AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0282260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0282260 MtrunA17_Chr2g0297031 90.476 252 1 2 1 229 1 252 3.52e-165 456
Msa0282260 MtrunA17_Chr4g0020211 42.128 235 125 4 2 226 7 240 1.42e-56 180
Msa0282260 MtrunA17_Chr8g0378231 35.762 151 82 6 14 150 25 174 1.77e-19 86.7
Msa0282260 MtrunA17_Chr4g0034381 27.869 183 113 6 3 168 15 195 3.34e-18 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0282260 AT3G17365.1 66.109 239 70 4 1 229 1 238 1.83e-114 327
Msa0282260 AT3G17365.2 52.708 277 82 7 1 229 1 276 1.53e-92 273
Msa0282260 AT3G60910.1 39.738 229 127 4 2 220 7 234 8.12e-56 179
Msa0282260 AT3G60910.2 39.306 173 94 4 58 220 1 172 1.51e-36 127
Msa0282260 AT4G34360.1 29.050 179 108 7 7 168 14 190 7.63e-18 80.1
Msa0282260 AT2G31740.1 30.645 186 109 8 14 181 29 212 2.23e-14 72.4

Find 63 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAGATGCTTGAGGAAATT+TGG 0.165677 2_3:-18099264 Msa0282260:CDS
TCCAAAGTTAATGATGTTAT+TGG 0.194035 2_3:-18096496 Msa0282260:three_prime_UTR
TATTTGTATTCAACAGTAAT+TGG 0.230490 2_3:+18096267 None:intergenic
TCTATCCTTGTTGTTGGTTC+TGG 0.233828 2_3:-18100430 Msa0282260:CDS
GTTGTTGGTTCTGGTAATTC+AGG 0.253017 2_3:-18100421 Msa0282260:intron
TCCAATTAACATAAAACTTA+TGG 0.260374 2_3:+18096386 None:intergenic
GGCTCTAGTAGCTTGAGATT+TGG 0.277066 2_3:+18096288 None:intergenic
TCGATCTTCAATATGTTGTT+TGG 0.308056 2_3:+18100609 None:intergenic
GCTCTAGTAGCTTGAGATTT+GGG 0.308363 2_3:+18096289 None:intergenic
CCATCATTATTAAGTGGAAT+AGG 0.346132 2_3:+18098609 None:intergenic
ACAATTAAACTCCATGTAAT+AGG 0.352596 2_3:-18098929 Msa0282260:intron
GAGCCAAAGTAATATACTTT+TGG 0.356009 2_3:+18100485 None:intergenic
ACCAATAACATCATTAACTT+TGG 0.362275 2_3:+18096495 None:intergenic
TAACACAAATTTGTGTAGAT+TGG 0.363308 2_3:+18096563 None:intergenic
TAGTGCAAATGTATATATAA+TGG 0.365312 2_3:+18098547 None:intergenic
AGGAACTCTTGATTCTATCT+TGG 0.371492 2_3:-18099394 Msa0282260:intron
AACAAGGATAGATTGGTTCT+TGG 0.386383 2_3:+18100441 None:intergenic
AACCAATCTATCCTTGTTGT+TGG 0.393670 2_3:-18100436 Msa0282260:CDS
GGACATCGGGATTCAGTCCT+AGG 0.416500 2_3:+18098568 None:intergenic
ACAAGGATAGATTGGTTCTT+GGG 0.427283 2_3:+18100442 None:intergenic
GTACCAAAAGTATATTACTT+TGG 0.445138 2_3:-18100488 Msa0282260:CDS
GGCTAAAGGAGTCTATATTC+TGG 0.446501 2_3:-18099114 Msa0282260:intron
CCTATTCCACTTAATAATGA+TGG 0.448893 2_3:-18098609 Msa0282260:CDS
AACCAACAACAAGGATAGAT+TGG 0.452329 2_3:+18100434 None:intergenic
GAGCTTCCATCATTATTAAG+TGG 0.453928 2_3:+18098603 None:intergenic
CATATGGTGAATCATGGTAC+TGG 0.459818 2_3:-18100549 Msa0282260:CDS
GAACAAACAGTGATGGCAAC+AGG 0.463928 2_3:-18100580 Msa0282260:exon
GGAACATAGAGATTGATGAT+AGG 0.472893 2_3:+18100463 None:intergenic
AATCACAACTGTATTACAAA+TGG 0.483068 2_3:+18096363 None:intergenic
AGCAAACGTAAGCGATATAG+TGG 0.489409 2_3:+18098971 None:intergenic
ATGTATATATAATGGACATC+GGG 0.504347 2_3:+18098555 None:intergenic
ATTTAAACCAACCTATTACA+TGG 0.504757 2_3:+18098918 None:intergenic
TTATATATACATTTGCACTA+AGG 0.515855 2_3:-18098544 Msa0282260:intron
TATAGGGTTCTCAAGGCTAA+AGG 0.523386 2_3:-18099128 Msa0282260:intron
GCAACAGGTACACAAGCATA+TGG 0.530042 2_3:-18100565 Msa0282260:CDS
GACCTGGTTCGTTTGTGTAA+CGG 0.530093 2_3:+18100521 None:intergenic
TTTGGTTCTGTTATTGACAA+AGG 0.530391 2_3:-18099522 Msa0282260:intron
CACAAGCATATGGTGAATCA+TGG 0.535442 2_3:-18100555 Msa0282260:CDS
TGCAGCGTTCAGTCAAGGCA+TGG 0.540936 2_3:-18100194 Msa0282260:intron
TTGTTTGCAGCGTTCAGTCA+AGG 0.543732 2_3:-18100199 Msa0282260:intron
GAACATTGATATTTCTTCAG+TGG 0.546761 2_3:-18100143 Msa0282260:CDS
AAAATCTGATAATCCACTCT+GGG 0.552145 2_3:-18098643 Msa0282260:CDS
AGTCAAGGCATGGTTGATGA+AGG 0.554093 2_3:-18100184 Msa0282260:CDS
AATGCGCAGTTTAGCGTGGA+AGG 0.561445 2_3:-18096595 Msa0282260:three_prime_UTR
TGGTACCAATCAAAAGGACC+TGG 0.568031 2_3:+18100505 None:intergenic
AACCGTTACACAAACGAACC+AGG 0.571683 2_3:-18100523 Msa0282260:CDS
ATAAGGATACACTTCAATTG+AGG 0.578933 2_3:+18100085 None:intergenic
AGATGCTTGAGGAAATTTGG+AGG 0.579739 2_3:-18099261 Msa0282260:intron
GGTTGATGAAGGTGGTTACA+AGG 0.580058 2_3:-18100173 Msa0282260:CDS
GACACACTATAGGGTTCTCA+AGG 0.580644 2_3:-18099135 Msa0282260:intron
AATGTATATATAATGGACAT+CGG 0.584034 2_3:+18098554 None:intergenic
AAAGAAAGAACAAACAGTGA+TGG 0.585787 2_3:-18100587 Msa0282260:exon
ACTTCAATTGAGGACGATCT+CGG 0.589584 2_3:+18100095 None:intergenic
TGCTACGTGATTCATGCTCG+TGG 0.598791 2_3:-18098952 Msa0282260:CDS
GACATCGGGATTCAGTCCTA+GGG 0.605591 2_3:+18098569 None:intergenic
TTTCAATATTTAAAACACAA+GGG 0.606296 2_3:+18096337 None:intergenic
CAAGGCATGGTTGATGAAGG+TGG 0.620512 2_3:-18100181 Msa0282260:CDS
ATATGGTGAATCATGGTACT+GGG 0.622071 2_3:-18100548 Msa0282260:CDS
CATGAATGCGCAGTTTAGCG+TGG 0.625848 2_3:-18096599 Msa0282260:exon
ACATGCTACTAAGATGCTTG+AGG 0.629503 2_3:-18099272 Msa0282260:CDS
AGCTCTGTGGATGAAACCCT+AGG 0.652280 2_3:-18098585 Msa0282260:CDS
TAATAATGATGGAAGCTCTG+TGG 0.664960 2_3:-18098598 Msa0282260:CDS
AATTACCAGAACCAACAACA+AGG 0.677098 2_3:+18100425 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAATGTTTTGTTTTT+TGG + chr2_3:18096501-18096520 None:intergenic 10.0%
!!! CAACTTTTTATTATTAATTA+AGG + chr2_3:18098500-18098519 None:intergenic 10.0%
!! ATAAATATGATTATCATATA+TGG - chr2_3:18098746-18098765 Msa0282260:intron 10.0%
!! TATCAACAATATTAATAAAA+TGG - chr2_3:18099312-18099331 Msa0282260:intron 10.0%
!! ATCAACAATATTAATAAAAT+GGG - chr2_3:18099313-18099332 Msa0282260:intron 10.0%
!! TTAATTAATTATTCAAATAG+CGG + chr2_3:18100145-18100164 None:intergenic 10.0%
!! AACTTCATAATTTAAAAACA+TGG + chr2_3:18096850-18096869 None:intergenic 15.0%
!!! ATGTTTTTAAATTATGAAGT+TGG - chr2_3:18096849-18096868 Msa0282260:intron 15.0%
!! ATTATATTTATAGAGAATTG+TGG - chr2_3:18096890-18096909 Msa0282260:intron 15.0%
!!! ATTGTTTAATTTTGTTTTTC+AGG - chr2_3:18097473-18097492 Msa0282260:intron 15.0%
!!! TTTTATTATTCTACTTTGAA+GGG + chr2_3:18098565-18098584 None:intergenic 15.0%
!!! TTTTTATTATTCTACTTTGA+AGG + chr2_3:18098566-18098585 None:intergenic 15.0%
!! TAAGTCTATTTGTATAAATA+AGG - chr2_3:18098888-18098907 Msa0282260:intron 15.0%
!! AAGTCTATTTGTATAAATAA+GGG - chr2_3:18098889-18098908 Msa0282260:intron 15.0%
!!! CATTATATTTTACAATTCTT+GGG + chr2_3:18099017-18099036 None:intergenic 15.0%
!!! ACATTATATTTTACAATTCT+TGG + chr2_3:18099018-18099037 None:intergenic 15.0%
!!! TTTCAATATTTAAAACACAA+GGG + chr2_3:18100553-18100572 None:intergenic 15.0%
!!! TTTTCAATATTTAAAACACA+AGG + chr2_3:18100554-18100573 None:intergenic 15.0%
!!! TGTGTTTTAAATATTGAAAA+TGG - chr2_3:18100554-18100573 Msa0282260:CDS 15.0%
!! CAAATGAAAAAGAATAAATG+GGG + chr2_3:18096563-18096582 None:intergenic 20.0%
!! CCAAATGAAAAAGAATAAAT+GGG + chr2_3:18096564-18096583 None:intergenic 20.0%
!!! CCATTTATTCTTTTTCATTT+GGG - chr2_3:18096562-18096581 Msa0282260:three_prime_UTR 20.0%
!! AACATGAATTAATCAACATA+AGG + chr2_3:18096822-18096841 None:intergenic 20.0%
!! AATATTTATATATGCTCTTG+CGG - chr2_3:18097095-18097114 Msa0282260:intron 20.0%
!!! TACAAAGAAGATTTTAAAAC+AGG + chr2_3:18097122-18097141 None:intergenic 20.0%
!! TTTGATATAACATGGAAAAT+TGG + chr2_3:18097208-18097227 None:intergenic 20.0%
!! TTCATAACTTTGATATAACA+TGG + chr2_3:18097216-18097235 None:intergenic 20.0%
!!! ATTTATAAATTTTGCTGAAG+TGG - chr2_3:18097242-18097261 Msa0282260:intron 20.0%
!! ATATGAATCTATGAATGAAT+GGG + chr2_3:18097398-18097417 None:intergenic 20.0%
!! TATATGAATCTATGAATGAA+TGG + chr2_3:18097399-18097418 None:intergenic 20.0%
!! TTATAAAGGAACAAGTAAAT+AGG + chr2_3:18098099-18098118 None:intergenic 20.0%
!!! AATGTATATATAATGGACAT+CGG + chr2_3:18098336-18098355 None:intergenic 20.0%
!! TAGTGCAAATGTATATATAA+TGG + chr2_3:18098343-18098362 None:intergenic 20.0%
!! TTATATATACATTTGCACTA+AGG - chr2_3:18098343-18098362 Msa0282260:intron 20.0%
!! ATTATGCTAATCATATATGT+TGG - chr2_3:18098785-18098804 Msa0282260:intron 20.0%
!! TTATGCTAATCATATATGTT+GGG - chr2_3:18098786-18098805 Msa0282260:intron 20.0%
!! ACTACTTTAACTATACTAAT+TGG + chr2_3:18098826-18098845 None:intergenic 20.0%
!! AGTCTATTTGTATAAATAAG+GGG - chr2_3:18098890-18098909 Msa0282260:intron 20.0%
!! AATATTAATAAAATGGGAGA+AGG - chr2_3:18099319-18099338 Msa0282260:intron 20.0%
!!! TTTTAGATTTACTTTTGACT+TGG - chr2_3:18099514-18099533 Msa0282260:intron 20.0%
!!! GAATTTCTTTTATAAAGAGA+GGG + chr2_3:18099816-18099835 None:intergenic 20.0%
!!! AGAATTTCTTTTATAAAGAG+AGG + chr2_3:18099817-18099836 None:intergenic 20.0%
!!! TCCATAAGTTTTATGTTAAT+TGG - chr2_3:18100500-18100519 Msa0282260:CDS 20.0%
!! TCCAATTAACATAAAACTTA+TGG + chr2_3:18100504-18100523 None:intergenic 20.0%
!! TATTTGTATTCAACAGTAAT+TGG + chr2_3:18100623-18100642 None:intergenic 20.0%
!! GTACCAAAAGTATATTACTT+TGG - chr2_3:18096399-18096418 Msa0282260:three_prime_UTR 25.0%
!!! CCCATTTATTCTTTTTCATT+TGG - chr2_3:18096561-18096580 Msa0282260:three_prime_UTR 25.0%
! CCCAAATGAAAAAGAATAAA+TGG + chr2_3:18096565-18096584 None:intergenic 25.0%
! TCAAATCTGTCTAACTATTA+AGG + chr2_3:18097304-18097323 None:intergenic 25.0%
! TAGTTAGACAGATTTGAAAA+TGG - chr2_3:18097307-18097326 Msa0282260:intron 25.0%
!!! ATATTTTTGTTGTACTAGTG+TGG - chr2_3:18097577-18097596 Msa0282260:intron 25.0%
! GAATAAATCTGAATACAACT+CGG + chr2_3:18097816-18097835 None:intergenic 25.0%
! ACAATTAAACTCCATGTAAT+AGG - chr2_3:18097958-18097977 Msa0282260:intron 25.0%
! ATTTAAACCAACCTATTACA+TGG + chr2_3:18097972-18097991 None:intergenic 25.0%
! CAAAAAATGACAATGATAAG+AGG + chr2_3:18097995-18098014 None:intergenic 25.0%
!! TTTATAAATTTGCTCCTCTT+CGG - chr2_3:18098112-18098131 Msa0282260:intron 25.0%
!!! ATGTATATATAATGGACATC+GGG + chr2_3:18098335-18098354 None:intergenic 25.0%
!! CTTACTCTCTTTTATATTCT+TGG - chr2_3:18098386-18098405 Msa0282260:intron 25.0%
! TGATTACAACTCTCAAAAAA+AGG + chr2_3:18098447-18098466 None:intergenic 25.0%
!! TCATAAATTTTACCAAACGA+AGG - chr2_3:18098464-18098483 Msa0282260:intron 25.0%
! TTAGCATAATGAAAAGTAGA+TGG + chr2_3:18098775-18098794 None:intergenic 25.0%
! ATTGAGAAATAGGAAAGAAT+AGG + chr2_3:18098973-18098992 None:intergenic 25.0%
!! GAACACTTTTATTGAGAAAT+AGG + chr2_3:18098983-18099002 None:intergenic 25.0%
!!! CAATAAAAGTGTTCTTTCTT+AGG - chr2_3:18098989-18099008 Msa0282260:CDS 25.0%
! TTAGTCACTAAAAGAGAATT+TGG - chr2_3:18099115-18099134 Msa0282260:CDS 25.0%
! TCCAATTAAATTGTGCTTAT+CGG + chr2_3:18099195-18099214 None:intergenic 25.0%
! TTCAACTAGATTATCAACAA+TGG + chr2_3:18099287-18099306 None:intergenic 25.0%
! AGAAGAAACACAGTAATAAA+GGG + chr2_3:18099405-18099424 None:intergenic 25.0%
! ATGTGATTTATTTACTACGA+TGG - chr2_3:18099462-18099481 Msa0282260:intron 25.0%
! AAAATCTTCTTCACTCTAAA+GGG + chr2_3:18099599-18099618 None:intergenic 25.0%
! TCATCTTGTTGAAAATACTT+AGG - chr2_3:18100006-18100025 Msa0282260:intron 25.0%
!!! ACAGAATGATTAGTCTAAAT+AGG + chr2_3:18100223-18100242 None:intergenic 25.0%
! TAACACAAATTTGTGTAGAT+TGG + chr2_3:18100327-18100346 None:intergenic 25.0%
! TCCAAAGTTAATGATGTTAT+TGG - chr2_3:18100391-18100410 Msa0282260:intron 25.0%
! ACCAATAACATCATTAACTT+TGG + chr2_3:18100395-18100414 None:intergenic 25.0%
! AATCACAACTGTATTACAAA+TGG + chr2_3:18100527-18100546 None:intergenic 25.0%
TCGATCTTCAATATGTTGTT+TGG + chr2_3:18096281-18096300 None:intergenic 30.0%
AAAGAAAGAACAAACAGTGA+TGG - chr2_3:18096300-18096319 Msa0282260:three_prime_UTR 30.0%
! TACTTTTGGTACCAATCAAA+AGG + chr2_3:18096391-18096410 None:intergenic 30.0%
! GAGCCAAAGTAATATACTTT+TGG + chr2_3:18096405-18096424 None:intergenic 30.0%
GAACATTGATATTTCTTCAG+TGG - chr2_3:18096744-18096763 Msa0282260:intron 30.0%
ATAAGGATACACTTCAATTG+AGG + chr2_3:18096805-18096824 None:intergenic 30.0%
TAAGACATCAAAGTGTATGT+TGG - chr2_3:18096939-18096958 Msa0282260:intron 30.0%
! TAGTATCTCTAGTGTGATTT+TGG - chr2_3:18096990-18097009 Msa0282260:intron 30.0%
!! TCTGTACATGTTTAGTTTGA+TGG + chr2_3:18097075-18097094 None:intergenic 30.0%
!! TTTGGTTCTGTTATTGACAA+AGG - chr2_3:18097365-18097384 Msa0282260:intron 30.0%
! AACTATGGACTTTTTGTTCA+TGG + chr2_3:18097662-18097681 None:intergenic 30.0%
ACAGAAGTGGTAAAAAACTA+TGG + chr2_3:18097677-18097696 None:intergenic 30.0%
! TTACCACTTCTGTTTCATTT+TGG - chr2_3:18097684-18097703 Msa0282260:intron 30.0%
AATCCAAAATGAAACAGAAG+TGG + chr2_3:18097690-18097709 None:intergenic 30.0%
TTAAACTCCATGTAATAGGT+TGG - chr2_3:18097962-18097981 Msa0282260:intron 30.0%
AGAACATTCATGTGTTAACT+TGG + chr2_3:18098020-18098039 None:intergenic 30.0%
AAGTAAATAGGATGCTTCAA+GGG + chr2_3:18098087-18098106 None:intergenic 30.0%
GAAGAGGAGCAAATTTATAA+AGG + chr2_3:18098113-18098132 None:intergenic 30.0%
AAAAATCTGATAATCCACTC+TGG - chr2_3:18098243-18098262 Msa0282260:intron 30.0%
AAAATCTGATAATCCACTCT+GGG - chr2_3:18098244-18098263 Msa0282260:intron 30.0%
CCATCATTATTAAGTGGAAT+AGG + chr2_3:18098281-18098300 None:intergenic 30.0%
CCTATTCCACTTAATAATGA+TGG - chr2_3:18098278-18098297 Msa0282260:intron 30.0%
ATATTCTTGGTCAATAGTGT+TGG - chr2_3:18098399-18098418 Msa0282260:intron 30.0%
! GATTTTCCACTTCAAATTTG+CGG + chr2_3:18098543-18098562 None:intergenic 30.0%
ATTGCTATGATATCAAGGTT+TGG + chr2_3:18098679-18098698 None:intergenic 30.0%
TATGTTGGGATATAGTATGA+CGG - chr2_3:18098800-18098819 Msa0282260:intron 30.0%
!! AATGTTGAGTTGATCATGAA+GGG - chr2_3:18098918-18098937 Msa0282260:intron 30.0%
TCCGATAAGCACAATTTAAT+TGG - chr2_3:18099191-18099210 Msa0282260:intron 30.0%
ATTGCATGTTAAGCTTAGAA+GGG + chr2_3:18099258-18099277 None:intergenic 30.0%
GAGAAGAAACACAGTAATAA+AGG + chr2_3:18099406-18099425 None:intergenic 30.0%
!! TTTCTTCTCCTTTTGAAAGT+TGG - chr2_3:18099417-18099436 Msa0282260:intron 30.0%
TGATTTATTTACTACGATGG+TGG - chr2_3:18099465-18099484 Msa0282260:intron 30.0%
CAAAATCTTCTTCACTCTAA+AGG + chr2_3:18099600-18099619 None:intergenic 30.0%
!!! TTCGGTTTTCTAGTTTCTAT+CGG + chr2_3:18099630-18099649 None:intergenic 30.0%
ACTAATGCACAATTTCACTT+CGG + chr2_3:18099648-18099667 None:intergenic 30.0%
! TCTTTACAATGGTGGAAATA+TGG - chr2_3:18099695-18099714 Msa0282260:intron 30.0%
! TTCTTTTATAAAGAGAGGGA+AGG + chr2_3:18099812-18099831 None:intergenic 30.0%
ATTATTCAAATAGCGGCAAT+GGG + chr2_3:18100138-18100157 None:intergenic 30.0%
AATTATTCAAATAGCGGCAA+TGG + chr2_3:18100139-18100158 None:intergenic 30.0%
!! TGATTAGTCTAAATAGGCAA+AGG + chr2_3:18100217-18100236 None:intergenic 30.0%
TCTGTTATAATCTTTCTGAC+AGG - chr2_3:18100238-18100257 Msa0282260:intron 30.0%
ATATGGTGAATCATGGTACT+GGG - chr2_3:18096339-18096358 Msa0282260:three_prime_UTR 35.0%
! GGAACATAGAGATTGATGAT+AGG + chr2_3:18096427-18096446 None:intergenic 35.0%
! ACAAGGATAGATTGGTTCTT+GGG + chr2_3:18096448-18096467 None:intergenic 35.0%
! AACAAGGATAGATTGGTTCT+TGG + chr2_3:18096449-18096468 None:intergenic 35.0%
! AACCAATCTATCCTTGTTGT+TGG - chr2_3:18096451-18096470 Msa0282260:three_prime_UTR 35.0%
AACCAACAACAAGGATAGAT+TGG + chr2_3:18096456-18096475 None:intergenic 35.0%
AATTACCAGAACCAACAACA+AGG + chr2_3:18096465-18096484 None:intergenic 35.0%
! ACCTTTTGTGTTATGCATGT+GGG - chr2_3:18096626-18096645 Msa0282260:CDS 35.0%
ATGTGGGCATGTAAATTTCA+AGG - chr2_3:18096642-18096661 Msa0282260:intron 35.0%
TAGAGAATTGTGGTCAAATG+CGG - chr2_3:18096900-18096919 Msa0282260:intron 35.0%
!! GTTTAGTTTGATGGTGAGTT+TGG + chr2_3:18097066-18097085 None:intergenic 35.0%
AGGAACTCTTGATTCTATCT+TGG - chr2_3:18097493-18097512 Msa0282260:intron 35.0%
! AAGACTAACAGTTTGCTCAT+TGG - chr2_3:18097554-18097573 Msa0282260:intron 35.0%
CTAAGATGCTTGAGGAAATT+TGG - chr2_3:18097623-18097642 Msa0282260:intron 35.0%
GTCATCAACTGCTTCAATAA+TGG + chr2_3:18097735-18097754 None:intergenic 35.0%
CAAGTAAATAGGATGCTTCA+AGG + chr2_3:18098088-18098107 None:intergenic 35.0%
TCCTCTTCGGTCAAATATAT+AGG - chr2_3:18098125-18098144 Msa0282260:intron 35.0%
TTGCCTAGTTCATTCATATC+TGG - chr2_3:18098155-18098174 Msa0282260:intron 35.0%
ACTCCAGATATGAATGAACT+AGG + chr2_3:18098161-18098180 None:intergenic 35.0%
AAGTTTCTCTGCACATATCA+CGG + chr2_3:18098213-18098232 None:intergenic 35.0%
GAGCTTCCATCATTATTAAG+TGG + chr2_3:18098287-18098306 None:intergenic 35.0%
! TAATAATGATGGAAGCTCTG+TGG - chr2_3:18098289-18098308 Msa0282260:intron 35.0%
GCACAATTGCTATGATATCA+AGG + chr2_3:18098684-18098703 None:intergenic 35.0%
GATTCAGTGAAATTGCCTTA+GGG + chr2_3:18098726-18098745 None:intergenic 35.0%
TGATTCAGTGAAATTGCCTT+AGG + chr2_3:18098727-18098746 None:intergenic 35.0%
GCATAATGAAAAGTAGATGG+AGG + chr2_3:18098772-18098791 None:intergenic 35.0%
!! CAATGTTGAGTTGATCATGA+AGG - chr2_3:18098917-18098936 Msa0282260:intron 35.0%
!! ATGTTGAGTTGATCATGAAG+GGG - chr2_3:18098919-18098938 Msa0282260:intron 35.0%
GCTTGTTCTTATAGAATGCT+CGG + chr2_3:18099076-18099095 None:intergenic 35.0%
! CTTAGTTCTTTAGTGATGTG+AGG + chr2_3:18099230-18099249 None:intergenic 35.0%
CATTGCATGTTAAGCTTAGA+AGG + chr2_3:18099259-18099278 None:intergenic 35.0%
CTAAGCTTAACATGCAATGA+AGG - chr2_3:18099260-18099279 Msa0282260:intron 35.0%
! AAGTACTGCCAACTTTCAAA+AGG + chr2_3:18099428-18099447 None:intergenic 35.0%
! TTCTTCACTCTAAAGGGTAT+TGG + chr2_3:18099593-18099612 None:intergenic 35.0%
TGCATTAGTGACTCTGATAA+TGG - chr2_3:18099659-18099678 Msa0282260:intron 35.0%
AAGAAATTCTCCTAGACTTC+AGG - chr2_3:18099827-18099846 Msa0282260:intron 35.0%
AGAAATTCTCCTAGACTTCA+GGG - chr2_3:18099828-18099847 Msa0282260:intron 35.0%
CTGAAGGAATAAAGGTTGTT+AGG + chr2_3:18099859-18099878 None:intergenic 35.0%
AGAAGAAGCTGAAGGAATAA+AGG + chr2_3:18099867-18099886 None:intergenic 35.0%
!!! GAGTGTTTTAATGAGATGAG+AGG + chr2_3:18099978-18099997 None:intergenic 35.0%
GGGAACAAATGAAAACTGAA+TGG + chr2_3:18100118-18100137 None:intergenic 35.0%
CACAAGCATATGGTGAATCA+TGG - chr2_3:18096332-18096351 Msa0282260:three_prime_UTR 40.0%
CATATGGTGAATCATGGTAC+TGG - chr2_3:18096338-18096357 Msa0282260:three_prime_UTR 40.0%
!! TCTATCCTTGTTGTTGGTTC+TGG - chr2_3:18096457-18096476 Msa0282260:three_prime_UTR 40.0%
!! GTTGTTGGTTCTGGTAATTC+AGG - chr2_3:18096466-18096485 Msa0282260:three_prime_UTR 40.0%
! CACCTTTTGTGTTATGCATG+TGG - chr2_3:18096625-18096644 Msa0282260:CDS 40.0%
ACTTCAATTGAGGACGATCT+CGG + chr2_3:18096795-18096814 None:intergenic 40.0%
! GGATTCACAATGATTTTGCC+AGG - chr2_3:18096960-18096979 Msa0282260:intron 40.0%
! TGATGATAGCGATGTTCTTG+AGG - chr2_3:18097269-18097288 Msa0282260:intron 40.0%
! GCTTTTGCATCAGAGACTTT+TGG - chr2_3:18097347-18097366 Msa0282260:intron 40.0%
ACATGCTACTAAGATGCTTG+AGG - chr2_3:18097615-18097634 Msa0282260:intron 40.0%
AGATGCTTGAGGAAATTTGG+AGG - chr2_3:18097626-18097645 Msa0282260:intron 40.0%
!! AGCAGTTGATGACACACTAT+AGG - chr2_3:18097742-18097761 Msa0282260:intron 40.0%
!! GCAGTTGATGACACACTATA+GGG - chr2_3:18097743-18097762 Msa0282260:intron 40.0%
TATAGGGTTCTCAAGGCTAA+AGG - chr2_3:18097759-18097778 Msa0282260:intron 40.0%
GGCTAAAGGAGTCTATATTC+TGG - chr2_3:18097773-18097792 Msa0282260:intron 40.0%
GTCTTAGCATTTCGCCTAAT+CGG - chr2_3:18097853-18097872 Msa0282260:intron 40.0%
TGAATGCGTGCAAAAATTGC+AGG - chr2_3:18097879-18097898 Msa0282260:intron 40.0%
CAAAAATTGCAGGTGACGTA+TGG - chr2_3:18097889-18097908 Msa0282260:intron 40.0%
AGCAAACGTAAGCGATATAG+TGG + chr2_3:18097919-18097938 None:intergenic 40.0%
GCCTATATATTTGACCGAAG+AGG + chr2_3:18098129-18098148 None:intergenic 40.0%
AGATTGCCGCAAATTTGAAG+TGG - chr2_3:18098534-18098553 Msa0282260:intron 40.0%
ATAGAAGTCAGTCAGTTAGC+TGG - chr2_3:18098857-18098876 Msa0282260:intron 40.0%
TAGAAGTCAGTCAGTTAGCT+GGG - chr2_3:18098858-18098877 Msa0282260:intron 40.0%
!! TGTTGAGTTGATCATGAAGG+GGG - chr2_3:18098920-18098939 Msa0282260:intron 40.0%
GAGAGAAATCTCTCCTCTAT+GGG + chr2_3:18098951-18098970 None:intergenic 40.0%
GGTTCTACAGATGTTACTAG+AGG + chr2_3:18099042-18099061 None:intergenic 40.0%
AGTAACATCTGTAGAACCGT+TGG - chr2_3:18099044-18099063 Msa0282260:intron 40.0%
GAGCTTGAAGCTCTTTACAA+TGG - chr2_3:18099684-18099703 Msa0282260:intron 40.0%
CTTGAAGCTCTTTACAATGG+TGG - chr2_3:18099687-18099706 Msa0282260:intron 40.0%
TAGGATATACCCTGAAGTCT+AGG + chr2_3:18099840-18099859 None:intergenic 40.0%
AAGGTTGAAGAAGAAGCTGA+AGG + chr2_3:18099875-18099894 None:intergenic 40.0%
ACACTAGTGCAGTTTCAAGA+AGG + chr2_3:18099894-18099913 None:intergenic 40.0%
GAAACTGCACTAGTGTGAAT+TGG - chr2_3:18099898-18099917 Msa0282260:intron 40.0%
GGTCCATTAGTAAATGTGAG+GGG + chr2_3:18099937-18099956 None:intergenic 40.0%
GGGTCCATTAGTAAATGTGA+GGG + chr2_3:18099938-18099957 None:intergenic 40.0%
AGGGTCCATTAGTAAATGTG+AGG + chr2_3:18099939-18099958 None:intergenic 40.0%
! AGGAAACTGATAGAGCATCA+GGG + chr2_3:18099958-18099977 None:intergenic 40.0%
GCTCTAGTAGCTTGAGATTT+GGG + chr2_3:18100601-18100620 None:intergenic 40.0%
GAACAAACAGTGATGGCAAC+AGG - chr2_3:18096307-18096326 Msa0282260:three_prime_UTR 45.0%
GCAACAGGTACACAAGCATA+TGG - chr2_3:18096322-18096341 Msa0282260:three_prime_UTR 45.0%
AACCGTTACACAAACGAACC+AGG - chr2_3:18096364-18096383 Msa0282260:three_prime_UTR 45.0%
! GACCTGGTTCGTTTGTGTAA+CGG + chr2_3:18096369-18096388 None:intergenic 45.0%
! ACGAACCAGGTCCTTTTGAT+TGG - chr2_3:18096377-18096396 Msa0282260:three_prime_UTR 45.0%
TGGTACCAATCAAAAGGACC+TGG + chr2_3:18096385-18096404 None:intergenic 45.0%
GCCCACATGCATAACACAAA+AGG + chr2_3:18096630-18096649 None:intergenic 45.0%
TTGTTTGCAGCGTTCAGTCA+AGG - chr2_3:18096688-18096707 Msa0282260:intron 45.0%
!! AGTCAAGGCATGGTTGATGA+AGG - chr2_3:18096703-18096722 Msa0282260:intron 45.0%
!! GGTTGATGAAGGTGGTTACA+AGG - chr2_3:18096714-18096733 Msa0282260:intron 45.0%
TAGAGATACTACTGCGATCC+TGG + chr2_3:18096981-18097000 None:intergenic 45.0%
TGAGTTTGGCAAGATCACAC+TGG + chr2_3:18097052-18097071 None:intergenic 45.0%
GACACACTATAGGGTTCTCA+AGG - chr2_3:18097752-18097771 Msa0282260:intron 45.0%
GGTTGAAAGTTGCCTTCGTT+TGG + chr2_3:18098479-18098498 None:intergenic 45.0%
TTGTCAAGTAAGTCCCTCCT+AGG + chr2_3:18098630-18098649 None:intergenic 45.0%
GTCTCATTTGAGTCGTGACA+GGG + chr2_3:18098657-18098676 None:intergenic 45.0%
AGTCTCAAAATGCCTCCCTA+AGG - chr2_3:18098708-18098727 Msa0282260:intron 45.0%
TCAGTGAAATTGCCTTAGGG+AGG + chr2_3:18098723-18098742 None:intergenic 45.0%
AGAAGTCAGTCAGTTAGCTG+GGG - chr2_3:18098859-18098878 Msa0282260:intron 45.0%
!! GTTGAGTTGATCATGAAGGG+GGG - chr2_3:18098921-18098940 Msa0282260:intron 45.0%
!! TTGAGTTGATCATGAAGGGG+GGG - chr2_3:18098922-18098941 Msa0282260:intron 45.0%
GGAGAGAAATCTCTCCTCTA+TGG + chr2_3:18098952-18098971 None:intergenic 45.0%
GAATGCTCGGAAATCACCAA+CGG + chr2_3:18099063-18099082 None:intergenic 45.0%
CTTATGAGAGGATCTCTCTC+TGG + chr2_3:18099746-18099765 None:intergenic 45.0%
TGTGAATTGGACCCGATGAT+GGG - chr2_3:18099911-18099930 Msa0282260:intron 45.0%
! GAGGAAACTGATAGAGCATC+AGG + chr2_3:18099959-18099978 None:intergenic 45.0%
! GGCTCTAGTAGCTTGAGATT+TGG + chr2_3:18100602-18100621 None:intergenic 45.0%
!! CAAGGCATGGTTGATGAAGG+TGG - chr2_3:18096706-18096725 Msa0282260:intron 50.0%
GCACGCATTCAAGACCGATT+AGG + chr2_3:18097870-18097889 None:intergenic 50.0%
TGCTACGTGATTCATGCTCG+TGG - chr2_3:18097935-18097954 Msa0282260:intron 50.0%
CTCTGCACATATCACGGAAG+TGG + chr2_3:18098207-18098226 None:intergenic 50.0%
AGCTCTGTGGATGAAACCCT+AGG - chr2_3:18098302-18098321 Msa0282260:intron 50.0%
GACATCGGGATTCAGTCCTA+GGG + chr2_3:18098321-18098340 None:intergenic 50.0%
GGTCTCATTTGAGTCGTGAC+AGG + chr2_3:18098658-18098677 None:intergenic 50.0%
TCTCGAGAGAGAAGCAAGAC+AGG + chr2_3:18099562-18099581 None:intergenic 50.0%
AGAGGATCTCTCTCTGGTCT+TGG + chr2_3:18099740-18099759 None:intergenic 50.0%
CGCGTCACTTCACTTATGAG+AGG + chr2_3:18099758-18099777 None:intergenic 50.0%
GTGTGAATTGGACCCGATGA+TGG - chr2_3:18099910-18099929 Msa0282260:intron 50.0%
AAATGTGAGGGGCCCATCAT+CGG + chr2_3:18099926-18099945 None:intergenic 50.0%
GGGCCCCTCACATTTACTAA+TGG - chr2_3:18099931-18099950 Msa0282260:intron 50.0%
CATGAATGCGCAGTTTAGCG+TGG - chr2_3:18100288-18100307 Msa0282260:intron 50.0%
AATGCGCAGTTTAGCGTGGA+AGG - chr2_3:18100292-18100311 Msa0282260:intron 50.0%
TGCAGCGTTCAGTCAAGGCA+TGG - chr2_3:18096693-18096712 Msa0282260:intron 55.0%
!! GGTTTTGTCAGCTCCCAGAG+TGG + chr2_3:18098260-18098279 None:intergenic 55.0%
GGACATCGGGATTCAGTCCT+AGG + chr2_3:18098322-18098341 None:intergenic 55.0%
TCCTAGGAGTGAGGACTCAC+TGG + chr2_3:18098614-18098633 None:intergenic 55.0%
AGTGAGTCCTCACTCCTAGG+AGG - chr2_3:18098613-18098632 Msa0282260:CDS 55.0%
GTGAGTCCTCACTCCTAGGA+GGG - chr2_3:18098614-18098633 Msa0282260:CDS 55.0%
GTAAGTCCCTCCTAGGAGTG+AGG + chr2_3:18098623-18098642 None:intergenic 55.0%
AATGTGAGGGGCCCATCATC+GGG + chr2_3:18099925-18099944 None:intergenic 55.0%
GCCAGTGAGTCCTCACTCCT+AGG - chr2_3:18098610-18098629 Msa0282260:CDS 60.0%
GAAGGGGGGGAAACCCATAG+AGG - chr2_3:18098935-18098954 Msa0282260:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 18096232 18100677 18096232 ID=Msa0282260;Name=Msa0282260
chr2_3 mRNA 18096232 18100677 18096232 ID=Msa0282260-mRNA-1;Parent=Msa0282260;Name=Msa0282260-mRNA-1;_AED=0.15;_eAED=0.15;_QI=87|0.87|0.77|1|0.87|0.88|9|385|229
chr2_3 exon 18096232 18096649 18096232 ID=Msa0282260-mRNA-1:exon:7454;Parent=Msa0282260-mRNA-1
chr2_3 exon 18098545 18098684 18098545 ID=Msa0282260-mRNA-1:exon:7453;Parent=Msa0282260-mRNA-1
chr2_3 exon 18098930 18099008 18098930 ID=Msa0282260-mRNA-1:exon:7452;Parent=Msa0282260-mRNA-1
chr2_3 exon 18099115 18099145 18099115 ID=Msa0282260-mRNA-1:exon:7451;Parent=Msa0282260-mRNA-1
chr2_3 exon 18099262 18099314 18099262 ID=Msa0282260-mRNA-1:exon:7450;Parent=Msa0282260-mRNA-1
chr2_3 exon 18099395 18099414 18099395 ID=Msa0282260-mRNA-1:exon:7449;Parent=Msa0282260-mRNA-1
chr2_3 exon 18099523 18099572 18099523 ID=Msa0282260-mRNA-1:exon:7448;Parent=Msa0282260-mRNA-1
chr2_3 exon 18100097 18100211 18100097 ID=Msa0282260-mRNA-1:exon:7447;Parent=Msa0282260-mRNA-1
chr2_3 exon 18100422 18100677 18100422 ID=Msa0282260-mRNA-1:exon:7446;Parent=Msa0282260-mRNA-1
chr2_3 five_prime_UTR 18100591 18100677 18100591 ID=Msa0282260-mRNA-1:five_prime_utr;Parent=Msa0282260-mRNA-1
chr2_3 CDS 18100422 18100590 18100422 ID=Msa0282260-mRNA-1:cds;Parent=Msa0282260-mRNA-1
chr2_3 CDS 18100097 18100211 18100097 ID=Msa0282260-mRNA-1:cds;Parent=Msa0282260-mRNA-1
chr2_3 CDS 18099523 18099572 18099523 ID=Msa0282260-mRNA-1:cds;Parent=Msa0282260-mRNA-1
chr2_3 CDS 18099395 18099414 18099395 ID=Msa0282260-mRNA-1:cds;Parent=Msa0282260-mRNA-1
chr2_3 CDS 18099262 18099314 18099262 ID=Msa0282260-mRNA-1:cds;Parent=Msa0282260-mRNA-1
chr2_3 CDS 18099115 18099145 18099115 ID=Msa0282260-mRNA-1:cds;Parent=Msa0282260-mRNA-1
chr2_3 CDS 18098930 18099008 18098930 ID=Msa0282260-mRNA-1:cds;Parent=Msa0282260-mRNA-1
chr2_3 CDS 18098545 18098684 18098545 ID=Msa0282260-mRNA-1:cds;Parent=Msa0282260-mRNA-1
chr2_3 CDS 18096617 18096649 18096617 ID=Msa0282260-mRNA-1:cds;Parent=Msa0282260-mRNA-1
chr2_3 three_prime_UTR 18096232 18096616 18096232 ID=Msa0282260-mRNA-1:three_prime_utr;Parent=Msa0282260-mRNA-1
Gene Sequence

>Msa0282260

ATGGCAACAGGTACACAAGCATATGGTGAATCATGGTACTGGGACAACCGTTACACAAACGAACCAGGTCCTTTTGATTGGTACCAAAAGTATATTACTTTGGCTCCTATCATCAATCTCTATGTTCCCAAGAACCAATCTATCCTTGTTGTTGGTTCTGGTAATTCAGCGTTCAGTCAAGGCATGGTTGATGAAGGTGGTTACAAGGATGTTGTGAACATTGATATTTCTTCAGTGGTCATTGATGCTATGCAGAAGAAATACCGAGATCGTCCTCAATTGAAAGACATGAGTGCTTTTGCATCAGAGACTTTTGGTTCTGTTATTGACAAAGGAACTCTTGATTCTATCTTGTGTGGAAACAATTCAAGACAACATGCTACTAAGATGCTTGAGGAAATTTGGAGGGTTCTCAAGGCTAAAGGAGTCTATATTCTGGTGACGTATGGAGCTCCACTATATCGCTTACGTTTGCTACGTGATTCATGCTCGTGGACAATTAAACTCCATGTAATAGAGAAACTTGCATCAGAAGAAAAATCTGATAATCCACTCTGGGAGCTGACAAAACCTATTCCACTTAATAATGATGGAAGCTCTGTGGATGAAACCCTAGGACTGAATCCCGATGTCCATTATATATACATTTGCACTAAGGAAATTTCTGCTAACTCAAACGTAAAAGCATGA

Protein sequence

>Msa0282260

MATGTQAYGESWYWDNRYTNEPGPFDWYQKYITLAPIINLYVPKNQSILVVGSGNSAFSQGMVDEGGYKDVVNIDISSVVIDAMQKKYRDRPQLKDMSAFASETFGSVIDKGTLDSILCGNNSRQHATKMLEEIWRVLKAKGVYILVTYGAPLYRLRLLRDSCSWTIKLHVIEKLASEEKSDNPLWELTKPIPLNNDGSSVDETLGLNPDVHYIYICTKEISANSNVKA*