Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0201060 | XP_003594886.1 | 99.576 | 236 | 1 | 0 | 1 | 236 | 1 | 236 | 2.40e-173 | 486 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0201060 | sp|Q8N6R0|EFNMT_HUMAN | 30.137 | 219 | 128 | 9 | 1 | 200 | 4 | 216 | 1.17e-26 | 110 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0201060 | G7INF4 | 99.576 | 236 | 1 | 0 | 1 | 236 | 1 | 236 | 1.15e-173 | 486 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0201060 | Msa0222340 | 0.802074 | 6.667013e-49 | -8.615850e-47 |
Msa0201060 | Msa0243720 | 0.840830 | 6.865451e-58 | -8.615850e-47 |
Msa0201060 | Msa0282260 | 0.887586 | 1.252961e-72 | -8.615850e-47 |
Msa0201060 | Msa1199560 | 0.814831 | 1.261000e-51 | -8.615850e-47 |
Msa0201060 | Msa1217810 | 0.803474 | 3.426453e-49 | -8.615850e-47 |
Msa0201060 | Msa1328700 | 0.827136 | 1.848310e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0201060 | MtrunA17_Chr2g0297031 | 93.254 | 252 | 1 | 1 | 1 | 236 | 1 | 252 | 2.30e-173 | 476 |
Msa0201060 | MtrunA17_Chr4g0020211 | 44.681 | 235 | 126 | 3 | 2 | 233 | 7 | 240 | 4.07e-64 | 200 |
Msa0201060 | MtrunA17_Chr8g0378231 | 35.526 | 152 | 88 | 5 | 14 | 157 | 25 | 174 | 1.05e-20 | 90.5 |
Msa0201060 | MtrunA17_Chr4g0034381 | 27.174 | 184 | 120 | 6 | 3 | 175 | 15 | 195 | 2.31e-19 | 84.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0201060 | AT3G17365.1 | 69.038 | 239 | 70 | 3 | 1 | 236 | 1 | 238 | 1.21e-122 | 348 |
Msa0201060 | AT3G17365.2 | 55.235 | 277 | 82 | 6 | 1 | 236 | 1 | 276 | 9.55e-101 | 294 |
Msa0201060 | AT3G60910.1 | 41.921 | 229 | 129 | 3 | 2 | 227 | 7 | 234 | 4.01e-63 | 197 |
Msa0201060 | AT3G60910.2 | 42.197 | 173 | 96 | 3 | 58 | 227 | 1 | 172 | 7.08e-44 | 146 |
Msa0201060 | AT4G34360.1 | 29.444 | 180 | 113 | 7 | 7 | 175 | 14 | 190 | 5.10e-20 | 85.9 |
Msa0201060 | AT2G31740.1 | 31.551 | 187 | 113 | 7 | 14 | 188 | 29 | 212 | 2.97e-17 | 80.9 |
Find 64 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAAGATGCTTGAGGAAATT+TGG | 0.165677 | 2_1:+21835427 | Msa0201060:CDS |
TCCAAAGTTAATGATGTTAT+TGG | 0.194035 | 2_1:+21838231 | Msa0201060:three_prime_UTR |
TATTTGTATTCAACAGTAAT+TGG | 0.230490 | 2_1:-21838460 | None:intergenic |
TCTATCCTTGTTGTTGGTTC+TGG | 0.233828 | 2_1:+21834274 | Msa0201060:CDS |
GTTGTTGGTTCTGGTAATTC+AGG | 0.253017 | 2_1:+21834283 | Msa0201060:CDS |
TCCAATTAACATAAAACTTA+TGG | 0.260374 | 2_1:-21838341 | None:intergenic |
GGCTCTAGTAGCTTGAGATT+TGG | 0.277066 | 2_1:-21838439 | None:intergenic |
TCGATCTTCAATATGTTGTT+TGG | 0.308056 | 2_1:-21834095 | None:intergenic |
GCTCTAGTAGCTTGAGATTT+GGG | 0.308363 | 2_1:-21838438 | None:intergenic |
TAGTTAGACAGATTTGAAAA+TGG | 0.318761 | 2_1:+21835111 | Msa0201060:intron |
CCATCATTATTAAGTGGAAT+AGG | 0.346132 | 2_1:-21836089 | None:intergenic |
ACAATTAAACTCCATGTAAT+AGG | 0.352596 | 2_1:+21835763 | Msa0201060:CDS |
GAGCCAAAGTAATATACTTT+TGG | 0.356009 | 2_1:-21834219 | None:intergenic |
ACCAATAACATCATTAACTT+TGG | 0.362275 | 2_1:-21838232 | None:intergenic |
TAACACAAATTTGTGTAGAT+TGG | 0.363308 | 2_1:-21838164 | None:intergenic |
TAGTGCAAATGTATATATAA+TGG | 0.365312 | 2_1:-21836151 | None:intergenic |
AGGAACTCTTGATTCTATCT+TGG | 0.371492 | 2_1:+21835297 | Msa0201060:intron |
AACAAGGATAGATTGGTTCT+TGG | 0.386383 | 2_1:-21834263 | None:intergenic |
AACCAATCTATCCTTGTTGT+TGG | 0.393670 | 2_1:+21834268 | Msa0201060:CDS |
GGACATCGGGATTCAGTCCT+AGG | 0.416500 | 2_1:-21836130 | None:intergenic |
ACAAGGATAGATTGGTTCTT+GGG | 0.427283 | 2_1:-21834262 | None:intergenic |
GTACCAAAAGTATATTACTT+TGG | 0.445138 | 2_1:+21834216 | Msa0201060:CDS |
GGCTAAAGGAGTCTATATTC+TGG | 0.446501 | 2_1:+21835577 | Msa0201060:CDS |
CCTATTCCACTTAATAATGA+TGG | 0.448893 | 2_1:+21836089 | Msa0201060:CDS |
AACCAACAACAAGGATAGAT+TGG | 0.452329 | 2_1:-21834270 | None:intergenic |
GAGCTTCCATCATTATTAAG+TGG | 0.453928 | 2_1:-21836095 | None:intergenic |
CATATGGTGAATCATGGTAC+TGG | 0.459818 | 2_1:+21834155 | Msa0201060:CDS |
GAACAAACAGTGATGGCAAC+AGG | 0.463928 | 2_1:+21834124 | Msa0201060:exon |
GGAACATAGAGATTGATGAT+AGG | 0.472893 | 2_1:-21834241 | None:intergenic |
AATCACAACTGTATTACAAA+TGG | 0.483068 | 2_1:-21838364 | None:intergenic |
AGCAAACGTAAGCGATATAG+TGG | 0.489409 | 2_1:-21835721 | None:intergenic |
ATGTATATATAATGGACATC+GGG | 0.504347 | 2_1:-21836143 | None:intergenic |
ATTTAAACCAACCTATTACA+TGG | 0.504757 | 2_1:-21835774 | None:intergenic |
TTATATATACATTTGCACTA+AGG | 0.515855 | 2_1:+21836154 | Msa0201060:CDS |
TATAGGGTTCTCAAGGCTAA+AGG | 0.523386 | 2_1:+21835563 | Msa0201060:intron |
GCAACAGGTACACAAGCATA+TGG | 0.530042 | 2_1:+21834139 | Msa0201060:CDS |
GACCTGGTTCGTTTGTGTAA+CGG | 0.530093 | 2_1:-21834183 | None:intergenic |
TTTGGTTCTGTTATTGACAA+AGG | 0.530391 | 2_1:+21835169 | Msa0201060:CDS |
CACAAGCATATGGTGAATCA+TGG | 0.535442 | 2_1:+21834149 | Msa0201060:CDS |
TGCAGCGTTCAGTCAAGGCA+TGG | 0.540936 | 2_1:+21834511 | Msa0201060:intron |
TTGTTTGCAGCGTTCAGTCA+AGG | 0.543732 | 2_1:+21834506 | Msa0201060:intron |
GAACATTGATATTTCTTCAG+TGG | 0.546761 | 2_1:+21834562 | Msa0201060:CDS |
AAAATCTGATAATCCACTCT+GGG | 0.552145 | 2_1:+21836055 | Msa0201060:CDS |
AGTCAAGGCATGGTTGATGA+AGG | 0.554093 | 2_1:+21834521 | Msa0201060:CDS |
AATGCGCAGTTTAGCGTGGA+AGG | 0.561445 | 2_1:+21838132 | Msa0201060:exon |
TGGTACCAATCAAAAGGACC+TGG | 0.568031 | 2_1:-21834199 | None:intergenic |
AACCGTTACACAAACGAACC+AGG | 0.571683 | 2_1:+21834181 | Msa0201060:CDS |
ATAAGGATACACTTCAATTG+AGG | 0.578933 | 2_1:-21834620 | None:intergenic |
AGATGCTTGAGGAAATTTGG+AGG | 0.579739 | 2_1:+21835430 | Msa0201060:CDS |
GGTTGATGAAGGTGGTTACA+AGG | 0.580058 | 2_1:+21834532 | Msa0201060:CDS |
GACACACTATAGGGTTCTCA+AGG | 0.580644 | 2_1:+21835556 | Msa0201060:intron |
AATGTATATATAATGGACAT+CGG | 0.584034 | 2_1:-21836144 | None:intergenic |
AAAGAAAGAACAAACAGTGA+TGG | 0.585787 | 2_1:+21834117 | Msa0201060:exon |
ACTTCAATTGAGGACGATCT+CGG | 0.589584 | 2_1:-21834610 | None:intergenic |
TGCTACGTGATTCATGCTCG+TGG | 0.598791 | 2_1:+21835740 | Msa0201060:CDS |
GACATCGGGATTCAGTCCTA+GGG | 0.605591 | 2_1:-21836129 | None:intergenic |
TTTCAATATTTAAAACACAA+GGG | 0.606296 | 2_1:-21838390 | None:intergenic |
CAAGGCATGGTTGATGAAGG+TGG | 0.620512 | 2_1:+21834524 | Msa0201060:CDS |
ATATGGTGAATCATGGTACT+GGG | 0.622071 | 2_1:+21834156 | Msa0201060:CDS |
CATGAATGCGCAGTTTAGCG+TGG | 0.625848 | 2_1:+21838128 | Msa0201060:exon |
ACATGCTACTAAGATGCTTG+AGG | 0.629503 | 2_1:+21835419 | Msa0201060:CDS |
AGCTCTGTGGATGAAACCCT+AGG | 0.652280 | 2_1:+21836113 | Msa0201060:CDS |
TAATAATGATGGAAGCTCTG+TGG | 0.664960 | 2_1:+21836100 | Msa0201060:CDS |
AATTACCAGAACCAACAACA+AGG | 0.677098 | 2_1:-21834279 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAAAAAATGTTTTGTTTTT+TGG | - | chr2_1:21834318-21834337 | None:intergenic | 10.0% |
!! | ATGTATAAAAATATTTATTG+CGG | + | chr2_1:21834907-21834926 | Msa0201060:intron | 10.0% |
!! | AAAACAATATATTTATACAA+AGG | - | chr2_1:21834945-21834964 | None:intergenic | 10.0% |
!!! | AAATGTTTTTTTTAGAAAAA+TGG | - | chr2_1:21835874-21835893 | None:intergenic | 10.0% |
!! | TATCAACAATATTAATAAAA+TGG | + | chr2_1:21837154-21837173 | Msa0201060:intron | 10.0% |
!! | ATCAACAATATTAATAAAAT+GGG | + | chr2_1:21837155-21837174 | Msa0201060:intron | 10.0% |
!! | AACTTCATAATTTAAAAACA+TGG | - | chr2_1:21834668-21834687 | None:intergenic | 15.0% |
!!! | ATGTTTTTAAATTATGAAGT+TGG | + | chr2_1:21834667-21834686 | Msa0201060:intron | 15.0% |
!! | ATTATATTTATAGAGAATTG+TGG | + | chr2_1:21834710-21834729 | Msa0201060:intron | 15.0% |
!!! | ATTGTTTAATTTTGTTTTTC+AGG | + | chr2_1:21835277-21835296 | Msa0201060:intron | 15.0% |
!!! | TTTTATTATTCTACATTGAA+GGG | - | chr2_1:21836376-21836395 | None:intergenic | 15.0% |
!!! | TTTTTATTATTCTACATTGA+AGG | - | chr2_1:21836377-21836396 | None:intergenic | 15.0% |
!!! | TTTCAATATTTAAAACACAA+GGG | - | chr2_1:21838393-21838412 | None:intergenic | 15.0% |
!!! | TTTTCAATATTTAAAACACA+AGG | - | chr2_1:21838394-21838413 | None:intergenic | 15.0% |
!!! | TGTGTTTTAAATATTGAAAA+TGG | + | chr2_1:21838394-21838413 | Msa0201060:three_prime_UTR | 15.0% |
!! | CAAATGAAAAAGAATAAATG+GGG | - | chr2_1:21834380-21834399 | None:intergenic | 20.0% |
!! | CCAAATGAAAAAGAATAAAT+GGG | - | chr2_1:21834381-21834400 | None:intergenic | 20.0% |
!!! | CCATTTATTCTTTTTCATTT+GGG | + | chr2_1:21834379-21834398 | Msa0201060:intron | 20.0% |
!! | AACATGAATTAATCAACATA+AGG | - | chr2_1:21834640-21834659 | None:intergenic | 20.0% |
!!! | TTTATACATGTTTAGTTTGA+TGG | - | chr2_1:21834896-21834915 | None:intergenic | 20.0% |
!! | ATTATAACATGGATATAACA+TGG | - | chr2_1:21835026-21835045 | None:intergenic | 20.0% |
!!! | TTTATAAAATTTTGCTGAAG+TGG | + | chr2_1:21835046-21835065 | Msa0201060:intron | 20.0% |
!! | AAATGAATCTATGAATGAAT+GGG | - | chr2_1:21835202-21835221 | None:intergenic | 20.0% |
!! | TAAATGAATCTATGAATGAA+TGG | - | chr2_1:21835203-21835222 | None:intergenic | 20.0% |
!! | TTATAAAGGAACACATAAAT+AGG | - | chr2_1:21835910-21835929 | None:intergenic | 20.0% |
!!! | AATGTATATATAATGGACAT+CGG | - | chr2_1:21836147-21836166 | None:intergenic | 20.0% |
!! | TAGTGCAAATGTATATATAA+TGG | - | chr2_1:21836154-21836173 | None:intergenic | 20.0% |
!! | TTATATATACATTTGCACTA+AGG | + | chr2_1:21836154-21836173 | Msa0201060:CDS | 20.0% |
!!! | AAAAAATTTAGTTTCCTAAC+AGG | + | chr2_1:21836672-21836691 | Msa0201060:intron | 20.0% |
!!! | AATTTTGTTGGCTATTTTAT+AGG | - | chr2_1:21836732-21836751 | None:intergenic | 20.0% |
!! | AATATTAATAAAATGGGAGA+AGG | + | chr2_1:21837161-21837180 | Msa0201060:intron | 20.0% |
!!! | TTTTAGATTTACTTTTGACT+TGG | + | chr2_1:21837357-21837376 | Msa0201060:intron | 20.0% |
!!! | GAATTTCTTTTATAAAGAGA+GGG | - | chr2_1:21837659-21837678 | None:intergenic | 20.0% |
!!! | AGAATTTCTTTTATAAAGAG+AGG | - | chr2_1:21837660-21837679 | None:intergenic | 20.0% |
!! | CGATTAATTATTCAAATTAG+CGG | - | chr2_1:21837982-21838001 | None:intergenic | 20.0% |
!! | ATTTGAATAATTAATCGTCA+TGG | + | chr2_1:21837985-21838004 | Msa0201060:intron | 20.0% |
!!! | TCCATAAGTTTTATGTTAAT+TGG | + | chr2_1:21838340-21838359 | Msa0201060:three_prime_UTR | 20.0% |
!! | TCCAATTAACATAAAACTTA+TGG | - | chr2_1:21838344-21838363 | None:intergenic | 20.0% |
!! | TATTTGTATTCAACAGTAAT+TGG | - | chr2_1:21838463-21838482 | None:intergenic | 20.0% |
!! | GTACCAAAAGTATATTACTT+TGG | + | chr2_1:21834216-21834235 | Msa0201060:CDS | 25.0% |
!!! | CCCATTTATTCTTTTTCATT+TGG | + | chr2_1:21834378-21834397 | Msa0201060:intron | 25.0% |
! | CCCAAATGAAAAAGAATAAA+TGG | - | chr2_1:21834382-21834401 | None:intergenic | 25.0% |
! | ATGGATATAACATGGTAAAT+TGG | - | chr2_1:21835018-21835037 | None:intergenic | 25.0% |
! | TCAAATCTGTCTAACTATTA+AGG | - | chr2_1:21835108-21835127 | None:intergenic | 25.0% |
! | TAGTTAGACAGATTTGAAAA+TGG | + | chr2_1:21835111-21835130 | Msa0201060:intron | 25.0% |
!!! | ATATTTTTGTTGTACTAGTG+TGG | + | chr2_1:21835381-21835400 | Msa0201060:intron | 25.0% |
! | GAATAAATCTGAATACAACT+CGG | - | chr2_1:21835621-21835640 | None:intergenic | 25.0% |
! | ACAATTAAACTCCATGTAAT+AGG | + | chr2_1:21835763-21835782 | Msa0201060:CDS | 25.0% |
! | ATTTAAACCAACCTATTACA+TGG | - | chr2_1:21835777-21835796 | None:intergenic | 25.0% |
! | CAAAAAATGACAATGATAAG+AGG | - | chr2_1:21835800-21835819 | None:intergenic | 25.0% |
!!! | ATGTATATATAATGGACATC+GGG | - | chr2_1:21836146-21836165 | None:intergenic | 25.0% |
!! | TACTTACTCTTTTATGTTCT+TGG | + | chr2_1:21836195-21836214 | Msa0201060:intron | 25.0% |
! | TTAGACAACTCTCAAAAAAA+AGG | - | chr2_1:21836257-21836276 | None:intergenic | 25.0% |
!! | TCATAAATTTTACCAAACGA+AGG | + | chr2_1:21836277-21836296 | Msa0201060:intron | 25.0% |
! | TTTAATCAGTGTCATGTAAA+TGG | + | chr2_1:21836909-21836928 | Msa0201060:intron | 25.0% |
! | GTAGAATATAATGTACATCT+AGG | + | chr2_1:21836931-21836950 | Msa0201060:intron | 25.0% |
! | TTCAACTAGATTATCAACAA+TGG | - | chr2_1:21837129-21837148 | None:intergenic | 25.0% |
! | AGAAGAAACACAGTAATAAA+GGG | - | chr2_1:21837248-21837267 | None:intergenic | 25.0% |
! | ATGTGATTTATTTACTACGA+TGG | + | chr2_1:21837305-21837324 | Msa0201060:intron | 25.0% |
! | AAAATCTTCTTCACTCTAAA+GGG | - | chr2_1:21837442-21837461 | None:intergenic | 25.0% |
! | TCATCTTGTTGAAAATACTT+AGG | + | chr2_1:21837843-21837862 | Msa0201060:intron | 25.0% |
!!! | ACAGAATGATTAGTCTAAAT+AGG | - | chr2_1:21838063-21838082 | None:intergenic | 25.0% |
! | TAACACAAATTTGTGTAGAT+TGG | - | chr2_1:21838167-21838186 | None:intergenic | 25.0% |
! | TCCAAAGTTAATGATGTTAT+TGG | + | chr2_1:21838231-21838250 | Msa0201060:three_prime_UTR | 25.0% |
! | ACCAATAACATCATTAACTT+TGG | - | chr2_1:21838235-21838254 | None:intergenic | 25.0% |
! | AATCACAACTGTATTACAAA+TGG | - | chr2_1:21838367-21838386 | None:intergenic | 25.0% |
TCGATCTTCAATATGTTGTT+TGG | - | chr2_1:21834098-21834117 | None:intergenic | 30.0% | |
AAAGAAAGAACAAACAGTGA+TGG | + | chr2_1:21834117-21834136 | Msa0201060:exon | 30.0% | |
! | TACTTTTGGTACCAATCAAA+AGG | - | chr2_1:21834208-21834227 | None:intergenic | 30.0% |
! | GAGCCAAAGTAATATACTTT+TGG | - | chr2_1:21834222-21834241 | None:intergenic | 30.0% |
GAACATTGATATTTCTTCAG+TGG | + | chr2_1:21834562-21834581 | Msa0201060:CDS | 30.0% | |
ATAAGGATACACTTCAATTG+AGG | - | chr2_1:21834623-21834642 | None:intergenic | 30.0% | |
AAGACATCAAAGTGTATGTT+TGG | + | chr2_1:21834760-21834779 | Msa0201060:intron | 30.0% | |
! | TAGTATCTCTAGTGTGATTT+TGG | + | chr2_1:21834811-21834830 | Msa0201060:intron | 30.0% |
!! | TTTGGTTCTGTTATTGACAA+AGG | + | chr2_1:21835169-21835188 | Msa0201060:CDS | 30.0% |
! | AACTATGGACTTTTTGTTCA+TGG | - | chr2_1:21835466-21835485 | None:intergenic | 30.0% |
! | TTACCACTTCTGTTTCATTT+TGG | + | chr2_1:21835488-21835507 | Msa0201060:intron | 30.0% |
AATCCAAAATGAAACAGAAG+TGG | - | chr2_1:21835494-21835513 | None:intergenic | 30.0% | |
TTAAACTCCATGTAATAGGT+TGG | + | chr2_1:21835767-21835786 | Msa0201060:intron | 30.0% | |
CATAAATAGGATGCTTCAAA+GGG | - | chr2_1:21835897-21835916 | None:intergenic | 30.0% | |
ACATAAATAGGATGCTTCAA+AGG | - | chr2_1:21835898-21835917 | None:intergenic | 30.0% | |
TTTATAAATTTGCGCCTCTT+CGG | + | chr2_1:21835923-21835942 | Msa0201060:intron | 30.0% | |
AAAAATCTGATAATCCACTC+TGG | + | chr2_1:21836054-21836073 | Msa0201060:CDS | 30.0% | |
AAAATCTGATAATCCACTCT+GGG | + | chr2_1:21836055-21836074 | Msa0201060:CDS | 30.0% | |
CCATCATTATTAAGTGGAAT+AGG | - | chr2_1:21836092-21836111 | None:intergenic | 30.0% | |
CCTATTCCACTTAATAATGA+TGG | + | chr2_1:21836089-21836108 | Msa0201060:CDS | 30.0% | |
! | GATTTTCCACTTCAAATTTG+CGG | - | chr2_1:21836354-21836373 | None:intergenic | 30.0% |
CCAACAAAATTATGCATTTG+CGG | + | chr2_1:21836741-21836760 | Msa0201060:intron | 30.0% | |
ATTTGCGGATTTCCTATAAT+AGG | + | chr2_1:21836756-21836775 | Msa0201060:intron | 30.0% | |
TTTGCGGATTTCCTATAATA+GGG | + | chr2_1:21836757-21836776 | Msa0201060:intron | 30.0% | |
TTGCATGAATTAGAAAGTCA+TGG | - | chr2_1:21836808-21836827 | None:intergenic | 30.0% | |
GCTTGTTCTTATAGAATGAT+TGG | - | chr2_1:21836984-21837003 | None:intergenic | 30.0% | |
TTAGTCCCTAAAAGCAAATT+TGG | + | chr2_1:21837023-21837042 | Msa0201060:intron | 30.0% | |
!! | TCCAACCAAATTTGCTTTTA+GGG | - | chr2_1:21837031-21837050 | None:intergenic | 30.0% |
!! | ATCCAACCAAATTTGCTTTT+AGG | - | chr2_1:21837032-21837051 | None:intergenic | 30.0% |
ATTGCATGTTAAGCTTAGAA+GGG | - | chr2_1:21837100-21837119 | None:intergenic | 30.0% | |
GAGAAGAAACACAGTAATAA+AGG | - | chr2_1:21837249-21837268 | None:intergenic | 30.0% | |
!! | TTTCTTCTCCTTTTGAAAGT+TGG | + | chr2_1:21837260-21837279 | Msa0201060:intron | 30.0% |
TGATTTATTTACTACGATGG+TGG | + | chr2_1:21837308-21837327 | Msa0201060:intron | 30.0% | |
CAAAATCTTCTTCACTCTAA+AGG | - | chr2_1:21837443-21837462 | None:intergenic | 30.0% | |
!!! | TTCGGTTTTCTAGTTTCTAT+CGG | - | chr2_1:21837473-21837492 | None:intergenic | 30.0% |
ACTAATGCACAATTTCACTT+CGG | - | chr2_1:21837491-21837510 | None:intergenic | 30.0% | |
! | TCTTTACAATGGTGGAAATA+TGG | + | chr2_1:21837538-21837557 | Msa0201060:intron | 30.0% |
! | TTCTTTTATAAAGAGAGGGA+AGG | - | chr2_1:21837655-21837674 | None:intergenic | 30.0% |
TTATTCAAATTAGCGGCAAT+GGG | - | chr2_1:21837975-21837994 | None:intergenic | 30.0% | |
ATTATTCAAATTAGCGGCAA+TGG | - | chr2_1:21837976-21837995 | None:intergenic | 30.0% | |
!! | TGATTAGTCTAAATAGGCAA+AGG | - | chr2_1:21838057-21838076 | None:intergenic | 30.0% |
TCTGTTATAATCTTTCTGAC+AGG | + | chr2_1:21838078-21838097 | Msa0201060:intron | 30.0% | |
ATATGGTGAATCATGGTACT+GGG | + | chr2_1:21834156-21834175 | Msa0201060:CDS | 35.0% | |
! | GGAACATAGAGATTGATGAT+AGG | - | chr2_1:21834244-21834263 | None:intergenic | 35.0% |
! | ACAAGGATAGATTGGTTCTT+GGG | - | chr2_1:21834265-21834284 | None:intergenic | 35.0% |
! | AACAAGGATAGATTGGTTCT+TGG | - | chr2_1:21834266-21834285 | None:intergenic | 35.0% |
! | AACCAATCTATCCTTGTTGT+TGG | + | chr2_1:21834268-21834287 | Msa0201060:CDS | 35.0% |
AACCAACAACAAGGATAGAT+TGG | - | chr2_1:21834273-21834292 | None:intergenic | 35.0% | |
AATTACCAGAACCAACAACA+AGG | - | chr2_1:21834282-21834301 | None:intergenic | 35.0% | |
! | ACCTTTTGTGTTATGCATGT+GGG | + | chr2_1:21834444-21834463 | Msa0201060:intron | 35.0% |
ATGTGGGCATGTAAATTTCA+AGG | + | chr2_1:21834460-21834479 | Msa0201060:intron | 35.0% | |
TAGAGAATTGTGGTCAAATG+CGG | + | chr2_1:21834720-21834739 | Msa0201060:intron | 35.0% | |
!! | GTTTAGTTTGATGGTGAGTT+TGG | - | chr2_1:21834887-21834906 | None:intergenic | 35.0% |
AGGAACTCTTGATTCTATCT+TGG | + | chr2_1:21835297-21835316 | Msa0201060:intron | 35.0% | |
! | AAGACTAACAGTTTGCTCAT+TGG | + | chr2_1:21835358-21835377 | Msa0201060:intron | 35.0% |
CTAAGATGCTTGAGGAAATT+TGG | + | chr2_1:21835427-21835446 | Msa0201060:CDS | 35.0% | |
ACAGAAGTGGTAAAGAACTA+TGG | - | chr2_1:21835481-21835500 | None:intergenic | 35.0% | |
GTCATCAACTGCTTCAATAA+TGG | - | chr2_1:21835539-21835558 | None:intergenic | 35.0% | |
GAACAGTTCATGTGTTAACT+TGG | - | chr2_1:21835825-21835844 | None:intergenic | 35.0% | |
! | GAAGAGGCGCAAATTTATAA+AGG | - | chr2_1:21835924-21835943 | None:intergenic | 35.0% |
TTGCCTAGTTCATTCATATC+TGG | + | chr2_1:21835966-21835985 | Msa0201060:intron | 35.0% | |
ACTCCAGATATGAATGAACT+AGG | - | chr2_1:21835972-21835991 | None:intergenic | 35.0% | |
AAGTTTCTCTGCACATATCA+CGG | - | chr2_1:21836024-21836043 | None:intergenic | 35.0% | |
GAGCTTCCATCATTATTAAG+TGG | - | chr2_1:21836098-21836117 | None:intergenic | 35.0% | |
! | TAATAATGATGGAAGCTCTG+TGG | + | chr2_1:21836100-21836119 | Msa0201060:CDS | 35.0% |
ATGTTCTTGGTCAATAGTGT+TGG | + | chr2_1:21836208-21836227 | Msa0201060:intron | 35.0% | |
TTGTTAAAGTTGCCTTCGTT+TGG | - | chr2_1:21836292-21836311 | None:intergenic | 35.0% | |
!!! | TTTTTTGAAGATAGCCAGTG+AGG | + | chr2_1:21836408-21836427 | Msa0201060:intron | 35.0% |
ATTGCTCTGATATCAAGGTT+TGG | - | chr2_1:21836501-21836520 | None:intergenic | 35.0% | |
GATTCAGTGAAATTGCCTTA+GGG | - | chr2_1:21836549-21836568 | None:intergenic | 35.0% | |
TGATTCAGTGAAATTGCCTT+AGG | - | chr2_1:21836550-21836569 | None:intergenic | 35.0% | |
AAGATAAGCATAACGAAGAG+TGG | - | chr2_1:21836602-21836621 | None:intergenic | 35.0% | |
TGAAGGAGAGTCAAAACATT+TGG | - | chr2_1:21836637-21836656 | None:intergenic | 35.0% | |
!! | TTTGACTCGATGCATTTTGA+AGG | - | chr2_1:21836654-21836673 | None:intergenic | 35.0% |
! | CCGCAAATGCATAATTTTGT+TGG | - | chr2_1:21836744-21836763 | None:intergenic | 35.0% |
TGAGATGTGTTCCCTATTAT+AGG | - | chr2_1:21836771-21836790 | None:intergenic | 35.0% | |
GTGGAAGGAATCAACTAATA+AGG | - | chr2_1:21836859-21836878 | None:intergenic | 35.0% | |
AATGATTGGAAACTCACGAA+TGG | - | chr2_1:21836970-21836989 | None:intergenic | 35.0% | |
TCCCTAAAAGCAAATTTGGT+TGG | + | chr2_1:21837027-21837046 | Msa0201060:intron | 35.0% | |
CATTGCATGTTAAGCTTAGA+AGG | - | chr2_1:21837101-21837120 | None:intergenic | 35.0% | |
CTAAGCTTAACATGCAATGA+AGG | + | chr2_1:21837102-21837121 | Msa0201060:intron | 35.0% | |
! | AAGTACTGCCAACTTTCAAA+AGG | - | chr2_1:21837271-21837290 | None:intergenic | 35.0% |
! | TTCTTCACTCTAAAGGGTAT+TGG | - | chr2_1:21837436-21837455 | None:intergenic | 35.0% |
TGCATTAGTGACTCTGATAA+TGG | + | chr2_1:21837502-21837521 | Msa0201060:intron | 35.0% | |
AAGAAATTCTCCTAGACTTC+AGG | + | chr2_1:21837670-21837689 | Msa0201060:intron | 35.0% | |
AGAAATTCTCCTAGACTTCA+GGG | + | chr2_1:21837671-21837690 | Msa0201060:intron | 35.0% | |
CTGAAGGAATAAAGGTTGTT+AGG | - | chr2_1:21837702-21837721 | None:intergenic | 35.0% | |
TGAAGAAGCTGAAGGAATAA+AGG | - | chr2_1:21837710-21837729 | None:intergenic | 35.0% | |
AAGAAGATTGAAGAAGCTGA+AGG | - | chr2_1:21837718-21837737 | None:intergenic | 35.0% | |
GGGAACAAATGAAAACTGAA+TGG | - | chr2_1:21837955-21837974 | None:intergenic | 35.0% | |
CACAAGCATATGGTGAATCA+TGG | + | chr2_1:21834149-21834168 | Msa0201060:CDS | 40.0% | |
CATATGGTGAATCATGGTAC+TGG | + | chr2_1:21834155-21834174 | Msa0201060:CDS | 40.0% | |
!! | TCTATCCTTGTTGTTGGTTC+TGG | + | chr2_1:21834274-21834293 | Msa0201060:CDS | 40.0% |
!! | GTTGTTGGTTCTGGTAATTC+AGG | + | chr2_1:21834283-21834302 | Msa0201060:CDS | 40.0% |
! | CACCTTTTGTGTTATGCATG+TGG | + | chr2_1:21834443-21834462 | Msa0201060:intron | 40.0% |
ACTTCAATTGAGGACGATCT+CGG | - | chr2_1:21834613-21834632 | None:intergenic | 40.0% | |
! | GGATTCACAATGATTTTGCC+AGG | + | chr2_1:21834781-21834800 | Msa0201060:intron | 40.0% |
! | TGATGATAGCGATGTTCTTG+AGG | + | chr2_1:21835073-21835092 | Msa0201060:intron | 40.0% |
! | GCTTTTGCATCAGAGACTTT+TGG | + | chr2_1:21835151-21835170 | Msa0201060:CDS | 40.0% |
ACATGCTACTAAGATGCTTG+AGG | + | chr2_1:21835419-21835438 | Msa0201060:CDS | 40.0% | |
AGATGCTTGAGGAAATTTGG+AGG | + | chr2_1:21835430-21835449 | Msa0201060:CDS | 40.0% | |
!! | AGCAGTTGATGACACACTAT+AGG | + | chr2_1:21835546-21835565 | Msa0201060:intron | 40.0% |
!! | GCAGTTGATGACACACTATA+GGG | + | chr2_1:21835547-21835566 | Msa0201060:intron | 40.0% |
TATAGGGTTCTCAAGGCTAA+AGG | + | chr2_1:21835563-21835582 | Msa0201060:intron | 40.0% | |
GGCTAAAGGAGTCTATATTC+TGG | + | chr2_1:21835577-21835596 | Msa0201060:CDS | 40.0% | |
GAATACAACTCGGTACTAAG+AGG | - | chr2_1:21835611-21835630 | None:intergenic | 40.0% | |
! | TTTTTGCACGCATTCAAGAC+CGG | - | chr2_1:21835680-21835699 | None:intergenic | 40.0% |
TGAATGCGTGCAAAAATTGC+AGG | + | chr2_1:21835684-21835703 | Msa0201060:intron | 40.0% | |
CAAAAATTGCAGGTGACGTA+TGG | + | chr2_1:21835694-21835713 | Msa0201060:intron | 40.0% | |
AGCAAACGTAAGCGATATAG+TGG | - | chr2_1:21835724-21835743 | None:intergenic | 40.0% | |
GCCTCTTCGGTCAAATATAT+AGG | + | chr2_1:21835936-21835955 | Msa0201060:intron | 40.0% | |
GCCTATATATTTGACCGAAG+AGG | - | chr2_1:21835940-21835959 | None:intergenic | 40.0% | |
AGATTGCCGCAAATTTGAAG+TGG | + | chr2_1:21836345-21836364 | Msa0201060:intron | 40.0% | |
TCAAGTAAGTCCTCCTAAGT+AGG | - | chr2_1:21836449-21836468 | None:intergenic | 40.0% | |
GCACAATTGCTCTGATATCA+AGG | - | chr2_1:21836506-21836525 | None:intergenic | 40.0% | |
GTCTCAAAATTCTCTCCCTA+AGG | + | chr2_1:21836531-21836550 | Msa0201060:intron | 40.0% | |
TAAGCATAACGAAGAGTGGA+CGG | - | chr2_1:21836598-21836617 | None:intergenic | 40.0% | |
GAGCTTGAAGCTCTTTACAA+TGG | + | chr2_1:21837527-21837546 | Msa0201060:intron | 40.0% | |
CTTGAAGCTCTTTACAATGG+TGG | + | chr2_1:21837530-21837549 | Msa0201060:intron | 40.0% | |
TAGGATATACCCTGAAGTCT+AGG | - | chr2_1:21837683-21837702 | None:intergenic | 40.0% | |
GAAACTGCACTAGTGTGAAT+TGG | + | chr2_1:21837738-21837757 | Msa0201060:intron | 40.0% | |
! | AGGAAACTGATAGAGCATCA+GGG | - | chr2_1:21837795-21837814 | None:intergenic | 40.0% |
!!! | GAGTGTTTTAACGAGATGAG+AGG | - | chr2_1:21837815-21837834 | None:intergenic | 40.0% |
GCTCTAGTAGCTTGAGATTT+GGG | - | chr2_1:21838441-21838460 | None:intergenic | 40.0% | |
GAACAAACAGTGATGGCAAC+AGG | + | chr2_1:21834124-21834143 | Msa0201060:exon | 45.0% | |
GCAACAGGTACACAAGCATA+TGG | + | chr2_1:21834139-21834158 | Msa0201060:CDS | 45.0% | |
AACCGTTACACAAACGAACC+AGG | + | chr2_1:21834181-21834200 | Msa0201060:CDS | 45.0% | |
! | GACCTGGTTCGTTTGTGTAA+CGG | - | chr2_1:21834186-21834205 | None:intergenic | 45.0% |
! | ACGAACCAGGTCCTTTTGAT+TGG | + | chr2_1:21834194-21834213 | Msa0201060:CDS | 45.0% |
TGGTACCAATCAAAAGGACC+TGG | - | chr2_1:21834202-21834221 | None:intergenic | 45.0% | |
GCCCACATGCATAACACAAA+AGG | - | chr2_1:21834448-21834467 | None:intergenic | 45.0% | |
TTGTTTGCAGCGTTCAGTCA+AGG | + | chr2_1:21834506-21834525 | Msa0201060:intron | 45.0% | |
!! | AGTCAAGGCATGGTTGATGA+AGG | + | chr2_1:21834521-21834540 | Msa0201060:CDS | 45.0% |
!! | GGTTGATGAAGGTGGTTACA+AGG | + | chr2_1:21834532-21834551 | Msa0201060:CDS | 45.0% |
TAGAGATACTACTGCGATCC+TGG | - | chr2_1:21834802-21834821 | None:intergenic | 45.0% | |
GACACACTATAGGGTTCTCA+AGG | + | chr2_1:21835556-21835575 | Msa0201060:intron | 45.0% | |
GTCTTAGCATTTCGCCTAAC+CGG | + | chr2_1:21835658-21835677 | Msa0201060:intron | 45.0% | |
TCACTCCTACAGTCCTACTT+AGG | + | chr2_1:21836433-21836452 | Msa0201060:intron | 45.0% | |
GTCTCATTTGAGTCGTGACA+GGG | - | chr2_1:21836479-21836498 | None:intergenic | 45.0% | |
TGAAGAATCACTCGCCTGTT+AGG | - | chr2_1:21836689-21836708 | None:intergenic | 45.0% | |
TTAAGACGACGTTCGTGTAG+TGG | - | chr2_1:21836878-21836897 | None:intergenic | 45.0% | |
CTTATGAGAGGATCTCTCTC+TGG | - | chr2_1:21837589-21837608 | None:intergenic | 45.0% | |
!! | CGTGTCACTTCACTTATGAG+AGG | - | chr2_1:21837601-21837620 | None:intergenic | 45.0% |
TGTGAATTGGACCCGATGAT+GGG | + | chr2_1:21837751-21837770 | Msa0201060:intron | 45.0% | |
TCAGGGTCCAGTAAATGTGA+GGG | - | chr2_1:21837778-21837797 | None:intergenic | 45.0% | |
ATCAGGGTCCAGTAAATGTG+AGG | - | chr2_1:21837779-21837798 | None:intergenic | 45.0% | |
! | GAGGAAACTGATAGAGCATC+AGG | - | chr2_1:21837796-21837815 | None:intergenic | 45.0% |
! | GGCTCTAGTAGCTTGAGATT+TGG | - | chr2_1:21838442-21838461 | None:intergenic | 45.0% |
!!! | AATTTTATAAAATTATAACA+TGG | - | chr2_1:21835037-21835056 | None:intergenic | 5.0% |
!! | CAAGGCATGGTTGATGAAGG+TGG | + | chr2_1:21834524-21834543 | Msa0201060:CDS | 50.0% |
TGAGTTTGGCAAGATCGCAC+TGG | - | chr2_1:21834873-21834892 | None:intergenic | 50.0% | |
TGCTACGTGATTCATGCTCG+TGG | + | chr2_1:21835740-21835759 | Msa0201060:CDS | 50.0% | |
CTCTGCACATATCACGGAAG+TGG | - | chr2_1:21836018-21836037 | None:intergenic | 50.0% | |
AGCTCTGTGGATGAAACCCT+AGG | + | chr2_1:21836113-21836132 | Msa0201060:CDS | 50.0% | |
GACATCGGGATTCAGTCCTA+GGG | - | chr2_1:21836132-21836151 | None:intergenic | 50.0% | |
CTCCTACAGTCCTACTTAGG+AGG | + | chr2_1:21836436-21836455 | Msa0201060:intron | 50.0% | |
GTCCTCCTAAGTAGGACTGT+AGG | - | chr2_1:21836441-21836460 | None:intergenic | 50.0% | |
GGTCTCATTTGAGTCGTGAC+AGG | - | chr2_1:21836480-21836499 | None:intergenic | 50.0% | |
TCTCGAGAGAGAAGCAAGAC+AGG | - | chr2_1:21837405-21837424 | None:intergenic | 50.0% | |
AGAGGATCTCTCTCTGGTCT+TGG | - | chr2_1:21837583-21837602 | None:intergenic | 50.0% | |
GTGTGAATTGGACCCGATGA+TGG | + | chr2_1:21837750-21837769 | Msa0201060:intron | 50.0% | |
AAATGTGAGGGGCCCATCAT+CGG | - | chr2_1:21837766-21837785 | None:intergenic | 50.0% | |
CAGGGTCCAGTAAATGTGAG+GGG | - | chr2_1:21837777-21837796 | None:intergenic | 50.0% | |
CATGAATGCGCAGTTTAGCG+TGG | + | chr2_1:21838128-21838147 | Msa0201060:exon | 50.0% | |
AATGCGCAGTTTAGCGTGGA+AGG | + | chr2_1:21838132-21838151 | Msa0201060:exon | 50.0% | |
TGCAGCGTTCAGTCAAGGCA+TGG | + | chr2_1:21834511-21834530 | Msa0201060:intron | 55.0% | |
GCACGCATTCAAGACCGGTT+AGG | - | chr2_1:21835675-21835694 | None:intergenic | 55.0% | |
!! | GGTTTTGTCAGCTCCCAGAG+TGG | - | chr2_1:21836071-21836090 | None:intergenic | 55.0% |
GGACATCGGGATTCAGTCCT+AGG | - | chr2_1:21836133-21836152 | None:intergenic | 55.0% | |
CTGTAGGAGTGACACCTCAC+TGG | - | chr2_1:21836425-21836444 | None:intergenic | 55.0% | |
! | GACGACGTTCGTGTAGTGGA+AGG | - | chr2_1:21836874-21836893 | None:intergenic | 55.0% |
AATGTGAGGGGCCCATCATC+GGG | - | chr2_1:21837765-21837784 | None:intergenic | 55.0% | |
GATGGGCCCCTCACATTTAC+TGG | + | chr2_1:21837768-21837787 | Msa0201060:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 21834049 | 21838517 | 21834049 | ID=Msa0201060;Name=Msa0201060 |
chr2_1 | mRNA | 21834049 | 21838517 | 21834049 | ID=Msa0201060-mRNA-1;Parent=Msa0201060;Name=Msa0201060-mRNA-1;_AED=0.16;_eAED=0.16;_QI=87|1|1|1|1|1|9|385|236 |
chr2_1 | exon | 21834049 | 21834304 | 21834049 | ID=Msa0201060-mRNA-1:exon:8769;Parent=Msa0201060-mRNA-1 |
chr2_1 | exon | 21834516 | 21834632 | 21834516 | ID=Msa0201060-mRNA-1:exon:8770;Parent=Msa0201060-mRNA-1 |
chr2_1 | exon | 21835122 | 21835190 | 21835122 | ID=Msa0201060-mRNA-1:exon:8771;Parent=Msa0201060-mRNA-1 |
chr2_1 | exon | 21835299 | 21835318 | 21835299 | ID=Msa0201060-mRNA-1:exon:8772;Parent=Msa0201060-mRNA-1 |
chr2_1 | exon | 21835399 | 21835451 | 21835399 | ID=Msa0201060-mRNA-1:exon:8773;Parent=Msa0201060-mRNA-1 |
chr2_1 | exon | 21835568 | 21835598 | 21835568 | ID=Msa0201060-mRNA-1:exon:8774;Parent=Msa0201060-mRNA-1 |
chr2_1 | exon | 21835706 | 21835784 | 21835706 | ID=Msa0201060-mRNA-1:exon:8775;Parent=Msa0201060-mRNA-1 |
chr2_1 | exon | 21836036 | 21836175 | 21836036 | ID=Msa0201060-mRNA-1:exon:8776;Parent=Msa0201060-mRNA-1 |
chr2_1 | exon | 21838100 | 21838517 | 21838100 | ID=Msa0201060-mRNA-1:exon:8777;Parent=Msa0201060-mRNA-1 |
chr2_1 | five_prime_UTR | 21834049 | 21834135 | 21834049 | ID=Msa0201060-mRNA-1:five_prime_utr;Parent=Msa0201060-mRNA-1 |
chr2_1 | CDS | 21834136 | 21834304 | 21834136 | ID=Msa0201060-mRNA-1:cds;Parent=Msa0201060-mRNA-1 |
chr2_1 | CDS | 21834516 | 21834632 | 21834516 | ID=Msa0201060-mRNA-1:cds;Parent=Msa0201060-mRNA-1 |
chr2_1 | CDS | 21835122 | 21835190 | 21835122 | ID=Msa0201060-mRNA-1:cds;Parent=Msa0201060-mRNA-1 |
chr2_1 | CDS | 21835299 | 21835318 | 21835299 | ID=Msa0201060-mRNA-1:cds;Parent=Msa0201060-mRNA-1 |
chr2_1 | CDS | 21835399 | 21835451 | 21835399 | ID=Msa0201060-mRNA-1:cds;Parent=Msa0201060-mRNA-1 |
chr2_1 | CDS | 21835568 | 21835598 | 21835568 | ID=Msa0201060-mRNA-1:cds;Parent=Msa0201060-mRNA-1 |
chr2_1 | CDS | 21835706 | 21835784 | 21835706 | ID=Msa0201060-mRNA-1:cds;Parent=Msa0201060-mRNA-1 |
chr2_1 | CDS | 21836036 | 21836175 | 21836036 | ID=Msa0201060-mRNA-1:cds;Parent=Msa0201060-mRNA-1 |
chr2_1 | CDS | 21838100 | 21838132 | 21838100 | ID=Msa0201060-mRNA-1:cds;Parent=Msa0201060-mRNA-1 |
chr2_1 | three_prime_UTR | 21838133 | 21838517 | 21838133 | ID=Msa0201060-mRNA-1:three_prime_utr;Parent=Msa0201060-mRNA-1 |
Gene Sequence |
Protein sequence |