AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0201060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0201060 MtrunA17_Chr2g0297031 93.254 252 1 1 1 236 1 252 2.30e-173 476
Msa0201060 MtrunA17_Chr4g0020211 44.681 235 126 3 2 233 7 240 4.07e-64 200
Msa0201060 MtrunA17_Chr8g0378231 35.526 152 88 5 14 157 25 174 1.05e-20 90.5
Msa0201060 MtrunA17_Chr4g0034381 27.174 184 120 6 3 175 15 195 2.31e-19 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0201060 AT3G17365.1 69.038 239 70 3 1 236 1 238 1.21e-122 348
Msa0201060 AT3G17365.2 55.235 277 82 6 1 236 1 276 9.55e-101 294
Msa0201060 AT3G60910.1 41.921 229 129 3 2 227 7 234 4.01e-63 197
Msa0201060 AT3G60910.2 42.197 173 96 3 58 227 1 172 7.08e-44 146
Msa0201060 AT4G34360.1 29.444 180 113 7 7 175 14 190 5.10e-20 85.9
Msa0201060 AT2G31740.1 31.551 187 113 7 14 188 29 212 2.97e-17 80.9

Find 64 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAGATGCTTGAGGAAATT+TGG 0.165677 2_1:+21835427 Msa0201060:CDS
TCCAAAGTTAATGATGTTAT+TGG 0.194035 2_1:+21838231 Msa0201060:three_prime_UTR
TATTTGTATTCAACAGTAAT+TGG 0.230490 2_1:-21838460 None:intergenic
TCTATCCTTGTTGTTGGTTC+TGG 0.233828 2_1:+21834274 Msa0201060:CDS
GTTGTTGGTTCTGGTAATTC+AGG 0.253017 2_1:+21834283 Msa0201060:CDS
TCCAATTAACATAAAACTTA+TGG 0.260374 2_1:-21838341 None:intergenic
GGCTCTAGTAGCTTGAGATT+TGG 0.277066 2_1:-21838439 None:intergenic
TCGATCTTCAATATGTTGTT+TGG 0.308056 2_1:-21834095 None:intergenic
GCTCTAGTAGCTTGAGATTT+GGG 0.308363 2_1:-21838438 None:intergenic
TAGTTAGACAGATTTGAAAA+TGG 0.318761 2_1:+21835111 Msa0201060:intron
CCATCATTATTAAGTGGAAT+AGG 0.346132 2_1:-21836089 None:intergenic
ACAATTAAACTCCATGTAAT+AGG 0.352596 2_1:+21835763 Msa0201060:CDS
GAGCCAAAGTAATATACTTT+TGG 0.356009 2_1:-21834219 None:intergenic
ACCAATAACATCATTAACTT+TGG 0.362275 2_1:-21838232 None:intergenic
TAACACAAATTTGTGTAGAT+TGG 0.363308 2_1:-21838164 None:intergenic
TAGTGCAAATGTATATATAA+TGG 0.365312 2_1:-21836151 None:intergenic
AGGAACTCTTGATTCTATCT+TGG 0.371492 2_1:+21835297 Msa0201060:intron
AACAAGGATAGATTGGTTCT+TGG 0.386383 2_1:-21834263 None:intergenic
AACCAATCTATCCTTGTTGT+TGG 0.393670 2_1:+21834268 Msa0201060:CDS
GGACATCGGGATTCAGTCCT+AGG 0.416500 2_1:-21836130 None:intergenic
ACAAGGATAGATTGGTTCTT+GGG 0.427283 2_1:-21834262 None:intergenic
GTACCAAAAGTATATTACTT+TGG 0.445138 2_1:+21834216 Msa0201060:CDS
GGCTAAAGGAGTCTATATTC+TGG 0.446501 2_1:+21835577 Msa0201060:CDS
CCTATTCCACTTAATAATGA+TGG 0.448893 2_1:+21836089 Msa0201060:CDS
AACCAACAACAAGGATAGAT+TGG 0.452329 2_1:-21834270 None:intergenic
GAGCTTCCATCATTATTAAG+TGG 0.453928 2_1:-21836095 None:intergenic
CATATGGTGAATCATGGTAC+TGG 0.459818 2_1:+21834155 Msa0201060:CDS
GAACAAACAGTGATGGCAAC+AGG 0.463928 2_1:+21834124 Msa0201060:exon
GGAACATAGAGATTGATGAT+AGG 0.472893 2_1:-21834241 None:intergenic
AATCACAACTGTATTACAAA+TGG 0.483068 2_1:-21838364 None:intergenic
AGCAAACGTAAGCGATATAG+TGG 0.489409 2_1:-21835721 None:intergenic
ATGTATATATAATGGACATC+GGG 0.504347 2_1:-21836143 None:intergenic
ATTTAAACCAACCTATTACA+TGG 0.504757 2_1:-21835774 None:intergenic
TTATATATACATTTGCACTA+AGG 0.515855 2_1:+21836154 Msa0201060:CDS
TATAGGGTTCTCAAGGCTAA+AGG 0.523386 2_1:+21835563 Msa0201060:intron
GCAACAGGTACACAAGCATA+TGG 0.530042 2_1:+21834139 Msa0201060:CDS
GACCTGGTTCGTTTGTGTAA+CGG 0.530093 2_1:-21834183 None:intergenic
TTTGGTTCTGTTATTGACAA+AGG 0.530391 2_1:+21835169 Msa0201060:CDS
CACAAGCATATGGTGAATCA+TGG 0.535442 2_1:+21834149 Msa0201060:CDS
TGCAGCGTTCAGTCAAGGCA+TGG 0.540936 2_1:+21834511 Msa0201060:intron
TTGTTTGCAGCGTTCAGTCA+AGG 0.543732 2_1:+21834506 Msa0201060:intron
GAACATTGATATTTCTTCAG+TGG 0.546761 2_1:+21834562 Msa0201060:CDS
AAAATCTGATAATCCACTCT+GGG 0.552145 2_1:+21836055 Msa0201060:CDS
AGTCAAGGCATGGTTGATGA+AGG 0.554093 2_1:+21834521 Msa0201060:CDS
AATGCGCAGTTTAGCGTGGA+AGG 0.561445 2_1:+21838132 Msa0201060:exon
TGGTACCAATCAAAAGGACC+TGG 0.568031 2_1:-21834199 None:intergenic
AACCGTTACACAAACGAACC+AGG 0.571683 2_1:+21834181 Msa0201060:CDS
ATAAGGATACACTTCAATTG+AGG 0.578933 2_1:-21834620 None:intergenic
AGATGCTTGAGGAAATTTGG+AGG 0.579739 2_1:+21835430 Msa0201060:CDS
GGTTGATGAAGGTGGTTACA+AGG 0.580058 2_1:+21834532 Msa0201060:CDS
GACACACTATAGGGTTCTCA+AGG 0.580644 2_1:+21835556 Msa0201060:intron
AATGTATATATAATGGACAT+CGG 0.584034 2_1:-21836144 None:intergenic
AAAGAAAGAACAAACAGTGA+TGG 0.585787 2_1:+21834117 Msa0201060:exon
ACTTCAATTGAGGACGATCT+CGG 0.589584 2_1:-21834610 None:intergenic
TGCTACGTGATTCATGCTCG+TGG 0.598791 2_1:+21835740 Msa0201060:CDS
GACATCGGGATTCAGTCCTA+GGG 0.605591 2_1:-21836129 None:intergenic
TTTCAATATTTAAAACACAA+GGG 0.606296 2_1:-21838390 None:intergenic
CAAGGCATGGTTGATGAAGG+TGG 0.620512 2_1:+21834524 Msa0201060:CDS
ATATGGTGAATCATGGTACT+GGG 0.622071 2_1:+21834156 Msa0201060:CDS
CATGAATGCGCAGTTTAGCG+TGG 0.625848 2_1:+21838128 Msa0201060:exon
ACATGCTACTAAGATGCTTG+AGG 0.629503 2_1:+21835419 Msa0201060:CDS
AGCTCTGTGGATGAAACCCT+AGG 0.652280 2_1:+21836113 Msa0201060:CDS
TAATAATGATGGAAGCTCTG+TGG 0.664960 2_1:+21836100 Msa0201060:CDS
AATTACCAGAACCAACAACA+AGG 0.677098 2_1:-21834279 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAATGTTTTGTTTTT+TGG - chr2_1:21834318-21834337 None:intergenic 10.0%
!! ATGTATAAAAATATTTATTG+CGG + chr2_1:21834907-21834926 Msa0201060:intron 10.0%
!! AAAACAATATATTTATACAA+AGG - chr2_1:21834945-21834964 None:intergenic 10.0%
!!! AAATGTTTTTTTTAGAAAAA+TGG - chr2_1:21835874-21835893 None:intergenic 10.0%
!! TATCAACAATATTAATAAAA+TGG + chr2_1:21837154-21837173 Msa0201060:intron 10.0%
!! ATCAACAATATTAATAAAAT+GGG + chr2_1:21837155-21837174 Msa0201060:intron 10.0%
!! AACTTCATAATTTAAAAACA+TGG - chr2_1:21834668-21834687 None:intergenic 15.0%
!!! ATGTTTTTAAATTATGAAGT+TGG + chr2_1:21834667-21834686 Msa0201060:intron 15.0%
!! ATTATATTTATAGAGAATTG+TGG + chr2_1:21834710-21834729 Msa0201060:intron 15.0%
!!! ATTGTTTAATTTTGTTTTTC+AGG + chr2_1:21835277-21835296 Msa0201060:intron 15.0%
!!! TTTTATTATTCTACATTGAA+GGG - chr2_1:21836376-21836395 None:intergenic 15.0%
!!! TTTTTATTATTCTACATTGA+AGG - chr2_1:21836377-21836396 None:intergenic 15.0%
!!! TTTCAATATTTAAAACACAA+GGG - chr2_1:21838393-21838412 None:intergenic 15.0%
!!! TTTTCAATATTTAAAACACA+AGG - chr2_1:21838394-21838413 None:intergenic 15.0%
!!! TGTGTTTTAAATATTGAAAA+TGG + chr2_1:21838394-21838413 Msa0201060:three_prime_UTR 15.0%
!! CAAATGAAAAAGAATAAATG+GGG - chr2_1:21834380-21834399 None:intergenic 20.0%
!! CCAAATGAAAAAGAATAAAT+GGG - chr2_1:21834381-21834400 None:intergenic 20.0%
!!! CCATTTATTCTTTTTCATTT+GGG + chr2_1:21834379-21834398 Msa0201060:intron 20.0%
!! AACATGAATTAATCAACATA+AGG - chr2_1:21834640-21834659 None:intergenic 20.0%
!!! TTTATACATGTTTAGTTTGA+TGG - chr2_1:21834896-21834915 None:intergenic 20.0%
!! ATTATAACATGGATATAACA+TGG - chr2_1:21835026-21835045 None:intergenic 20.0%
!!! TTTATAAAATTTTGCTGAAG+TGG + chr2_1:21835046-21835065 Msa0201060:intron 20.0%
!! AAATGAATCTATGAATGAAT+GGG - chr2_1:21835202-21835221 None:intergenic 20.0%
!! TAAATGAATCTATGAATGAA+TGG - chr2_1:21835203-21835222 None:intergenic 20.0%
!! TTATAAAGGAACACATAAAT+AGG - chr2_1:21835910-21835929 None:intergenic 20.0%
!!! AATGTATATATAATGGACAT+CGG - chr2_1:21836147-21836166 None:intergenic 20.0%
!! TAGTGCAAATGTATATATAA+TGG - chr2_1:21836154-21836173 None:intergenic 20.0%
!! TTATATATACATTTGCACTA+AGG + chr2_1:21836154-21836173 Msa0201060:CDS 20.0%
!!! AAAAAATTTAGTTTCCTAAC+AGG + chr2_1:21836672-21836691 Msa0201060:intron 20.0%
!!! AATTTTGTTGGCTATTTTAT+AGG - chr2_1:21836732-21836751 None:intergenic 20.0%
!! AATATTAATAAAATGGGAGA+AGG + chr2_1:21837161-21837180 Msa0201060:intron 20.0%
!!! TTTTAGATTTACTTTTGACT+TGG + chr2_1:21837357-21837376 Msa0201060:intron 20.0%
!!! GAATTTCTTTTATAAAGAGA+GGG - chr2_1:21837659-21837678 None:intergenic 20.0%
!!! AGAATTTCTTTTATAAAGAG+AGG - chr2_1:21837660-21837679 None:intergenic 20.0%
!! CGATTAATTATTCAAATTAG+CGG - chr2_1:21837982-21838001 None:intergenic 20.0%
!! ATTTGAATAATTAATCGTCA+TGG + chr2_1:21837985-21838004 Msa0201060:intron 20.0%
!!! TCCATAAGTTTTATGTTAAT+TGG + chr2_1:21838340-21838359 Msa0201060:three_prime_UTR 20.0%
!! TCCAATTAACATAAAACTTA+TGG - chr2_1:21838344-21838363 None:intergenic 20.0%
!! TATTTGTATTCAACAGTAAT+TGG - chr2_1:21838463-21838482 None:intergenic 20.0%
!! GTACCAAAAGTATATTACTT+TGG + chr2_1:21834216-21834235 Msa0201060:CDS 25.0%
!!! CCCATTTATTCTTTTTCATT+TGG + chr2_1:21834378-21834397 Msa0201060:intron 25.0%
! CCCAAATGAAAAAGAATAAA+TGG - chr2_1:21834382-21834401 None:intergenic 25.0%
! ATGGATATAACATGGTAAAT+TGG - chr2_1:21835018-21835037 None:intergenic 25.0%
! TCAAATCTGTCTAACTATTA+AGG - chr2_1:21835108-21835127 None:intergenic 25.0%
! TAGTTAGACAGATTTGAAAA+TGG + chr2_1:21835111-21835130 Msa0201060:intron 25.0%
!!! ATATTTTTGTTGTACTAGTG+TGG + chr2_1:21835381-21835400 Msa0201060:intron 25.0%
! GAATAAATCTGAATACAACT+CGG - chr2_1:21835621-21835640 None:intergenic 25.0%
! ACAATTAAACTCCATGTAAT+AGG + chr2_1:21835763-21835782 Msa0201060:CDS 25.0%
! ATTTAAACCAACCTATTACA+TGG - chr2_1:21835777-21835796 None:intergenic 25.0%
! CAAAAAATGACAATGATAAG+AGG - chr2_1:21835800-21835819 None:intergenic 25.0%
!!! ATGTATATATAATGGACATC+GGG - chr2_1:21836146-21836165 None:intergenic 25.0%
!! TACTTACTCTTTTATGTTCT+TGG + chr2_1:21836195-21836214 Msa0201060:intron 25.0%
! TTAGACAACTCTCAAAAAAA+AGG - chr2_1:21836257-21836276 None:intergenic 25.0%
!! TCATAAATTTTACCAAACGA+AGG + chr2_1:21836277-21836296 Msa0201060:intron 25.0%
! TTTAATCAGTGTCATGTAAA+TGG + chr2_1:21836909-21836928 Msa0201060:intron 25.0%
! GTAGAATATAATGTACATCT+AGG + chr2_1:21836931-21836950 Msa0201060:intron 25.0%
! TTCAACTAGATTATCAACAA+TGG - chr2_1:21837129-21837148 None:intergenic 25.0%
! AGAAGAAACACAGTAATAAA+GGG - chr2_1:21837248-21837267 None:intergenic 25.0%
! ATGTGATTTATTTACTACGA+TGG + chr2_1:21837305-21837324 Msa0201060:intron 25.0%
! AAAATCTTCTTCACTCTAAA+GGG - chr2_1:21837442-21837461 None:intergenic 25.0%
! TCATCTTGTTGAAAATACTT+AGG + chr2_1:21837843-21837862 Msa0201060:intron 25.0%
!!! ACAGAATGATTAGTCTAAAT+AGG - chr2_1:21838063-21838082 None:intergenic 25.0%
! TAACACAAATTTGTGTAGAT+TGG - chr2_1:21838167-21838186 None:intergenic 25.0%
! TCCAAAGTTAATGATGTTAT+TGG + chr2_1:21838231-21838250 Msa0201060:three_prime_UTR 25.0%
! ACCAATAACATCATTAACTT+TGG - chr2_1:21838235-21838254 None:intergenic 25.0%
! AATCACAACTGTATTACAAA+TGG - chr2_1:21838367-21838386 None:intergenic 25.0%
TCGATCTTCAATATGTTGTT+TGG - chr2_1:21834098-21834117 None:intergenic 30.0%
AAAGAAAGAACAAACAGTGA+TGG + chr2_1:21834117-21834136 Msa0201060:exon 30.0%
! TACTTTTGGTACCAATCAAA+AGG - chr2_1:21834208-21834227 None:intergenic 30.0%
! GAGCCAAAGTAATATACTTT+TGG - chr2_1:21834222-21834241 None:intergenic 30.0%
GAACATTGATATTTCTTCAG+TGG + chr2_1:21834562-21834581 Msa0201060:CDS 30.0%
ATAAGGATACACTTCAATTG+AGG - chr2_1:21834623-21834642 None:intergenic 30.0%
AAGACATCAAAGTGTATGTT+TGG + chr2_1:21834760-21834779 Msa0201060:intron 30.0%
! TAGTATCTCTAGTGTGATTT+TGG + chr2_1:21834811-21834830 Msa0201060:intron 30.0%
!! TTTGGTTCTGTTATTGACAA+AGG + chr2_1:21835169-21835188 Msa0201060:CDS 30.0%
! AACTATGGACTTTTTGTTCA+TGG - chr2_1:21835466-21835485 None:intergenic 30.0%
! TTACCACTTCTGTTTCATTT+TGG + chr2_1:21835488-21835507 Msa0201060:intron 30.0%
AATCCAAAATGAAACAGAAG+TGG - chr2_1:21835494-21835513 None:intergenic 30.0%
TTAAACTCCATGTAATAGGT+TGG + chr2_1:21835767-21835786 Msa0201060:intron 30.0%
CATAAATAGGATGCTTCAAA+GGG - chr2_1:21835897-21835916 None:intergenic 30.0%
ACATAAATAGGATGCTTCAA+AGG - chr2_1:21835898-21835917 None:intergenic 30.0%
TTTATAAATTTGCGCCTCTT+CGG + chr2_1:21835923-21835942 Msa0201060:intron 30.0%
AAAAATCTGATAATCCACTC+TGG + chr2_1:21836054-21836073 Msa0201060:CDS 30.0%
AAAATCTGATAATCCACTCT+GGG + chr2_1:21836055-21836074 Msa0201060:CDS 30.0%
CCATCATTATTAAGTGGAAT+AGG - chr2_1:21836092-21836111 None:intergenic 30.0%
CCTATTCCACTTAATAATGA+TGG + chr2_1:21836089-21836108 Msa0201060:CDS 30.0%
! GATTTTCCACTTCAAATTTG+CGG - chr2_1:21836354-21836373 None:intergenic 30.0%
CCAACAAAATTATGCATTTG+CGG + chr2_1:21836741-21836760 Msa0201060:intron 30.0%
ATTTGCGGATTTCCTATAAT+AGG + chr2_1:21836756-21836775 Msa0201060:intron 30.0%
TTTGCGGATTTCCTATAATA+GGG + chr2_1:21836757-21836776 Msa0201060:intron 30.0%
TTGCATGAATTAGAAAGTCA+TGG - chr2_1:21836808-21836827 None:intergenic 30.0%
GCTTGTTCTTATAGAATGAT+TGG - chr2_1:21836984-21837003 None:intergenic 30.0%
TTAGTCCCTAAAAGCAAATT+TGG + chr2_1:21837023-21837042 Msa0201060:intron 30.0%
!! TCCAACCAAATTTGCTTTTA+GGG - chr2_1:21837031-21837050 None:intergenic 30.0%
!! ATCCAACCAAATTTGCTTTT+AGG - chr2_1:21837032-21837051 None:intergenic 30.0%
ATTGCATGTTAAGCTTAGAA+GGG - chr2_1:21837100-21837119 None:intergenic 30.0%
GAGAAGAAACACAGTAATAA+AGG - chr2_1:21837249-21837268 None:intergenic 30.0%
!! TTTCTTCTCCTTTTGAAAGT+TGG + chr2_1:21837260-21837279 Msa0201060:intron 30.0%
TGATTTATTTACTACGATGG+TGG + chr2_1:21837308-21837327 Msa0201060:intron 30.0%
CAAAATCTTCTTCACTCTAA+AGG - chr2_1:21837443-21837462 None:intergenic 30.0%
!!! TTCGGTTTTCTAGTTTCTAT+CGG - chr2_1:21837473-21837492 None:intergenic 30.0%
ACTAATGCACAATTTCACTT+CGG - chr2_1:21837491-21837510 None:intergenic 30.0%
! TCTTTACAATGGTGGAAATA+TGG + chr2_1:21837538-21837557 Msa0201060:intron 30.0%
! TTCTTTTATAAAGAGAGGGA+AGG - chr2_1:21837655-21837674 None:intergenic 30.0%
TTATTCAAATTAGCGGCAAT+GGG - chr2_1:21837975-21837994 None:intergenic 30.0%
ATTATTCAAATTAGCGGCAA+TGG - chr2_1:21837976-21837995 None:intergenic 30.0%
!! TGATTAGTCTAAATAGGCAA+AGG - chr2_1:21838057-21838076 None:intergenic 30.0%
TCTGTTATAATCTTTCTGAC+AGG + chr2_1:21838078-21838097 Msa0201060:intron 30.0%
ATATGGTGAATCATGGTACT+GGG + chr2_1:21834156-21834175 Msa0201060:CDS 35.0%
! GGAACATAGAGATTGATGAT+AGG - chr2_1:21834244-21834263 None:intergenic 35.0%
! ACAAGGATAGATTGGTTCTT+GGG - chr2_1:21834265-21834284 None:intergenic 35.0%
! AACAAGGATAGATTGGTTCT+TGG - chr2_1:21834266-21834285 None:intergenic 35.0%
! AACCAATCTATCCTTGTTGT+TGG + chr2_1:21834268-21834287 Msa0201060:CDS 35.0%
AACCAACAACAAGGATAGAT+TGG - chr2_1:21834273-21834292 None:intergenic 35.0%
AATTACCAGAACCAACAACA+AGG - chr2_1:21834282-21834301 None:intergenic 35.0%
! ACCTTTTGTGTTATGCATGT+GGG + chr2_1:21834444-21834463 Msa0201060:intron 35.0%
ATGTGGGCATGTAAATTTCA+AGG + chr2_1:21834460-21834479 Msa0201060:intron 35.0%
TAGAGAATTGTGGTCAAATG+CGG + chr2_1:21834720-21834739 Msa0201060:intron 35.0%
!! GTTTAGTTTGATGGTGAGTT+TGG - chr2_1:21834887-21834906 None:intergenic 35.0%
AGGAACTCTTGATTCTATCT+TGG + chr2_1:21835297-21835316 Msa0201060:intron 35.0%
! AAGACTAACAGTTTGCTCAT+TGG + chr2_1:21835358-21835377 Msa0201060:intron 35.0%
CTAAGATGCTTGAGGAAATT+TGG + chr2_1:21835427-21835446 Msa0201060:CDS 35.0%
ACAGAAGTGGTAAAGAACTA+TGG - chr2_1:21835481-21835500 None:intergenic 35.0%
GTCATCAACTGCTTCAATAA+TGG - chr2_1:21835539-21835558 None:intergenic 35.0%
GAACAGTTCATGTGTTAACT+TGG - chr2_1:21835825-21835844 None:intergenic 35.0%
! GAAGAGGCGCAAATTTATAA+AGG - chr2_1:21835924-21835943 None:intergenic 35.0%
TTGCCTAGTTCATTCATATC+TGG + chr2_1:21835966-21835985 Msa0201060:intron 35.0%
ACTCCAGATATGAATGAACT+AGG - chr2_1:21835972-21835991 None:intergenic 35.0%
AAGTTTCTCTGCACATATCA+CGG - chr2_1:21836024-21836043 None:intergenic 35.0%
GAGCTTCCATCATTATTAAG+TGG - chr2_1:21836098-21836117 None:intergenic 35.0%
! TAATAATGATGGAAGCTCTG+TGG + chr2_1:21836100-21836119 Msa0201060:CDS 35.0%
ATGTTCTTGGTCAATAGTGT+TGG + chr2_1:21836208-21836227 Msa0201060:intron 35.0%
TTGTTAAAGTTGCCTTCGTT+TGG - chr2_1:21836292-21836311 None:intergenic 35.0%
!!! TTTTTTGAAGATAGCCAGTG+AGG + chr2_1:21836408-21836427 Msa0201060:intron 35.0%
ATTGCTCTGATATCAAGGTT+TGG - chr2_1:21836501-21836520 None:intergenic 35.0%
GATTCAGTGAAATTGCCTTA+GGG - chr2_1:21836549-21836568 None:intergenic 35.0%
TGATTCAGTGAAATTGCCTT+AGG - chr2_1:21836550-21836569 None:intergenic 35.0%
AAGATAAGCATAACGAAGAG+TGG - chr2_1:21836602-21836621 None:intergenic 35.0%
TGAAGGAGAGTCAAAACATT+TGG - chr2_1:21836637-21836656 None:intergenic 35.0%
!! TTTGACTCGATGCATTTTGA+AGG - chr2_1:21836654-21836673 None:intergenic 35.0%
! CCGCAAATGCATAATTTTGT+TGG - chr2_1:21836744-21836763 None:intergenic 35.0%
TGAGATGTGTTCCCTATTAT+AGG - chr2_1:21836771-21836790 None:intergenic 35.0%
GTGGAAGGAATCAACTAATA+AGG - chr2_1:21836859-21836878 None:intergenic 35.0%
AATGATTGGAAACTCACGAA+TGG - chr2_1:21836970-21836989 None:intergenic 35.0%
TCCCTAAAAGCAAATTTGGT+TGG + chr2_1:21837027-21837046 Msa0201060:intron 35.0%
CATTGCATGTTAAGCTTAGA+AGG - chr2_1:21837101-21837120 None:intergenic 35.0%
CTAAGCTTAACATGCAATGA+AGG + chr2_1:21837102-21837121 Msa0201060:intron 35.0%
! AAGTACTGCCAACTTTCAAA+AGG - chr2_1:21837271-21837290 None:intergenic 35.0%
! TTCTTCACTCTAAAGGGTAT+TGG - chr2_1:21837436-21837455 None:intergenic 35.0%
TGCATTAGTGACTCTGATAA+TGG + chr2_1:21837502-21837521 Msa0201060:intron 35.0%
AAGAAATTCTCCTAGACTTC+AGG + chr2_1:21837670-21837689 Msa0201060:intron 35.0%
AGAAATTCTCCTAGACTTCA+GGG + chr2_1:21837671-21837690 Msa0201060:intron 35.0%
CTGAAGGAATAAAGGTTGTT+AGG - chr2_1:21837702-21837721 None:intergenic 35.0%
TGAAGAAGCTGAAGGAATAA+AGG - chr2_1:21837710-21837729 None:intergenic 35.0%
AAGAAGATTGAAGAAGCTGA+AGG - chr2_1:21837718-21837737 None:intergenic 35.0%
GGGAACAAATGAAAACTGAA+TGG - chr2_1:21837955-21837974 None:intergenic 35.0%
CACAAGCATATGGTGAATCA+TGG + chr2_1:21834149-21834168 Msa0201060:CDS 40.0%
CATATGGTGAATCATGGTAC+TGG + chr2_1:21834155-21834174 Msa0201060:CDS 40.0%
!! TCTATCCTTGTTGTTGGTTC+TGG + chr2_1:21834274-21834293 Msa0201060:CDS 40.0%
!! GTTGTTGGTTCTGGTAATTC+AGG + chr2_1:21834283-21834302 Msa0201060:CDS 40.0%
! CACCTTTTGTGTTATGCATG+TGG + chr2_1:21834443-21834462 Msa0201060:intron 40.0%
ACTTCAATTGAGGACGATCT+CGG - chr2_1:21834613-21834632 None:intergenic 40.0%
! GGATTCACAATGATTTTGCC+AGG + chr2_1:21834781-21834800 Msa0201060:intron 40.0%
! TGATGATAGCGATGTTCTTG+AGG + chr2_1:21835073-21835092 Msa0201060:intron 40.0%
! GCTTTTGCATCAGAGACTTT+TGG + chr2_1:21835151-21835170 Msa0201060:CDS 40.0%
ACATGCTACTAAGATGCTTG+AGG + chr2_1:21835419-21835438 Msa0201060:CDS 40.0%
AGATGCTTGAGGAAATTTGG+AGG + chr2_1:21835430-21835449 Msa0201060:CDS 40.0%
!! AGCAGTTGATGACACACTAT+AGG + chr2_1:21835546-21835565 Msa0201060:intron 40.0%
!! GCAGTTGATGACACACTATA+GGG + chr2_1:21835547-21835566 Msa0201060:intron 40.0%
TATAGGGTTCTCAAGGCTAA+AGG + chr2_1:21835563-21835582 Msa0201060:intron 40.0%
GGCTAAAGGAGTCTATATTC+TGG + chr2_1:21835577-21835596 Msa0201060:CDS 40.0%
GAATACAACTCGGTACTAAG+AGG - chr2_1:21835611-21835630 None:intergenic 40.0%
! TTTTTGCACGCATTCAAGAC+CGG - chr2_1:21835680-21835699 None:intergenic 40.0%
TGAATGCGTGCAAAAATTGC+AGG + chr2_1:21835684-21835703 Msa0201060:intron 40.0%
CAAAAATTGCAGGTGACGTA+TGG + chr2_1:21835694-21835713 Msa0201060:intron 40.0%
AGCAAACGTAAGCGATATAG+TGG - chr2_1:21835724-21835743 None:intergenic 40.0%
GCCTCTTCGGTCAAATATAT+AGG + chr2_1:21835936-21835955 Msa0201060:intron 40.0%
GCCTATATATTTGACCGAAG+AGG - chr2_1:21835940-21835959 None:intergenic 40.0%
AGATTGCCGCAAATTTGAAG+TGG + chr2_1:21836345-21836364 Msa0201060:intron 40.0%
TCAAGTAAGTCCTCCTAAGT+AGG - chr2_1:21836449-21836468 None:intergenic 40.0%
GCACAATTGCTCTGATATCA+AGG - chr2_1:21836506-21836525 None:intergenic 40.0%
GTCTCAAAATTCTCTCCCTA+AGG + chr2_1:21836531-21836550 Msa0201060:intron 40.0%
TAAGCATAACGAAGAGTGGA+CGG - chr2_1:21836598-21836617 None:intergenic 40.0%
GAGCTTGAAGCTCTTTACAA+TGG + chr2_1:21837527-21837546 Msa0201060:intron 40.0%
CTTGAAGCTCTTTACAATGG+TGG + chr2_1:21837530-21837549 Msa0201060:intron 40.0%
TAGGATATACCCTGAAGTCT+AGG - chr2_1:21837683-21837702 None:intergenic 40.0%
GAAACTGCACTAGTGTGAAT+TGG + chr2_1:21837738-21837757 Msa0201060:intron 40.0%
! AGGAAACTGATAGAGCATCA+GGG - chr2_1:21837795-21837814 None:intergenic 40.0%
!!! GAGTGTTTTAACGAGATGAG+AGG - chr2_1:21837815-21837834 None:intergenic 40.0%
GCTCTAGTAGCTTGAGATTT+GGG - chr2_1:21838441-21838460 None:intergenic 40.0%
GAACAAACAGTGATGGCAAC+AGG + chr2_1:21834124-21834143 Msa0201060:exon 45.0%
GCAACAGGTACACAAGCATA+TGG + chr2_1:21834139-21834158 Msa0201060:CDS 45.0%
AACCGTTACACAAACGAACC+AGG + chr2_1:21834181-21834200 Msa0201060:CDS 45.0%
! GACCTGGTTCGTTTGTGTAA+CGG - chr2_1:21834186-21834205 None:intergenic 45.0%
! ACGAACCAGGTCCTTTTGAT+TGG + chr2_1:21834194-21834213 Msa0201060:CDS 45.0%
TGGTACCAATCAAAAGGACC+TGG - chr2_1:21834202-21834221 None:intergenic 45.0%
GCCCACATGCATAACACAAA+AGG - chr2_1:21834448-21834467 None:intergenic 45.0%
TTGTTTGCAGCGTTCAGTCA+AGG + chr2_1:21834506-21834525 Msa0201060:intron 45.0%
!! AGTCAAGGCATGGTTGATGA+AGG + chr2_1:21834521-21834540 Msa0201060:CDS 45.0%
!! GGTTGATGAAGGTGGTTACA+AGG + chr2_1:21834532-21834551 Msa0201060:CDS 45.0%
TAGAGATACTACTGCGATCC+TGG - chr2_1:21834802-21834821 None:intergenic 45.0%
GACACACTATAGGGTTCTCA+AGG + chr2_1:21835556-21835575 Msa0201060:intron 45.0%
GTCTTAGCATTTCGCCTAAC+CGG + chr2_1:21835658-21835677 Msa0201060:intron 45.0%
TCACTCCTACAGTCCTACTT+AGG + chr2_1:21836433-21836452 Msa0201060:intron 45.0%
GTCTCATTTGAGTCGTGACA+GGG - chr2_1:21836479-21836498 None:intergenic 45.0%
TGAAGAATCACTCGCCTGTT+AGG - chr2_1:21836689-21836708 None:intergenic 45.0%
TTAAGACGACGTTCGTGTAG+TGG - chr2_1:21836878-21836897 None:intergenic 45.0%
CTTATGAGAGGATCTCTCTC+TGG - chr2_1:21837589-21837608 None:intergenic 45.0%
!! CGTGTCACTTCACTTATGAG+AGG - chr2_1:21837601-21837620 None:intergenic 45.0%
TGTGAATTGGACCCGATGAT+GGG + chr2_1:21837751-21837770 Msa0201060:intron 45.0%
TCAGGGTCCAGTAAATGTGA+GGG - chr2_1:21837778-21837797 None:intergenic 45.0%
ATCAGGGTCCAGTAAATGTG+AGG - chr2_1:21837779-21837798 None:intergenic 45.0%
! GAGGAAACTGATAGAGCATC+AGG - chr2_1:21837796-21837815 None:intergenic 45.0%
! GGCTCTAGTAGCTTGAGATT+TGG - chr2_1:21838442-21838461 None:intergenic 45.0%
!!! AATTTTATAAAATTATAACA+TGG - chr2_1:21835037-21835056 None:intergenic 5.0%
!! CAAGGCATGGTTGATGAAGG+TGG + chr2_1:21834524-21834543 Msa0201060:CDS 50.0%
TGAGTTTGGCAAGATCGCAC+TGG - chr2_1:21834873-21834892 None:intergenic 50.0%
TGCTACGTGATTCATGCTCG+TGG + chr2_1:21835740-21835759 Msa0201060:CDS 50.0%
CTCTGCACATATCACGGAAG+TGG - chr2_1:21836018-21836037 None:intergenic 50.0%
AGCTCTGTGGATGAAACCCT+AGG + chr2_1:21836113-21836132 Msa0201060:CDS 50.0%
GACATCGGGATTCAGTCCTA+GGG - chr2_1:21836132-21836151 None:intergenic 50.0%
CTCCTACAGTCCTACTTAGG+AGG + chr2_1:21836436-21836455 Msa0201060:intron 50.0%
GTCCTCCTAAGTAGGACTGT+AGG - chr2_1:21836441-21836460 None:intergenic 50.0%
GGTCTCATTTGAGTCGTGAC+AGG - chr2_1:21836480-21836499 None:intergenic 50.0%
TCTCGAGAGAGAAGCAAGAC+AGG - chr2_1:21837405-21837424 None:intergenic 50.0%
AGAGGATCTCTCTCTGGTCT+TGG - chr2_1:21837583-21837602 None:intergenic 50.0%
GTGTGAATTGGACCCGATGA+TGG + chr2_1:21837750-21837769 Msa0201060:intron 50.0%
AAATGTGAGGGGCCCATCAT+CGG - chr2_1:21837766-21837785 None:intergenic 50.0%
CAGGGTCCAGTAAATGTGAG+GGG - chr2_1:21837777-21837796 None:intergenic 50.0%
CATGAATGCGCAGTTTAGCG+TGG + chr2_1:21838128-21838147 Msa0201060:exon 50.0%
AATGCGCAGTTTAGCGTGGA+AGG + chr2_1:21838132-21838151 Msa0201060:exon 50.0%
TGCAGCGTTCAGTCAAGGCA+TGG + chr2_1:21834511-21834530 Msa0201060:intron 55.0%
GCACGCATTCAAGACCGGTT+AGG - chr2_1:21835675-21835694 None:intergenic 55.0%
!! GGTTTTGTCAGCTCCCAGAG+TGG - chr2_1:21836071-21836090 None:intergenic 55.0%
GGACATCGGGATTCAGTCCT+AGG - chr2_1:21836133-21836152 None:intergenic 55.0%
CTGTAGGAGTGACACCTCAC+TGG - chr2_1:21836425-21836444 None:intergenic 55.0%
! GACGACGTTCGTGTAGTGGA+AGG - chr2_1:21836874-21836893 None:intergenic 55.0%
AATGTGAGGGGCCCATCATC+GGG - chr2_1:21837765-21837784 None:intergenic 55.0%
GATGGGCCCCTCACATTTAC+TGG + chr2_1:21837768-21837787 Msa0201060:intron 55.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 21834049 21838517 21834049 ID=Msa0201060;Name=Msa0201060
chr2_1 mRNA 21834049 21838517 21834049 ID=Msa0201060-mRNA-1;Parent=Msa0201060;Name=Msa0201060-mRNA-1;_AED=0.16;_eAED=0.16;_QI=87|1|1|1|1|1|9|385|236
chr2_1 exon 21834049 21834304 21834049 ID=Msa0201060-mRNA-1:exon:8769;Parent=Msa0201060-mRNA-1
chr2_1 exon 21834516 21834632 21834516 ID=Msa0201060-mRNA-1:exon:8770;Parent=Msa0201060-mRNA-1
chr2_1 exon 21835122 21835190 21835122 ID=Msa0201060-mRNA-1:exon:8771;Parent=Msa0201060-mRNA-1
chr2_1 exon 21835299 21835318 21835299 ID=Msa0201060-mRNA-1:exon:8772;Parent=Msa0201060-mRNA-1
chr2_1 exon 21835399 21835451 21835399 ID=Msa0201060-mRNA-1:exon:8773;Parent=Msa0201060-mRNA-1
chr2_1 exon 21835568 21835598 21835568 ID=Msa0201060-mRNA-1:exon:8774;Parent=Msa0201060-mRNA-1
chr2_1 exon 21835706 21835784 21835706 ID=Msa0201060-mRNA-1:exon:8775;Parent=Msa0201060-mRNA-1
chr2_1 exon 21836036 21836175 21836036 ID=Msa0201060-mRNA-1:exon:8776;Parent=Msa0201060-mRNA-1
chr2_1 exon 21838100 21838517 21838100 ID=Msa0201060-mRNA-1:exon:8777;Parent=Msa0201060-mRNA-1
chr2_1 five_prime_UTR 21834049 21834135 21834049 ID=Msa0201060-mRNA-1:five_prime_utr;Parent=Msa0201060-mRNA-1
chr2_1 CDS 21834136 21834304 21834136 ID=Msa0201060-mRNA-1:cds;Parent=Msa0201060-mRNA-1
chr2_1 CDS 21834516 21834632 21834516 ID=Msa0201060-mRNA-1:cds;Parent=Msa0201060-mRNA-1
chr2_1 CDS 21835122 21835190 21835122 ID=Msa0201060-mRNA-1:cds;Parent=Msa0201060-mRNA-1
chr2_1 CDS 21835299 21835318 21835299 ID=Msa0201060-mRNA-1:cds;Parent=Msa0201060-mRNA-1
chr2_1 CDS 21835399 21835451 21835399 ID=Msa0201060-mRNA-1:cds;Parent=Msa0201060-mRNA-1
chr2_1 CDS 21835568 21835598 21835568 ID=Msa0201060-mRNA-1:cds;Parent=Msa0201060-mRNA-1
chr2_1 CDS 21835706 21835784 21835706 ID=Msa0201060-mRNA-1:cds;Parent=Msa0201060-mRNA-1
chr2_1 CDS 21836036 21836175 21836036 ID=Msa0201060-mRNA-1:cds;Parent=Msa0201060-mRNA-1
chr2_1 CDS 21838100 21838132 21838100 ID=Msa0201060-mRNA-1:cds;Parent=Msa0201060-mRNA-1
chr2_1 three_prime_UTR 21838133 21838517 21838133 ID=Msa0201060-mRNA-1:three_prime_utr;Parent=Msa0201060-mRNA-1
Gene Sequence

>Msa0201060

ATGGCAACAGGTACACAAGCATATGGTGAATCATGGTACTGGGACAACCGTTACACAAACGAACCAGGTCCTTTTGATTGGTACCAAAAGTATATTACTTTGGCTCCTATCATCAATCTCTATGTTCCCAAGAACCAATCTATCCTTGTTGTTGGTTCTGGTAATTCAGCGTTCAGTCAAGGCATGGTTGATGAAGGTGGTTACAAGGATGTTGTGAACATTGATATTTCTTCAGTGGTCATTGATGCTATGCAGAAGAAATACCGAGATCGTCCTCAATTGAAGTATTTGAAAATGGATGTCAGAGACATGAGTGCTTTTGCATCAGAGACTTTTGGTTCTGTTATTGACAAAGGAACTCTTGATTCTATCTTGTGTGGAAACAATTCAAGACAACATGCTACTAAGATGCTTGAGGAAATTTGGAGGGTTCTCAAGGCTAAAGGAGTCTATATTCTGGTGACGTATGGAGCTCCACTATATCGCTTACGTTTGCTACGTGATTCATGCTCGTGGACAATTAAACTCCATGTAATAGAGAAACTTGCATCAGAAGAAAAATCTGATAATCCACTCTGGGAGCTGACAAAACCTATTCCACTTAATAATGATGGAAGCTCTGTGGATGAAACCCTAGGACTGAATCCCGATGTCCATTATATATACATTTGCACTAAGGAAATTTCTGCTAACTCAAACGTAAAAGCATGA

Protein sequence

>Msa0201060

MATGTQAYGESWYWDNRYTNEPGPFDWYQKYITLAPIINLYVPKNQSILVVGSGNSAFSQGMVDEGGYKDVVNIDISSVVIDAMQKKYRDRPQLKYLKMDVRDMSAFASETFGSVIDKGTLDSILCGNNSRQHATKMLEEIWRVLKAKGVYILVTYGAPLYRLRLLRDSCSWTIKLHVIEKLASEEKSDNPLWELTKPIPLNNDGSSVDETLGLNPDVHYIYICTKEISANSNVKA*