AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0282630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0282630 MtrunA17_Chr2g0297871 91.699 518 36 1 393 903 159 676 0.0 970
Msa0282630 MtrunA17_Chr2g0297871 78.022 182 32 2 179 358 27 202 1.74e-77 266
Msa0282630 MtrunA17_Chr4g0071991 63.115 366 133 2 416 779 339 704 1.53e-145 458
Msa0282630 MtrunA17_Chr4g0071991 53.371 356 162 1 3 358 8 359 1.19e-116 381
Msa0282630 MtrunA17_Chr2g0297861 96.685 181 6 0 1 181 1 181 3.65e-119 360
Msa0282630 MtrunA17_Chr2g0297051 29.681 721 366 23 85 749 343 978 1.68e-66 241
Msa0282630 MtrunA17_Chr5g0397621 26.524 656 369 17 156 782 313 884 5.09e-59 218
Msa0282630 MtrunA17_Chr4g0053441 26.177 722 377 19 117 775 163 791 3.96e-52 196
Msa0282630 MtrunA17_Chr4g0052521 32.861 353 207 9 417 746 595 940 3.46e-47 182
Msa0282630 MtrunA17_Chr4g0052521 24.586 362 215 8 12 317 203 562 9.80e-20 95.1
Msa0282630 MtrunA17_Chr8g0339181 33.156 377 209 11 413 763 572 931 1.14e-45 177
Msa0282630 MtrunA17_Chr8g0339181 30.857 175 108 3 154 317 373 545 1.37e-19 94.7
Msa0282630 MtrunA17_Chr4g0050431 33.934 333 194 6 417 730 532 857 6.08e-41 162
Msa0282630 MtrunA17_Chr4g0050431 35.632 174 102 3 143 308 324 495 9.38e-19 92.0
Msa0282630 MtrunA17_Chr3g0136331 31.755 359 215 9 411 746 493 844 1.10e-40 162
Msa0282630 MtrunA17_Chr3g0136331 39.252 107 65 0 203 309 354 460 4.74e-18 89.7
Msa0282630 MtrunA17_Chr8g0374391 32.836 201 116 7 591 781 35 226 4.27e-21 93.6
Msa0282630 MtrunA17_Chr8g0374331 32.836 201 116 7 591 781 42 233 5.25e-21 93.6
Msa0282630 MtrunA17_Chr8g0374321 27.500 240 151 5 91 311 334 569 2.59e-19 93.6
Msa0282630 MtrunA17_Chr8g0374371 35.714 112 71 1 201 311 22 133 1.82e-17 82.8
Msa0282630 MtrunA17_Chr7g0263361 26.794 209 112 5 591 758 626 834 3.07e-14 77.4
Msa0282630 MtrunA17_Chr8g0346461 29.384 211 106 6 591 758 619 829 3.14e-14 77.4
Msa0282630 MtrunA17_Chr7g0260401 30.303 165 83 3 588 720 669 833 4.74e-14 76.6
Msa0282630 MtrunA17_Chr8g0355421 27.143 210 115 6 588 759 636 845 5.25e-14 76.6
Msa0282630 MtrunA17_Chr6g0456201 28.571 210 109 8 590 758 640 849 1.90e-13 74.7
Msa0282630 MtrunA17_Chr3g0134951 28.571 210 108 8 590 758 582 790 2.76e-12 70.9
Msa0282630 MtrunA17_Chr2g0298871 26.702 191 106 4 564 720 666 856 5.04e-12 70.1
Msa0282630 MtrunA17_Chr8g0382071 27.168 173 99 3 575 720 632 804 6.39e-12 69.7
Msa0282630 MtrunA17_Chr3g0134771 27.404 208 114 7 588 758 648 855 8.12e-12 69.7
Msa0282630 MtrunA17_Chr4g0020551 28.662 157 86 3 590 720 583 739 4.18e-11 67.0
Msa0282630 MtrunA17_Chr4g0054021 25.837 209 117 7 588 758 568 776 6.33e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0282630 AT2G19110.2 54.792 480 176 9 394 847 323 787 9.12e-166 515
Msa0282630 AT2G19110.2 56.646 316 137 0 5 320 16 331 4.11e-102 345
Msa0282630 AT2G19110.3 54.792 480 176 9 394 847 323 787 9.12e-166 515
Msa0282630 AT2G19110.3 56.646 316 137 0 5 320 16 331 4.11e-102 345
Msa0282630 AT2G19110.1 54.792 480 176 9 394 847 323 787 9.12e-166 515
Msa0282630 AT2G19110.1 56.646 316 137 0 5 320 16 331 4.11e-102 345
Msa0282630 AT4G30110.1 57.269 454 161 7 394 830 313 750 3.10e-165 507
Msa0282630 AT4G30110.1 53.896 308 142 0 3 310 4 311 6.59e-109 358
Msa0282630 AT4G30110.2 57.269 454 161 7 394 830 313 750 3.10e-165 507
Msa0282630 AT4G30110.2 53.896 308 142 0 3 310 4 311 6.59e-109 358
Msa0282630 AT4G30120.1 53.420 307 143 0 4 310 11 317 4.57e-110 350
Msa0282630 AT4G30120.1 59.211 228 82 3 394 614 319 542 1.35e-79 268
Msa0282630 AT4G30120.2 59.211 228 82 3 394 614 160 383 1.77e-81 268
Msa0282630 AT4G30120.2 56.962 158 68 0 153 310 1 158 5.15e-59 207
Msa0282630 AT5G44790.1 27.494 822 426 21 10 744 211 949 1.18e-69 251
Msa0282630 AT1G63440.1 26.707 659 368 20 156 782 406 981 2.22e-57 214
Msa0282630 AT4G37270.1 27.542 708 370 22 119 770 161 781 3.06e-45 176
Msa0282630 AT5G21930.3 32.092 349 213 10 417 746 470 813 5.92e-40 160
Msa0282630 AT5G21930.2 32.092 349 213 10 417 746 493 836 7.74e-40 159
Msa0282630 AT5G21930.2 27.273 231 137 4 110 309 221 451 2.46e-15 81.3
Msa0282630 AT5G21930.1 32.092 349 213 10 417 746 493 836 7.74e-40 159
Msa0282630 AT5G21930.1 27.273 231 137 4 110 309 221 451 2.46e-15 81.3
Msa0282630 AT4G33520.2 30.496 423 242 10 403 786 528 937 4.73e-39 157
Msa0282630 AT4G33520.2 32.195 205 120 4 123 308 302 506 3.82e-19 93.6
Msa0282630 AT4G33520.3 30.622 418 248 11 403 786 528 937 9.94e-39 156
Msa0282630 AT4G33520.3 32.195 205 120 4 123 308 302 506 3.99e-19 93.6
Msa0282630 AT5G21930.4 33.016 315 189 9 417 712 493 804 7.72e-36 146
Msa0282630 AT5G21930.4 27.273 231 137 4 110 309 221 451 1.47e-15 82.0
Msa0282630 AT1G07810.1 28.230 209 109 6 591 758 621 829 3.99e-14 77.4
Msa0282630 AT2G41560.2 31.447 159 83 4 588 720 538 696 6.46e-14 76.6
Msa0282630 AT2G41560.3 31.447 159 83 4 588 720 538 696 6.46e-14 76.6
Msa0282630 AT2G41560.4 31.447 159 83 4 588 720 538 696 6.46e-14 76.6
Msa0282630 AT2G41560.1 31.447 159 83 4 588 720 640 798 6.51e-14 76.6
Msa0282630 AT3G21180.1 31.056 161 80 3 591 720 691 851 1.03e-13 76.3
Msa0282630 AT1G07670.2 27.751 209 110 6 591 758 621 829 1.34e-13 75.9
Msa0282630 AT1G07670.1 27.751 209 110 6 591 758 621 829 1.34e-13 75.9
Msa0282630 AT3G57330.2 31.056 161 85 3 586 720 580 740 1.34e-13 75.9
Msa0282630 AT3G57330.1 31.056 161 85 3 586 720 635 795 1.47e-13 75.5
Msa0282630 AT4G00900.2 28.436 211 108 6 591 758 615 825 3.32e-13 74.3
Msa0282630 AT4G00900.1 28.436 211 108 6 591 758 615 825 3.32e-13 74.3
Msa0282630 AT1G10130.1 26.339 224 123 7 576 758 567 789 3.35e-13 74.3

Find 166 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACACTTAATATCAACATTT+TGG 0.187726 2_3:+19048048 Msa0282630:CDS
GGTAATATTGATGAGGAAAA+AGG 0.221060 2_3:+19051437 Msa0282630:CDS
CCTCGTTGGCCAACTTTATT+GGG 0.224189 2_3:+19049407 Msa0282630:CDS
GATTCCCTAAAGTTCTATTT+CGG 0.234090 2_3:+19048002 Msa0282630:CDS
ACCTCGTTGGCCAACTTTAT+TGG 0.236947 2_3:+19049406 Msa0282630:CDS
ATTCCCTAAAGTTCTATTTC+GGG 0.264491 2_3:+19048003 Msa0282630:CDS
ATAGCCCGAAATAGAACTTT+AGG 0.268489 2_3:-19048007 None:intergenic
GACAAGTGAATCTGATTCTT+TGG 0.271282 2_3:-19048650 None:intergenic
TCAACCAAAGGTTGGAAATA+TGG 0.276728 2_3:+19051371 Msa0282630:CDS
CTTATTTCTGAGTCACAAAT+AGG 0.288449 2_3:+19047528 Msa0282630:CDS
GAAGTATATATATCCTCCTT+TGG 0.321866 2_3:+19047949 Msa0282630:CDS
CTTGCTAAACGAATCGCTTC+AGG 0.323239 2_3:-19051158 None:intergenic
TTCAACAAGTCTTGACATTC+GGG 0.326874 2_3:-19049030 None:intergenic
CTTCAACAAGTCTTGACATT+CGG 0.330130 2_3:-19049031 None:intergenic
TTGTAGATCAGGTGCTTTAG+AGG 0.332991 2_3:+19050691 Msa0282630:CDS
TTGCAGGTTATCCATTAGTT+TGG 0.335285 2_3:+19051255 Msa0282630:CDS
TGCAATTGCCAATGCAAGTA+TGG 0.340232 2_3:-19051237 None:intergenic
AGATTCTAGCATTGCTACTT+TGG 0.341996 2_3:+19051643 Msa0282630:CDS
CCTTTGGGATGGTTGGCTCT+TGG 0.343324 2_3:+19047965 Msa0282630:CDS
CATGTCATTGTAAGTATATC+TGG 0.344267 2_3:-19047899 None:intergenic
TGAAACCATGGCTCCATATC+AGG 0.347039 2_3:-19049721 None:intergenic
TTGCTTGTTAAGTAATGGTT+TGG 0.349064 2_3:-19051414 None:intergenic
TTTACCATATTTCCAACCTT+TGG 0.355370 2_3:-19051375 None:intergenic
ATTAAGTGTAAGAGCTCTAA+TGG 0.356517 2_3:-19048035 None:intergenic
TGCATTAAGTGTTCCTGATA+TGG 0.359374 2_3:+19049708 Msa0282630:CDS
AAGAATCAGATTCACTTGTC+TGG 0.360703 2_3:+19048653 Msa0282630:CDS
AAGTATATATATCCTCCTTT+GGG 0.370351 2_3:+19047950 Msa0282630:CDS
TCCACTAGTGCACCTGCAAC+TGG 0.371991 2_3:-19050275 None:intergenic
CCATCTCCTATCATGGCTAT+TGG 0.374342 2_3:-19051014 None:intergenic
TGAGAACTCTCCTCTTGTTA+TGG 0.378498 2_3:-19049917 None:intergenic
CTTGTTGATGCTTGTAGATC+AGG 0.378715 2_3:+19050680 Msa0282630:CDS
ATACTTGCATTGGCAATTGC+AGG 0.384606 2_3:+19051239 Msa0282630:CDS
AGAAGCAACTTTGAAGTGTT+AGG 0.384803 2_3:+19047387 Msa0282630:CDS
GCTCTTGGTTCTGTTGCCAT+TGG 0.386825 2_3:+19047980 Msa0282630:CDS
TTTGCAAAGTACTATATTCC+GGG 0.394600 2_3:+19049098 Msa0282630:CDS
GGGGATGCTATTCCTCTTGA+TGG 0.397139 2_3:+19048562 Msa0282630:CDS
CTGCTGTGCTACACGAATAC+TGG 0.402208 2_3:-19049270 None:intergenic
ATTGAGAATTTCAAGAAAGA+AGG 0.407323 2_3:+19050990 Msa0282630:CDS
AGATCCCTTGAACGAGGTCT+CGG 0.408561 2_3:-19049474 None:intergenic
AAATCAAGTCATCCAGTTGC+AGG 0.411992 2_3:+19050263 Msa0282630:CDS
AGAATTCTGAAGCCTCTTCA+TGG 0.416439 2_3:+19047444 Msa0282630:CDS
TAGCCCGAAATAGAACTTTA+GGG 0.416686 2_3:-19048006 None:intergenic
ACCATCCTTGCAGTCAAGGC+TGG 0.419999 2_3:+19048541 Msa0282630:CDS
GATGGTAGGGATATCTATAT+AGG 0.424581 2_3:+19050386 Msa0282630:CDS
ATGGAAGAGCTAAAGTCATT+AGG 0.429049 2_3:+19050716 Msa0282630:CDS
ATATCCTCCTTTGGGATGGT+TGG 0.437705 2_3:+19047958 Msa0282630:CDS
GAATCTGATTCTTTGGTGAC+AGG 0.441289 2_3:-19048643 None:intergenic
AACAAACATGGCTCCTCAAA+TGG 0.446699 2_3:+19048465 Msa0282630:CDS
TTACCTTGCTTGTTAAGTAA+TGG 0.454151 2_3:-19051419 None:intergenic
CTCACAAAAGCTGCAATAAG+TGG 0.455717 2_3:+19049820 Msa0282630:CDS
TGAGACAAAAGCAACTCATA+AGG 0.457666 2_3:+19048282 Msa0282630:CDS
GGCATATCAATGGGAATCTC+AGG 0.458989 2_3:+19051074 Msa0282630:CDS
ATGGCCATTGTTGCTGAGAC+CGG 0.460680 2_3:+19048484 Msa0282630:CDS
CAAATCATGATTCTGAATCA+TGG 0.461760 2_3:-19049315 None:intergenic
TGCCAATGGCTAATCTCCAC+TGG 0.462803 2_3:+19049380 Msa0282630:CDS
TGCTATGTATGTTCAAAGTC+AGG 0.468166 2_3:+19050778 Msa0282630:CDS
GATCCCTTGAACGAGGTCTC+GGG 0.474512 2_3:-19049473 None:intergenic
TCAGATTCACTTGTCTGGGC+TGG 0.474967 2_3:+19048658 Msa0282630:CDS
ATTCTGAATCATGGACATAT+CGG 0.475474 2_3:-19049306 None:intergenic
CAAATCTGCCATACTTGCAT+TGG 0.477294 2_3:+19051229 Msa0282630:CDS
GAAGGGCCAATAGCCATGAT+AGG 0.478048 2_3:+19051008 Msa0282630:CDS
CGAGCTTCTACCACATGAAA+AGG 0.481888 2_3:+19050959 Msa0282630:CDS
AACACAGCTAGCCAAACTAA+TGG 0.482566 2_3:-19051266 None:intergenic
CCCAGCCTTGACTGCAAGGA+TGG 0.485971 2_3:-19048542 None:intergenic
TGGCCATTGTTGCTGAGACC+GGG 0.486976 2_3:+19048485 Msa0282630:CDS
ACAATGAAAACTTACTGTAC+TGG 0.487162 2_3:+19049971 Msa0282630:CDS
GTCAGATCAGTCATGCTGAC+AGG 0.495318 2_3:+19050740 Msa0282630:CDS
GAGAATGTCATAATTTCAGT+TGG 0.496370 2_3:+19051203 Msa0282630:CDS
CCATCCTTGCAGTCAAGGCT+GGG 0.498033 2_3:+19048542 Msa0282630:CDS
ATCAGGTGCTTTAGAGGCAA+TGG 0.498112 2_3:+19050697 Msa0282630:CDS
GTTTCTTGGTAGAAATCTCA+TGG 0.500125 2_3:-19050622 None:intergenic
CTACACGAATACTGGCTTTG+AGG 0.500478 2_3:-19049262 None:intergenic
TAAACCCGAGACCTCGTTCA+AGG 0.500499 2_3:+19049469 Msa0282630:CDS
AGCAGACATAGGCATATCAA+TGG 0.501305 2_3:+19051064 Msa0282630:CDS
TCCAGTTGCAGGTGCACTAG+TGG 0.501308 2_3:+19050274 Msa0282630:CDS
TCAAAGTTGAGTTTACTCAA+TGG 0.506061 2_3:+19051557 Msa0282630:CDS
AGAATCAGATTCACTTGTCT+GGG 0.506902 2_3:+19048654 Msa0282630:CDS
ATGTTTGTTGAAGTTCATGT+TGG 0.507730 2_3:+19051599 Msa0282630:CDS
TCAGGAACACTTAATGCAGC+TGG 0.510078 2_3:-19049703 None:intergenic
ATTTATGCCATCTCCTATCA+TGG 0.512117 2_3:-19051021 None:intergenic
TCCTCTTGATGGAATTGTTG+TGG 0.512231 2_3:+19048573 Msa0282630:CDS
CAACAAACATAAACTTTCCA+TGG 0.513388 2_3:-19051586 None:intergenic
AACTGTGGAGAAACTCTAGT+TGG 0.514078 2_3:+19050647 Msa0282630:CDS
ATTGACATCAACACGTTCCC+CGG 0.514951 2_3:-19048503 None:intergenic
TTGAGAATTTCAAGAAAGAA+GGG 0.523815 2_3:+19050991 Msa0282630:CDS
TATATAGGAAACAAGAGAGT+TGG 0.528816 2_3:+19050401 Msa0282630:CDS
TCATTATTGGTCTCTCCTTG+TGG 0.530580 2_3:-19047866 None:intergenic
GTCAGAGCTATATGTAAAAG+AGG 0.530799 2_3:+19050425 Msa0282630:CDS
CAGAAATAAGCAGAACATCA+TGG 0.533773 2_3:-19047515 None:intergenic
CATCCCCAGCCTTGACTGCA+AGG 0.534890 2_3:-19048546 None:intergenic
AAAGAGAATCAACCAAAGGT+TGG 0.535439 2_3:+19051363 Msa0282630:CDS
ATGTCTGCTGTAGCTAATGC+AGG 0.535477 2_3:-19051050 None:intergenic
AAGGTTGCACTCTATCAAAC+CGG 0.541715 2_3:+19050304 Msa0282630:CDS
GAACACCATCCTTGCAGTCA+AGG 0.543189 2_3:+19048537 Msa0282630:CDS
AGAGCACAAAAGATTGCAAC+TGG 0.543642 2_3:-19049799 None:intergenic
GCTGGAACTATTAATATGAA+TGG 0.544847 2_3:+19048676 Msa0282630:CDS
CTAGCTGTGTTAACCGATGT+TGG 0.553373 2_3:+19051278 Msa0282630:CDS
GTTGATGATATAAGTAGCAT+AGG 0.553429 2_3:+19051734 Msa0282630:CDS
GCCAATGGCTAATCTCCACT+GGG 0.553637 2_3:+19049381 Msa0282630:CDS
TCATGGAGTCAAAGCTGTCT+CGG 0.554892 2_3:+19047461 Msa0282630:CDS
CCCAATAAAGTTGGCCAACG+AGG 0.556912 2_3:-19049407 None:intergenic
TCAGCAACAATGGCCATTTG+AGG 0.557213 2_3:-19048478 None:intergenic
ACGGGAGACCCCAATAAAGT+TGG 0.557373 2_3:-19049416 None:intergenic
GCAGACATAGGCATATCAAT+GGG 0.558526 2_3:+19051065 Msa0282630:CDS
GATTTCAGCTAGCATTGCAG+TGG 0.558685 2_3:+19049678 Msa0282630:CDS
TGTTTGTTGAAGTTCATGTT+GGG 0.561308 2_3:+19051600 Msa0282630:CDS
ACAAGAAAAGATGAATCTTG+TGG 0.567250 2_3:+19051530 Msa0282630:CDS
TTCTGTTCTCTATTGCTCAG+TGG 0.567993 2_3:+19048257 Msa0282630:CDS
ATAAGTGGATTACTATTGAA+AGG 0.569583 2_3:+19049835 Msa0282630:CDS
CAAACCGGTACCAGAAAATG+TGG 0.570499 2_3:+19050319 Msa0282630:CDS
GCATTAGCTACAGCAGACAT+AGG 0.570742 2_3:+19051053 Msa0282630:CDS
CCAATAGCCATGATAGGAGA+TGG 0.570907 2_3:+19051014 Msa0282630:CDS
TCCACAACAATTCCATCAAG+AGG 0.572437 2_3:-19048574 None:intergenic
GGCCATTGTTGCTGAGACCG+GGG 0.573376 2_3:+19048486 Msa0282630:CDS
CCCCAGTGGAGATTAGCCAT+TGG 0.574370 2_3:-19049382 None:intergenic
ATATATATCCTCCTTTGGGA+TGG 0.576773 2_3:+19047954 Msa0282630:CDS
AGATTAGCCATTGGCAAAGT+CGG 0.578297 2_3:-19049373 None:intergenic
GTGTTCCTGATATGGAGCCA+TGG 0.579497 2_3:+19049716 Msa0282630:CDS
ATGGTTTCATCTAGCCCTTG+TGG 0.584633 2_3:+19049735 Msa0282630:CDS
TCTCCACTGGGGAACCTCGT+TGG 0.591081 2_3:+19049393 Msa0282630:CDS
ACAGCTTTGACTCCATGAAG+AGG 0.594671 2_3:-19047456 None:intergenic
CACGAATACTGGCTTTGAGG+TGG 0.595947 2_3:-19049259 None:intergenic
CTCGTTGGCCAACTTTATTG+GGG 0.596030 2_3:+19049408 Msa0282630:CDS
AATCTGATTCTTTGGTGACA+GGG 0.596805 2_3:-19048642 None:intergenic
GCTGACAGGAGATAGCTCTC+AGG 0.597543 2_3:+19050754 Msa0282630:CDS
CTTGATGGAATTGTTGTGGA+AGG 0.598010 2_3:+19048577 Msa0282630:CDS
TCAGTCACCGACTTTGCCAA+TGG 0.599813 2_3:+19049366 Msa0282630:CDS
TTCCCCGGTCTCAGCAACAA+TGG 0.601501 2_3:-19048488 None:intergenic
CTGATCTACAAGCATCAACA+AGG 0.601748 2_3:-19050679 None:intergenic
CATCCTTGCAGTCAAGGCTG+GGG 0.607437 2_3:+19048543 Msa0282630:CDS
AGATTGCAACTGGTGTGGAA+AGG 0.615035 2_3:-19049789 None:intergenic
CAAGCAAGGTAATATTGATG+AGG 0.619230 2_3:+19051430 Msa0282630:CDS
ACAAAAGATTGCAACTGGTG+TGG 0.620678 2_3:-19049794 None:intergenic
AAAACAGGCACCATAACAAG+AGG 0.622472 2_3:+19049907 Msa0282630:CDS
AAACCCGAGACCTCGTTCAA+GGG 0.623345 2_3:+19049470 Msa0282630:CDS
AGTGGATTACTATTGAAAGG+TGG 0.625372 2_3:+19049838 Msa0282630:CDS
AAACCATTACTTAACAAGCA+AGG 0.626884 2_3:+19051416 Msa0282630:CDS
CCAAGAGCCAACCATCCCAA+AGG 0.627193 2_3:-19047965 None:intergenic
TTACTCAATGGAAATGACCA+TGG 0.628584 2_3:+19051569 Msa0282630:CDS
AAGTGTAAGAACTACAGTGT+TGG 0.629397 2_3:+19048989 Msa0282630:CDS
ATACTGTTTCAGAGACAAGT+GGG 0.630057 2_3:+19051672 Msa0282630:CDS
GTGCACTAGTGGATTATGCA+AGG 0.630355 2_3:+19050285 Msa0282630:CDS
ACAACAGTAACTGTTCGAGC+AGG 0.633676 2_3:-19047492 None:intergenic
TAGAACTTTAGGGAATCCAA+TGG 0.634958 2_3:-19047996 None:intergenic
AATACTGTTTCAGAGACAAG+TGG 0.637216 2_3:+19051671 Msa0282630:CDS
GATATACTTACAATGACATG+TGG 0.639230 2_3:+19047902 Msa0282630:CDS
GTGGAAAGGATAAGAGCACA+AGG 0.644519 2_3:-19049775 None:intergenic
AGCACAGCAGAAGCGTGGTG+AGG 0.649630 2_3:+19049283 Msa0282630:CDS
CGTGTAGCACAGCAGAAGCG+TGG 0.651398 2_3:+19049278 Msa0282630:CDS
TTGTGCTACAGAAGCAACAC+TGG 0.657128 2_3:+19047416 Msa0282630:CDS
ATCCACTCAATAAAACCACA+AGG 0.657833 2_3:-19049750 None:intergenic
CTGATGCACTGAATACAGCA+AGG 0.658656 2_3:+19047825 Msa0282630:CDS
AGAGCCAACCATCCCAAAGG+AGG 0.660926 2_3:-19047962 None:intergenic
AATGTCGTCTTTAACAAACA+TGG 0.667117 2_3:+19048453 Msa0282630:CDS
AAGTAAGCATGTTCCAACAT+CGG 0.668314 2_3:-19051291 None:intergenic
ACAAGGGCTAGATGAAACCA+TGG 0.675844 2_3:-19049733 None:intergenic
GAACTCAGATCCCTTGAACG+AGG 0.704252 2_3:-19049480 None:intergenic
AGTGTTGGCAAAAGACACAA+TGG 0.705046 2_3:+19049004 Msa0282630:CDS
CTTCTTAGTAGTGAAGAGTG+TGG 0.712204 2_3:+19051461 Msa0282630:CDS
GAATCTTGTATCATAACACA+AGG 0.715496 2_3:-19051626 None:intergenic
TGGCCAACGAGGTTCCCCAG+TGG 0.716246 2_3:-19049396 None:intergenic
TCCACTCAATAAAACCACAA+GGG 0.719890 2_3:-19049749 None:intergenic
TCTACCAAGAAACAAAACTG+TGG 0.725747 2_3:+19050632 Msa0282630:CDS
ACTGTCTAGAATTAAGACAG+TGG 0.732446 2_3:+19049876 Msa0282630:CDS
TGGAAAGGATAAGAGCACAA+GGG 0.764988 2_3:-19049774 None:intergenic
CCAATGGCTAATCTCCACTG+GGG 0.805379 2_3:+19049382 Msa0282630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAATATAATAATGTAATA+AGG - chr2_3:19048415-19048434 None:intergenic 10.0%
!!! TTTGAATATCTAAAATATCT+AGG + chr2_3:19047604-19047623 Msa0282630:intron 15.0%
!! CATTATTATATTACATTCAT+AGG + chr2_3:19048420-19048439 Msa0282630:intron 15.0%
!! CAAACATAATAATTCATTTA+AGG - chr2_3:19049206-19049225 None:intergenic 15.0%
!! TACAAAATCTTAATAATTGT+CGG + chr2_3:19049231-19049250 Msa0282630:intron 15.0%
!! ACAAAAATAAAATAAACCAA+AGG + chr2_3:19050122-19050141 Msa0282630:intron 15.0%
!! ATTAATGTTCAAAACTTATA+AGG - chr2_3:19050882-19050901 None:intergenic 15.0%
!! AACATGAATTTGTATATCTT+AGG + chr2_3:19047575-19047594 Msa0282630:intron 20.0%
!!! TACACTTAATATCAACATTT+TGG + chr2_3:19048048-19048067 Msa0282630:CDS 20.0%
!!! TATCAACATTTTGGTTTTAT+TGG + chr2_3:19048057-19048076 Msa0282630:CDS 20.0%
!! TATGTGTCAAAAATTATTTC+AGG - chr2_3:19048953-19048972 None:intergenic 20.0%
!!! GAAATAATTTTTGACACATA+TGG + chr2_3:19048953-19048972 Msa0282630:intron 20.0%
!! ACAAAATCTTAATAATTGTC+GGG + chr2_3:19049232-19049251 Msa0282630:intron 20.0%
!! ATATATACATATTAGTGCAT+GGG - chr2_3:19049543-19049562 None:intergenic 20.0%
!! AATATATACATATTAGTGCA+TGG - chr2_3:19049544-19049563 None:intergenic 20.0%
!! AATTACATATTACAACATGA+AGG + chr2_3:19049604-19049623 Msa0282630:intron 20.0%
!!! TTAATTTGTTTATTCAAGCA+GGG - chr2_3:19050042-19050061 None:intergenic 20.0%
!!! ATTAATTTGTTTATTCAAGC+AGG - chr2_3:19050043-19050062 None:intergenic 20.0%
!!! GATTTGGTTAATGAAAAATT+TGG + chr2_3:19050218-19050237 Msa0282630:intron 20.0%
!!! AGAATTTTCAAAATTTTCCA+GGG + chr2_3:19050342-19050361 Msa0282630:CDS 20.0%
!! TTTAGAAATATGTGCATTAT+TGG - chr2_3:19050834-19050853 None:intergenic 20.0%
!! TAAAAATATTACTCATCATG+TGG + chr2_3:19051496-19051515 Msa0282630:CDS 20.0%
!!! TTTTTAGTTTTTCTGTGTGA+TGG + chr2_3:19047641-19047660 Msa0282630:intron 25.0%
!! TCATAACTTACTTTGTTTCT+TGG + chr2_3:19047665-19047684 Msa0282630:intron 25.0%
!! TGGACATTTCTTTTCATTAT+TGG - chr2_3:19047882-19047901 None:intergenic 25.0%
! AAGTATATATATCCTCCTTT+GGG + chr2_3:19047950-19047969 Msa0282630:CDS 25.0%
! TTTCAGACATTTGTAGAAAA+TGG - chr2_3:19048089-19048108 None:intergenic 25.0%
! TAAAGAAAACATGTTTGCAT+TGG + chr2_3:19048131-19048150 Msa0282630:intron 25.0%
! CAATGTTAATCAAGTAATGA+AGG - chr2_3:19048368-19048387 None:intergenic 25.0%
! CTTCATTACTTGATTAACAT+TGG + chr2_3:19048366-19048385 Msa0282630:intron 25.0%
! TATATTACATTCATAGGCAA+TGG + chr2_3:19048426-19048445 Msa0282630:intron 25.0%
!! GTTGATGAAAAAATGTTAAC+AGG + chr2_3:19048610-19048629 Msa0282630:CDS 25.0%
! TATAGTTACGCATTAAAAGA+AGG + chr2_3:19048809-19048828 Msa0282630:intron 25.0%
! GTCAAAAATTATTTCAGGAT+AGG - chr2_3:19048948-19048967 None:intergenic 25.0%
!!! TTTTGCAAAGTACTATATTC+CGG + chr2_3:19049097-19049116 Msa0282630:CDS 25.0%
! TTGACAGTGAAAACAATTAT+TGG - chr2_3:19049175-19049194 None:intergenic 25.0%
!!! TCAGAATCATGATTTGTTTT+TGG + chr2_3:19049322-19049341 Msa0282630:CDS 25.0%
! TAGAAAAAATGTGATTGGAA+CGG - chr2_3:19049438-19049457 None:intergenic 25.0%
! CATTAATCAGACACATTATT+TGG - chr2_3:19049576-19049595 None:intergenic 25.0%
!!! ATAAGTGGATTACTATTGAA+AGG + chr2_3:19049835-19049854 Msa0282630:CDS 25.0%
!! TAAACCAAAGGTTTTCATAT+AGG + chr2_3:19050134-19050153 Msa0282630:intron 25.0%
! ATAACCTATATGAAAACCTT+TGG - chr2_3:19050141-19050160 None:intergenic 25.0%
! TGGTTAATGAAAAATTTGGT+AGG + chr2_3:19050222-19050241 Msa0282630:intron 25.0%
!! GAGAATTTTCAAAATTTTCC+AGG + chr2_3:19050341-19050360 Msa0282630:CDS 25.0%
!! GAATTTTCAAAATTTTCCAG+GGG + chr2_3:19050343-19050362 Msa0282630:CDS 25.0%
! ATTCAGAACTTAATTCTTGA+AGG + chr2_3:19050463-19050482 Msa0282630:intron 25.0%
! TATAGCATTGTTTAACTGAA+AGG - chr2_3:19050925-19050944 None:intergenic 25.0%
! ATTGAGAATTTCAAGAAAGA+AGG + chr2_3:19050990-19051009 Msa0282630:CDS 25.0%
! TTGAGAATTTCAAGAAAGAA+GGG + chr2_3:19050991-19051010 Msa0282630:CDS 25.0%
! GTAATATTGATGAGGAAAAA+GGG + chr2_3:19051438-19051457 Msa0282630:CDS 25.0%
!! CTTATTTCTGAGTCACAAAT+AGG + chr2_3:19047528-19047547 Msa0282630:CDS 30.0%
CATGTCATTGTAAGTATATC+TGG - chr2_3:19047902-19047921 None:intergenic 30.0%
GATATACTTACAATGACATG+TGG + chr2_3:19047902-19047921 Msa0282630:CDS 30.0%
GAAGTATATATATCCTCCTT+TGG + chr2_3:19047949-19047968 Msa0282630:CDS 30.0%
GATTCCCTAAAGTTCTATTT+CGG + chr2_3:19048002-19048021 Msa0282630:CDS 30.0%
ATTCCCTAAAGTTCTATTTC+GGG + chr2_3:19048003-19048022 Msa0282630:CDS 30.0%
! ATTAAGTGTAAGAGCTCTAA+TGG - chr2_3:19048038-19048057 None:intergenic 30.0%
!!! AACATTTTGGTTTTATTGGC+AGG + chr2_3:19048061-19048080 Msa0282630:CDS 30.0%
! GCTTTACAAGATTTTACAGA+TGG + chr2_3:19048220-19048239 Msa0282630:CDS 30.0%
! TTACAAGATTTTACAGATGG+TGG + chr2_3:19048223-19048242 Msa0282630:CDS 30.0%
AATGTCGTCTTTAACAAACA+TGG + chr2_3:19048453-19048472 Msa0282630:CDS 30.0%
GCTGGAACTATTAATATGAA+TGG + chr2_3:19048676-19048695 Msa0282630:CDS 30.0%
TGCGTAACTATATTTAGTGA+CGG - chr2_3:19048801-19048820 None:intergenic 30.0%
! TTTTTGACACATATGGTTTC+AGG + chr2_3:19048960-19048979 Msa0282630:intron 30.0%
! TTTGCAAAGTACTATATTCC+GGG + chr2_3:19049098-19049117 Msa0282630:CDS 30.0%
ATTCTGAATCATGGACATAT+CGG - chr2_3:19049309-19049328 None:intergenic 30.0%
CAAATCATGATTCTGAATCA+TGG - chr2_3:19049318-19049337 None:intergenic 30.0%
AGAAAAAATGTGATTGGAAC+GGG - chr2_3:19049437-19049456 None:intergenic 30.0%
GTCGATAGAAAAAATGTGAT+TGG - chr2_3:19049443-19049462 None:intergenic 30.0%
!!! TCACATTTTTTCTATCGACA+AGG + chr2_3:19049444-19049463 Msa0282630:CDS 30.0%
!! CAACATTACATTGGTTCAAA+TGG - chr2_3:19049510-19049529 None:intergenic 30.0%
CATTTGAACCAATGTAATGT+TGG + chr2_3:19049508-19049527 Msa0282630:intron 30.0%
TTCTGATACCAACATTACAT+TGG - chr2_3:19049519-19049538 None:intergenic 30.0%
ATGTTTATGTTGTATTGCAG+TGG + chr2_3:19049648-19049667 Msa0282630:intron 30.0%
ACAATGAAAACTTACTGTAC+TGG + chr2_3:19049971-19049990 Msa0282630:CDS 30.0%
TTGAGCAATTATAGCATACA+CGG + chr2_3:19050062-19050081 Msa0282630:intron 30.0%
! TGAAAATTCTCCACATTTTC+TGG - chr2_3:19050332-19050351 None:intergenic 30.0%
TATATAGGAAACAAGAGAGT+TGG + chr2_3:19050401-19050420 Msa0282630:CDS 30.0%
GAGAATGTCATAATTTCAGT+TGG + chr2_3:19051203-19051222 Msa0282630:CDS 30.0%
GAAAAAAGAGAATCAACCAA+AGG + chr2_3:19051359-19051378 Msa0282630:CDS 30.0%
TTTACCATATTTCCAACCTT+TGG - chr2_3:19051378-19051397 None:intergenic 30.0%
! TTGCTTGTTAAGTAATGGTT+TGG - chr2_3:19051417-19051436 None:intergenic 30.0%
AAACCATTACTTAACAAGCA+AGG + chr2_3:19051416-19051435 Msa0282630:CDS 30.0%
! TTACCTTGCTTGTTAAGTAA+TGG - chr2_3:19051422-19051441 None:intergenic 30.0%
GGTAATATTGATGAGGAAAA+AGG + chr2_3:19051437-19051456 Msa0282630:CDS 30.0%
ACAAGAAAAGATGAATCTTG+TGG + chr2_3:19051530-19051549 Msa0282630:CDS 30.0%
TCAAAGTTGAGTTTACTCAA+TGG + chr2_3:19051557-19051576 Msa0282630:CDS 30.0%
CAACAAACATAAACTTTCCA+TGG - chr2_3:19051589-19051608 None:intergenic 30.0%
! ATGTTTGTTGAAGTTCATGT+TGG + chr2_3:19051599-19051618 Msa0282630:CDS 30.0%
! TGTTTGTTGAAGTTCATGTT+GGG + chr2_3:19051600-19051619 Msa0282630:CDS 30.0%
GAATCTTGTATCATAACACA+AGG - chr2_3:19051629-19051648 None:intergenic 30.0%
!! GTTGATGATATAAGTAGCAT+AGG + chr2_3:19051734-19051753 Msa0282630:CDS 30.0%
!! AGAAGCAACTTTGAAGTGTT+AGG + chr2_3:19047387-19047406 Msa0282630:CDS 35.0%
CAGAAATAAGCAGAACATCA+TGG - chr2_3:19047518-19047537 None:intergenic 35.0%
! TTGTTTCTTGGATTCATGTG+TGG + chr2_3:19047677-19047696 Msa0282630:intron 35.0%
! ATATATATCCTCCTTTGGGA+TGG + chr2_3:19047954-19047973 Msa0282630:CDS 35.0%
! TAGAACTTTAGGGAATCCAA+TGG - chr2_3:19047999-19048018 None:intergenic 35.0%
TAGCCCGAAATAGAACTTTA+GGG - chr2_3:19048009-19048028 None:intergenic 35.0%
ATAGCCCGAAATAGAACTTT+AGG - chr2_3:19048010-19048029 None:intergenic 35.0%
TCATCATATGTTGCAGTATG+TGG + chr2_3:19048190-19048209 Msa0282630:intron 35.0%
TGAGACAAAAGCAACTCATA+AGG + chr2_3:19048282-19048301 Msa0282630:CDS 35.0%
AGAAAGAAAACATAGCGACA+AGG - chr2_3:19048334-19048353 None:intergenic 35.0%
! AATCTGATTCTTTGGTGACA+GGG - chr2_3:19048645-19048664 None:intergenic 35.0%
GACAAGTGAATCTGATTCTT+TGG - chr2_3:19048653-19048672 None:intergenic 35.0%
AAGAATCAGATTCACTTGTC+TGG + chr2_3:19048653-19048672 Msa0282630:CDS 35.0%
AGAATCAGATTCACTTGTCT+GGG + chr2_3:19048654-19048673 Msa0282630:CDS 35.0%
GCGTAACTATATTTAGTGAC+GGG - chr2_3:19048800-19048819 None:intergenic 35.0%
AAGTGTAAGAACTACAGTGT+TGG + chr2_3:19048989-19049008 Msa0282630:CDS 35.0%
TTCAACAAGTCTTGACATTC+GGG - chr2_3:19049033-19049052 None:intergenic 35.0%
CTTCAACAAGTCTTGACATT+CGG - chr2_3:19049034-19049053 None:intergenic 35.0%
TGATGTACATGATACATACC+CGG - chr2_3:19049119-19049138 None:intergenic 35.0%
CATGTACATCAACTTTCTTG+TGG + chr2_3:19049128-19049147 Msa0282630:intron 35.0%
TGCATTAAGTGTTCCTGATA+TGG + chr2_3:19049708-19049727 Msa0282630:CDS 35.0%
TCCACTCAATAAAACCACAA+GGG - chr2_3:19049752-19049771 None:intergenic 35.0%
ATCCACTCAATAAAACCACA+AGG - chr2_3:19049753-19049772 None:intergenic 35.0%
!! AGTGGATTACTATTGAAAGG+TGG + chr2_3:19049838-19049857 Msa0282630:CDS 35.0%
! ACTGTCTAGAATTAAGACAG+TGG + chr2_3:19049876-19049895 Msa0282630:CDS 35.0%
! ACAGTGGCTTTTGATAAAAC+AGG + chr2_3:19049892-19049911 Msa0282630:CDS 35.0%
! TGAAAACTTACTGTACTGGT+AGG + chr2_3:19049975-19049994 Msa0282630:intron 35.0%
CATACACGGTTATCATGAAA+GGG + chr2_3:19050076-19050095 Msa0282630:intron 35.0%
AGCTTACGGAAATTCTTAGA+AGG + chr2_3:19050188-19050207 Msa0282630:intron 35.0%
CTTAGAAGGCTAACTTGATT+TGG + chr2_3:19050202-19050221 Msa0282630:intron 35.0%
! TTTCAAAATTTTCCAGGGGA+AGG + chr2_3:19050347-19050366 Msa0282630:CDS 35.0%
!!! GGAATTTTTGGTACAATCGA+TGG + chr2_3:19050368-19050387 Msa0282630:CDS 35.0%
!! TTTTTGGTACAATCGATGGT+AGG + chr2_3:19050372-19050391 Msa0282630:CDS 35.0%
! TTTTGGTACAATCGATGGTA+GGG + chr2_3:19050373-19050392 Msa0282630:CDS 35.0%
GATGGTAGGGATATCTATAT+AGG + chr2_3:19050386-19050405 Msa0282630:CDS 35.0%
GTCAGAGCTATATGTAAAAG+AGG + chr2_3:19050425-19050444 Msa0282630:CDS 35.0%
GTTTCTTGGTAGAAATCTCA+TGG - chr2_3:19050625-19050644 None:intergenic 35.0%
TCTACCAAGAAACAAAACTG+TGG + chr2_3:19050632-19050651 Msa0282630:CDS 35.0%
!!! TTCTCCACAGTTTTGTTTCT+TGG - chr2_3:19050639-19050658 None:intergenic 35.0%
ATGGAAGAGCTAAAGTCATT+AGG + chr2_3:19050716-19050735 Msa0282630:CDS 35.0%
TGCTATGTATGTTCAAAGTC+AGG + chr2_3:19050778-19050797 Msa0282630:CDS 35.0%
! ATGAGTTTTGCCTTTTCATG+TGG - chr2_3:19050972-19050991 None:intergenic 35.0%
ATTTATGCCATCTCCTATCA+TGG - chr2_3:19051024-19051043 None:intergenic 35.0%
TTGCAGGTTATCCATTAGTT+TGG + chr2_3:19051255-19051274 Msa0282630:CDS 35.0%
AAGTAAGCATGTTCCAACAT+CGG - chr2_3:19051294-19051313 None:intergenic 35.0%
AAAGAGAATCAACCAAAGGT+TGG + chr2_3:19051363-19051382 Msa0282630:CDS 35.0%
TCAACCAAAGGTTGGAAATA+TGG + chr2_3:19051371-19051390 Msa0282630:CDS 35.0%
CAAGCAAGGTAATATTGATG+AGG + chr2_3:19051430-19051449 Msa0282630:CDS 35.0%
TTACTCAATGGAAATGACCA+TGG + chr2_3:19051569-19051588 Msa0282630:CDS 35.0%
! AGATTCTAGCATTGCTACTT+TGG + chr2_3:19051643-19051662 Msa0282630:CDS 35.0%
AATACTGTTTCAGAGACAAG+TGG + chr2_3:19051671-19051690 Msa0282630:CDS 35.0%
ATACTGTTTCAGAGACAAGT+GGG + chr2_3:19051672-19051691 Msa0282630:CDS 35.0%
!! AGAATTCTGAAGCCTCTTCA+TGG + chr2_3:19047444-19047463 Msa0282630:CDS 40.0%
!!! GAAGCTAGTTTTAGACCACA+AGG + chr2_3:19047851-19047870 Msa0282630:CDS 40.0%
! TCATTATTGGTCTCTCCTTG+TGG - chr2_3:19047869-19047888 None:intergenic 40.0%
TTCTGTTCTCTATTGCTCAG+TGG + chr2_3:19048257-19048276 Msa0282630:CDS 40.0%
AACAAACATGGCTCCTCAAA+TGG + chr2_3:19048465-19048484 Msa0282630:CDS 40.0%
TCCTCTTGATGGAATTGTTG+TGG + chr2_3:19048573-19048592 Msa0282630:CDS 40.0%
TCCACAACAATTCCATCAAG+AGG - chr2_3:19048577-19048596 None:intergenic 40.0%
CTTGATGGAATTGTTGTGGA+AGG + chr2_3:19048577-19048596 Msa0282630:CDS 40.0%
! GAATCTGATTCTTTGGTGAC+AGG - chr2_3:19048646-19048665 None:intergenic 40.0%
AGAGAGAGAGAGAGTAAAAG+AGG - chr2_3:19048889-19048908 None:intergenic 40.0%
!! AGTGTTGGCAAAAGACACAA+TGG + chr2_3:19049004-19049023 Msa0282630:CDS 40.0%
CATCAACTTTCTTGTGGAAG+TGG + chr2_3:19049134-19049153 Msa0282630:intron 40.0%
! AGATTAGCCATTGGCAAAGT+CGG - chr2_3:19049376-19049395 None:intergenic 40.0%
! TGGAAAGGATAAGAGCACAA+GGG - chr2_3:19049777-19049796 None:intergenic 40.0%
ACAAAAGATTGCAACTGGTG+TGG - chr2_3:19049797-19049816 None:intergenic 40.0%
AGAGCACAAAAGATTGCAAC+TGG - chr2_3:19049802-19049821 None:intergenic 40.0%
CTCACAAAAGCTGCAATAAG+TGG + chr2_3:19049820-19049839 Msa0282630:CDS 40.0%
AAAACAGGCACCATAACAAG+AGG + chr2_3:19049907-19049926 Msa0282630:CDS 40.0%
TGAGAACTCTCCTCTTGTTA+TGG - chr2_3:19049920-19049939 None:intergenic 40.0%
GCATACACGGTTATCATGAA+AGG + chr2_3:19050075-19050094 Msa0282630:intron 40.0%
AACCTATCCTAGAGAGCTTA+CGG + chr2_3:19050174-19050193 Msa0282630:intron 40.0%
AGAATTTCCGTAAGCTCTCT+AGG - chr2_3:19050184-19050203 None:intergenic 40.0%
AAATCAAGTCATCCAGTTGC+AGG + chr2_3:19050263-19050282 Msa0282630:CDS 40.0%
AAGGTTGCACTCTATCAAAC+CGG + chr2_3:19050304-19050323 Msa0282630:CDS 40.0%
!! TTCTCCACATTTTCTGGTAC+CGG - chr2_3:19050326-19050345 None:intergenic 40.0%
! TTTCCAGGGGAAGGAATTTT+TGG + chr2_3:19050356-19050375 Msa0282630:CDS 40.0%
AACTGTGGAGAAACTCTAGT+TGG + chr2_3:19050647-19050666 Msa0282630:CDS 40.0%
CTGATCTACAAGCATCAACA+AGG - chr2_3:19050682-19050701 None:intergenic 40.0%
CTTGTTGATGCTTGTAGATC+AGG + chr2_3:19050680-19050699 Msa0282630:CDS 40.0%
TTGTAGATCAGGTGCTTTAG+AGG + chr2_3:19050691-19050710 Msa0282630:CDS 40.0%
! CTTTTCATGTGGTAGAAGCT+CGG - chr2_3:19050961-19050980 None:intergenic 40.0%
AGCAGACATAGGCATATCAA+TGG + chr2_3:19051064-19051083 Msa0282630:CDS 40.0%
GCAGACATAGGCATATCAAT+GGG + chr2_3:19051065-19051084 Msa0282630:CDS 40.0%
CAAATCTGCCATACTTGCAT+TGG + chr2_3:19051229-19051248 Msa0282630:CDS 40.0%
TGCAATTGCCAATGCAAGTA+TGG - chr2_3:19051240-19051259 None:intergenic 40.0%
! ATACTTGCATTGGCAATTGC+AGG + chr2_3:19051239-19051258 Msa0282630:CDS 40.0%
AACACAGCTAGCCAAACTAA+TGG - chr2_3:19051269-19051288 None:intergenic 40.0%
CTTCTTAGTAGTGAAGAGTG+TGG + chr2_3:19051461-19051480 Msa0282630:CDS 40.0%
TTGTGCTACAGAAGCAACAC+TGG + chr2_3:19047416-19047435 Msa0282630:CDS 45.0%
! ACAGCTTTGACTCCATGAAG+AGG - chr2_3:19047459-19047478 None:intergenic 45.0%
TCATGGAGTCAAAGCTGTCT+CGG + chr2_3:19047461-19047480 Msa0282630:CDS 45.0%
ACAACAGTAACTGTTCGAGC+AGG - chr2_3:19047495-19047514 None:intergenic 45.0%
CTGATGCACTGAATACAGCA+AGG + chr2_3:19047825-19047844 Msa0282630:CDS 45.0%
!! ATATCCTCCTTTGGGATGGT+TGG + chr2_3:19047958-19047977 Msa0282630:CDS 45.0%
TCAGCAACAATGGCCATTTG+AGG - chr2_3:19048481-19048500 None:intergenic 45.0%
ATTGACATCAACACGTTCCC+CGG - chr2_3:19048506-19048525 None:intergenic 45.0%
!! CTACACGAATACTGGCTTTG+AGG - chr2_3:19049265-19049284 None:intergenic 45.0%
ACCTCGTTGGCCAACTTTAT+TGG + chr2_3:19049406-19049425 Msa0282630:CDS 45.0%
CCTCGTTGGCCAACTTTATT+GGG + chr2_3:19049407-19049426 Msa0282630:CDS 45.0%
CTCGTTGGCCAACTTTATTG+GGG + chr2_3:19049408-19049427 Msa0282630:CDS 45.0%
GATTTCAGCTAGCATTGCAG+TGG + chr2_3:19049678-19049697 Msa0282630:CDS 45.0%
TCAGGAACACTTAATGCAGC+TGG - chr2_3:19049706-19049725 None:intergenic 45.0%
TGAAACCATGGCTCCATATC+AGG - chr2_3:19049724-19049743 None:intergenic 45.0%
ACAAGGGCTAGATGAAACCA+TGG - chr2_3:19049736-19049755 None:intergenic 45.0%
ATGGTTTCATCTAGCCCTTG+TGG + chr2_3:19049735-19049754 Msa0282630:CDS 45.0%
!!! GCCCTTGTGGTTTTATTGAG+TGG + chr2_3:19049748-19049767 Msa0282630:CDS 45.0%
! GTGGAAAGGATAAGAGCACA+AGG - chr2_3:19049778-19049797 None:intergenic 45.0%
AGATTGCAACTGGTGTGGAA+AGG - chr2_3:19049792-19049811 None:intergenic 45.0%
!! TTCCGTAAGCTCTCTAGGAT+AGG - chr2_3:19050179-19050198 None:intergenic 45.0%
!! GTGCACTAGTGGATTATGCA+AGG + chr2_3:19050285-19050304 Msa0282630:CDS 45.0%
CAAACCGGTACCAGAAAATG+TGG + chr2_3:19050319-19050338 Msa0282630:CDS 45.0%
GTACCAAAAATTCCTTCCCC+TGG - chr2_3:19050362-19050381 None:intergenic 45.0%
!! ATCAGGTGCTTTAGAGGCAA+TGG + chr2_3:19050697-19050716 Msa0282630:CDS 45.0%
CGAGCTTCTACCACATGAAA+AGG + chr2_3:19050959-19050978 Msa0282630:CDS 45.0%
CCATCTCCTATCATGGCTAT+TGG - chr2_3:19051017-19051036 None:intergenic 45.0%
CCAATAGCCATGATAGGAGA+TGG + chr2_3:19051014-19051033 Msa0282630:CDS 45.0%
ATGTCTGCTGTAGCTAATGC+AGG - chr2_3:19051053-19051072 None:intergenic 45.0%
GCATTAGCTACAGCAGACAT+AGG + chr2_3:19051053-19051072 Msa0282630:CDS 45.0%
GGCATATCAATGGGAATCTC+AGG + chr2_3:19051074-19051093 Msa0282630:CDS 45.0%
CTTGCTAAACGAATCGCTTC+AGG - chr2_3:19051161-19051180 None:intergenic 45.0%
CTAGCTGTGTTAACCGATGT+TGG + chr2_3:19051278-19051297 Msa0282630:CDS 45.0%
!! GCTCTTGGTTCTGTTGCCAT+TGG + chr2_3:19047980-19047999 Msa0282630:CDS 50.0%
ATGGCCATTGTTGCTGAGAC+CGG + chr2_3:19048484-19048503 Msa0282630:CDS 50.0%
GAACACCATCCTTGCAGTCA+AGG + chr2_3:19048537-19048556 Msa0282630:CDS 50.0%
GGGGATGCTATTCCTCTTGA+TGG + chr2_3:19048562-19048581 Msa0282630:CDS 50.0%
TCAGATTCACTTGTCTGGGC+TGG + chr2_3:19048658-19048677 Msa0282630:CDS 50.0%
!! CACGAATACTGGCTTTGAGG+TGG - chr2_3:19049262-19049281 None:intergenic 50.0%
CTGCTGTGCTACACGAATAC+TGG - chr2_3:19049273-19049292 None:intergenic 50.0%
!! TCAGTCACCGACTTTGCCAA+TGG + chr2_3:19049366-19049385 Msa0282630:CDS 50.0%
TGCCAATGGCTAATCTCCAC+TGG + chr2_3:19049380-19049399 Msa0282630:CDS 50.0%
GCCAATGGCTAATCTCCACT+GGG + chr2_3:19049381-19049400 Msa0282630:CDS 50.0%
CCAATGGCTAATCTCCACTG+GGG + chr2_3:19049382-19049401 Msa0282630:CDS 50.0%
CCCAATAAAGTTGGCCAACG+AGG - chr2_3:19049410-19049429 None:intergenic 50.0%
ACGGGAGACCCCAATAAAGT+TGG - chr2_3:19049419-19049438 None:intergenic 50.0%
TAAACCCGAGACCTCGTTCA+AGG + chr2_3:19049469-19049488 Msa0282630:CDS 50.0%
AAACCCGAGACCTCGTTCAA+GGG + chr2_3:19049470-19049489 Msa0282630:CDS 50.0%
AGATCCCTTGAACGAGGTCT+CGG - chr2_3:19049477-19049496 None:intergenic 50.0%
GAACTCAGATCCCTTGAACG+AGG - chr2_3:19049483-19049502 None:intergenic 50.0%
GTGTTCCTGATATGGAGCCA+TGG + chr2_3:19049716-19049735 Msa0282630:CDS 50.0%
GTCAGATCAGTCATGCTGAC+AGG + chr2_3:19050740-19050759 Msa0282630:CDS 50.0%
GAAGGGCCAATAGCCATGAT+AGG + chr2_3:19051008-19051027 Msa0282630:CDS 50.0%
AGAGCCAACCATCCCAAAGG+AGG - chr2_3:19047965-19047984 None:intergenic 55.0%
CCAAGAGCCAACCATCCCAA+AGG - chr2_3:19047968-19047987 None:intergenic 55.0%
!! CCTTTGGGATGGTTGGCTCT+TGG + chr2_3:19047965-19047984 Msa0282630:CDS 55.0%
TGGCCATTGTTGCTGAGACC+GGG + chr2_3:19048485-19048504 Msa0282630:CDS 55.0%
TTCCCCGGTCTCAGCAACAA+TGG - chr2_3:19048491-19048510 None:intergenic 55.0%
ACCATCCTTGCAGTCAAGGC+TGG + chr2_3:19048541-19048560 Msa0282630:CDS 55.0%
CCATCCTTGCAGTCAAGGCT+GGG + chr2_3:19048542-19048561 Msa0282630:CDS 55.0%
CATCCTTGCAGTCAAGGCTG+GGG + chr2_3:19048543-19048562 Msa0282630:CDS 55.0%
! CCCCAGTGGAGATTAGCCAT+TGG - chr2_3:19049385-19049404 None:intergenic 55.0%
GATCCCTTGAACGAGGTCTC+GGG - chr2_3:19049476-19049495 None:intergenic 55.0%
TCCAGTTGCAGGTGCACTAG+TGG + chr2_3:19050274-19050293 Msa0282630:CDS 55.0%
TCCACTAGTGCACCTGCAAC+TGG - chr2_3:19050278-19050297 None:intergenic 55.0%
GCTGACAGGAGATAGCTCTC+AGG + chr2_3:19050754-19050773 Msa0282630:CDS 55.0%
GGCCATTGTTGCTGAGACCG+GGG + chr2_3:19048486-19048505 Msa0282630:CDS 60.0%
CCCAGCCTTGACTGCAAGGA+TGG - chr2_3:19048545-19048564 None:intergenic 60.0%
CATCCCCAGCCTTGACTGCA+AGG - chr2_3:19048549-19048568 None:intergenic 60.0%
CGTGTAGCACAGCAGAAGCG+TGG + chr2_3:19049278-19049297 Msa0282630:CDS 60.0%
! AGCACAGCAGAAGCGTGGTG+AGG + chr2_3:19049283-19049302 Msa0282630:CDS 60.0%
TCTCCACTGGGGAACCTCGT+TGG + chr2_3:19049393-19049412 Msa0282630:CDS 60.0%
TGGCCAACGAGGTTCCCCAG+TGG - chr2_3:19049399-19049418 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 19047369 19051787 19047369 ID=Msa0282630;Name=Msa0282630
chr2_3 mRNA 19047369 19051787 19047369 ID=Msa0282630-mRNA-1;Parent=Msa0282630;Name=Msa0282630-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.33|0.2|1|1|1|10|0|921
chr2_3 exon 19047369 19047549 19047369 ID=Msa0282630-mRNA-1:exon:7660;Parent=Msa0282630-mRNA-1
chr2_3 exon 19047825 19048082 19047825 ID=Msa0282630-mRNA-1:exon:7661;Parent=Msa0282630-mRNA-1
chr2_3 exon 19048206 19048303 19048206 ID=Msa0282630-mRNA-1:exon:7662;Parent=Msa0282630-mRNA-1
chr2_3 exon 19048442 19048697 19048442 ID=Msa0282630-mRNA-1:exon:7663;Parent=Msa0282630-mRNA-1
chr2_3 exon 19048982 19049119 19048982 ID=Msa0282630-mRNA-1:exon:7664;Parent=Msa0282630-mRNA-1
chr2_3 exon 19049258 19049503 19049258 ID=Msa0282630-mRNA-1:exon:7665;Parent=Msa0282630-mRNA-1
chr2_3 exon 19049668 19049992 19049668 ID=Msa0282630-mRNA-1:exon:7666;Parent=Msa0282630-mRNA-1
chr2_3 exon 19050244 19050446 19050244 ID=Msa0282630-mRNA-1:exon:7667;Parent=Msa0282630-mRNA-1
chr2_3 exon 19050597 19050799 19050597 ID=Msa0282630-mRNA-1:exon:7668;Parent=Msa0282630-mRNA-1
chr2_3 exon 19050930 19051787 19050930 ID=Msa0282630-mRNA-1:exon:7669;Parent=Msa0282630-mRNA-1
chr2_3 CDS 19047369 19047549 19047369 ID=Msa0282630-mRNA-1:cds;Parent=Msa0282630-mRNA-1
chr2_3 CDS 19047825 19048082 19047825 ID=Msa0282630-mRNA-1:cds;Parent=Msa0282630-mRNA-1
chr2_3 CDS 19048206 19048303 19048206 ID=Msa0282630-mRNA-1:cds;Parent=Msa0282630-mRNA-1
chr2_3 CDS 19048442 19048697 19048442 ID=Msa0282630-mRNA-1:cds;Parent=Msa0282630-mRNA-1
chr2_3 CDS 19048982 19049119 19048982 ID=Msa0282630-mRNA-1:cds;Parent=Msa0282630-mRNA-1
chr2_3 CDS 19049258 19049503 19049258 ID=Msa0282630-mRNA-1:cds;Parent=Msa0282630-mRNA-1
chr2_3 CDS 19049668 19049992 19049668 ID=Msa0282630-mRNA-1:cds;Parent=Msa0282630-mRNA-1
chr2_3 CDS 19050244 19050446 19050244 ID=Msa0282630-mRNA-1:cds;Parent=Msa0282630-mRNA-1
chr2_3 CDS 19050597 19050799 19050597 ID=Msa0282630-mRNA-1:cds;Parent=Msa0282630-mRNA-1
chr2_3 CDS 19050930 19051787 19050930 ID=Msa0282630-mRNA-1:cds;Parent=Msa0282630-mRNA-1
Gene Sequence

>Msa0282630

ATGGTTGAGAATATAAAGAGAAGCAACTTTGAAGTGTTAGGAATATGTTGTGCTACAGAAGCAACACTGGTTGAAAGAATTCTGAAGCCTCTTCATGGAGTCAAAGCTGTCTCGGTGATTGTTCCTGCTCGAACAGTTACTGTTGTCCATGATGTTCTGCTTATTTCTGAGTCACAAATAGCTGATGCACTGAATACAGCAAGGCTTGAAGCTAGTTTTAGACCACAAGGAGAGACCAATAATGAAAAGAAATGTCCAGATATACTTACAATGACATGTGGATTGTTACTTGCACTTTCATTTTTGAAGTATATATATCCTCCTTTGGGATGGTTGGCTCTTGGTTCTGTTGCCATTGGATTCCCTAAAGTTCTATTTCGGGCTATAGCTTCCATTAGAGCTCTTACACTTAATATCAACATTTTGGTTTTATTGGCAGTATGTGGTACTGCTGCTTTACAAGATTTTACAGATGGTGGAGTCATCATCTTTCTGTTCTCTATTGCTCAGTGGCTTGAGACAAAAGCAACTCATAAGGCAATGGTTGCAATGTCGTCTTTAACAAACATGGCTCCTCAAATGGCCATTGTTGCTGAGACCGGGGAACGTGTTGATGTCAATGATGTTAAGATGAACACCATCCTTGCAGTCAAGGCTGGGGATGCTATTCCTCTTGATGGAATTGTTGTGGAAGGAAAGTGTGAAGTTGATGAAAAAATGTTAACAGGAGAATCATTCCCTGTCACCAAAGAATCAGATTCACTTGTCTGGGCTGGAACTATTAATATGAATGGATATATAAGTGTAAGAACTACAGTGTTGGCAAAAGACACAATGGTCGCCCGAATGTCAAGACTTGTTGAAGAAGCTTCTAGCAGAAAATCACAAGCACAAAGATTCATAGATAATTTTGCAAAGTACTATATTCCGGTCCACCTCAAAGCCAGTATTCGTGTAGCACAGCAGAAGCGTGGTGAGGCCGATATGTCCATGATTCAGAATCATGATTTGTTTTTGGTAATCATGTTGTTAGTGCGAATCAGTCACCGACTTTGCCAATGGCTAATCTCCACTGGGGAACCTCGTTGGCCAACTTTATTGGGGTCTCCCGTTCCAATCACATTTTTTCTATCGACAAGGCTTAAACCCGAGACCTCGTTCAAGGGATCTGAGTTCATGGTTGTGTTGATTTCAGCTAGCATTGCAGTGGTTCCAGCTGCATTAAGTGTTCCTGATATGGAGCCATGGTTTCATCTAGCCCTTGTGGTTTTATTGAGTGGATGCCCTTGTGCTCTTATCCTTTCCACACCAGTTGCAATCTTTTGTGCTCTCACAAAAGCTGCAATAAGTGGATTACTATTGAAAGGTGGAGATTATCTTGAAACACTGTCTAGAATTAAGACAGTGGCTTTTGATAAAACAGGCACCATAACAAGAGGAGAGTTCTCAGTAACAGATTTTAGTGCTACAGATGACGTTAACAATGAAAACTTACTGTACTGGATTTCGAGTATTGAGAGTAAATCAAGTCATCCAGTTGCAGGTGCACTAGTGGATTATGCAAGGTTGCACTCTATCAAACCGGTACCAGAAAATGTGGAGAATTTTCAAAATTTTCCAGGGGAAGGAATTTTTGGTACAATCGATGGTAGGGATATCTATATAGGAAACAAGAGAGTTGGTGTCAGAGCTATATGTAAAAGAGATGATTGCAAAGTGAAAGTTCATAGCCATGAGATTTCTACCAAGAAACAAAACTGTGGAGAAACTCTAGTTGGAGTTTTCAGCCTTGTTGATGCTTGTAGATCAGGTGCTTTAGAGGCAATGGAAGAGCTAAAGTCATTAGGAGTCAGATCAGTCATGCTGACAGGAGATAGCTCTCAGGTTGCTATGTATGTTCAAAGTCAGTTAAACAATGCTATAGACATAGTTCATGCCGAGCTTCTACCACATGAAAAGGCAAAACTCATTGAGAATTTCAAGAAAGAAGGGCCAATAGCCATGATAGGAGATGGCATAAATGATGCTCCTGCATTAGCTACAGCAGACATAGGCATATCAATGGGAATCTCAGGTTCAGCTCTTGCAAATGAGACAAGTCACGCGATTCTCATGTCAAACGATATACGAAAAGTACCTGAAGCGATTCGTTTAGCAAGAAAAACAACTAGAAAACTCATTGAGAATGTCATAATTTCAGTTGGATTCAAATCTGCCATACTTGCATTGGCAATTGCAGGTTATCCATTAGTTTGGCTAGCTGTGTTAACCGATGTTGGAACATGCTTACTTGTGATTCTCAATAGCATGTTGATTTTACAAGAGAATCACAAATATGAAAAAAGAGAATCAACCAAAGGTTGGAAATATGGTAAATGTTTTGAAGATAAGACCAAACCATTACTTAACAAGCAAGGTAATATTGATGAGGAAAAAGGGCTTCTTAGTAGTGAAGAGTGTGGTAAAGATTGTTGTAAAAATATTACTCATCATGTGGAAACTTCAAACACAAGAAAAGATGAATCTTGTGGAATTTCAAAGTTGAGTTTACTCAATGGAAATGACCATGGAAAGTTTATGTTTGTTGAAGTTCATGTTGGGAAGCCTTGTGTTATGATACAAGATTCTAGCATTGCTACTTTGGAATCTAATACTGTTTCAGAGACAAGTGGGATTACTAAGTGCTGCAAGAATAGATGCTGTAATGATAGTGTTGATGATATAAGTAGCATAGGTGAACAGTCAGAAATTATTATTATTCAGTGA
Protein sequence

>Msa0282630

MVENIKRSNFEVLGICCATEATLVERILKPLHGVKAVSVIVPARTVTVVHDVLLISESQIADALNTARLEASFRPQGETNNEKKCPDILTMTCGLLLALSFLKYIYPPLGWLALGSVAIGFPKVLFRAIASIRALTLNINILVLLAVCGTAALQDFTDGGVIIFLFSIAQWLETKATHKAMVAMSSLTNMAPQMAIVAETGERVDVNDVKMNTILAVKAGDAIPLDGIVVEGKCEVDEKMLTGESFPVTKESDSLVWAGTINMNGYISVRTTVLAKDTMVARMSRLVEEASSRKSQAQRFIDNFAKYYIPVHLKASIRVAQQKRGEADMSMIQNHDLFLVIMLLVRISHRLCQWLISTGEPRWPTLLGSPVPITFFLSTRLKPETSFKGSEFMVVLISASIAVVPAALSVPDMEPWFHLALVVLLSGCPCALILSTPVAIFCALTKAAISGLLLKGGDYLETLSRIKTVAFDKTGTITRGEFSVTDFSATDDVNNENLLYWISSIESKSSHPVAGALVDYARLHSIKPVPENVENFQNFPGEGIFGTIDGRDIYIGNKRVGVRAICKRDDCKVKVHSHEISTKKQNCGETLVGVFSLVDACRSGALEAMEELKSLGVRSVMLTGDSSQVAMYVQSQLNNAIDIVHAELLPHEKAKLIENFKKEGPIAMIGDGINDAPALATADIGISMGISGSALANETSHAILMSNDIRKVPEAIRLARKTTRKLIENVIISVGFKSAILALAIAGYPLVWLAVLTDVGTCLLVILNSMLILQENHKYEKRESTKGWKYGKCFEDKTKPLLNKQGNIDEEKGLLSSEECGKDCCKNITHHVETSNTRKDESCGISKLSLLNGNDHGKFMFVEVHVGKPCVMIQDSSIATLESNTVSETSGITKCCKNRCCNDSVDDISSIGEQSEIIIIQ*