Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284120 | XP_003595226.3 | 91.979 | 187 | 15 | 0 | 1 | 187 | 42 | 228 | 1.45e-95 | 287 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284120 | G7IQ64 | 91.979 | 187 | 15 | 0 | 1 | 187 | 42 | 228 | 6.91e-96 | 287 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0214640 | Msa0284120 | 0.808157 | 3.555053e-50 | -8.615850e-47 |
| Msa0284120 | Msa0532790 | 0.800384 | 1.478135e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284120 | MtrunA17_Chr2g0299631 | 91.979 | 187 | 15 | 0 | 1 | 187 | 42 | 228 | 1.33e-99 | 287 |
| Msa0284120 | MtrunA17_Chr8g0342571 | 62.222 | 90 | 30 | 2 | 96 | 185 | 1 | 86 | 3.51e-28 | 101 |
| Msa0284120 | MtrunA17_Chr8g0342571 | 50.575 | 87 | 42 | 1 | 3 | 89 | 7 | 92 | 1.48e-21 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284120 | AT5G57000.1 | 46.053 | 152 | 62 | 4 | 36 | 185 | 9 | 142 | 6.86e-29 | 106 |
| Msa0284120 | AT5G57000.1 | 47.059 | 68 | 33 | 1 | 16 | 80 | 72 | 139 | 6.22e-13 | 64.7 |
| Msa0284120 | AT1G72690.1 | 58.442 | 77 | 32 | 0 | 109 | 185 | 7 | 83 | 8.06e-25 | 92.8 |
| Msa0284120 | AT1G72690.1 | 54.545 | 66 | 29 | 1 | 11 | 75 | 10 | 75 | 6.18e-16 | 70.1 |
| Msa0284120 | AT5G57000.2 | 61.644 | 73 | 26 | 1 | 115 | 185 | 23 | 95 | 3.58e-19 | 79.7 |
| Msa0284120 | AT5G57000.2 | 47.059 | 68 | 33 | 1 | 16 | 80 | 25 | 92 | 4.54e-13 | 63.9 |
| Msa0284120 | AT1G17490.1 | 47.143 | 70 | 28 | 1 | 116 | 185 | 13 | 73 | 7.03e-13 | 61.6 |
Find 56 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGGTCATCTTTCTTTCTT+TGG | 0.148390 | 2_3:+21960140 | None:intergenic |
| ATGTATATGTGCAATGTTAA+AGG | 0.269365 | 2_3:+21959981 | None:intergenic |
| TTGTATCTTCAGGTTGTAAA+AGG | 0.286599 | 2_3:-21959794 | Msa0284120:three_prime_UTR |
| TTTGCTCTTTCAAAGACATT+TGG | 0.312059 | 2_3:+21960197 | None:intergenic |
| GGTCCCTTAACTTCACTGAT+AGG | 0.314513 | 2_3:+21960218 | None:intergenic |
| TCAGTCTTGGTTGTATCTTC+AGG | 0.317889 | 2_3:-21959804 | Msa0284120:intron |
| CTTGGATTATAGTAGTGTTT+AGG | 0.320030 | 2_3:-21960029 | Msa0284120:three_prime_UTR |
| CTTTGCTCTTTCAACCAAAT+CGG | 0.326539 | 2_3:+21961436 | None:intergenic |
| TTCGCTCGTTCAAACACATT+TGG | 0.328078 | 2_3:+21961299 | None:intergenic |
| TACCCCTATCAGTGAAGTTA+AGG | 0.362095 | 2_3:-21960222 | Msa0284120:CDS |
| CTTTCTTTGGATGTATTGCT+TGG | 0.362899 | 2_3:+21960153 | None:intergenic |
| GTAAGATAAGAAAACACATT+AGG | 0.377037 | 2_3:+21959762 | None:intergenic |
| GTGTTGAATTCAGTTTGATA+TGG | 0.403327 | 2_3:-21960096 | Msa0284120:three_prime_UTR |
| TCCATTGTAAGGAAGGAAAA+TGG | 0.406328 | 2_3:+21960122 | None:intergenic |
| TTCAACACCATTCCATTGTA+AGG | 0.406456 | 2_3:+21960111 | None:intergenic |
| AGAAGCAAGAGGACCCGATT+TGG | 0.407367 | 2_3:-21961450 | Msa0284120:CDS |
| AAAATCTCTGGCTCTTCATC+AGG | 0.417787 | 2_3:-21961066 | Msa0284120:intron |
| GTCCCTTAACTTCACTGATA+GGG | 0.420855 | 2_3:+21960219 | None:intergenic |
| TTTGCTCTTTCAACCAAATC+GGG | 0.420931 | 2_3:+21961437 | None:intergenic |
| ATAGTAAACATGCTTGTACT+TGG | 0.429034 | 2_3:-21960047 | Msa0284120:three_prime_UTR |
| TGACTTATCATGATGTATGA+TGG | 0.462433 | 2_3:+21960301 | None:intergenic |
| GAGTTTCTTTATCATGATGA+TGG | 0.477232 | 2_3:+21960273 | None:intergenic |
| AAATAGGGATGCAGATCAAA+TGG | 0.482346 | 2_3:-21961109 | Msa0284120:intron |
| AAAACAACAAATTCTCCATC+AGG | 0.493774 | 2_3:-21962233 | Msa0284120:intron |
| AAGAGCAAAGGAAGAATTTG+AGG | 0.495987 | 2_3:-21961423 | Msa0284120:CDS |
| AGTCTTCAAGTCATCATCAC+AGG | 0.497551 | 2_3:-21961382 | Msa0284120:CDS |
| TTTCCTTCCTTACAATGGAA+TGG | 0.508537 | 2_3:-21960118 | Msa0284120:three_prime_UTR |
| AGGCTTCAACTCATGACATA+AGG | 0.510644 | 2_3:-21961232 | Msa0284120:intron |
| ACCCCTATCAGTGAAGTTAA+GGG | 0.516379 | 2_3:-21960221 | Msa0284120:CDS |
| GATGTTATTCACTTCGGCAA+TGG | 0.525722 | 2_3:-21959872 | Msa0284120:three_prime_UTR |
| CATAGACGAGAATACCTCAT+TGG | 0.525737 | 2_3:-21961336 | Msa0284120:CDS |
| CATCATGATAAAGAAACTCA+TGG | 0.530204 | 2_3:-21960269 | Msa0284120:CDS |
| ACACCATTCCATTGTAAGGA+AGG | 0.534654 | 2_3:+21960115 | None:intergenic |
| GGAGAAGAACAAGAAGAGAC+AGG | 0.540708 | 2_3:+21962340 | None:intergenic |
| CAACATGATGTTATTCACTT+CGG | 0.541398 | 2_3:-21959878 | Msa0284120:three_prime_UTR |
| CAACATATTTGTGAAAGCTA+AGG | 0.546083 | 2_3:-21960336 | Msa0284120:CDS |
| TCCCTTAACTTCACTGATAG+GGG | 0.555570 | 2_3:+21960220 | None:intergenic |
| TGAATTCAGTTTGATATGGA+AGG | 0.557211 | 2_3:-21960092 | Msa0284120:three_prime_UTR |
| TTGAAGCCTCATTGTTGTGA+TGG | 0.564153 | 2_3:+21961246 | None:intergenic |
| TGTGTTTGAACGAGCGAAGG+AGG | 0.575345 | 2_3:-21961294 | Msa0284120:CDS |
| CGATTTGGTTGAAAGAGCAA+AGG | 0.587120 | 2_3:-21961435 | Msa0284120:CDS |
| CGAAGTGAATAACATCATGT+TGG | 0.595595 | 2_3:+21959879 | None:intergenic |
| ATGATAAAGAAACTCATGGA+AGG | 0.607702 | 2_3:-21960265 | Msa0284120:CDS |
| GGATGCAGATCAAATGGCTG+AGG | 0.613409 | 2_3:-21961103 | Msa0284120:CDS |
| CATCATCACAGGGAAACTCA+TGG | 0.620339 | 2_3:-21961371 | Msa0284120:CDS |
| AAATGTGTTTGAACGAGCGA+AGG | 0.622012 | 2_3:-21961297 | Msa0284120:CDS |
| ATAAGAAAACACATTAGGAA+CGG | 0.623668 | 2_3:+21959767 | None:intergenic |
| AGCTTTAACATCATCCAATG+AGG | 0.623922 | 2_3:+21961322 | None:intergenic |
| CAATTAGTTAAAGAAGCAAG+AGG | 0.638899 | 2_3:-21961461 | Msa0284120:intron |
| TTGAGTGCAAATCATTGATG+TGG | 0.654051 | 2_3:-21959958 | Msa0284120:three_prime_UTR |
| GTGATGGAACACTTGAGCAA+TGG | 0.655478 | 2_3:+21961262 | None:intergenic |
| GTCTTCAAGTCATCATCACA+GGG | 0.662194 | 2_3:-21961381 | Msa0284120:CDS |
| GGCAAAAGTAAACGAAACGA+CGG | 0.677702 | 2_3:+21962361 | None:intergenic |
| AGTGTTCCATCACAACAATG+AGG | 0.706129 | 2_3:-21961252 | Msa0284120:CDS |
| TGATGACTTGAAGACTTCTG+AGG | 0.709585 | 2_3:+21961389 | None:intergenic |
| CAAGGTTAACAAAATCGACG+TGG | 0.714759 | 2_3:+21959731 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTTGTAAATTTTAATTAT+AGG | - | chr2_3:21961412-21961431 | Msa0284120:CDS | 10.0% |
| !! | AACATATAAAATTTGATTGA+AGG | + | chr2_3:21959921-21959940 | None:intergenic | 15.0% |
| !!! | AATTATTTTGCAAATTTGAA+GGG | + | chr2_3:21960142-21960161 | None:intergenic | 15.0% |
| !!! | TAATAGATTTTACAAACATT+TGG | + | chr2_3:21960208-21960227 | None:intergenic | 15.0% |
| !! | AAATATCAATCAATTAAATC+TGG | + | chr2_3:21960308-21960327 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTCGTTTTTTATG+TGG | - | chr2_3:21960429-21960448 | Msa0284120:intron | 15.0% |
| !!! | TAACTTATACCAAAATTTTA+TGG | - | chr2_3:21960896-21960915 | Msa0284120:intron | 15.0% |
| !!! | TCAATTTTTCCATAAAATTT+TGG | + | chr2_3:21960908-21960927 | None:intergenic | 15.0% |
| !!! | ACAGTATTTAATTTTGAAAT+TGG | - | chr2_3:21962163-21962182 | Msa0284120:intron | 15.0% |
| !!! | ATTTAATTTTGAAATTGGAT+TGG | - | chr2_3:21962168-21962187 | Msa0284120:intron | 15.0% |
| !!! | TTGTTTTGTTTTTTACAGTT+GGG | + | chr2_3:21959780-21959799 | None:intergenic | 20.0% |
| !!! | TTTGTTTTGTTTTTTACAGT+TGG | + | chr2_3:21959781-21959800 | None:intergenic | 20.0% |
| !! | ATTTGATTGAAGGAATAAAT+AGG | + | chr2_3:21959911-21959930 | None:intergenic | 20.0% |
| !!! | GAATTATTTTGCAAATTTGA+AGG | + | chr2_3:21960143-21960162 | None:intergenic | 20.0% |
| !! | GTTTGTAAAATCTATTAACA+TGG | - | chr2_3:21960211-21960230 | Msa0284120:CDS | 20.0% |
| !! | GACAAAAGTTTATAATTTCA+AGG | - | chr2_3:21960392-21960411 | Msa0284120:intron | 20.0% |
| !!! | TTGTTTTATGTTTGTCAAAT+AGG | - | chr2_3:21960971-21960990 | Msa0284120:intron | 20.0% |
| !!! | TGTTTTATGTTTGTCAAATA+GGG | - | chr2_3:21960972-21960991 | Msa0284120:intron | 20.0% |
| !! | AACAAACATTACTATAAAGA+AGG | + | chr2_3:21961146-21961165 | None:intergenic | 20.0% |
| !!! | TTTATAGTAATGTTTGTTAC+TGG | - | chr2_3:21961148-21961167 | Msa0284120:intron | 20.0% |
| !!! | TTATAGTAATGTTTGTTACT+GGG | - | chr2_3:21961149-21961168 | Msa0284120:intron | 20.0% |
| !!! | TTTGTTTTAACATTGATTTG+AGG | - | chr2_3:21961226-21961245 | Msa0284120:intron | 20.0% |
| !!! | AATATAAGTTTTAGCTTGAA+TGG | - | chr2_3:21961490-21961509 | Msa0284120:intron | 20.0% |
| ! | TTATTAGAATTGATACCTGA+TGG | + | chr2_3:21959881-21959900 | None:intergenic | 25.0% |
| ! | TTGAAGGAATAAATAGGAAA+GGG | + | chr2_3:21959905-21959924 | None:intergenic | 25.0% |
| ! | ATTGAAGGAATAAATAGGAA+AGG | + | chr2_3:21959906-21959925 | None:intergenic | 25.0% |
| ! | TATAATTTCAAGGACTACAA+TGG | - | chr2_3:21960402-21960421 | Msa0284120:intron | 25.0% |
| !!! | TTTTTCGTTTTTTATGTGGT+AGG | - | chr2_3:21960433-21960452 | Msa0284120:intron | 25.0% |
| !!! | TTTTCGTTTTTTATGTGGTA+GGG | - | chr2_3:21960434-21960453 | Msa0284120:intron | 25.0% |
| !!! | TCAGGTATATCTTAATTTGT+AGG | - | chr2_3:21961048-21961067 | Msa0284120:intron | 25.0% |
| !!! | TTTTCTTTTTCAATGGGAAA+GGG | - | chr2_3:21961261-21961280 | Msa0284120:CDS | 25.0% |
| ! | ATTATATTGCATATAGAGCA+AGG | + | chr2_3:21961596-21961615 | None:intergenic | 25.0% |
| !!! | AATGAAGTCTTATTTAATCC+TGG | - | chr2_3:21961646-21961665 | Msa0284120:intron | 25.0% |
| !!! | ATGAAGTCTTATTTAATCCT+GGG | - | chr2_3:21961647-21961666 | Msa0284120:intron | 25.0% |
| ! | ATGTATATGTGCAATGTTAA+AGG | + | chr2_3:21962118-21962137 | None:intergenic | 25.0% |
| !! | TAAATGTTTTATCTCAGTCT+TGG | - | chr2_3:21962279-21962298 | Msa0284120:intron | 25.0% |
| ! | ATAAGAAAACACATTAGGAA+CGG | + | chr2_3:21962332-21962351 | None:intergenic | 25.0% |
| ! | GTAAGATAAGAAAACACATT+AGG | + | chr2_3:21962337-21962356 | None:intergenic | 25.0% |
| !!! | AGAATTTGTTGTTTTCGTCA+TGG | + | chr2_3:21959858-21959877 | None:intergenic | 30.0% |
| AAAACAACAAATTCTCCATC+AGG | - | chr2_3:21959863-21959882 | Msa0284120:three_prime_UTR | 30.0% | |
| ATGCGTATACTTCGAATTTA+AGG | + | chr2_3:21959967-21959986 | None:intergenic | 30.0% | |
| !! | AGAGATTTTGTTATCCAGAA+AGG | - | chr2_3:21960036-21960055 | Msa0284120:three_prime_UTR | 30.0% |
| AATTTATAAGTTACCGAAGC+TGG | + | chr2_3:21960070-21960089 | None:intergenic | 30.0% | |
| CTACTATTTCGCAAATTTGA+GGG | - | chr2_3:21960347-21960366 | Msa0284120:CDS | 30.0% | |
| AATTTGAGGGATCATATTAG+AGG | - | chr2_3:21960360-21960379 | Msa0284120:intron | 30.0% | |
| ATTTGAGGGATCATATTAGA+GGG | - | chr2_3:21960361-21960380 | Msa0284120:intron | 30.0% | |
| !!! | TTTCGTTTTTTATGTGGTAG+GGG | - | chr2_3:21960435-21960454 | Msa0284120:intron | 30.0% |
| ! | AAAAATAGACCTTTGGTGTA+TGG | + | chr2_3:21960561-21960580 | None:intergenic | 30.0% |
| ACACACAAAAAATAGACCTT+TGG | + | chr2_3:21960568-21960587 | None:intergenic | 30.0% | |
| CAATTAGTTAAAGAAGCAAG+AGG | - | chr2_3:21960635-21960654 | Msa0284120:intron | 30.0% | |
| AACCATAAACCAAAAATCTC+TGG | - | chr2_3:21961018-21961037 | Msa0284120:intron | 30.0% | |
| AAAGAAGGCAACTATAAAGA+AGG | + | chr2_3:21961131-21961150 | None:intergenic | 30.0% | |
| !!! | TGGTGGTTTTCTTTTTCAAT+GGG | - | chr2_3:21961255-21961274 | Msa0284120:CDS | 30.0% |
| !!! | GTTTTCTTTTTCAATGGGAA+AGG | - | chr2_3:21961260-21961279 | Msa0284120:CDS | 30.0% |
| !!! | TTTCTTTTTCAATGGGAAAG+GGG | - | chr2_3:21961262-21961281 | Msa0284120:CDS | 30.0% |
| AAGGCAAAATCTTAATACTG+TGG | - | chr2_3:21961368-21961387 | Msa0284120:CDS | 30.0% | |
| ! | AGCATATTAGACTCACATTT+TGG | + | chr2_3:21961444-21961463 | None:intergenic | 30.0% |
| ATCATATCAAACAAAAACCC+AGG | + | chr2_3:21961667-21961686 | None:intergenic | 30.0% | |
| CAACATATTTGTGAAAGCTA+AGG | - | chr2_3:21961760-21961779 | Msa0284120:intron | 30.0% | |
| TGACTTATCATGATGTATGA+TGG | + | chr2_3:21961798-21961817 | None:intergenic | 30.0% | |
| GAGTTTCTTTATCATGATGA+TGG | + | chr2_3:21961826-21961845 | None:intergenic | 30.0% | |
| CATCATGATAAAGAAACTCA+TGG | - | chr2_3:21961827-21961846 | Msa0284120:intron | 30.0% | |
| ATGATAAAGAAACTCATGGA+AGG | - | chr2_3:21961831-21961850 | Msa0284120:intron | 30.0% | |
| TTTGCTCTTTCAAAGACATT+TGG | + | chr2_3:21961902-21961921 | None:intergenic | 30.0% | |
| AATGGTCATCTTTCTTTCTT+TGG | + | chr2_3:21961959-21961978 | None:intergenic | 30.0% | |
| GTGTTGAATTCAGTTTGATA+TGG | - | chr2_3:21962000-21962019 | Msa0284120:intron | 30.0% | |
| TGAATTCAGTTTGATATGGA+AGG | - | chr2_3:21962004-21962023 | Msa0284120:intron | 30.0% | |
| ATAGTAAACATGCTTGTACT+TGG | - | chr2_3:21962049-21962068 | Msa0284120:intron | 30.0% | |
| CTTGGATTATAGTAGTGTTT+AGG | - | chr2_3:21962067-21962086 | Msa0284120:intron | 30.0% | |
| !! | AGTGTTTAGGATGTTTTATG+TGG | - | chr2_3:21962080-21962099 | Msa0284120:intron | 30.0% |
| !! | GTGTTTAGGATGTTTTATGT+GGG | - | chr2_3:21962081-21962100 | Msa0284120:intron | 30.0% |
| CAACATGATGTTATTCACTT+CGG | - | chr2_3:21962218-21962237 | Msa0284120:intron | 30.0% | |
| !! | TTGTATCTTCAGGTTGTAAA+AGG | - | chr2_3:21962302-21962321 | Msa0284120:five_prime_UTR | 30.0% |
| CATCAACAAAAAATCCACTC+TGG | - | chr2_3:21959807-21959826 | Msa0284120:intron | 35.0% | |
| ! | TTTTCGTCATGGTGAGTTTA+AGG | + | chr2_3:21959847-21959866 | None:intergenic | 35.0% |
| GCTACTATTTCGCAAATTTG+AGG | - | chr2_3:21960346-21960365 | Msa0284120:CDS | 35.0% | |
| !!! | TTCGTTTTTTATGTGGTAGG+GGG | - | chr2_3:21960436-21960455 | Msa0284120:intron | 35.0% |
| ! | CGTATAGAGCTTTGGTAATT+TGG | - | chr2_3:21960495-21960514 | Msa0284120:intron | 35.0% |
| !!! | AGGTCTATTTTTTGTGTGTG+TGG | - | chr2_3:21960569-21960588 | Msa0284120:intron | 35.0% |
| ! | TTTTGTGTGTGTGGAAGTTA+TGG | - | chr2_3:21960578-21960597 | Msa0284120:intron | 35.0% |
| TGGAAGTTATGGAAACTATG+AGG | - | chr2_3:21960589-21960608 | Msa0284120:intron | 35.0% | |
| TTTGCTCTTTCAACCAAATC+GGG | + | chr2_3:21960662-21960681 | None:intergenic | 35.0% | |
| CTTTGCTCTTTCAACCAAAT+CGG | + | chr2_3:21960663-21960682 | None:intergenic | 35.0% | |
| AAGAGCAAAGGAAGAATTTG+AGG | - | chr2_3:21960673-21960692 | Msa0284120:intron | 35.0% | |
| ! | AGCTTTAACATCATCCAATG+AGG | + | chr2_3:21960777-21960796 | None:intergenic | 35.0% |
| AAATAGGGATGCAGATCAAA+TGG | - | chr2_3:21960987-21961006 | Msa0284120:intron | 35.0% | |
| !!! | AGCCAGAGATTTTTGGTTTA+TGG | + | chr2_3:21961023-21961042 | None:intergenic | 35.0% |
| !!! | GTAGGAGTGTTTCTTTTTCT+TGG | - | chr2_3:21961066-21961085 | Msa0284120:intron | 35.0% |
| GCTTCATCAATTTCGTGTAT+TGG | - | chr2_3:21961171-21961190 | Msa0284120:intron | 35.0% | |
| !! | CAATTTCGTGTATTGGTTCT+TGG | - | chr2_3:21961178-21961197 | Msa0284120:intron | 35.0% |
| !! | ACATTGATTTGAGGAACTTG+TGG | - | chr2_3:21961235-21961254 | Msa0284120:CDS | 35.0% |
| !!! | GTGGTGGTTTTCTTTTTCAA+TGG | - | chr2_3:21961254-21961273 | Msa0284120:CDS | 35.0% |
| !! | TTAGCTTGAATGGTTTGTTG+AGG | - | chr2_3:21961500-21961519 | Msa0284120:intron | 35.0% |
| CATATAGAGCAAGGAATACA+AGG | + | chr2_3:21961587-21961606 | None:intergenic | 35.0% | |
| CTTTCTTTGGATGTATTGCT+TGG | + | chr2_3:21961946-21961965 | None:intergenic | 35.0% | |
| ! | ACCATTTTCCTTCCTTACAA+TGG | - | chr2_3:21961973-21961992 | Msa0284120:intron | 35.0% |
| TCCATTGTAAGGAAGGAAAA+TGG | + | chr2_3:21961977-21961996 | None:intergenic | 35.0% | |
| TTTCCTTCCTTACAATGGAA+TGG | - | chr2_3:21961978-21961997 | Msa0284120:intron | 35.0% | |
| TTCAACACCATTCCATTGTA+AGG | + | chr2_3:21961988-21962007 | None:intergenic | 35.0% | |
| TTGAGTGCAAATCATTGATG+TGG | - | chr2_3:21962138-21962157 | Msa0284120:intron | 35.0% | |
| CGAAGTGAATAACATCATGT+TGG | + | chr2_3:21962220-21962239 | None:intergenic | 35.0% | |
| GGCAAAAGTAAACGAAACGA+CGG | + | chr2_3:21959738-21959757 | None:intergenic | 40.0% | |
| TTTGTGTAGGAAAACCAGAG+TGG | + | chr2_3:21959824-21959843 | None:intergenic | 40.0% | |
| ! | GGTGAGTTTAAGGTTTGTGT+AGG | + | chr2_3:21959837-21959856 | None:intergenic | 40.0% |
| !!! | TTCCTTGCTTGTTTTGATGC+TGG | - | chr2_3:21960269-21960288 | Msa0284120:CDS | 40.0% |
| !!! | TCCTTGCTTGTTTTGATGCT+GGG | - | chr2_3:21960270-21960289 | Msa0284120:CDS | 40.0% |
| ACACGATACGTATAGAGCTT+TGG | - | chr2_3:21960487-21960506 | Msa0284120:intron | 40.0% | |
| TCGACACAAAAACAACGCAT+GGG | + | chr2_3:21960536-21960555 | None:intergenic | 40.0% | |
| ATCGACACAAAAACAACGCA+TGG | + | chr2_3:21960537-21960556 | None:intergenic | 40.0% | |
| !! | CGATTTGGTTGAAAGAGCAA+AGG | - | chr2_3:21960661-21960680 | Msa0284120:intron | 40.0% |
| TGATGACTTGAAGACTTCTG+AGG | + | chr2_3:21960710-21960729 | None:intergenic | 40.0% | |
| AGTCTTCAAGTCATCATCAC+AGG | - | chr2_3:21960714-21960733 | Msa0284120:intron | 40.0% | |
| GTCTTCAAGTCATCATCACA+GGG | - | chr2_3:21960715-21960734 | Msa0284120:intron | 40.0% | |
| CATAGACGAGAATACCTCAT+TGG | - | chr2_3:21960760-21960779 | Msa0284120:intron | 40.0% | |
| TTCGCTCGTTCAAACACATT+TGG | + | chr2_3:21960800-21960819 | None:intergenic | 40.0% | |
| AAATGTGTTTGAACGAGCGA+AGG | - | chr2_3:21960799-21960818 | Msa0284120:intron | 40.0% | |
| AGTGTTCCATCACAACAATG+AGG | - | chr2_3:21960844-21960863 | Msa0284120:intron | 40.0% | |
| TTGAAGCCTCATTGTTGTGA+TGG | + | chr2_3:21960853-21960872 | None:intergenic | 40.0% | |
| AGGCTTCAACTCATGACATA+AGG | - | chr2_3:21960864-21960883 | Msa0284120:intron | 40.0% | |
| ! | GATGAAGAGCCAGAGATTTT+TGG | + | chr2_3:21961030-21961049 | None:intergenic | 40.0% |
| !! | AAAATCTCTGGCTCTTCATC+AGG | - | chr2_3:21961030-21961049 | Msa0284120:intron | 40.0% |
| ! | TTGATTTGAGGAACTTGTGG+TGG | - | chr2_3:21961238-21961257 | Msa0284120:CDS | 40.0% |
| ! | TTTTGCCTTTGTAACCTCGA+GGG | + | chr2_3:21961357-21961376 | None:intergenic | 40.0% |
| ! | ATTTTGCCTTTGTAACCTCG+AGG | + | chr2_3:21961358-21961377 | None:intergenic | 40.0% |
| !! | CGAATGGATTAGACAAGGTA+GGG | + | chr2_3:21961528-21961547 | None:intergenic | 40.0% |
| CCTACCTTGTCTAATCCATT+CGG | - | chr2_3:21961526-21961545 | Msa0284120:intron | 40.0% | |
| AAGAAATTGCATGTGCCGAA+TGG | + | chr2_3:21961544-21961563 | None:intergenic | 40.0% | |
| TACCCCTATCAGTGAAGTTA+AGG | - | chr2_3:21961874-21961893 | Msa0284120:intron | 40.0% | |
| ACCCCTATCAGTGAAGTTAA+GGG | - | chr2_3:21961875-21961894 | Msa0284120:intron | 40.0% | |
| TCCCTTAACTTCACTGATAG+GGG | + | chr2_3:21961879-21961898 | None:intergenic | 40.0% | |
| GTCCCTTAACTTCACTGATA+GGG | + | chr2_3:21961880-21961899 | None:intergenic | 40.0% | |
| ACACCATTCCATTGTAAGGA+AGG | + | chr2_3:21961984-21962003 | None:intergenic | 40.0% | |
| GATGTTATTCACTTCGGCAA+TGG | - | chr2_3:21962224-21962243 | Msa0284120:intron | 40.0% | |
| TCAGTCTTGGTTGTATCTTC+AGG | - | chr2_3:21962292-21962311 | Msa0284120:intron | 40.0% | |
| CAAGGTTAACAAAATCGACG+TGG | + | chr2_3:21962368-21962387 | None:intergenic | 40.0% | |
| GGAGAAGAACAAGAAGAGAC+AGG | + | chr2_3:21959759-21959778 | None:intergenic | 45.0% | |
| ! | AAAGGATTAGCAGCCAGCTT+CGG | - | chr2_3:21960054-21960073 | Msa0284120:three_prime_UTR | 45.0% |
| ACCCAGCATCAAAACAAGCA+AGG | + | chr2_3:21960274-21960293 | None:intergenic | 45.0% | |
| CATCATCACAGGGAAACTCA+TGG | - | chr2_3:21960725-21960744 | Msa0284120:intron | 45.0% | |
| ! | GTGATGGAACACTTGAGCAA+TGG | + | chr2_3:21960837-21960856 | None:intergenic | 45.0% |
| GTTCTTGGAGTTGCATGTTG+TGG | - | chr2_3:21961193-21961212 | Msa0284120:intron | 45.0% | |
| AATTTGAACCCTATCCCTCG+AGG | - | chr2_3:21961340-21961359 | Msa0284120:CDS | 45.0% | |
| CTTTGTAACCTCGAGGGATA+GGG | + | chr2_3:21961351-21961370 | None:intergenic | 45.0% | |
| !! | CCGAATGGATTAGACAAGGT+AGG | + | chr2_3:21961529-21961548 | None:intergenic | 45.0% |
| !! | TGTGCCGAATGGATTAGACA+AGG | + | chr2_3:21961533-21961552 | None:intergenic | 45.0% |
| CAAGGAATACAAGGCAATGG+AGG | + | chr2_3:21961578-21961597 | None:intergenic | 45.0% | |
| GAGCAAGGAATACAAGGCAA+TGG | + | chr2_3:21961581-21961600 | None:intergenic | 45.0% | |
| GGTCCCTTAACTTCACTGAT+AGG | + | chr2_3:21961881-21961900 | None:intergenic | 45.0% | |
| AGCTGGCTGCTAATCCTTTC+TGG | + | chr2_3:21960053-21960072 | None:intergenic | 50.0% | |
| ! | GTGTCGATGCCATACACCAA+AGG | - | chr2_3:21960549-21960568 | Msa0284120:intron | 50.0% |
| AGAAGCAAGAGGACCCGATT+TGG | - | chr2_3:21960646-21960665 | Msa0284120:intron | 50.0% | |
| TGTGTTTGAACGAGCGAAGG+AGG | - | chr2_3:21960802-21960821 | Msa0284120:intron | 50.0% | |
| GGATGCAGATCAAATGGCTG+AGG | - | chr2_3:21960993-21961012 | Msa0284120:intron | 50.0% | |
| CCTTTGTAACCTCGAGGGAT+AGG | + | chr2_3:21961352-21961371 | None:intergenic | 50.0% | |
| CCTATCCCTCGAGGTTACAA+AGG | - | chr2_3:21961349-21961368 | Msa0284120:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 21959729 | 21962389 | 21959729 | ID=Msa0284120;Name=Msa0284120 |
| chr2_3 | mRNA | 21959729 | 21962389 | 21959729 | ID=Msa0284120-mRNA-1;Parent=Msa0284120;Name=Msa0284120-mRNA-1;_AED=0.18;_eAED=0.18;_QI=108|1|1|1|0.6|0.16|6|392|187 |
| chr2_3 | exon | 21959729 | 21959822 | 21959729 | ID=Msa0284120-mRNA-1:exon:8613;Parent=Msa0284120-mRNA-1 |
| chr2_3 | exon | 21959847 | 21960377 | 21959847 | ID=Msa0284120-mRNA-1:exon:8612;Parent=Msa0284120-mRNA-1 |
| chr2_3 | exon | 21961067 | 21961125 | 21961067 | ID=Msa0284120-mRNA-1:exon:8611;Parent=Msa0284120-mRNA-1 |
| chr2_3 | exon | 21961233 | 21961476 | 21961233 | ID=Msa0284120-mRNA-1:exon:8610;Parent=Msa0284120-mRNA-1 |
| chr2_3 | exon | 21962234 | 21962279 | 21962234 | ID=Msa0284120-mRNA-1:exon:8609;Parent=Msa0284120-mRNA-1 |
| chr2_3 | exon | 21962300 | 21962389 | 21962300 | ID=Msa0284120-mRNA-1:exon:8608;Parent=Msa0284120-mRNA-1 |
| chr2_3 | five_prime_UTR | 21962300 | 21962389 | 21962300 | ID=Msa0284120-mRNA-1:five_prime_utr;Parent=Msa0284120-mRNA-1 |
| chr2_3 | five_prime_UTR | 21962262 | 21962279 | 21962262 | ID=Msa0284120-mRNA-1:five_prime_utr;Parent=Msa0284120-mRNA-1 |
| chr2_3 | CDS | 21962234 | 21962261 | 21962234 | ID=Msa0284120-mRNA-1:cds;Parent=Msa0284120-mRNA-1 |
| chr2_3 | CDS | 21961233 | 21961476 | 21961233 | ID=Msa0284120-mRNA-1:cds;Parent=Msa0284120-mRNA-1 |
| chr2_3 | CDS | 21961067 | 21961125 | 21961067 | ID=Msa0284120-mRNA-1:cds;Parent=Msa0284120-mRNA-1 |
| chr2_3 | CDS | 21960145 | 21960377 | 21960145 | ID=Msa0284120-mRNA-1:cds;Parent=Msa0284120-mRNA-1 |
| chr2_3 | three_prime_UTR | 21959847 | 21960144 | 21959847 | ID=Msa0284120-mRNA-1:three_prime_utr;Parent=Msa0284120-mRNA-1 |
| chr2_3 | three_prime_UTR | 21959729 | 21959822 | 21959729 | ID=Msa0284120-mRNA-1:three_prime_utr;Parent=Msa0284120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
