AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0532790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0532790 MtrunA17_Chr4g0036071 88.267 554 14 6 1 551 1 506 0.0 959
Msa0532790 MtrunA17_Chr1g0156051 43.040 546 186 19 19 513 31 502 5.98e-85 274
Msa0532790 MtrunA17_Chr6g0463571 46.341 246 91 7 287 529 76 283 7.25e-44 158
Msa0532790 MtrunA17_Chr3g0107491 55.882 170 36 2 351 520 160 290 5.85e-43 157
Msa0532790 MtrunA17_Chr2g0329551 39.189 296 93 8 215 504 109 323 2.19e-42 157
Msa0532790 MtrunA17_Chr5g0432701 59.028 144 29 1 353 496 144 257 2.24e-42 155
Msa0532790 MtrunA17_Chr3g0128781 56.081 148 35 1 349 496 89 206 2.68e-40 148
Msa0532790 MtrunA17_Chr2g0306581 81.633 49 9 0 356 404 1 49 5.98e-19 82.8
Msa0532790 MtrunA17_Chr2g0316551 49.383 81 41 0 366 446 206 286 7.41e-16 79.3
Msa0532790 MtrunA17_Chr2g0325131 49.383 81 41 0 366 446 189 269 1.85e-15 77.8
Msa0532790 MtrunA17_Chr4g0040891 36.000 125 57 2 322 446 171 272 3.57e-15 77.0
Msa0532790 MtrunA17_Chr1g0202051 37.692 130 72 3 322 445 76 202 4.76e-14 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0532790 AT4G38900.2 54.945 546 139 26 19 519 29 512 1.83e-151 446
Msa0532790 AT4G38900.3 54.945 546 139 26 19 519 29 512 1.83e-151 446
Msa0532790 AT4G38900.1 54.348 552 139 27 19 519 29 518 1.96e-148 438
Msa0532790 AT2G21230.4 50.415 482 156 17 87 531 72 507 1.05e-118 360
Msa0532790 AT2G21230.1 50.415 482 156 17 87 531 72 507 1.05e-118 360
Msa0532790 AT2G21230.3 50.207 482 163 17 87 531 72 513 4.67e-118 359
Msa0532790 AT2G21230.2 54.962 393 128 15 87 446 72 448 4.54e-111 339
Msa0532790 AT2G40620.1 53.448 174 50 2 323 496 104 246 4.82e-43 157
Msa0532790 AT1G06850.1 54.268 164 43 2 339 500 117 250 3.54e-42 154
Msa0532790 AT2G31370.5 39.394 297 100 8 200 496 83 299 4.90e-42 155
Msa0532790 AT2G31370.2 39.394 297 100 8 200 496 83 299 1.04e-41 155
Msa0532790 AT2G31370.4 39.394 297 100 8 200 496 83 299 1.04e-41 155
Msa0532790 AT2G31370.1 39.394 297 100 8 200 496 83 299 1.04e-41 155
Msa0532790 AT2G31370.7 39.394 297 100 8 200 496 83 299 1.04e-41 155
Msa0532790 AT2G31370.3 39.394 297 100 8 200 496 83 299 1.04e-41 155
Msa0532790 AT2G31370.6 39.394 297 100 8 200 496 83 299 1.04e-41 155
Msa0532790 AT1G06070.1 54.037 161 42 2 343 501 185 315 1.39e-40 152
Msa0532790 AT1G43700.1 44.444 216 75 5 294 496 109 292 1.93e-39 147
Msa0532790 AT2G12940.1 37.327 217 115 4 280 496 68 263 1.76e-34 132
Msa0532790 AT2G13150.1 40.606 165 90 3 282 446 71 227 2.82e-31 122
Msa0532790 AT1G06850.2 65.517 87 28 1 339 423 117 203 4.63e-25 104
Msa0532790 AT2G12900.1 34.682 173 92 3 332 496 72 231 1.59e-24 103
Msa0532790 AT2G21235.1 31.667 240 124 8 305 530 309 522 1.77e-16 82.8
Msa0532790 AT3G58120.2 48.148 81 42 0 366 446 200 280 7.76e-16 78.6
Msa0532790 AT2G42380.5 48.148 81 42 0 366 446 184 264 1.65e-15 77.4
Msa0532790 AT3G58120.1 48.148 81 42 0 366 446 200 280 2.59e-15 77.8
Msa0532790 AT2G42380.2 48.148 81 42 0 366 446 184 264 4.84e-15 76.6

Find 156 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTCAATGCATTAAATTAA+TGG 0.214107 4_1:+7330178 Msa0532790:three_prime_UTR
TTTGGGTTATTTCAGGATAT+TGG 0.231921 4_1:+7327498 Msa0532790:intron
TGCACAACTTACTTTGTTGC+AGG 0.290633 4_1:+7327624 Msa0532790:CDS
ATTTCAGGATATTGGCTAAT+AGG 0.291092 4_1:+7327506 Msa0532790:intron
TGGTGAAAAGGGAAACTAAT+TGG 0.304245 4_1:+7326869 Msa0532790:CDS
ATTATTTATTTACTGATTCA+TGG 0.307626 4_1:+7326285 Msa0532790:exon
GTTGATGTCGCCTGGTAATT+CGG 0.329202 4_1:+7327272 Msa0532790:CDS
GGCATTTGCGGCCGTGAAAC+CGG 0.329642 4_1:-7326517 None:intergenic
GAAGTATTCCTTAGTTGTTA+TGG 0.341942 4_1:+7329898 Msa0532790:three_prime_UTR
TCTAACAGTGATATTCCATT+TGG 0.349388 4_1:+7326769 Msa0532790:CDS
ATCTGAGAGTAAGGTGAAAT+AGG 0.358249 4_1:-7326481 None:intergenic
TTGAAGATGCCGCCTTCGCC+TGG 0.360481 4_1:+7327246 Msa0532790:CDS
TGCTGTTGTTGGAACATCAT+AGG 0.362730 4_1:-7329707 None:intergenic
GCTGATGCTGATGCTGTTGT+TGG 0.363621 4_1:-7329718 None:intergenic
TACTGCTAAAGTTTGGTGTT+TGG 0.369214 4_1:+7328468 Msa0532790:CDS
TTAAATATAAGACGGGAATC+AGG 0.371866 4_1:-7329977 None:intergenic
CCAGTAGGGGCTGTCTGTGC+TGG 0.377397 4_1:+7328437 Msa0532790:CDS
GGAACTTCAACTCACTATTC+TGG 0.380487 4_1:-7327942 None:intergenic
GGCGGAAATGCCGAAGGAGC+AGG 0.383516 4_1:-7326237 None:intergenic
GGGATCTGGTGTGGGTGTGA+TGG 0.386572 4_1:-7326457 None:intergenic
GCCAGAGTTGAAGAAAATTA+TGG 0.386981 4_1:+7327350 Msa0532790:CDS
TTATATTTACTGCTAAAGTT+TGG 0.387031 4_1:+7328461 Msa0532790:CDS
TGGTGATAATCGCGATGATT+TGG 0.391984 4_1:+7327017 Msa0532790:CDS
AAAGAATGAGTTAAAGCAAT+AGG 0.398703 4_1:+7329802 Msa0532790:CDS
CTAATTCGTCGGTGGTGAAA+AGG 0.403499 4_1:+7326857 Msa0532790:CDS
TTGATGTCGCCTGGTAATTC+GGG 0.403911 4_1:+7327273 Msa0532790:CDS
TTGCTACAGCTGAGCTGAAT+GGG 0.408125 4_1:+7329639 Msa0532790:CDS
AATGAGTTAAAGCAATAGGT+TGG 0.415095 4_1:+7329806 Msa0532790:exon
ACTTTGTGACCGAGCTAGAT+AGG 0.419082 4_1:-7329942 None:intergenic
GAAGGGAATAAGAGAAGTGC+AGG 0.419487 4_1:+7327138 Msa0532790:CDS
CCTGTTGTTCCATGGATTGA+AGG 0.422833 4_1:-7327966 None:intergenic
GATAGTATGCAGAGGAGGGA+AGG 0.429594 4_1:+7327120 Msa0532790:CDS
CTGTGTTTGCTGCTGCCAGT+AGG 0.430922 4_1:+7328422 Msa0532790:CDS
TTTGGGAATGGTGAGTTTAG+TGG 0.431644 4_1:+7327327 Msa0532790:CDS
CCTTCAATCCATGGAACAAC+AGG 0.431813 4_1:+7327966 Msa0532790:CDS
CAGCACCTCTTAGCCCGCTT+CGG 0.433321 4_1:-7327408 None:intergenic
TGTGTTTGCTGCTGCCAGTA+GGG 0.438177 4_1:+7328423 Msa0532790:CDS
ATCTGGTGTGGGTGTGATGG+TGG 0.439152 4_1:-7326454 None:intergenic
AAATAGGTGGGATCTGGTGT+GGG 0.439432 4_1:-7326465 None:intergenic
CTTTAACTCATTCTTTGAGT+TGG 0.442907 4_1:-7329795 None:intergenic
ACAACAAATGAACAATCATA+TGG 0.450801 4_1:+7326345 Msa0532790:CDS
CCGCCGTTGATTCCGCTTCG+AGG 0.450965 4_1:+7326817 Msa0532790:CDS
GAGATAAGCGCCTGCTCCTT+CGG 0.451935 4_1:+7326227 Msa0532790:five_prime_UTR
GTACTATGCGACGGCATTTG+CGG 0.455092 4_1:-7326529 None:intergenic
TGCGGAATCATGCAGTTAGA+AGG 0.459177 4_1:-7329671 None:intergenic
AGAGTAGTGTTAATGAGAGT+GGG 0.468643 4_1:+7327097 Msa0532790:CDS
GTGGGGATAGTATGCAGAGG+AGG 0.468795 4_1:+7327115 Msa0532790:CDS
AAGGTGAAATAGGTGGGATC+TGG 0.472913 4_1:-7326471 None:intergenic
GAAGTTCCGCCTTCAATCCA+TGG 0.476046 4_1:+7327957 Msa0532790:CDS
TAATTCGTCGGTGGTGAAAA+GGG 0.477108 4_1:+7326858 Msa0532790:CDS
AAAGCAATAGGTTGGGTTGG+AGG 0.477774 4_1:+7329814 Msa0532790:exon
TCATCCACAACTTCACCTTC+CGG 0.477852 4_1:-7326928 None:intergenic
GAAATAGGTGGGATCTGGTG+TGG 0.483403 4_1:-7326466 None:intergenic
ATGAGTTAAAGCAATAGGTT+GGG 0.485556 4_1:+7329807 Msa0532790:exon
TTTAGTTTGGAGTTTGGGAA+TGG 0.489226 4_1:+7327315 Msa0532790:CDS
CCTGGAGGGTTGATGTCGCC+TGG 0.490408 4_1:+7327264 Msa0532790:CDS
ATAGTATGCAGAGGAGGGAA+GGG 0.491140 4_1:+7327121 Msa0532790:CDS
TGATTATTCATCTGAGAGTA+AGG 0.492306 4_1:-7326490 None:intergenic
GAGAGTAGTGTTAATGAGAG+TGG 0.492697 4_1:+7327096 Msa0532790:CDS
GGTGAAAAGGGAAACTAATT+GGG 0.494990 4_1:+7326870 Msa0532790:CDS
GCAAGTGGAACGAAGACTAA+TGG 0.496328 4_1:+7327048 Msa0532790:CDS
TAAAGTTTGGTGTTTGGCCA+AGG 0.497313 4_1:+7328474 Msa0532790:CDS
GGATCATGCTGACGTTTCCA+TGG 0.501467 4_1:+7326660 Msa0532790:CDS
ATTGCTACAGCTGAGCTGAA+TGG 0.502115 4_1:+7329638 Msa0532790:CDS
CGTTGATTCCGCTTCGAGGA+AGG 0.502885 4_1:+7326821 Msa0532790:CDS
CTCCTATGAACCTACCGCCT+TGG 0.503147 4_1:-7328491 None:intergenic
TCGCCTGGTAATTCGGGTGA+TGG 0.504421 4_1:+7327279 Msa0532790:CDS
TGGGTTGGAGGTTGTGCAGA+CGG 0.507001 4_1:+7329826 Msa0532790:three_prime_UTR
GCATTTGCGGCCGTGAAACC+GGG 0.507657 4_1:-7326516 None:intergenic
TTGGGAATGGTGAGTTTAGT+GGG 0.509815 4_1:+7327328 Msa0532790:CDS
TGCTATGGCTGATCCGAAGC+GGG 0.511052 4_1:+7327395 Msa0532790:CDS
AGCAGAAATCAAAGAGGAGG+TGG 0.514151 4_1:+7326427 Msa0532790:CDS
TGGGGATAGTATGCAGAGGA+GGG 0.518255 4_1:+7327116 Msa0532790:CDS
ACAACGAAGGTTGAAAAGAA+AGG 0.523815 4_1:-7326192 None:intergenic
CGCCTGGTAATTCGGGTGAT+GGG 0.525812 4_1:+7327280 Msa0532790:CDS
TGGTGTTTGGCCAAGGCGGT+AGG 0.528627 4_1:+7328481 Msa0532790:CDS
CTGATCCGAAGCGGGCTAAG+AGG 0.529672 4_1:+7327403 Msa0532790:CDS
GGGAATAAGAGAAGTGCAGG+AGG 0.532585 4_1:+7327141 Msa0532790:CDS
GTTAAAGCAATAGGTTGGGT+TGG 0.533030 4_1:+7329811 Msa0532790:exon
ATAATCAGATCCCGGTTTCA+CGG 0.535436 4_1:+7326506 Msa0532790:CDS
CTGAACCTTGTGTTCTAGCT+CGG 0.538171 4_1:-7327572 None:intergenic
TTCCCATCACCCGAATTACC+AGG 0.539473 4_1:-7327282 None:intergenic
GCTTACGACCATAACAACTA+AGG 0.542427 4_1:-7329906 None:intergenic
GTTGATTCCGCTTCGAGGAA+GGG 0.544219 4_1:+7326822 Msa0532790:CDS
CACCGACTACGAGACACTAT+AGG 0.545909 4_1:+7327172 Msa0532790:CDS
AGTGACGTCACGATCTTCCA+TGG 0.547547 4_1:-7326677 None:intergenic
GACATCAACCCTCCAGGCGA+AGG 0.547782 4_1:-7327258 None:intergenic
TGAGGGACTAATTGAAGCTA+AGG 0.548511 4_1:+7330157 Msa0532790:three_prime_UTR
AATCTTCAGTCTTTGAACTT+CGG 0.549225 4_1:-7329618 None:intergenic
AAGAAATCGTTGTCGCCGGA+AGG 0.549807 4_1:+7326913 Msa0532790:CDS
CCAGCACAGACAGCCCCTAC+TGG 0.550071 4_1:-7328437 None:intergenic
GAAGGGTTTCTAGCAGCAAA+CGG 0.556191 4_1:-7326718 None:intergenic
ACACTATAGGAGTGTTTCGA+TGG 0.557671 4_1:+7327185 Msa0532790:CDS
GCTGTTGTTGGAACATCATA+GGG 0.558278 4_1:-7329706 None:intergenic
GTGTTTGCTGCTGCCAGTAG+GGG 0.558283 4_1:+7328424 Msa0532790:CDS
CATCAACAACAGCAGCAGAA+TGG 0.558598 4_1:+7329767 Msa0532790:CDS
ATCAACCCTCCAGGCGAAGG+CGG 0.559345 4_1:-7327255 None:intergenic
TTCACAATGCCTATCTAGCT+CGG 0.560008 4_1:+7329933 Msa0532790:three_prime_UTR
AGATGCCGCCTTCGCCTGGA+GGG 0.564178 4_1:+7327250 Msa0532790:CDS
GAAGATTCGCGAAACGTGCA+AGG 0.565171 4_1:-7326628 None:intergenic
GAGTAGTGTTAATGAGAGTG+GGG 0.567227 4_1:+7327098 Msa0532790:CDS
CTAGCAGCAAACGGAGGTAA+CGG 0.571775 4_1:-7326709 None:intergenic
AAAACAGTAGAAAATCCAAA+TGG 0.578268 4_1:-7326784 None:intergenic
CTCCTATAGTGTCTCGTAGT+CGG 0.582206 4_1:-7327174 None:intergenic
TGAGAGTAAGGTGAAATAGG+TGG 0.582251 4_1:-7326478 None:intergenic
CCAGGCGACATCAACCCTCC+AGG 0.583954 4_1:-7327264 None:intergenic
CTTCCTCGAAGCGGAATCAA+CGG 0.584470 4_1:-7326820 None:intergenic
CATTTCCGAGCTAGAACACA+AGG 0.584550 4_1:+7327567 Msa0532790:CDS
AAGATGCCGCCTTCGCCTGG+AGG 0.587385 4_1:+7327249 Msa0532790:CDS
GAGAGTAAGGTGAAATAGGT+GGG 0.588611 4_1:-7326477 None:intergenic
GCAACTTCCCTTCCTCGAAG+CGG 0.591727 4_1:-7326829 None:intergenic
AACGTGCAAGGGCTGAGAGG+CGG 0.597136 4_1:-7326616 None:intergenic
GGAGAAGAAATCGTTGTCGC+CGG 0.600332 4_1:+7326909 Msa0532790:CDS
TCAGATGAATAATCAGATCC+CGG 0.607400 4_1:+7326498 Msa0532790:CDS
AGAGTGGGGATAGTATGCAG+AGG 0.609195 4_1:+7327112 Msa0532790:CDS
GTCAGCATGATCCGACGTGG+AGG 0.611432 4_1:-7326650 None:intergenic
AGTAGCAGAAATCAAAGAGG+AGG 0.611642 4_1:+7326424 Msa0532790:CDS
TGATGCATTAAACTGTGGTA+TGG 0.613604 4_1:-7326377 None:intergenic
GATTTGGATAGTAGAGCAAG+TGG 0.614449 4_1:+7327033 Msa0532790:CDS
GATCGTGTGTGGGAAGGTGT+AGG 0.618822 4_1:-7326556 None:intergenic
TTGGGAATATAGTAATGTAG+AGG 0.618930 4_1:+7326888 Msa0532790:CDS
AAAACTTGCTGAGATTGCTA+TGG 0.624523 4_1:+7327380 Msa0532790:CDS
GATTGAAAGAAATACCATCT+CGG 0.625004 4_1:-7327996 None:intergenic
GAGAGTGATCGTGTGTGGGA+AGG 0.627896 4_1:-7326562 None:intergenic
TTGTCTAATAGCTCTGAATG+AGG 0.632805 4_1:+7329586 Msa0532790:intron
GTTGAGAGAGTGATCGTGTG+TGG 0.632845 4_1:-7326567 None:intergenic
TGTATGCAGAGAGATTCAGT+TGG 0.633937 4_1:+7327910 Msa0532790:intron
TTCGGGTGATGGGAATTCAG+TGG 0.634358 4_1:+7327290 Msa0532790:CDS
TGCTACAGCTGAGCTGAATG+GGG 0.641201 4_1:+7329640 Msa0532790:CDS
AGTTGCTAAACCTAATTCGT+CGG 0.641686 4_1:+7326846 Msa0532790:CDS
GTTAGTAGCAGAAATCAAAG+AGG 0.645697 4_1:+7326421 Msa0532790:CDS
GTTGTTCCATGGATTGAAGG+CGG 0.649555 4_1:-7327963 None:intergenic
TGCTAAACCTAATTCGTCGG+TGG 0.650048 4_1:+7326849 Msa0532790:CDS
CGAAACGTGCAAGGGCTGAG+AGG 0.651618 4_1:-7326619 None:intergenic
GTAGGACTTGTACTATGCGA+CGG 0.653735 4_1:-7326538 None:intergenic
GCAACAACATTGAAAAGCGG+CGG 0.654032 4_1:-7326255 None:intergenic
TTGCTATGGCTGATCCGAAG+CGG 0.654077 4_1:+7327394 Msa0532790:CDS
GAATATCACTGTTAGAACGC+CGG 0.656847 4_1:-7326762 None:intergenic
TCGCGAATCTTCCTCCACGT+CGG 0.657479 4_1:+7326639 Msa0532790:CDS
AAAAGCGGCGGAAATGCCGA+AGG 0.659034 4_1:-7326243 None:intergenic
CAACAGGCAAAACTCCGAGA+TGG 0.660037 4_1:+7327982 Msa0532790:CDS
TGCCGCCGAGAAAATCTCAC+CGG 0.660992 4_1:+7326743 Msa0532790:CDS
AAGTTGTGCAGAAAGTGTAG+TGG 0.665732 4_1:-7327611 None:intergenic
AAGATTCGCGAAACGTGCAA+GGG 0.666107 4_1:-7326627 None:intergenic
TTGAGAGAGTGATCGTGTGT+GGG 0.674945 4_1:-7326566 None:intergenic
ACAGCAACAACATTGAAAAG+CGG 0.677679 4_1:-7326258 None:intergenic
GTCGCCGGAAGGTGAAGTTG+TGG 0.681642 4_1:+7326924 Msa0532790:CDS
AGTGGAACGAAGACTAATGG+TGG 0.685995 4_1:+7327051 Msa0532790:CDS
ATAGGGTTGACAGAATGTTG+CGG 0.688253 4_1:-7329689 None:intergenic
AACGTCAGCATGATCCGACG+TGG 0.690918 4_1:-7326653 None:intergenic
AGTTTGGTGTTTGGCCAAGG+CGG 0.692491 4_1:+7328477 Msa0532790:CDS
CCTCGAAGCGGAATCAACGG+CGG 0.693770 4_1:-7326817 None:intergenic
GGGTTTCTAGCAGCAAACGG+AGG 0.701318 4_1:-7326715 None:intergenic
AGATGACTATTAGTACTACA+CGG 0.704110 4_1:-7326080 None:intergenic
CGCTACTGTGAAGACAACGA+AGG 0.705455 4_1:-7326205 None:intergenic
TGTGATGATGCATTAAACTG+TGG 0.744086 4_1:-7326382 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAATTCAAATTAATATTA+AGG - chr4_1:7328778-7328797 None:intergenic 10.0%
!!! ATTATTTATTTACTGATTCA+TGG + chr4_1:7326285-7326304 Msa0532790:exon 15.0%
!! TCTTACATTAATAAAATCTA+TGG - chr4_1:7328121-7328140 None:intergenic 15.0%
!!! TAGATTTTATTAATGTAAGA+AGG + chr4_1:7328121-7328140 Msa0532790:intron 15.0%
!!! AGATTTTATTAATGTAAGAA+GGG + chr4_1:7328122-7328141 Msa0532790:intron 15.0%
!!! TCATAGAATTTTTAAAAATG+TGG + chr4_1:7328191-7328210 Msa0532790:intron 15.0%
!!! ATGTTTTTCTTTTTTTGAAT+CGG - chr4_1:7328657-7328676 None:intergenic 15.0%
!! AAATTAATATTAAGGAAAAC+TGG - chr4_1:7328770-7328789 None:intergenic 15.0%
!! TTTGAACATGAATTAATAAA+GGG - chr4_1:7328985-7329004 None:intergenic 15.0%
!! ATTTGAACATGAATTAATAA+AGG - chr4_1:7328986-7329005 None:intergenic 15.0%
!!! CTATATTTTAAATATAAGAC+GGG - chr4_1:7329987-7330006 None:intergenic 15.0%
!!! GCTATATTTTAAATATAAGA+CGG - chr4_1:7329988-7330007 None:intergenic 15.0%
!!! TTTTTCTGCTTATATGAATT+TGG + chr4_1:7326954-7326973 Msa0532790:CDS 20.0%
!! TTTAGTTAGTATTGTCAATA+TGG + chr4_1:7327450-7327469 Msa0532790:intron 20.0%
!!! ATTTTGACTTGGATATTTTT+TGG + chr4_1:7327480-7327499 Msa0532790:intron 20.0%
!!! TTTTGACTTGGATATTTTTT+GGG + chr4_1:7327481-7327500 Msa0532790:intron 20.0%
!!! TATTATAGCTTCTTTGTTTT+CGG + chr4_1:7327788-7327807 Msa0532790:intron 20.0%
!!! AAATCATGTTGATAATGTTT+TGG + chr4_1:7327811-7327830 Msa0532790:intron 20.0%
!!! AATCATGTTGATAATGTTTT+GGG + chr4_1:7327812-7327831 Msa0532790:intron 20.0%
!!! TTTCAATCTCTCATTTTTTA+AGG + chr4_1:7328020-7328039 Msa0532790:intron 20.0%
!!! GATTTTATTAATGTAAGAAG+GGG + chr4_1:7328123-7328142 Msa0532790:intron 20.0%
!!! ATTTTATTAATGTAAGAAGG+GGG + chr4_1:7328124-7328143 Msa0532790:intron 20.0%
!!! AATTTTTAAAAATGTGGTGA+GGG + chr4_1:7328197-7328216 Msa0532790:intron 20.0%
!! TTATATTTACTGCTAAAGTT+TGG + chr4_1:7328461-7328480 Msa0532790:CDS 20.0%
!!! CTATGAGAAAAATCATATTT+TGG + chr4_1:7328893-7328912 Msa0532790:intron 20.0%
!! TAATTCATGTTCAAATTTCT+TGG + chr4_1:7328990-7329009 Msa0532790:intron 20.0%
!! AATTCATGTTCAAATTTCTT+GGG + chr4_1:7328991-7329010 Msa0532790:intron 20.0%
!! TTTGTAGTTTCATAAAATCA+CGG + chr4_1:7329138-7329157 Msa0532790:intron 20.0%
!! ATCCTATTATAACATCTATT+TGG + chr4_1:7329218-7329237 Msa0532790:intron 20.0%
!! AACCAAATAGATGTTATAAT+AGG - chr4_1:7329223-7329242 None:intergenic 20.0%
!! AAACATAATTAGCTATGTAA+AGG - chr4_1:7329299-7329318 None:intergenic 20.0%
!!! GTGTTACAAACTTTATTTTT+TGG + chr4_1:7330087-7330106 Msa0532790:three_prime_UTR 20.0%
!!! TGTTGTTTTTATATTCAAAC+TGG + chr4_1:7330126-7330145 Msa0532790:three_prime_UTR 20.0%
! ACAACAAATGAACAATCATA+TGG + chr4_1:7326345-7326364 Msa0532790:CDS 25.0%
! AAAACAGTAGAAAATCCAAA+TGG - chr4_1:7326787-7326806 None:intergenic 25.0%
! AATTAACGATGATAAAAACG+CGG + chr4_1:7326990-7327009 Msa0532790:CDS 25.0%
!!! TTTCGATGGATAGTTTTATT+GGG + chr4_1:7327199-7327218 Msa0532790:CDS 25.0%
!!! GATATTTTTTGGGTTATTTC+AGG + chr4_1:7327491-7327510 Msa0532790:intron 25.0%
!! TGCAACTCATTTTATGTTTA+TGG + chr4_1:7328063-7328082 Msa0532790:intron 25.0%
!!! GAATTTTTAAAAATGTGGTG+AGG + chr4_1:7328196-7328215 Msa0532790:intron 25.0%
! AAACAATTGAACATCAGTAA+TGG - chr4_1:7328955-7328974 None:intergenic 25.0%
! ATTCATGTTCAAATTTCTTG+GGG + chr4_1:7328992-7329011 Msa0532790:intron 25.0%
!! TTTTCTTTATGTAGGTTACT+TGG + chr4_1:7329045-7329064 Msa0532790:intron 25.0%
! TATGTTTGTAAGAGTTACTA+CGG + chr4_1:7329312-7329331 Msa0532790:intron 25.0%
!! TTGTTGTTGATGAGATATTA+TGG - chr4_1:7329458-7329477 None:intergenic 25.0%
! AAAGAATGAGTTAAAGCAAT+AGG + chr4_1:7329802-7329821 Msa0532790:CDS 25.0%
! GGTTCAATGCATTAAATTAA+TGG + chr4_1:7330178-7330197 Msa0532790:three_prime_UTR 25.0%
TGATTATTCATCTGAGAGTA+AGG - chr4_1:7326493-7326512 None:intergenic 30.0%
TCTAACAGTGATATTCCATT+TGG + chr4_1:7326769-7326788 Msa0532790:CDS 30.0%
TTGGGAATATAGTAATGTAG+AGG + chr4_1:7326888-7326907 Msa0532790:CDS 30.0%
!!! GTTTCGATGGATAGTTTTAT+TGG + chr4_1:7327198-7327217 Msa0532790:CDS 30.0%
GTTAGTATTGTCAATATGGA+TGG + chr4_1:7327454-7327473 Msa0532790:intron 30.0%
!!! ATGGATGGTTAATTTTGACT+TGG + chr4_1:7327469-7327488 Msa0532790:intron 30.0%
! TTTGGGTTATTTCAGGATAT+TGG + chr4_1:7327498-7327517 Msa0532790:intron 30.0%
! ATTTCAGGATATTGGCTAAT+AGG + chr4_1:7327506-7327525 Msa0532790:intron 30.0%
!!! TGTGAATGCATGTTTTAGTT+TGG + chr4_1:7327666-7327685 Msa0532790:intron 30.0%
TAAGCCTTCATTTGATATTG+TGG + chr4_1:7327716-7327735 Msa0532790:intron 30.0%
TTAACTTCAACTCACTATTC+TGG - chr4_1:7327843-7327862 None:intergenic 30.0%
CTCTGCATACACAAAAAAAT+AGG - chr4_1:7327901-7327920 None:intergenic 30.0%
GATTGAAAGAAATACCATCT+CGG - chr4_1:7327999-7328018 None:intergenic 30.0%
CATTCATAATACAAGCAAGT+AGG - chr4_1:7328291-7328310 None:intergenic 30.0%
CTACTTGCTTGTATTATGAA+TGG + chr4_1:7328289-7328308 Msa0532790:intron 30.0%
ATTCCGTTATTTACCTCAAA+AGG - chr4_1:7328332-7328351 None:intergenic 30.0%
! TTCATAGGAGTGTGTTAATT+AGG + chr4_1:7328504-7328523 Msa0532790:intron 30.0%
CGGAGAAAAACATAAAACAA+AGG - chr4_1:7328611-7328630 None:intergenic 30.0%
!! TGTAGCTTTTTCCAAAATCA+CGG - chr4_1:7329117-7329136 None:intergenic 30.0%
TTCATAGTCATCTTGATTGA+CGG - chr4_1:7329191-7329210 None:intergenic 30.0%
!!! TTTTTGGAAAAAAGCATCCT+GGG + chr4_1:7329335-7329354 Msa0532790:intron 30.0%
AATCTTCAGTCTTTGAACTT+CGG - chr4_1:7329621-7329640 None:intergenic 30.0%
CTTTAACTCATTCTTTGAGT+TGG - chr4_1:7329798-7329817 None:intergenic 30.0%
AATGAGTTAAAGCAATAGGT+TGG + chr4_1:7329806-7329825 Msa0532790:exon 30.0%
ATGAGTTAAAGCAATAGGTT+GGG + chr4_1:7329807-7329826 Msa0532790:exon 30.0%
! GAAGTATTCCTTAGTTGTTA+TGG + chr4_1:7329898-7329917 Msa0532790:three_prime_UTR 30.0%
TTAAATATAAGACGGGAATC+AGG - chr4_1:7329980-7329999 None:intergenic 30.0%
ACAACGAAGGTTGAAAAGAA+AGG - chr4_1:7326195-7326214 None:intergenic 35.0%
ACAGCAACAACATTGAAAAG+CGG - chr4_1:7326261-7326280 None:intergenic 35.0%
TGATGCATTAAACTGTGGTA+TGG - chr4_1:7326380-7326399 None:intergenic 35.0%
! TGTGATGATGCATTAAACTG+TGG - chr4_1:7326385-7326404 None:intergenic 35.0%
GTTAGTAGCAGAAATCAAAG+AGG + chr4_1:7326421-7326440 Msa0532790:CDS 35.0%
ATCTGAGAGTAAGGTGAAAT+AGG - chr4_1:7326484-7326503 None:intergenic 35.0%
TCAGATGAATAATCAGATCC+CGG + chr4_1:7326498-7326517 Msa0532790:CDS 35.0%
AGTTGCTAAACCTAATTCGT+CGG + chr4_1:7326846-7326865 Msa0532790:CDS 35.0%
TGGTGAAAAGGGAAACTAAT+TGG + chr4_1:7326869-7326888 Msa0532790:CDS 35.0%
GGTGAAAAGGGAAACTAATT+GGG + chr4_1:7326870-7326889 Msa0532790:CDS 35.0%
AGAGTAGTGTTAATGAGAGT+GGG + chr4_1:7327097-7327116 Msa0532790:CDS 35.0%
!! GAATTCAGTGGCTTTTAGTT+TGG + chr4_1:7327302-7327321 Msa0532790:CDS 35.0%
!!! TGGCTTTTAGTTTGGAGTTT+GGG + chr4_1:7327310-7327329 Msa0532790:CDS 35.0%
!! TTTAGTTTGGAGTTTGGGAA+TGG + chr4_1:7327315-7327334 Msa0532790:CDS 35.0%
GCCAGAGTTGAAGAAAATTA+TGG + chr4_1:7327350-7327369 Msa0532790:CDS 35.0%
! GCCATAATTTTCTTCAACTC+TGG - chr4_1:7327354-7327373 None:intergenic 35.0%
!! AAAACTTGCTGAGATTGCTA+TGG + chr4_1:7327380-7327399 Msa0532790:CDS 35.0%
GTTGAAGTTAACACAATTGC+AGG + chr4_1:7327852-7327871 Msa0532790:intron 35.0%
TAATTTGGCATGCAGCAATT+TGG + chr4_1:7328148-7328167 Msa0532790:intron 35.0%
AATTTGGCATGCAGCAATTT+GGG + chr4_1:7328149-7328168 Msa0532790:intron 35.0%
GCTTGTATTATGAATGGAGT+TGG + chr4_1:7328295-7328314 Msa0532790:intron 35.0%
!!! GTGCAGTTTTTTTGGATACT+TGG + chr4_1:7328387-7328406 Msa0532790:intron 35.0%
!! TACTGCTAAAGTTTGGTGTT+TGG + chr4_1:7328468-7328487 Msa0532790:CDS 35.0%
!! AGGTGCATAACAGTTGTTTT+TGG + chr4_1:7328524-7328543 Msa0532790:intron 35.0%
!!! GGTGCATAACAGTTGTTTTT+GGG + chr4_1:7328525-7328544 Msa0532790:intron 35.0%
!!! GTGCATAACAGTTGTTTTTG+GGG + chr4_1:7328526-7328545 Msa0532790:intron 35.0%
GGTTGTCTTCTTTGAACTTT+AGG + chr4_1:7328557-7328576 Msa0532790:intron 35.0%
ACACTTGGTCATACAAACTT+TGG - chr4_1:7328722-7328741 None:intergenic 35.0%
AAAGTTTGTATGACCAAGTG+TGG + chr4_1:7328721-7328740 Msa0532790:intron 35.0%
ATGAAACTTCTAACCACACT+TGG - chr4_1:7328737-7328756 None:intergenic 35.0%
TTAAGTCCTCTGTTTAGCAT+TGG + chr4_1:7328806-7328825 Msa0532790:intron 35.0%
! TCTGTTTAGCATTGGAAGAT+GGG + chr4_1:7328814-7328833 Msa0532790:intron 35.0%
TATGAAATGATCATGACAGC+CGG + chr4_1:7328917-7328936 Msa0532790:intron 35.0%
! CAGGTAGCTTTTCTTTATGT+AGG + chr4_1:7329037-7329056 Msa0532790:intron 35.0%
!!! CTATTTGGTTTTCCCTCAAA+TGG + chr4_1:7329233-7329252 Msa0532790:intron 35.0%
TATCGTCAGTTTCAGCAAAA+GGG - chr4_1:7329266-7329285 None:intergenic 35.0%
! GTAAGAGTTACTACGGTTTT+TGG + chr4_1:7329319-7329338 Msa0532790:intron 35.0%
!!! GTTTTTGGAAAAAAGCATCC+TGG + chr4_1:7329334-7329353 Msa0532790:intron 35.0%
TCATTCAGAGCTATTAGACA+AGG - chr4_1:7329587-7329606 None:intergenic 35.0%
!! TTGTCTAATAGCTCTGAATG+AGG + chr4_1:7329586-7329605 Msa0532790:intron 35.0%
AGTAGCAGAAATCAAAGAGG+AGG + chr4_1:7326424-7326443 Msa0532790:CDS 40.0%
GAGAGTAAGGTGAAATAGGT+GGG - chr4_1:7326480-7326499 None:intergenic 40.0%
TGAGAGTAAGGTGAAATAGG+TGG - chr4_1:7326481-7326500 None:intergenic 40.0%
ATAATCAGATCCCGGTTTCA+CGG + chr4_1:7326506-7326525 Msa0532790:CDS 40.0%
GAGTCGAGAGAGAAAAAAGA+CGG - chr4_1:7326592-7326611 None:intergenic 40.0%
GAATATCACTGTTAGAACGC+CGG - chr4_1:7326765-7326784 None:intergenic 40.0%
TAATTCGTCGGTGGTGAAAA+GGG + chr4_1:7326858-7326877 Msa0532790:CDS 40.0%
TGGTGATAATCGCGATGATT+TGG + chr4_1:7327017-7327036 Msa0532790:CDS 40.0%
GATTTGGATAGTAGAGCAAG+TGG + chr4_1:7327033-7327052 Msa0532790:CDS 40.0%
GAGAGTAGTGTTAATGAGAG+TGG + chr4_1:7327096-7327115 Msa0532790:CDS 40.0%
GAGTAGTGTTAATGAGAGTG+GGG + chr4_1:7327098-7327117 Msa0532790:CDS 40.0%
!! ACACTATAGGAGTGTTTCGA+TGG + chr4_1:7327185-7327204 Msa0532790:CDS 40.0%
!!! GTGGCTTTTAGTTTGGAGTT+TGG + chr4_1:7327309-7327328 Msa0532790:CDS 40.0%
TTTGGGAATGGTGAGTTTAG+TGG + chr4_1:7327327-7327346 Msa0532790:CDS 40.0%
TTGGGAATGGTGAGTTTAGT+GGG + chr4_1:7327328-7327347 Msa0532790:CDS 40.0%
! AAGTTGTGCAGAAAGTGTAG+TGG - chr4_1:7327614-7327633 None:intergenic 40.0%
TGCACAACTTACTTTGTTGC+AGG + chr4_1:7327624-7327643 Msa0532790:CDS 40.0%
ACAACTTACTTTGTTGCAGG+TGG + chr4_1:7327627-7327646 Msa0532790:intron 40.0%
CAACTTACTTTGTTGCAGGT+GGG + chr4_1:7327628-7327647 Msa0532790:intron 40.0%
! TGGCGCGTTTTGTAAAATTG+TGG + chr4_1:7327736-7327755 Msa0532790:intron 40.0%
! CGCGTTTTGTAAAATTGTGG+TGG + chr4_1:7327739-7327758 Msa0532790:intron 40.0%
TGTATGCAGAGAGATTCAGT+TGG + chr4_1:7327910-7327929 Msa0532790:intron 40.0%
GGAACTTCAACTCACTATTC+TGG - chr4_1:7327945-7327964 None:intergenic 40.0%
ATGTAAGAAGGGGGCTAATT+TGG + chr4_1:7328133-7328152 Msa0532790:intron 40.0%
!!! GGGCCTTTTGAGGTAAATAA+CGG + chr4_1:7328326-7328345 Msa0532790:intron 40.0%
!! TAAAGTTTGGTGTTTGGCCA+AGG + chr4_1:7328474-7328493 Msa0532790:CDS 40.0%
AGGATAGCCATATCACTGTA+TGG - chr4_1:7328591-7328610 None:intergenic 40.0%
AAGAATGTAGATCCCTGACA+TGG + chr4_1:7328694-7328713 Msa0532790:intron 40.0%
CAAACTTTGGTACCATGTCA+GGG - chr4_1:7328709-7328728 None:intergenic 40.0%
ACAAACTTTGGTACCATGTC+AGG - chr4_1:7328710-7328729 None:intergenic 40.0%
CATCTTCCAATGCTAAACAG+AGG - chr4_1:7328815-7328834 None:intergenic 40.0%
! CTCTGTTTAGCATTGGAAGA+TGG + chr4_1:7328813-7328832 Msa0532790:intron 40.0%
ATGAAATGATCATGACAGCC+GGG + chr4_1:7328918-7328937 Msa0532790:intron 40.0%
! GTAATGGAATCAGTAAACCC+CGG - chr4_1:7328939-7328958 None:intergenic 40.0%
CATGTTCAAATTTCTTGGGG+AGG + chr4_1:7328995-7329014 Msa0532790:intron 40.0%
CCTGACTCAAGATATTACCT+AGG - chr4_1:7329021-7329040 None:intergenic 40.0%
CCTAGGTAATATCTTGAGTC+AGG + chr4_1:7329018-7329037 Msa0532790:intron 40.0%
!! TAGGTTACTTGGTGCATGTT+TGG + chr4_1:7329056-7329075 Msa0532790:intron 40.0%
GTTTGGATCAACAGTGAGAT+TGG + chr4_1:7329073-7329092 Msa0532790:intron 40.0%
CAGTGAGATTGGCAGAATTA+CGG + chr4_1:7329084-7329103 Msa0532790:intron 40.0%
AAGGGAAAACGTCCATTTGA+GGG - chr4_1:7329248-7329267 None:intergenic 40.0%
AAAGGGAAAACGTCCATTTG+AGG - chr4_1:7329249-7329268 None:intergenic 40.0%
GTATCGTCAGTTTCAGCAAA+AGG - chr4_1:7329267-7329286 None:intergenic 40.0%
GAAAGTAGATGCTGAGTAGT+TGG + chr4_1:7329357-7329376 Msa0532790:intron 40.0%
ATAGGGTTGACAGAATGTTG+CGG - chr4_1:7329692-7329711 None:intergenic 40.0%
GCTGTTGTTGGAACATCATA+GGG - chr4_1:7329709-7329728 None:intergenic 40.0%
TGCTGTTGTTGGAACATCAT+AGG - chr4_1:7329710-7329729 None:intergenic 40.0%
! GTTAAAGCAATAGGTTGGGT+TGG + chr4_1:7329811-7329830 Msa0532790:exon 40.0%
GCTTACGACCATAACAACTA+AGG - chr4_1:7329909-7329928 None:intergenic 40.0%
TTCACAATGCCTATCTAGCT+CGG + chr4_1:7329933-7329952 Msa0532790:three_prime_UTR 40.0%
!!! TTCAAACTGGTTTTGTCGTG+AGG + chr4_1:7330139-7330158 Msa0532790:three_prime_UTR 40.0%
!!! TCAAACTGGTTTTGTCGTGA+GGG + chr4_1:7330140-7330159 Msa0532790:three_prime_UTR 40.0%
TGAGGGACTAATTGAAGCTA+AGG + chr4_1:7330157-7330176 Msa0532790:three_prime_UTR 40.0%
GCAACAACATTGAAAAGCGG+CGG - chr4_1:7326258-7326277 None:intergenic 45.0%
AGCAGAAATCAAAGAGGAGG+TGG + chr4_1:7326427-7326446 Msa0532790:CDS 45.0%
AAATAGGTGGGATCTGGTGT+GGG - chr4_1:7326468-7326487 None:intergenic 45.0%
AAGGTGAAATAGGTGGGATC+TGG - chr4_1:7326474-7326493 None:intergenic 45.0%
GTAGGACTTGTACTATGCGA+CGG - chr4_1:7326541-7326560 None:intergenic 45.0%
TTGAGAGAGTGATCGTGTGT+GGG - chr4_1:7326569-7326588 None:intergenic 45.0%
AAGATTCGCGAAACGTGCAA+GGG - chr4_1:7326630-7326649 None:intergenic 45.0%
!! GAAGGGTTTCTAGCAGCAAA+CGG - chr4_1:7326721-7326740 None:intergenic 45.0%
TGCTAAACCTAATTCGTCGG+TGG + chr4_1:7326849-7326868 Msa0532790:CDS 45.0%
! CTTTTCACCACCGACGAATT+AGG - chr4_1:7326859-7326878 None:intergenic 45.0%
CTAATTCGTCGGTGGTGAAA+AGG + chr4_1:7326857-7326876 Msa0532790:CDS 45.0%
TCATCCACAACTTCACCTTC+CGG - chr4_1:7326931-7326950 None:intergenic 45.0%
GATGATAAAAACGCGGCTAC+TGG + chr4_1:7326997-7327016 Msa0532790:CDS 45.0%
GCAAGTGGAACGAAGACTAA+TGG + chr4_1:7327048-7327067 Msa0532790:CDS 45.0%
AGTGGAACGAAGACTAATGG+TGG + chr4_1:7327051-7327070 Msa0532790:CDS 45.0%
ATAGTATGCAGAGGAGGGAA+GGG + chr4_1:7327121-7327140 Msa0532790:CDS 45.0%
! GAAGGGAATAAGAGAAGTGC+AGG + chr4_1:7327138-7327157 Msa0532790:CDS 45.0%
CTCCTATAGTGTCTCGTAGT+CGG - chr4_1:7327177-7327196 None:intergenic 45.0%
GTTGATGTCGCCTGGTAATT+CGG + chr4_1:7327272-7327291 Msa0532790:CDS 45.0%
TTGATGTCGCCTGGTAATTC+GGG + chr4_1:7327273-7327292 Msa0532790:CDS 45.0%
! GTATCGCATTTTGCGCTCTT+TGG - chr4_1:7327548-7327567 None:intergenic 45.0%
CATTTCCGAGCTAGAACACA+AGG + chr4_1:7327567-7327586 Msa0532790:CDS 45.0%
! CTGAACCTTGTGTTCTAGCT+CGG - chr4_1:7327575-7327594 None:intergenic 45.0%
CGCGCCACAATATCAAATGA+AGG - chr4_1:7327723-7327742 None:intergenic 45.0%
! GTTGTTCCATGGATTGAAGG+CGG - chr4_1:7327966-7327985 None:intergenic 45.0%
! CCTGTTGTTCCATGGATTGA+AGG - chr4_1:7327969-7327988 None:intergenic 45.0%
CCTTCAATCCATGGAACAAC+AGG + chr4_1:7327966-7327985 Msa0532790:CDS 45.0%
! GAGTTTTGCCTGTTGTTCCA+TGG - chr4_1:7327977-7327996 None:intergenic 45.0%
!! CGAGATAGTGGACGAAATCA+AGG + chr4_1:7328227-7328246 Msa0532790:intron 45.0%
! ACGAAATCAAGGTGCTAGCT+TGG + chr4_1:7328238-7328257 Msa0532790:intron 45.0%
CTTGGAGATGGAGTTTGGTT+AGG + chr4_1:7328256-7328275 Msa0532790:intron 45.0%
ATGAATGGAGTTGGAATCCG+AGG + chr4_1:7328304-7328323 Msa0532790:intron 45.0%
TGAATGGAGTTGGAATCCGA+GGG + chr4_1:7328305-7328324 Msa0532790:intron 45.0%
ATTTACCTCAAAAGGCCCCT+CGG - chr4_1:7328324-7328343 None:intergenic 45.0%
! ATAACGGAATCTAGAGCAGC+AGG + chr4_1:7328342-7328361 Msa0532790:intron 45.0%
AGCAGGAAGGCTCTCTAATT+GGG + chr4_1:7328359-7328378 Msa0532790:intron 45.0%
!!! GTTGTTTTTGGGGAGTCTCT+TGG + chr4_1:7328536-7328555 Msa0532790:intron 45.0%
GCTGCTACCATACAGTGATA+TGG + chr4_1:7328581-7328600 Msa0532790:intron 45.0%
CAACCCACACAAGACGTAAT+AGG - chr4_1:7328634-7328653 None:intergenic 45.0%
!! AGCATTGGAAGATGGGTTGT+AGG + chr4_1:7328821-7328840 Msa0532790:intron 45.0%
TGAAATGATCATGACAGCCG+GGG + chr4_1:7328919-7328938 Msa0532790:intron 45.0%
! ACGGTAGTCTACCGTGATTT+TGG + chr4_1:7329103-7329122 Msa0532790:intron 45.0%
ATCTTGATTGACGGTGAGTC+CGG - chr4_1:7329182-7329201 None:intergenic 45.0%
TACTCAGCATCTACTTTCCC+AGG - chr4_1:7329355-7329374 None:intergenic 45.0%
ATTGCTACAGCTGAGCTGAA+TGG + chr4_1:7329638-7329657 Msa0532790:CDS 45.0%
TTGCTACAGCTGAGCTGAAT+GGG + chr4_1:7329639-7329658 Msa0532790:CDS 45.0%
TGCGGAATCATGCAGTTAGA+AGG - chr4_1:7329674-7329693 None:intergenic 45.0%
CATCAACAACAGCAGCAGAA+TGG + chr4_1:7329767-7329786 Msa0532790:CDS 45.0%
!! AAAGCAATAGGTTGGGTTGG+AGG + chr4_1:7329814-7329833 Msa0532790:exon 45.0%
ACTTTGTGACCGAGCTAGAT+AGG - chr4_1:7329945-7329964 None:intergenic 45.0%
CGCTACTGTGAAGACAACGA+AGG - chr4_1:7326208-7326227 None:intergenic 50.0%
GAAATAGGTGGGATCTGGTG+TGG - chr4_1:7326469-7326488 None:intergenic 50.0%
GTACTATGCGACGGCATTTG+CGG - chr4_1:7326532-7326551 None:intergenic 50.0%
GTTGAGAGAGTGATCGTGTG+TGG - chr4_1:7326570-7326589 None:intergenic 50.0%
GAAGATTCGCGAAACGTGCA+AGG - chr4_1:7326631-7326650 None:intergenic 50.0%
GGATCATGCTGACGTTTCCA+TGG + chr4_1:7326660-7326679 Msa0532790:CDS 50.0%
AGTGACGTCACGATCTTCCA+TGG - chr4_1:7326680-7326699 None:intergenic 50.0%
CTAGCAGCAAACGGAGGTAA+CGG - chr4_1:7326712-7326731 None:intergenic 50.0%
! ATTTTCTCGGCGGCAGAGAA+GGG - chr4_1:7326738-7326757 None:intergenic 50.0%
! GAACGCCGGTGAGATTTTCT+CGG - chr4_1:7326751-7326770 None:intergenic 50.0%
CTTCCTCGAAGCGGAATCAA+CGG - chr4_1:7326823-7326842 None:intergenic 50.0%
! GTTGATTCCGCTTCGAGGAA+GGG + chr4_1:7326822-7326841 Msa0532790:CDS 50.0%
GGAGAAGAAATCGTTGTCGC+CGG + chr4_1:7326909-7326928 Msa0532790:CDS 50.0%
AAGAAATCGTTGTCGCCGGA+AGG + chr4_1:7326913-7326932 Msa0532790:CDS 50.0%
AGAGTGGGGATAGTATGCAG+AGG + chr4_1:7327112-7327131 Msa0532790:CDS 50.0%
TGGGGATAGTATGCAGAGGA+GGG + chr4_1:7327116-7327135 Msa0532790:CDS 50.0%
GATAGTATGCAGAGGAGGGA+AGG + chr4_1:7327120-7327139 Msa0532790:CDS 50.0%
! GGGAATAAGAGAAGTGCAGG+AGG + chr4_1:7327141-7327160 Msa0532790:CDS 50.0%
! CACCGACTACGAGACACTAT+AGG + chr4_1:7327172-7327191 Msa0532790:CDS 50.0%
TTCCCATCACCCGAATTACC+AGG - chr4_1:7327285-7327304 None:intergenic 50.0%
!! TTCGGGTGATGGGAATTCAG+TGG + chr4_1:7327290-7327309 Msa0532790:CDS 50.0%
TTGCTATGGCTGATCCGAAG+CGG + chr4_1:7327394-7327413 Msa0532790:CDS 50.0%
GAAGTTCCGCCTTCAATCCA+TGG + chr4_1:7327957-7327976 Msa0532790:CDS 50.0%
CAACAGGCAAAACTCCGAGA+TGG + chr4_1:7327982-7328001 Msa0532790:CDS 50.0%
GAGGGATGTAGACGAGATAG+TGG + chr4_1:7328215-7328234 Msa0532790:intron 50.0%
! TCAAGGTGCTAGCTTGGAGA+TGG + chr4_1:7328244-7328263 Msa0532790:intron 50.0%
! GCTAGCTTGGAGATGGAGTT+TGG + chr4_1:7328251-7328270 Msa0532790:intron 50.0%
GAATGGAGTTGGAATCCGAG+GGG + chr4_1:7328306-7328325 Msa0532790:intron 50.0%
CAGCAGGAAGGCTCTCTAAT+TGG + chr4_1:7328358-7328377 Msa0532790:intron 50.0%
AAGGCTCTCTAATTGGGTCG+CGG + chr4_1:7328365-7328384 Msa0532790:intron 50.0%
! TGTGTTTGCTGCTGCCAGTA+GGG + chr4_1:7328423-7328442 Msa0532790:CDS 50.0%
!! AGTTTGGTGTTTGGCCAAGG+CGG + chr4_1:7328477-7328496 Msa0532790:CDS 50.0%
TCCGCCTATTACGTCTTGTG+TGG + chr4_1:7328627-7328646 Msa0532790:intron 50.0%
CCCACACAAGACGTAATAGG+CGG - chr4_1:7328631-7328650 None:intergenic 50.0%
CCGCCTATTACGTCTTGTGT+GGG + chr4_1:7328628-7328647 Msa0532790:intron 50.0%
CAAATTTCTTGGGGAGGCCT+AGG + chr4_1:7329001-7329020 Msa0532790:intron 50.0%
!! GTGCTGCCATGATTTGTTGC+CGG + chr4_1:7329160-7329179 Msa0532790:intron 50.0%
GTGAGTCCGGCAACAAATCA+TGG - chr4_1:7329169-7329188 None:intergenic 50.0%
TGCTACAGCTGAGCTGAATG+GGG + chr4_1:7329640-7329659 Msa0532790:CDS 50.0%
GCTGATGCTGATGCTGTTGT+TGG - chr4_1:7329721-7329740 None:intergenic 50.0%
GAGATAAGCGCCTGCTCCTT+CGG + chr4_1:7326227-7326246 Msa0532790:five_prime_UTR 55.0%
AAAAGCGGCGGAAATGCCGA+AGG - chr4_1:7326246-7326265 None:intergenic 55.0%
ATCTGGTGTGGGTGTGATGG+TGG - chr4_1:7326457-7326476 None:intergenic 55.0%
! GATCGTGTGTGGGAAGGTGT+AGG - chr4_1:7326559-7326578 None:intergenic 55.0%
GAGAGTGATCGTGTGTGGGA+AGG - chr4_1:7326565-7326584 None:intergenic 55.0%
TCGCGAATCTTCCTCCACGT+CGG + chr4_1:7326639-7326658 Msa0532790:CDS 55.0%
AACGTCAGCATGATCCGACG+TGG - chr4_1:7326656-7326675 None:intergenic 55.0%
!! GGGTTTCTAGCAGCAAACGG+AGG - chr4_1:7326718-7326737 None:intergenic 55.0%
! GATTTTCTCGGCGGCAGAGA+AGG - chr4_1:7326739-7326758 None:intergenic 55.0%
TGCCGCCGAGAAAATCTCAC+CGG + chr4_1:7326743-7326762 Msa0532790:CDS 55.0%
!! CGTTGATTCCGCTTCGAGGA+AGG + chr4_1:7326821-7326840 Msa0532790:CDS 55.0%
GCAACTTCCCTTCCTCGAAG+CGG - chr4_1:7326832-7326851 None:intergenic 55.0%
GTGGGGATAGTATGCAGAGG+AGG + chr4_1:7327115-7327134 Msa0532790:CDS 55.0%
TCGCCTGGTAATTCGGGTGA+TGG + chr4_1:7327279-7327298 Msa0532790:CDS 55.0%
CGCCTGGTAATTCGGGTGAT+GGG + chr4_1:7327280-7327299 Msa0532790:CDS 55.0%
TGCTATGGCTGATCCGAAGC+GGG + chr4_1:7327395-7327414 Msa0532790:CDS 55.0%
! CGGAATCTAGAGCAGCAGGA+AGG + chr4_1:7328346-7328365 Msa0532790:intron 55.0%
!!! GGGTCGCGGTGCAGTTTTTT+TGG + chr4_1:7328379-7328398 Msa0532790:intron 55.0%
! CTGTGTTTGCTGCTGCCAGT+AGG + chr4_1:7328422-7328441 Msa0532790:CDS 55.0%
! GTGTTTGCTGCTGCCAGTAG+GGG + chr4_1:7328424-7328443 Msa0532790:CDS 55.0%
CTCCTATGAACCTACCGCCT+TGG - chr4_1:7328494-7328513 None:intergenic 55.0%
! TGGGTTGGAGGTTGTGCAGA+CGG + chr4_1:7329826-7329845 Msa0532790:three_prime_UTR 55.0%
GGGATCTGGTGTGGGTGTGA+TGG - chr4_1:7326460-7326479 None:intergenic 60.0%
GCATTTGCGGCCGTGAAACC+GGG - chr4_1:7326519-7326538 None:intergenic 60.0%
GGCATTTGCGGCCGTGAAAC+CGG - chr4_1:7326520-7326539 None:intergenic 60.0%
AACGTGCAAGGGCTGAGAGG+CGG - chr4_1:7326619-7326638 None:intergenic 60.0%
CGAAACGTGCAAGGGCTGAG+AGG - chr4_1:7326622-7326641 None:intergenic 60.0%
GTCAGCATGATCCGACGTGG+AGG - chr4_1:7326653-7326672 None:intergenic 60.0%
! CGCCGGTGAGATTTTCTCGG+CGG - chr4_1:7326748-7326767 None:intergenic 60.0%
CCTCGAAGCGGAATCAACGG+CGG - chr4_1:7326820-7326839 None:intergenic 60.0%
GTCGCCGGAAGGTGAAGTTG+TGG + chr4_1:7326924-7326943 Msa0532790:CDS 60.0%
TTGAAGATGCCGCCTTCGCC+TGG + chr4_1:7327246-7327265 Msa0532790:CDS 60.0%
ATCAACCCTCCAGGCGAAGG+CGG - chr4_1:7327258-7327277 None:intergenic 60.0%
GACATCAACCCTCCAGGCGA+AGG - chr4_1:7327261-7327280 None:intergenic 60.0%
!! CTGATCCGAAGCGGGCTAAG+AGG + chr4_1:7327403-7327422 Msa0532790:CDS 60.0%
CAGCACCTCTTAGCCCGCTT+CGG - chr4_1:7327411-7327430 None:intergenic 60.0%
! GGAATCCGAGGGGCCTTTTG+AGG + chr4_1:7328316-7328335 Msa0532790:intron 60.0%
TGGTGTTTGGCCAAGGCGGT+AGG + chr4_1:7328481-7328500 Msa0532790:CDS 60.0%
GGCCAAGGCGGTAGGTTCAT+AGG + chr4_1:7328489-7328508 Msa0532790:intron 60.0%
GGCGGAAATGCCGAAGGAGC+AGG - chr4_1:7326240-7326259 None:intergenic 65.0%
!! CCGCCGTTGATTCCGCTTCG+AGG + chr4_1:7326817-7326836 Msa0532790:CDS 65.0%
AAGATGCCGCCTTCGCCTGG+AGG + chr4_1:7327249-7327268 Msa0532790:CDS 65.0%
AGATGCCGCCTTCGCCTGGA+GGG + chr4_1:7327250-7327269 Msa0532790:CDS 65.0%
CCAGGCGACATCAACCCTCC+AGG - chr4_1:7327267-7327286 None:intergenic 65.0%
!! CCTGGAGGGTTGATGTCGCC+TGG + chr4_1:7327264-7327283 Msa0532790:CDS 65.0%
CCAGCACAGACAGCCCCTAC+TGG - chr4_1:7328440-7328459 None:intergenic 65.0%
CCAGTAGGGGCTGTCTGTGC+TGG + chr4_1:7328437-7328456 Msa0532790:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 7326081 7330203 7326081 ID=Msa0532790;Name=Msa0532790
chr4_1 mRNA 7326081 7330203 7326081 ID=Msa0532790-mRNA-1;Parent=Msa0532790;Name=Msa0532790-mRNA-1;_AED=0.03;_eAED=0.03;_QI=223|0.5|0.8|0.8|1|1|5|380|551
chr4_1 exon 7326081 7327424 7326081 ID=Msa0532790-mRNA-1:exon:2512;Parent=Msa0532790-mRNA-1
chr4_1 exon 7327513 7327645 7327513 ID=Msa0532790-mRNA-1:exon:2513;Parent=Msa0532790-mRNA-1
chr4_1 exon 7327919 7328003 7327919 ID=Msa0532790-mRNA-1:exon:2514;Parent=Msa0532790-mRNA-1
chr4_1 exon 7328413 7328502 7328413 ID=Msa0532790-mRNA-1:exon:2515;Parent=Msa0532790-mRNA-1
chr4_1 exon 7329597 7330203 7329597 ID=Msa0532790-mRNA-1:exon:2516;Parent=Msa0532790-mRNA-1
chr4_1 five_prime_UTR 7326081 7326303 7326081 ID=Msa0532790-mRNA-1:five_prime_utr;Parent=Msa0532790-mRNA-1
chr4_1 CDS 7326304 7327424 7326304 ID=Msa0532790-mRNA-1:cds;Parent=Msa0532790-mRNA-1
chr4_1 CDS 7327513 7327645 7327513 ID=Msa0532790-mRNA-1:cds;Parent=Msa0532790-mRNA-1
chr4_1 CDS 7327919 7328003 7327919 ID=Msa0532790-mRNA-1:cds;Parent=Msa0532790-mRNA-1
chr4_1 CDS 7328413 7328502 7328413 ID=Msa0532790-mRNA-1:cds;Parent=Msa0532790-mRNA-1
chr4_1 CDS 7329597 7329823 7329597 ID=Msa0532790-mRNA-1:cds;Parent=Msa0532790-mRNA-1
chr4_1 three_prime_UTR 7329824 7330203 7329824 ID=Msa0532790-mRNA-1:three_prime_utr;Parent=Msa0532790-mRNA-1
Gene Sequence

>Msa0532790

ATGGAAGATAGTGAAGCAGCTTCATCTTTCATGAAACAACAACAACAAATGAACAATCATATGGAACAATTAACCATACCACAGTTTAATGCATCATCACAATCACAAATGCGAACTGTTAGTAGCAGAAATCAAAGAGGAGGTGGTATACCACCATCACACCCACACCAGATCCCACCTATTTCACCTTACTCTCAGATGAATAATCAGATCCCGGTTTCACGGCCGCAAATGCCGTCGCATAGTACAAGTCCTACACCTTCCCACACACGATCACTCTCTCAACCGTCTTTTTTCTCTCTCGACTCTCTTCCGCCTCTCAGCCCTTGCACGTTTCGCGAATCTTCCTCCACGTCGGATCATGCTGACGTTTCCATGGAAGATCGTGACGTCACTTCTCATTCACCGTTACCTCCGTTTGCTGCTAGAAACCCTTCTCTGCCGCCGAGAAAATCTCACCGGCGTTCTAACAGTGATATTCCATTTGGATTTTCTACTGTTTTGCAGTCTTCGCCGCCGTTGATTCCGCTTCGAGGAAGGGAAGTTGCTAAACCTAATTCGTCGGTGGTGAAAAGGGAAACTAATTGGGAATATAGTAATGTAGAGGAGAAGAAATCGTTGTCGCCGGAAGGTGAAGTTGTGGATGATCTTTTTTCTGCTTATATGAATTTGGATAACATTGATGCAATTAACGATGATAAAAACGCGGCTACTGGTGATAATCGCGATGATTTGGATAGTAGAGCAAGTGGAACGAAGACTAATGGTGGTGATAGTAGTGATAATGAAGCTGAGAGTAGTGTTAATGAGAGTGGGGATAGTATGCAGAGGAGGGAAGGGAATAAGAGAAGTGCAGGAGGTGATATTGCACCGACTACGAGACACTATAGGAGTGTTTCGATGGATAGTTTTATTGGGAAGTTGAATTTCAATGATGAGTCTTTGAAGATGCCGCCTTCGCCTGGAGGGTTGATGTCGCCTGGTAATTCGGGTGATGGGAATTCAGTGGCTTTTAGTTTGGAGTTTGGGAATGGTGAGTTTAGTGGGCCAGAGTTGAAGAAAATTATGGCTAATGAAAAACTTGCTGAGATTGCTATGGCTGATCCGAAGCGGGCTAAGAGGATATTGGCTAATAGGCAATCAGCTGCGCGTTCCAAAGAGCGCAAAATGCGATACATTTCCGAGCTAGAACACAAGGTTCAGACTCTGCAGACTGAAGCCACTACACTTTCTGCACAACTTACTTTGTTGCAGAGAGATTCAGTTGGACTCACTAACCAGAATAGTGAGTTGAAGTTCCGCCTTCAATCCATGGAACAACAGGCAAAACTCCGAGATGACTGCTGTTCTGTGTTTGCTGCTGCCAGTAGGGGCTGTCTGTGCTGGTTTATATTTACTGCTAAAGTTTGGTGTTTGGCCAAGGCGGTAGCTCTGAATGAGGCGCTTACTGCCGAAGTTCAAAGACTGAAGATTGCTACAGCTGAGCTGAATGGGGAGTCACTTCCTTCTAACTGCATGATTCCGCAACATTCTGTCAACCCTATGATGTTCCAACAACAGCATCAGCATCAGCATCAGCAGCATCAACAACAGCAGCAGCATCAACAACAGCAGCAGAATGGTAATGCCAACTCAAAGAATGAGTTAAAGCAATAG

Protein sequence

>Msa0532790

MEDSEAASSFMKQQQQMNNHMEQLTIPQFNASSQSQMRTVSSRNQRGGGIPPSHPHQIPPISPYSQMNNQIPVSRPQMPSHSTSPTPSHTRSLSQPSFFSLDSLPPLSPCTFRESSSTSDHADVSMEDRDVTSHSPLPPFAARNPSLPPRKSHRRSNSDIPFGFSTVLQSSPPLIPLRGREVAKPNSSVVKRETNWEYSNVEEKKSLSPEGEVVDDLFSAYMNLDNIDAINDDKNAATGDNRDDLDSRASGTKTNGGDSSDNEAESSVNESGDSMQRREGNKRSAGGDIAPTTRHYRSVSMDSFIGKLNFNDESLKMPPSPGGLMSPGNSGDGNSVAFSLEFGNGEFSGPELKKIMANEKLAEIAMADPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNSELKFRLQSMEQQAKLRDDCCSVFAAASRGCLCWFIFTAKVWCLAKAVALNEALTAEVQRLKIATAELNGESLPSNCMIPQHSVNPMMFQQQHQHQHQQHQQQQQHQQQQQNGNANSKNELKQ*