AlfalfaGEDB | Msa0532790

M. sativa cultivar zhongmu-4 / Msa0532790

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0532790	XP_003607083.1	88.267	554	14	6	1	551	1	506	0.0	959

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0532790	sp\|Q8H1F0\|BZP29_ARATH	54.945	546	139	26	19	519	29	512	1.80e-150	446

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0532790	G7JJX7	88.267	554	14	6	1	551	1	506	0.0	959

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TFs/TRs:

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Gene ID	Type	Classification
Msa0532790	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0054730	Msa0532790	0.863931	1.750063e-64	-8.615850e-47
Msa0058440	Msa0532790	0.818709	1.701714e-52	-8.615850e-47
Msa0106370	Msa0532790	0.829443	5.132965e-55	-8.615850e-47
Msa0153000	Msa0532790	0.805699	1.177005e-49	-8.615850e-47
Msa0175320	Msa0532790	0.811024	8.611199e-51	-8.615850e-47
Msa0180070	Msa0532790	0.858646	7.143445e-63	-8.615850e-47
Msa0284120	Msa0532790	0.800384	1.478135e-48	-8.615850e-47
Msa0494620	Msa0532790	0.845981	2.892679e-59	-8.615850e-47
Msa0531970	Msa0532790	0.800520	1.387040e-48	-8.615850e-47
Msa0532790	Msa0585000	0.802099	6.587968e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0532790	MtrunA17_Chr4g0036071	88.267	554	14	6	1	551	1	506	0.0	959
Msa0532790	MtrunA17_Chr1g0156051	43.040	546	186	19	19	513	31	502	5.98e-85	274
Msa0532790	MtrunA17_Chr6g0463571	46.341	246	91	7	287	529	76	283	7.25e-44	158
Msa0532790	MtrunA17_Chr3g0107491	55.882	170	36	2	351	520	160	290	5.85e-43	157
Msa0532790	MtrunA17_Chr2g0329551	39.189	296	93	8	215	504	109	323	2.19e-42	157
Msa0532790	MtrunA17_Chr5g0432701	59.028	144	29	1	353	496	144	257	2.24e-42	155
Msa0532790	MtrunA17_Chr3g0128781	56.081	148	35	1	349	496	89	206	2.68e-40	148
Msa0532790	MtrunA17_Chr2g0306581	81.633	49	9	0	356	404	1	49	5.98e-19	82.8
Msa0532790	MtrunA17_Chr2g0316551	49.383	81	41	0	366	446	206	286	7.41e-16	79.3
Msa0532790	MtrunA17_Chr2g0325131	49.383	81	41	0	366	446	189	269	1.85e-15	77.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0532790	AT4G38900.2	54.945	546	139	26	19	519	29	512	1.83e-151	446
Msa0532790	AT4G38900.3	54.945	546	139	26	19	519	29	512	1.83e-151	446
Msa0532790	AT4G38900.1	54.348	552	139	27	19	519	29	518	1.96e-148	438
Msa0532790	AT2G21230.4	50.415	482	156	17	87	531	72	507	1.05e-118	360
Msa0532790	AT2G21230.1	50.415	482	156	17	87	531	72	507	1.05e-118	360
Msa0532790	AT2G21230.3	50.207	482	163	17	87	531	72	513	4.67e-118	359
Msa0532790	AT2G21230.2	54.962	393	128	15	87	446	72	448	4.54e-111	339
Msa0532790	AT2G40620.1	53.448	174	50	2	323	496	104	246	4.82e-43	157
Msa0532790	AT1G06850.1	54.268	164	43	2	339	500	117	250	3.54e-42	154
Msa0532790	AT2G31370.5	39.394	297	100	8	200	496	83	299	4.90e-42	155

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Find 156 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGTAGAAAATCCAAA+TGG	0.578268	4_1:-7326784	None:intergenic
AAAACTTGCTGAGATTGCTA+TGG	0.624523	4_1:+7327380	Msa0532790:CDS
AAAAGCGGCGGAAATGCCGA+AGG	0.659034	4_1:-7326243	None:intergenic
AAAGAATGAGTTAAAGCAAT+AGG	0.398703	4_1:+7329802	Msa0532790:CDS
AAAGCAATAGGTTGGGTTGG+AGG	0.477774	4_1:+7329814	Msa0532790:exon
AAATAGGTGGGATCTGGTGT+GGG	0.439432	4_1:-7326465	None:intergenic
AACGTCAGCATGATCCGACG+TGG	0.690918	4_1:-7326653	None:intergenic
AACGTGCAAGGGCTGAGAGG+CGG	0.597136	4_1:-7326616	None:intergenic
AAGAAATCGTTGTCGCCGGA+AGG	0.549807	4_1:+7326913	Msa0532790:CDS
AAGATGCCGCCTTCGCCTGG+AGG	0.587385	4_1:+7327249	Msa0532790:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGATTATTCATCTGAGAGTA+AGG	-	chr4_1:7326493-7326512	None:intergenic	30.0%
TCTAACAGTGATATTCCATT+TGG	+	chr4_1:7326769-7326788	Msa0532790:CDS	30.0%
TTGGGAATATAGTAATGTAG+AGG	+	chr4_1:7326888-7326907	Msa0532790:CDS	30.0%
GTTAGTATTGTCAATATGGA+TGG	+	chr4_1:7327454-7327473	Msa0532790:intron	30.0%
TAAGCCTTCATTTGATATTG+TGG	+	chr4_1:7327716-7327735	Msa0532790:intron	30.0%
TTAACTTCAACTCACTATTC+TGG	-	chr4_1:7327843-7327862	None:intergenic	30.0%
CTCTGCATACACAAAAAAAT+AGG	-	chr4_1:7327901-7327920	None:intergenic	30.0%
GATTGAAAGAAATACCATCT+CGG	-	chr4_1:7327999-7328018	None:intergenic	30.0%
CATTCATAATACAAGCAAGT+AGG	-	chr4_1:7328291-7328310	None:intergenic	30.0%
CTACTTGCTTGTATTATGAA+TGG	+	chr4_1:7328289-7328308	Msa0532790:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	7326081	7330203	7326081	ID=Msa0532790;Name=Msa0532790
chr4_1	mRNA	7326081	7330203	7326081	ID=Msa0532790-mRNA-1;Parent=Msa0532790;Name=Msa0532790-mRNA-1;_AED=0.03;_eAED=0.03;_QI=223\|0.5\|0.8\|0.8\|1\|1\|5\|380\|551
chr4_1	exon	7326081	7327424	7326081	ID=Msa0532790-mRNA-1:exon:2512;Parent=Msa0532790-mRNA-1
chr4_1	exon	7327513	7327645	7327513	ID=Msa0532790-mRNA-1:exon:2513;Parent=Msa0532790-mRNA-1
chr4_1	exon	7327919	7328003	7327919	ID=Msa0532790-mRNA-1:exon:2514;Parent=Msa0532790-mRNA-1
chr4_1	exon	7328413	7328502	7328413	ID=Msa0532790-mRNA-1:exon:2515;Parent=Msa0532790-mRNA-1
chr4_1	exon	7329597	7330203	7329597	ID=Msa0532790-mRNA-1:exon:2516;Parent=Msa0532790-mRNA-1
chr4_1	five_prime_UTR	7326081	7326303	7326081	ID=Msa0532790-mRNA-1:five_prime_utr;Parent=Msa0532790-mRNA-1
chr4_1	CDS	7326304	7327424	7326304	ID=Msa0532790-mRNA-1:cds;Parent=Msa0532790-mRNA-1
chr4_1	CDS	7327513	7327645	7327513	ID=Msa0532790-mRNA-1:cds;Parent=Msa0532790-mRNA-1
chr4_1	CDS	7327919	7328003	7327919	ID=Msa0532790-mRNA-1:cds;Parent=Msa0532790-mRNA-1
chr4_1	CDS	7328413	7328502	7328413	ID=Msa0532790-mRNA-1:cds;Parent=Msa0532790-mRNA-1
chr4_1	CDS	7329597	7329823	7329597	ID=Msa0532790-mRNA-1:cds;Parent=Msa0532790-mRNA-1
chr4_1	three_prime_UTR	7329824	7330203	7329824	ID=Msa0532790-mRNA-1:three_prime_utr;Parent=Msa0532790-mRNA-1

Gene Sequence

>Msa0532790

ATGGAAGATAGTGAAGCAGCTTCATCTTTCATGAAACAACAACAACAAATGAACAATCATATGGAACAATTAACCATACCACAGTTTAATGCATCATCACAATCACAAATGCGAACTGTTAGTAGCAGAAATCAAAGAGGAGGTGGTATACCACCATCACACCCACACCAGATCCCACCTATTTCACCTTACTCTCAGATGAATAATCAGATCCCGGTTTCACGGCCGCAAATGCCGTCGCATAGTACAAGTCCTACACCTTCCCACACACGATCACTCTCTCAACCGTCTTTTTTCTCTCTCGACTCTCTTCCGCCTCTCAGCCCTTGCACGTTTCGCGAATCTTCCTCCACGTCGGATCATGCTGACGTTTCCATGGAAGATCGTGACGTCACTTCTCATTCACCGTTACCTCCGTTTGCTGCTAGAAACCCTTCTCTGCCGCCGAGAAAATCTCACCGGCGTTCTAACAGTGATATTCCATTTGGATTTTCTACTGTTTTGCAGTCTTCGCCGCCGTTGATTCCGCTTCGAGGAAGGGAAGTTGCTAAACCTAATTCGTCGGTGGTGAAAAGGGAAACTAATTGGGAATATAGTAATGTAGAGGAGAAGAAATCGTTGTCGCCGGAAGGTGAAGTTGTGGATGATCTTTTTTCTGCTTATATGAATTTGGATAACATTGATGCAATTAACGATGATAAAAACGCGGCTACTGGTGATAATCGCGATGATTTGGATAGTAGAGCAAGTGGAACGAAGACTAATGGTGGTGATAGTAGTGATAATGAAGCTGAGAGTAGTGTTAATGAGAGTGGGGATAGTATGCAGAGGAGGGAAGGGAATAAGAGAAGTGCAGGAGGTGATATTGCACCGACTACGAGACACTATAGGAGTGTTTCGATGGATAGTTTTATTGGGAAGTTGAATTTCAATGATGAGTCTTTGAAGATGCCGCCTTCGCCTGGAGGGTTGATGTCGCCTGGTAATTCGGGTGATGGGAATTCAGTGGCTTTTAGTTTGGAGTTTGGGAATGGTGAGTTTAGTGGGCCAGAGTTGAAGAAAATTATGGCTAATGAAAAACTTGCTGAGATTGCTATGGCTGATCCGAAGCGGGCTAAGAGGATATTGGCTAATAGGCAATCAGCTGCGCGTTCCAAAGAGCGCAAAATGCGATACATTTCCGAGCTAGAACACAAGGTTCAGACTCTGCAGACTGAAGCCACTACACTTTCTGCACAACTTACTTTGTTGCAGAGAGATTCAGTTGGACTCACTAACCAGAATAGTGAGTTGAAGTTCCGCCTTCAATCCATGGAACAACAGGCAAAACTCCGAGATGACTGCTGTTCTGTGTTTGCTGCTGCCAGTAGGGGCTGTCTGTGCTGGTTTATATTTACTGCTAAAGTTTGGTGTTTGGCCAAGGCGGTAGCTCTGAATGAGGCGCTTACTGCCGAAGTTCAAAGACTGAAGATTGCTACAGCTGAGCTGAATGGGGAGTCACTTCCTTCTAACTGCATGATTCCGCAACATTCTGTCAACCCTATGATGTTCCAACAACAGCATCAGCATCAGCATCAGCAGCATCAACAACAGCAGCAGCATCAACAACAGCAGCAGAATGGTAATGCCAACTCAAAGAATGAGTTAAAGCAATAG

Protein sequence

>Msa0532790

MEDSEAASSFMKQQQQMNNHMEQLTIPQFNASSQSQMRTVSSRNQRGGGIPPSHPHQIPPISPYSQMNNQIPVSRPQMPSHSTSPTPSHTRSLSQPSFFSLDSLPPLSPCTFRESSSTSDHADVSMEDRDVTSHSPLPPFAARNPSLPPRKSHRRSNSDIPFGFSTVLQSSPPLIPLRGREVAKPNSSVVKRETNWEYSNVEEKKSLSPEGEVVDDLFSAYMNLDNIDAINDDKNAATGDNRDDLDSRASGTKTNGGDSSDNEAESSVNESGDSMQRREGNKRSAGGDIAPTTRHYRSVSMDSFIGKLNFNDESLKMPPSPGGLMSPGNSGDGNSVAFSLEFGNGEFSGPELKKIMANEKLAEIAMADPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNSELKFRLQSMEQQAKLRDDCCSVFAAASRGCLCWFIFTAKVWCLAKAVALNEALTAEVQRLKIATAELNGESLPSNCMIPQHSVNPMMFQQQHQHQHQQHQQQQQHQQQQQNGNANSKNELKQ*