Msa0320480:three_prime_UTR | 25.0% |
| !! | AGAGTCAATGAATTTTCATT+TGG | + | chr2_4:20993796-20993815 | Msa0320480:three_prime_UTR | 25.0% |
| ! | ATTGCATTCAAATATACCAA+AGG | - | chr2_4:20993962-20993981 | None:intergenic | 25.0% |
| AAGAAGAGTTTCTTATTGTC+TGG | - | chr2_4:20987931-20987950 | None:intergenic | 30.0% | |
| !! | TCTTTTGGTGTGCATATTTA+TGG | - | chr2_4:20987983-20988002 | None:intergenic | 30.0% |
| ATAACTCCAACAAAGAAACT+TGG | - | chr2_4:20988060-20988079 | None:intergenic | 30.0% | |
| AGTTTCTTTGTTGGAGTTAT+AGG | + | chr2_4:20988060-20988079 | Msa0320480:CDS | 30.0% | |
| GAAAAGGAATGAATATTAGG+AGG | - | chr2_4:20988106-20988125 | None:intergenic | 30.0% | |
| ! | TATAATGCAGACCAACATTT+TGG | + | chr2_4:20988356-20988375 | Msa0320480:intron | 30.0% |
| TTAAGCAATGTGCATATGTA+AGG | - | chr2_4:20988424-20988443 | None:intergenic | 30.0% | |
| TACTATGGAACTATAAAAGC+TGG | + | chr2_4:20988460-20988479 | Msa0320480:CDS | 30.0% | |
| !! | ATATTCGTACCCTCATTTTT+GGG | - | chr2_4:20988567-20988586 | None:intergenic | 30.0% |
| ! | TATATTCGTACCCTCATTTT+TGG | - | chr2_4:20988568-20988587 | None:intergenic | 30.0% |
| CAACATAGTTCAAATATCCT+CGG | - | chr2_4:20988846-20988865 | None:intergenic | 30.0% | |
| GATTACTACTCAATTAGCAT+TGG | + | chr2_4:20989123-20989142 | Msa0320480:CDS | 30.0% | |
| ! | GCTTTGAACATTCTTATGTA+TGG | + | chr2_4:20989187-20989206 | Msa0320480:CDS | 30.0% |
| GTTAATTCTCTCGTATTAAC+TGG | + | chr2_4:20989424-20989443 | Msa0320480:intron | 30.0% | |
| AATTTCTGTGGCAAATATGA+TGG | + | chr2_4:20989558-20989577 | Msa0320480:intron | 30.0% | |
| GATTATAAGAAGCCTGAAAT+TGG | - | chr2_4:20989588-20989607 | None:intergenic | 30.0% | |
| GCAATATTTGTGTCTGAATA+TGG | + | chr2_4:20989740-20989759 | Msa0320480:intron | 30.0% | |
| TATTTGTGTCTGAATATGGT+TGG | + | chr2_4:20989744-20989763 | Msa0320480:intron | 30.0% | |
| AATTGTTGTCAATGGTAAGT+TGG | + | chr2_4:20989807-20989826 | Msa0320480:intron | 30.0% | |
| ATAAGGAGAACCACTTATTT+GGG | - | chr2_4:20989858-20989877 | None:intergenic | 30.0% | |
| AATAAGGAGAACCACTTATT+TGG | - | chr2_4:20989859-20989878 | None:intergenic | 30.0% | |
| !!! | ATGGCTCTTGGTTTTTTATT+AGG | + | chr2_4:20989925-20989944 | Msa0320480:intron | 30.0% |
| !!! | TGGCTCTTGGTTTTTTATTA+GGG | + | chr2_4:20989926-20989945 | Msa0320480:intron | 30.0% |
| ! | ACGTGTGTATTTAAAATGGT+CGG | + | chr2_4:20990314-20990333 | Msa0320480:intron | 30.0% |
| ATGAATCTAGATAAAACGAG+TGG | + | chr2_4:20990844-20990863 | Msa0320480:intron | 30.0% | |
| AGTAAGACTAATTCTTGATC+CGG | - | chr2_4:20991129-20991148 | None:intergenic | 30.0% | |
| AGATAGACAAGAGATAAATG+AGG | - | chr2_4:20991225-20991244 | None:intergenic | 30.0% | |
| TGTGAGTAAGAGTTCTATAT+TGG | + | chr2_4:20991279-20991298 | Msa0320480:intron | 30.0% | |
| AGTAAGAGTTCTATATTGGT+TGG | + | chr2_4:20991283-20991302 | Msa0320480:intron | 30.0% | |
| ! | TTCTATATTGGTTGGAAAAG+TGG | + | chr2_4:20991291-20991310 | Msa0320480:intron | 30.0% |
| GTCTAATATGATAATTCCTC+AGG | + | chr2_4:20991397-20991416 | Msa0320480:intron | 30.0% | |
| AGAGAAAAATGTTGAGTCAT+GGG | - | chr2_4:20991427-20991446 | None:intergenic | 30.0% | |
| TGCAAGCAACTAACTAAATA+AGG | - | chr2_4:20991712-20991731 | None:intergenic | 30.0% | |
| ! | ATTAAGTTAGTTAGGTTGCT+TGG | - | chr2_4:20991737-20991756 | None:intergenic | 30.0% |
| CTTAATAAGTCAGTTACTTG+TGG | + | chr2_4:20991751-20991770 | Msa0320480:intron | 30.0% | |
| !!! | TTTTATTTTATGGTAAGGGG+AGG | - | chr2_4:20992166-20992185 | None:intergenic | 30.0% |
| GGTATGAAAAAACAAGATTG+AGG | - | chr2_4:20992119-20992138 | None:intergenic | 30.0% | |
| !!! | TTTTATTTTATGGTAAGGGG+AGG | - | chr2_4:20992166-20992185 | None:intergenic | 30.0% |
| !!! | TCTTCTTAGTCTTTGGTTTT+TGG | + | chr2_4:20992559-20992578 | Msa0320480:intron | 30.0% |
| CTCAACCACAATTTATAAGA+AGG | - | chr2_4:20992593-20992612 | None:intergenic | 30.0% | |
| TCTTTGGATTGAAAGGTTAA+TGG | - | chr2_4:20992693-20992712 | None:intergenic | 30.0% | |
| TGGTTGTAACTTTCAGAAAA+CGG | + | chr2_4:20993023-20993042 | Msa0320480:intron | 30.0% | |
| AAGAAAAACGAAAGAAGGAA+TGG | - | chr2_4:20993078-20993097 | None:intergenic | 30.0% | |
| ! | ATCAAGATAATAAGAGCACA+TGG | - | chr2_4:20993178-20993197 | None:intergenic | 30.0% |
| GCACATCAAATGTAAAATTG+TGG | - | chr2_4:20993404-20993423 | None:intergenic | 30.0% | |
| GAAGCATAGTTCAAACAAAT+TGG | + | chr2_4:20993619-20993638 | Msa0320480:CDS | 30.0% | |
| AGTTCAAACAAATTGGAAGA+AGG | + | chr2_4:20993626-20993645 | Msa0320480:CDS | 30.0% | |
| TGAAAGCAAAATGACTAGAT+AGG | - | chr2_4:20993713-20993732 | None:intergenic | 30.0% | |
| !! | AAAATTCATTGACTCTTCCT+TGG | - | chr2_4:20993792-20993811 | None:intergenic | 30.0% |
| TCTTAAAATCTGGGCATATA+AGG | - | chr2_4:20993938-20993957 | None:intergenic | 30.0% | |
| ! | CTTGTTTCTTAGTTTCCTCA+TGG | + | chr2_4:20988029-20988048 | Msa0320480:exon | 35.0% |
| GTTAGTGCAAAAGAGTGAAA+AGG | - | chr2_4:20988122-20988141 | None:intergenic | 35.0% | |
| ! | CTCTTTTGCACTAACCTTAA+TGG | + | chr2_4:20988127-20988146 | Msa0320480:intron | 35.0% |
| TTTGCACTAACCTTAATGGA+TGG | + | chr2_4:20988131-20988150 | Msa0320480:intron | 35.0% | |
| AAGATTGGTACCATCCATTA+AGG | - | chr2_4:20988144-20988163 | None:intergenic | 35.0% | |
| TATTGATCCATGCCCAAAAA+TGG | + | chr2_4:20988164-20988183 | Msa0320480:intron | 35.0% | |
| !! | GAAATTTCCATTTTTGGGCA+TGG | - | chr2_4:20988174-20988193 | None:intergenic | 35.0% |
| CATTGCTTAACTCTTCATTG+TGG | + | chr2_4:20988434-20988453 | Msa0320480:CDS | 35.0% | |
| TCTTCATTGTGGACTTACTA+TGG | + | chr2_4:20988445-20988464 | Msa0320480:CDS | 35.0% | |
| !! | TATTCGTACCCTCATTTTTG+GGG | - | chr2_4:20988566-20988585 | None:intergenic | 35.0% |
| ! | TGACATTTTACAATGTTCCG+AGG | + | chr2_4:20988826-20988845 | Msa0320480:intron | 35.0% |
| ! | TACTACTCAATTAGCATTGG+AGG | + | chr2_4:20989126-20989145 | Msa0320480:CDS | 35.0% |
| ! | ACTACTCAATTAGCATTGGA+GGG | + | chr2_4:20989127-20989146 | Msa0320480:CDS | 35.0% |
| TTCATGTTATAGGCCAATCA+AGG | + | chr2_4:20989357-20989376 | Msa0320480:intron | 35.0% | |
| !! | TATGATGGACAACCAATTTC+AGG | + | chr2_4:20989573-20989592 | Msa0320480:intron | 35.0% |
| TGTCTATAGAGATGCTTGAA+AGG | + | chr2_4:20989616-20989635 | Msa0320480:intron | 35.0% | |
| CTTGTCACATACTGATACTT+TGG | + | chr2_4:20989769-20989788 | Msa0320480:intron | 35.0% | |
| ATATCTTTCCCCCAAATAAG+TGG | + | chr2_4:20989845-20989864 | Msa0320480:intron | 35.0% | |
| TAAGGAGAACCACTTATTTG+GGG | - | chr2_4:20989857-20989876 | None:intergenic | 35.0% | |
| !!! | AGGAGAACCGCTTTTTTTTT+AGG | - | chr2_4:20989887-20989906 | None:intergenic | 35.0% |
| TGAACTTCATATATGGCTCT+TGG | + | chr2_4:20989913-20989932 | Msa0320480:intron | 35.0% | |
| !!! | GGCTCTTGGTTTTTTATTAG+GGG | + | chr2_4:20989927-20989946 | Msa0320480:intron | 35.0% |
| !!! | GCTCTTGGTTTTTTATTAGG+GGG | + | chr2_4:20989928-20989947 | Msa0320480:intron | 35.0% |
| AATTCTACATAGCTGTGTGA+TGG | - | chr2_4:20990285-20990304 | None:intergenic | 35.0% | |
| !! | TGGGACATCGATGTTTTTAT+AGG | - | chr2_4:20991103-20991122 | None:intergenic | 35.0% |
| GTAAGACTAATTCTTGATCC+GGG | - | chr2_4:20991128-20991147 | None:intergenic | 35.0% | |
| AGAAAAATGTTGAGTCATGG+GGG | - | chr2_4:20991425-20991444 | None:intergenic | 35.0% | |
| GAGAAAAATGTTGAGTCATG+GGG | - | chr2_4:20991426-20991445 | None:intergenic | 35.0% | |
| CAGAGAAAAATGTTGAGTCA+TGG | - | chr2_4:20991428-20991447 | None:intergenic | 35.0% | |
| ! | AGGGAAAGTCTTTAAGTTCT+TGG | + | chr2_4:20991585-20991604 | Msa0320480:intron | 35.0% |
| TAGTTGGGTTTACAAGTCAT+TGG | + | chr2_4:20991663-20991682 | Msa0320480:intron | 35.0% | |
| TTACATGCAGATAATGACTG+CGG | - | chr2_4:20991942-20991961 | None:intergenic | 35.0% | |
| TTTGAACCATCTAACTTCGA+TGG | - | chr2_4:20991985-20992004 | None:intergenic | 35.0% | |
| !!! | ATCCCTTAGTCTTTGGTTTT+TGG | + | chr2_4:20992242-20992261 | Msa0320480:intron | 35.0% |
| AGCCAAAAACCAAAGACTAA+GGG | - | chr2_4:20992247-20992266 | None:intergenic | 35.0% | |
| AAGCCAAAAACCAAAGACTA+AGG | - | chr2_4:20992248-20992267 | None:intergenic | 35.0% | |
| !!! | ATCCCTTAGTCTTTGGTTTT+TGG | + | chr2_4:20992242-20992261 | Msa0320480:intron | 35.0% |
| AGCCAAAAACCAAAGACTAA+GGG | - | chr2_4:20992247-20992266 | None:intergenic | 35.0% | |
| CCAAAGACTAAGAAGACTAA+GGG | - | chr2_4:20992555-20992574 | None:intergenic | 35.0% | |
| ACCAAAGACTAAGAAGACTA+AGG | - | chr2_4:20992556-20992575 | None:intergenic | 35.0% | |
| AGATTGTTTGCTTGAAAGGA+GGG | - | chr2_4:20992648-20992667 | None:intergenic | 35.0% | |
| AAGGAGATTGTTTGCTTGAA+AGG | - | chr2_4:20992652-20992671 | None:intergenic | 35.0% | |
| GATGTTCTCTTTGGATTGAA+AGG | - | chr2_4:20992700-20992719 | None:intergenic | 35.0% | |
| TTGTAACTTTCAGAAAACGG+TGG | + | chr2_4:20993026-20993045 | Msa0320480:intron | 35.0% | |
| TTGTTCGTGATTCCATTCTT+GGG | + | chr2_4:20993136-20993155 | Msa0320480:CDS | 35.0% | |
| CTATACAGTTAGTGTTGCAT+GGG | + | chr2_4:20993573-20993592 | Msa0320480:CDS | 35.0% | |
| CAAACAAATTGGAAGAAGGA+TGG | + | chr2_4:20993630-20993649 | Msa0320480:CDS | 35.0% | |
| ACCAAAGGCTCTTAAAATCT+GGG | - | chr2_4:20993947-20993966 | None:intergenic | 35.0% | |
| TACCAAAGGCTCTTAAAATC+TGG | - | chr2_4:20993948-20993967 | None:intergenic | 35.0% | |
| TAGGCAGAAGAGTGAGAATA+AGG | - | chr2_4:20987959-20987978 | None:intergenic | 40.0% | |
| TGGTGTGCATATTTATGGCT+AGG | - | chr2_4:20987978-20987997 | None:intergenic | 40.0% | |
| GCAGATCCAAGTTTCTTTGT+TGG | + | chr2_4:20988051-20988070 | Msa0320480:CDS | 40.0% | |
| GGGCATGGATCAATAAAGAT+TGG | - | chr2_4:20988159-20988178 | None:intergenic | 40.0% | |
| AGAGTGTAAAGAGCTTACAC+AGG | - | chr2_4:20988262-20988281 | None:intergenic | 40.0% | |
| AAAAGCTGGAGAATACCTTG+TGG | + | chr2_4:20988474-20988493 | Msa0320480:CDS | 40.0% | |
| TATATGCACCCCCAAAAATG+AGG | + | chr2_4:20988554-20988573 | Msa0320480:CDS | 40.0% | |
| ATATGCACCCCCAAAAATGA+GGG | + | chr2_4:20988555-20988574 | Msa0320480:CDS | 40.0% | |
| !! | ATTCGTACCCTCATTTTTGG+GGG | - | chr2_4:20988565-20988584 | None:intergenic | 40.0% |
| TGAAGACTGCAATTCTTGCT+GGG | + | chr2_4:20989068-20989087 | Msa0320480:CDS | 40.0% | |
| ! | TGCAATTCTTGCTGGGATTT+TGG | + | chr2_4:20989075-20989094 | Msa0320480:CDS | 40.0% |
| AAACTTACCATGACAGCAAG+AGG | - | chr2_4:20989217-20989236 | None:intergenic | 40.0% | |
| TTGCTGTCATGGTAAGTTTC+TGG | + | chr2_4:20989218-20989237 | Msa0320480:intron | 40.0% | |
| ATGTTATAGGCCAATCAAGG+TGG | + | chr2_4:20989360-20989379 | Msa0320480:intron | 40.0% | |
| ATTCTCTCGTATTAACTGGG+AGG | + | chr2_4:20989428-20989447 | Msa0320480:intron | 40.0% | |
| AAGGAGAACCACTTATTTGG+GGG | - | chr2_4:20989856-20989875 | None:intergenic | 40.0% | |
| ACTCTATTAGTACTGTCCCA+CGG | + | chr2_4:20990167-20990186 | Msa0320480:intron | 40.0% | |
| AGAAAAAAAATGTGCCCCGT+GGG | - | chr2_4:20990186-20990205 | None:intergenic | 40.0% | |
| TGTTGACAATGCTTGCTTGA+TGG | + | chr2_4:20990229-20990248 | Msa0320480:intron | 40.0% | |
| CTAGATAAAACGAGTGGCAA+AGG | + | chr2_4:20990850-20990869 | Msa0320480:intron | 40.0% | |
| ATAAAACGAGTGGCAAAGGA+TGG | + | chr2_4:20990854-20990873 | Msa0320480:intron | 40.0% | |
| TAAAACGAGTGGCAAAGGAT+GGG | + | chr2_4:20990855-20990874 | Msa0320480:intron | 40.0% | |
| TCTCAACACTTTGTAGTGTG+GGG | - | chr2_4:20991011-20991030 | None:intergenic | 40.0% | |
| CTCTCAACACTTTGTAGTGT+GGG | - | chr2_4:20991012-20991031 | None:intergenic | 40.0% | |
| TCTCTCAACACTTTGTAGTG+TGG | - | chr2_4:20991013-20991032 | None:intergenic | 40.0% | |
| !! | CTACAAAGTGTTGAGAGAGT+TGG | + | chr2_4:20991015-20991034 | Msa0320480:intron | 40.0% |
| CTAATTCTTGATCCGGGAAT+GGG | - | chr2_4:20991122-20991141 | None:intergenic | 40.0% | |
| ACTAATTCTTGATCCGGGAA+TGG | - | chr2_4:20991123-20991142 | None:intergenic | 40.0% | |
| ACTATGAGCAATCACACAAG+TGG | - | chr2_4:20991379-20991398 | None:intergenic | 40.0% | |
| ACGAGAGAAACAGAAGAAGT+AGG | + | chr2_4:20991565-20991584 | Msa0320480:intron | 40.0% | |
| CGAGAGAAACAGAAGAAGTA+GGG | + | chr2_4:20991566-20991585 | Msa0320480:intron | 40.0% | |
| GCATGTAATAAGCGATTGTG+TGG | + | chr2_4:20991954-20991973 | Msa0320480:intron | 40.0% | |
| GCATTTCCATCGAAGTTAGA+TGG | + | chr2_4:20991976-20991995 | Msa0320480:intron | 40.0% | |
| ! | TATTTTATGGTAAGGGGAGG+TGG | - | chr2_4:20992163-20992182 | None:intergenic | 40.0% |
| AACCAAAGACTAAGGGATGT+GGG | - | chr2_4:20992240-20992259 | None:intergenic | 40.0% | |
| AAACCAAAGACTAAGGGATG+TGG | - | chr2_4:20992241-20992260 | None:intergenic | 40.0% | |
| ! | TATTTTATGGTAAGGGGAGG+TGG | - | chr2_4:20992163-20992182 | None:intergenic | 40.0% |
| AACCAAAGACTAAGGGATGT+GGG | - | chr2_4:20992240-20992259 | None:intergenic | 40.0% | |
| TAACCAAAGACTAAGGGATG+TGG | - | chr2_4:20992402-20992421 | None:intergenic | 40.0% | |
| AACCAAAGACTAAGGGATGT+GGG | - | chr2_4:20992240-20992259 | None:intergenic | 40.0% | |
| AAACCAAAGACTAAGGGATG+TGG | - | chr2_4:20992241-20992260 | None:intergenic | 40.0% | |
| GAGCCAAAAACCAAAGACTA+AGG | - | chr2_4:20992476-20992495 | None:intergenic | 40.0% | |
| CTAAGAAGACTAAGGGATGT+GGG | - | chr2_4:20992548-20992567 | None:intergenic | 40.0% | |
| ACTAAGAAGACTAAGGGATG+TGG | - | chr2_4:20992549-20992568 | None:intergenic | 40.0% | |
| ! | CCCTTAGTCTTCTTAGTCTT+TGG | + | chr2_4:20992552-20992571 | Msa0320480:intron | 40.0% |
| GATTGTTTGCTTGAAAGGAG+GGG | - | chr2_4:20992647-20992666 | None:intergenic | 40.0% | |
| GAGATTGTTTGCTTGAAAGG+AGG | - | chr2_4:20992649-20992668 | None:intergenic | 40.0% | |
| CTTGTTCGTGATTCCATTCT+TGG | + | chr2_4:20993135-20993154 | Msa0320480:CDS | 40.0% | |
| TGTTCGTGATTCCATTCTTG+GGG | + | chr2_4:20993137-20993156 | Msa0320480:CDS | 40.0% | |
| AGTACAAATCCAGTACCGTT+TGG | - | chr2_4:20993548-20993567 | None:intergenic | 40.0% | |
| ! | AACGGTACTGGATTTGTACT+TGG | + | chr2_4:20993548-20993567 | Msa0320480:CDS | 40.0% |
| GCTATACAGTTAGTGTTGCA+TGG | + | chr2_4:20993572-20993591 | Msa0320480:CDS | 40.0% | |
| TTGCATGGGATTTACAGAGA+TGG | + | chr2_4:20993587-20993606 | Msa0320480:CDS | 40.0% | |
| ATCATGTGACTGAGTAGTTG+AGG | - | chr2_4:20993678-20993697 | None:intergenic | 40.0% | |
| GCAGAAGAGTGAGAATAAGG+TGG | - | chr2_4:20987956-20987975 | None:intergenic | 45.0% | |
| AGAAACTTGGATCTGCCATG+AGG | - | chr2_4:20988047-20988066 | None:intergenic | 45.0% | |
| TACCTTGTGGCCACTGTTAA+TGG | + | chr2_4:20988487-20988506 | Msa0320480:CDS | 45.0% | |
| GATGCCAAAGCCATTAACAG+TGG | - | chr2_4:20988500-20988519 | None:intergenic | 45.0% | |
| !! | TGTTAATGGCTTTGGCATCG+TGG | + | chr2_4:20988501-20988520 | Msa0320480:CDS | 45.0% |
| GTGAAGACTGCAATTCTTGC+TGG | + | chr2_4:20989067-20989086 | Msa0320480:CDS | 45.0% | |
| ! | GATTTTGGACGTGGTGATCT+TGG | + | chr2_4:20989090-20989109 | Msa0320480:CDS | 45.0% |
| !! | TAGTGGTGCTGTTGGTATCA+TGG | + | chr2_4:20989159-20989178 | Msa0320480:CDS | 45.0% |
| !! | AGTGGTGCTGTTGGTATCAT+GGG | + | chr2_4:20989160-20989179 | Msa0320480:CDS | 45.0% |
| ! | GGATCTAAGACCACCTTGAT+TGG | - | chr2_4:20989373-20989392 | None:intergenic | 45.0% |
| CTCTATTAGTACTGTCCCAC+GGG | + | chr2_4:20990168-20990187 | Msa0320480:intron | 45.0% | |
| TCTATTAGTACTGTCCCACG+GGG | + | chr2_4:20990169-20990188 | Msa0320480:intron | 45.0% | |
| GAGAAAAAAAATGTGCCCCG+TGG | - | chr2_4:20990187-20990206 | None:intergenic | 45.0% | |
| ! | CTACATAGCTGTGTGATGGA+TGG | - | chr2_4:20990281-20990300 | None:intergenic | 45.0% |
| CTCAACACTTTGTAGTGTGG+GGG | - | chr2_4:20991010-20991029 | None:intergenic | 45.0% | |
| AAACATCGATGTCCCATTCC+CGG | + | chr2_4:20991107-20991126 | Msa0320480:intron | 45.0% | |
| TGTGCGTAAGCTCCAATAGA+GGG | - | chr2_4:20991525-20991544 | None:intergenic | 45.0% | |
| TGTGGGGGTGATGAAAGAAA+GGG | - | chr2_4:20992206-20992225 | None:intergenic | 45.0% | |
| ATGTGGGGGTGATGAAAGAA+AGG | - | chr2_4:20992207-20992226 | None:intergenic | 45.0% | |
| TAAGGGATGTGGGAGACTAA+GGG | - | chr2_4:20992230-20992249 | None:intergenic | 45.0% | |
| TGTGGGGGTGATGAAAGAAA+GGG | - | chr2_4:20992206-20992225 | None:intergenic | 45.0% | |
| ATGTGGGGGTGATGAAAGAA+AGG | - | chr2_4:20992207-20992226 | None:intergenic | 45.0% | |
| TAAGGGATGTGGGAGACTAA+GGG | - | chr2_4:20992230-20992249 | None:intergenic | 45.0% | |
| AGTGGGGGTGATGAAAGAAA+GGG | - | chr2_4:20992439-20992458 | None:intergenic | 45.0% | |
| AAGTGGGGGTGATGAAAGAA+AGG | - | chr2_4:20992440-20992459 | None:intergenic | 45.0% | |
| AGTGGGGGTGATGAAAGAAA+GGG | - | chr2_4:20992439-20992458 | None:intergenic | 45.0% | |
| AAGTGGGGGTGATGAAAGAA+AGG | - | chr2_4:20992440-20992459 | None:intergenic | 45.0% | |
| TTGAAAGGAGGGGTTTGTGA+GGG | - | chr2_4:20992637-20992656 | None:intergenic | 45.0% | |
| TTAATGGTGAGACGTGGAAG+TGG | - | chr2_4:20992677-20992696 | None:intergenic | 45.0% | |
| GAAAGGTTAATGGTGAGACG+TGG | - | chr2_4:20992683-20992702 | None:intergenic | 45.0% | |
| TGTCGCAGAGATGTTCTCTT+TGG | - | chr2_4:20992709-20992728 | None:intergenic | 45.0% | |
| GGTGGTGAAGACAAAAAGTG+TGG | + | chr2_4:20993044-20993063 | Msa0320480:CDS | 45.0% | |
| ! | TCTTTTTAAACGGCGGCGTT+TGG | + | chr2_4:20993097-20993116 | Msa0320480:CDS | 45.0% |
| TAACAGGTACCAAACGGTAC+TGG | + | chr2_4:20993536-20993555 | Msa0320480:intron | 45.0% | |
| !! | GCCCAGATTTTAAGAGCCTT+TGG | + | chr2_4:20993943-20993962 | Msa0320480:three_prime_UTR | 45.0% |
| !!! | TATTATGAATATTTTTTTTT+AGG | + | chr2_4:20990580-20990599 | Msa0320480:intron | 5.0% |
| !!! | ATTATGAATATTTTTTTTTA+GGG | + | chr2_4:20990581-20990600 | Msa0320480:intron | 5.0% |
| AGCCATTAACAGTGGCCACA+AGG | - | chr2_4:20988492-20988511 | None:intergenic | 50.0% | |
| GTGGCCACTGTTAATGGCTT+TGG | + | chr2_4:20988493-20988512 | Msa0320480:CDS | 50.0% | |
| !! | TAATGGCTTTGGCATCGTGG+TGG | + | chr2_4:20988504-20988523 | Msa0320480:CDS | 50.0% |
| ! | TCTTGCTGGGATTTTGGACG+TGG | + | chr2_4:20989081-20989100 | Msa0320480:CDS | 50.0% |
| CTCTCGTATTAACTGGGAGG+AGG | + | chr2_4:20989431-20989450 | Msa0320480:intron | 50.0% | |
| CTCTCTCTCTCTCCCTCTAT+TGG | + | chr2_4:20991510-20991529 | Msa0320480:intron | 50.0% | |
| GTGTGCGTAAGCTCCAATAG+AGG | - | chr2_4:20991526-20991545 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr2_4:20991470-20991489 | None:intergenic | 50.0% | |
| ! | CTGTTGCTTGACATCGGTCA+TGG | - | chr2_4:20992140-20992159 | None:intergenic | 50.0% |
| ! | AGGTGGCTGTTGCTTGACAT+CGG | - | chr2_4:20992146-20992165 | None:intergenic | 50.0% |
| TGTGGGAGACTAAGGGATGT+GGG | - | chr2_4:20992223-20992242 | None:intergenic | 50.0% | |
| ATGTGGGAGACTAAGGGATG+TGG | - | chr2_4:20992224-20992243 | None:intergenic | 50.0% | |
| CTAAGGGATGTGGGAGACTA+AGG | - | chr2_4:20992231-20992250 | None:intergenic | 50.0% | |
| ! | CTCCCACATCCCTTAGTCTT+TGG | + | chr2_4:20992235-20992254 | Msa0320480:intron | 50.0% |
| ! | CTGTTGCTTGACATCGGTCA+TGG | - | chr2_4:20992140-20992159 | None:intergenic | 50.0% |
| ! | AGGTGGCTGTTGCTTGACAT+CGG | - | chr2_4:20992146-20992165 | None:intergenic | 50.0% |
| TGTGGGAGACTAAGGGATGT+GGG | - | chr2_4:20992223-20992242 | None:intergenic | 50.0% | |
| ATGTGGGAGACTAAGGGATG+TGG | - | chr2_4:20992224-20992243 | None:intergenic | 50.0% | |
| CTAAGGGATGTGGGAGACTA+AGG | - | chr2_4:20992231-20992250 | None:intergenic | 50.0% | |
| ! | CTCCCACATCCCTTAGTCTT+TGG | + | chr2_4:20992235-20992254 | Msa0320480:intron | 50.0% |
| AGGGATGTGGGAGACTAAGT+GGG | - | chr2_4:20992456-20992475 | None:intergenic | 50.0% | |
| AAGGGATGTGGGAGACTAAG+TGG | - | chr2_4:20992229-20992248 | None:intergenic | 50.0% | |
| ! | CTCCCACATCCCTTAGTCTT+TGG | + | chr2_4:20992235-20992254 | Msa0320480:intron | 50.0% |
| ACTAAGGGATGTGGGAGAGT+GGG | - | chr2_4:20992540-20992559 | None:intergenic | 50.0% | |
| CTTGAAAGGAGGGGTTTGTG+AGG | - | chr2_4:20992638-20992657 | None:intergenic | 50.0% | |
| TCCATTCTTGGGGTAAGCTC+TGG | + | chr2_4:20993147-20993166 | Msa0320480:intron | 50.0% | |
| ACCAGAGCTTACCCCAAGAA+TGG | - | chr2_4:20993151-20993170 | None:intergenic | 50.0% | |
| TTGGAGGGAGAAGCTCGTAG+TGG | + | chr2_4:20989142-20989161 | Msa0320480:CDS | 55.0% | |
| !! | GAAGCTCGTAGTGGTGCTGT+TGG | + | chr2_4:20989151-20989170 | Msa0320480:CDS | 55.0% |
| ! | TGGCTCACCTCTTGCTGTCA+TGG | + | chr2_4:20989207-20989226 | Msa0320480:CDS | 55.0% |
| TTGAACCGCTCGACCTCGAT+CGG | + | chr2_4:20992059-20992078 | Msa0320480:intron | 55.0% | |
| TGGGAGACTAAGGGATGTGG+GGG | - | chr2_4:20992221-20992240 | None:intergenic | 55.0% | |
| GTGGGAGACTAAGGGATGTG+GGG | - | chr2_4:20992222-20992241 | None:intergenic | 55.0% | |
| TGGGAGACTAAGGGATGTGG+GGG | - | chr2_4:20992221-20992240 | None:intergenic | 55.0% | |
| GTGGGAGACTAAGGGATGTG+GGG | - | chr2_4:20992222-20992241 | None:intergenic | 55.0% | |
| GGATGTGGGAGACTAAGTGG+GGG | - | chr2_4:20992454-20992473 | None:intergenic | 55.0% | |
| GGGATGTGGGAGACTAAGTG+GGG | - | chr2_4:20992455-20992474 | None:intergenic | 55.0% | |
| GAGAGTGGGAGACTAAGTGG+GGG | - | chr2_4:20992526-20992545 | None:intergenic | 55.0% | |
| GGAGAGTGGGAGACTAAGTG+GGG | - | chr2_4:20992527-20992546 | None:intergenic | 55.0% | |
| GGGAGAGTGGGAGACTAAGT+GGG | - | chr2_4:20992528-20992547 | None:intergenic | 55.0% | |
| TGGGAGAGTGGGAGACTAAG+TGG | - | chr2_4:20992529-20992548 | None:intergenic | 55.0% | |
| GACTAAGGGATGTGGGAGAG+TGG | - | chr2_4:20992541-20992560 | None:intergenic | 55.0% | |
| ! | GGGTTTGTGAGGGAGTGTGA+GGG | - | chr2_4:20992627-20992646 | None:intergenic | 55.0% |
| GTGAGACGTGGAAGTGGAGA+AGG | - | chr2_4:20992671-20992690 | None:intergenic | 55.0% | |
| TTGAGTCATGGGGGAGCCTG+AGG | - | chr2_4:20991416-20991435 | None:intergenic | 60.0% | |
| ACTGTGTCACCGTCCGATCG+AGG | - | chr2_4:20992075-20992094 | None:intergenic | 60.0% | |
| ! | GGGGTTTGTGAGGGAGTGTG+AGG | - | chr2_4:20992628-20992647 | None:intergenic | 60.0% |
| ACCGCTCGACCTCGATCGGA+CGG | + | chr2_4:20992063-20992082 | Msa0320480:intron | 65.0% | |
| ACCGTCCGATCGAGGTCGAG+CGG | - | chr2_4:20992067-20992086 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 20987882 | 20994046 | 20987882 | ID=Msa0320480;Name=Msa0320480 |
| chr2_4 | mRNA | 20987882 | 20994046 | 20987882 | ID=Msa0320480-mRNA-1;Parent=Msa0320480;Name=Msa0320480-mRNA-1;_AED=0.09;_eAED=0.09;_QI=166|1|1|1|1|1|6|328|246 |
| chr2_4 | exon | 20987882 | 20988081 | 20987882 | ID=Msa0320480-mRNA-1:exon:7715;Parent=Msa0320480-mRNA-1 |
| chr2_4 | exon | 20988227 | 20988263 | 20988227 | ID=Msa0320480-mRNA-1:exon:7716;Parent=Msa0320480-mRNA-1 |
| chr2_4 | exon | 20988366 | 20988576 | 20988366 | ID=Msa0320480-mRNA-1:exon:7717;Parent=Msa0320480-mRNA-1 |
| chr2_4 | exon | 20989067 | 20989228 | 20989067 | ID=Msa0320480-mRNA-1:exon:7718;Parent=Msa0320480-mRNA-1 |
| chr2_4 | exon | 20993039 | 20993158 | 20993039 | ID=Msa0320480-mRNA-1:exon:7719;Parent=Msa0320480-mRNA-1 |
| chr2_4 | exon | 20993542 | 20994046 | 20993542 | ID=Msa0320480-mRNA-1:exon:7720;Parent=Msa0320480-mRNA-1 |
| chr2_4 | five_prime_UTR | 20987882 | 20988047 | 20987882 | ID=Msa0320480-mRNA-1:five_prime_utr;Parent=Msa0320480-mRNA-1 |
| chr2_4 | CDS | 20988048 | 20988081 | 20988048 | ID=Msa0320480-mRNA-1:cds;Parent=Msa0320480-mRNA-1 |
| chr2_4 | CDS | 20988227 | 20988263 | 20988227 | ID=Msa0320480-mRNA-1:cds;Parent=Msa0320480-mRNA-1 |
| chr2_4 | CDS | 20988366 | 20988576 | 20988366 | ID=Msa0320480-mRNA-1:cds;Parent=Msa0320480-mRNA-1 |
| chr2_4 | CDS | 20989067 | 20989228 | 20989067 | ID=Msa0320480-mRNA-1:cds;Parent=Msa0320480-mRNA-1 |
| chr2_4 | CDS | 20993039 | 20993158 | 20993039 | ID=Msa0320480-mRNA-1:cds;Parent=Msa0320480-mRNA-1 |
| chr2_4 | CDS | 20993542 | 20993718 | 20993542 | ID=Msa0320480-mRNA-1:cds;Parent=Msa0320480-mRNA-1 |
| chr2_4 | three_prime_UTR | 20993719 | 20994046 | 20993719 | ID=Msa0320480-mRNA-1:three_prime_utr;Parent=Msa0320480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
