AlfalfaGEDB | Msa0243720

M. sativa cultivar zhongmu-4 / Msa0243720

KEGG: -
GO: -
PFAM: PF08241.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243720	XP_003594886.1	96.610	236	1	1	1	229	1	236	4.44e-165	465

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243720	sp\|Q8N6R0\|EFNMT_HUMAN	28.899	218	125	10	1	193	4	216	1.78e-22	98.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243720	G7INF4	96.610	236	1	1	1	229	1	236	2.12e-165	465

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0034970	Msa0243720	0.810199	1.297869e-50	-8.615850e-47
Msa0037880	Msa0243720	0.805331	1.405655e-49	-8.615850e-47
Msa0151180	Msa0243720	0.814828	1.262676e-51	-8.615850e-47
Msa0166870	Msa0243720	0.807867	4.097391e-50	-8.615850e-47
Msa0201060	Msa0243720	0.840830	6.865451e-58	-8.615850e-47
Msa0205510	Msa0243720	0.800420	1.453168e-48	-8.615850e-47
Msa0222340	Msa0243720	0.811454	6.944227e-51	-8.615850e-47
Msa0243720	Msa0282260	0.870993	9.588786e-67	-8.615850e-47
Msa0243720	Msa0287410	0.806310	8.754671e-50	-8.615850e-47
Msa0243720	Msa0287650	0.803313	3.699397e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243720	MtrunA17_Chr2g0297031	90.476	252	1	2	1	229	1	252	3.52e-165	456
Msa0243720	MtrunA17_Chr4g0020211	42.128	235	125	4	2	226	7	240	1.42e-56	180
Msa0243720	MtrunA17_Chr8g0378231	35.762	151	82	6	14	150	25	174	1.77e-19	86.7
Msa0243720	MtrunA17_Chr4g0034381	27.869	183	113	6	3	168	15	195	3.34e-18	80.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243720	AT3G17365.1	66.109	239	70	4	1	229	1	238	1.83e-114	327
Msa0243720	AT3G17365.2	52.708	277	82	7	1	229	1	276	1.53e-92	273
Msa0243720	AT3G60910.1	39.738	229	127	4	2	220	7	234	8.12e-56	179
Msa0243720	AT3G60910.2	39.306	173	94	4	58	220	1	172	1.51e-36	127
Msa0243720	AT4G34360.1	29.050	179	108	7	7	168	14	190	7.63e-18	80.1
Msa0243720	AT2G31740.1	30.645	186	109	8	14	181	29	212	2.23e-14	72.4

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Find 63 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTGATAATCCACTCT+GGG	0.552145	2_2:-21036287	Msa0243720:CDS
AAAGAAAGAACAAACAGTGA+TGG	0.585787	2_2:-21038222	Msa0243720:exon
AACAAGGATAGATTGGTTCT+TGG	0.386383	2_2:+21038076	None:intergenic
AACCAACAACAAGGATAGAT+TGG	0.452329	2_2:+21038069	None:intergenic
AACCAATCTATCCTTGTTGT+TGG	0.393670	2_2:-21038071	Msa0243720:CDS
AACCGTTACACAAACGAACC+AGG	0.571683	2_2:-21038158	Msa0243720:CDS
AATCACAACTGTATTACAAA+TGG	0.483068	2_2:+21033973	None:intergenic
AATGCGCAGTTTAGCGTGGA+AGG	0.561445	2_2:-21034205	Msa0243720:three_prime_UTR
AATGTATATATAATGGACAT+CGG	0.584034	2_2:+21036198	None:intergenic
AATTACCAGAACCAACAACA+AGG	0.677098	2_2:+21038060	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCGATCTTCAATATGTTGTT+TGG	+	chr2_2:21033891-21033910	None:intergenic	30.0%
AAAGAAAGAACAAACAGTGA+TGG	-	chr2_2:21033910-21033929	Msa0243720:three_prime_UTR	30.0%
ATGAAAAAGAATAAATGGGG+TGG	+	chr2_2:21034170-21034189	None:intergenic	30.0%
GAACATTGATATATCTTCAG+TGG	-	chr2_2:21034352-21034371	Msa0243720:intron	30.0%
ATAAGGATACACTTCAATTG+AGG	+	chr2_2:21034413-21034432	None:intergenic	30.0%
AAGACATCAAAGTGTATGTT+TGG	-	chr2_2:21034550-21034569	Msa0243720:intron	30.0%
AATCCAAAATGAAACAGAAG+TGG	+	chr2_2:21035284-21035303	None:intergenic	30.0%
TTAAACTCCATGTAATAGGT+TGG	-	chr2_2:21035557-21035576	Msa0243720:intron	30.0%
CATAAATAGGATGCTTCAAA+GGG	+	chr2_2:21035687-21035706	None:intergenic	30.0%
ACATAAATAGGATGCTTCAA+AGG	+	chr2_2:21035688-21035707	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	21033842	21038312	21033842	ID=Msa0243720;Name=Msa0243720
chr2_2	mRNA	21033842	21038312	21033842	ID=Msa0243720-mRNA-1;Parent=Msa0243720;Name=Msa0243720-mRNA-1;_AED=0.16;_eAED=0.16;_QI=87\|0.87\|0.77\|1\|1\|1\|9\|385\|229
chr2_2	exon	21033842	21034259	21033842	ID=Msa0243720-mRNA-1:exon:8428;Parent=Msa0243720-mRNA-1
chr2_2	exon	21036189	21036328	21036189	ID=Msa0243720-mRNA-1:exon:8427;Parent=Msa0243720-mRNA-1
chr2_2	exon	21036580	21036658	21036580	ID=Msa0243720-mRNA-1:exon:8426;Parent=Msa0243720-mRNA-1
chr2_2	exon	21036766	21036796	21036766	ID=Msa0243720-mRNA-1:exon:8425;Parent=Msa0243720-mRNA-1
chr2_2	exon	21036913	21036965	21036913	ID=Msa0243720-mRNA-1:exon:8424;Parent=Msa0243720-mRNA-1
chr2_2	exon	21037046	21037065	21037046	ID=Msa0243720-mRNA-1:exon:8423;Parent=Msa0243720-mRNA-1
chr2_2	exon	21037174	21037223	21037174	ID=Msa0243720-mRNA-1:exon:8422;Parent=Msa0243720-mRNA-1
chr2_2	exon	21037734	21037848	21037734	ID=Msa0243720-mRNA-1:exon:8421;Parent=Msa0243720-mRNA-1
chr2_2	exon	21038057	21038312	21038057	ID=Msa0243720-mRNA-1:exon:8420;Parent=Msa0243720-mRNA-1
chr2_2	five_prime_UTR	21038226	21038312	21038226	ID=Msa0243720-mRNA-1:five_prime_utr;Parent=Msa0243720-mRNA-1
chr2_2	CDS	21038057	21038225	21038057	ID=Msa0243720-mRNA-1:cds;Parent=Msa0243720-mRNA-1
chr2_2	CDS	21037734	21037848	21037734	ID=Msa0243720-mRNA-1:cds;Parent=Msa0243720-mRNA-1
chr2_2	CDS	21037174	21037223	21037174	ID=Msa0243720-mRNA-1:cds;Parent=Msa0243720-mRNA-1
chr2_2	CDS	21037046	21037065	21037046	ID=Msa0243720-mRNA-1:cds;Parent=Msa0243720-mRNA-1
chr2_2	CDS	21036913	21036965	21036913	ID=Msa0243720-mRNA-1:cds;Parent=Msa0243720-mRNA-1
chr2_2	CDS	21036766	21036796	21036766	ID=Msa0243720-mRNA-1:cds;Parent=Msa0243720-mRNA-1
chr2_2	CDS	21036580	21036658	21036580	ID=Msa0243720-mRNA-1:cds;Parent=Msa0243720-mRNA-1
chr2_2	CDS	21036189	21036328	21036189	ID=Msa0243720-mRNA-1:cds;Parent=Msa0243720-mRNA-1
chr2_2	CDS	21034227	21034259	21034227	ID=Msa0243720-mRNA-1:cds;Parent=Msa0243720-mRNA-1
chr2_2	three_prime_UTR	21033842	21034226	21033842	ID=Msa0243720-mRNA-1:three_prime_utr;Parent=Msa0243720-mRNA-1

Gene Sequence

>Msa0243720

ATGGCAACAGGTACACAAGCATATGGTGAATCATGGTACTGGGACAACCGTTACACAAACGAACCAGGTCCTTTTGATTGGTACCAAAAGTATATTACTTTGGCTCCTATCATCAATCTCTATGTTCCCAAGAACCAATCTATCCTTGTTGTTGGTTCTGGTAATTCAGCGTTCAGTCAAGGCATGGTTGATGAAGGTGGTTACAAGGATGTTGTGAACATTGATATATCTTCAGTGGTCATTGATGCTATGCAGAAGAAATACCGAGATCGTCCTCAATTGAAAGACATGAGTGCTTTTGCATCAGAGACTTTTGGTTCTGTTATTGACAAAGGAACTCTTGATTCTATCTTGTGTGGAAACAATTCAAGACAACATGCTACTAAGATGCTTGAGGAAATTTGGAGGGTTCTCAAGGCTAAAGGAGTCTATATTCTGGTGACGTATGGAGCTCCACTATATCGCTTACGTTTGCTACGTGATTCATGCTCGTGGACAATTAAACTCCATGTAATAGAGAAACTTGCATCAGAAGAAAAATCTGATAATCCACTCTGGGAGCTGACAAAACCTATTCCACTTAATAATGATGGAAGCTCTGTGGATGAAACCCTAGGACTGAATCCCGATGTCCATTATATATACATTTGCACTAAGGAAATTTCTGCTAACTCAAACGTAAAAGCATGA

Protein sequence

>Msa0243720

MATGTQAYGESWYWDNRYTNEPGPFDWYQKYITLAPIINLYVPKNQSILVVGSGNSAFSQGMVDEGGYKDVVNIDISSVVIDAMQKKYRDRPQLKDMSAFASETFGSVIDKGTLDSILCGNNSRQHATKMLEEIWRVLKAKGVYILVTYGAPLYRLRLLRDSCSWTIKLHVIEKLASEEKSDNPLWELTKPIPLNNDGSSVDETLGLNPDVHYIYICTKEISANSNVKA*