AlfalfaGEDB | Msa0284700

M. sativa cultivar zhongmu-4 / Msa0284700

KEGG: K16609
GO: -
PFAM: PF03133.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0284700	XP_013463548.1	95.434	876	18	4	1	857	1	873	0.0	1713

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0284700	sp\|Q3UDE2\|TTL12_MOUSE	37.325	501	249	14	383	850	161	629	1.10e-94	313

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0284700	A0A072V887	95.434	876	18	4	1	857	1	873	0.0	1713

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0246180	Msa0284700	0.967573	1.831345e-127	-8.615850e-47
Msa0284700	Msa0328220	0.802846	4.621992e-49	-8.615850e-47
Msa0284700	Msa0328290	0.870107	1.872891e-66	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0284700	MtrunA17_Chr2g0300641	95.434	876	18	4	1	857	1	873	0.0	1713

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0284700	AT1G77550.1	65.052	867	270	6	10	857	3	855	0.0	1149

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Find 216 sgRNAs with CRISPR-Local

Find 589 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTGCCACTCTAAAGTT+TGG	0.383885	2_3:-23142250	None:intergenic
AACAACCTGCTTTATTCCAG+GGG	0.587507	2_3:+23145774	Msa0284700:CDS
AACTTTGGCGAAGTCTTCGA+AGG	0.557163	2_3:-23139001	None:intergenic
AAGAGATTCCAGAATTTCAA+TGG	0.443802	2_3:-23141690	None:intergenic
AAGGTGACGGTACATTGAGA+TGG	0.641533	2_3:+23139967	Msa0284700:CDS
AAGTTATACATCTAATTTCC+AGG	0.366200	2_3:-23146891	None:intergenic
AAGTTCCGGGATTGGCAGAG+AGG	0.644963	2_3:+23139808	Msa0284700:CDS
AATAAATCACAAGAATATTA+AGG	0.336524	2_3:+23146149	Msa0284700:CDS
AATAGTGCGGGCCATGTTCC+AGG	0.320213	2_3:-23145672	None:intergenic
ACATGATGGGCGTCCTTTAC+GGG	0.362567	2_3:+23142945	Msa0284700:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGTAGTTGGTTAATCATG+AGG	+	chr2_3:23139437-23139456	Msa0284700:intron	30.0%
ATAGTTAGTTGTTAAACTGC+AGG	+	chr2_3:23139473-23139492	Msa0284700:intron	30.0%
TAGTTAGTTGTTAAACTGCA+GGG	+	chr2_3:23139474-23139493	Msa0284700:intron	30.0%
TCTAAGTGTCTTAGAATGTT+AGG	+	chr2_3:23139585-23139604	Msa0284700:intron	30.0%
CTAAGTGTCTTAGAATGTTA+GGG	+	chr2_3:23139586-23139605	Msa0284700:intron	30.0%
TAGAATGTTAGGGACTAATT+TGG	+	chr2_3:23139596-23139615	Msa0284700:intron	30.0%
TGATGATATGTTTCTCTCAT+TGG	+	chr2_3:23140016-23140035	Msa0284700:CDS	30.0%
ATATCCTCACAATTATTGAG+TGG	-	chr2_3:23140436-23140455	None:intergenic	30.0%
ATAATCCAGTTCTTCAGAAT+TGG	+	chr2_3:23140809-23140828	Msa0284700:CDS	30.0%
ACTTACCAAAAAGGAATATG+TGG	-	chr2_3:23140867-23140886	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	23138964	23147043	23138964	ID=Msa0284700;Name=Msa0284700
chr2_3	mRNA	23138964	23147043	23138964	ID=Msa0284700-mRNA-1;Parent=Msa0284700;Name=Msa0284700-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0.92\|0.93\|1\|0.92\|0.93\|15\|228\|857
chr2_3	exon	23138964	23139197	23138964	ID=Msa0284700-mRNA-1:exon:8898;Parent=Msa0284700-mRNA-1
chr2_3	exon	23139801	23140058	23139801	ID=Msa0284700-mRNA-1:exon:8899;Parent=Msa0284700-mRNA-1
chr2_3	exon	23140706	23140830	23140706	ID=Msa0284700-mRNA-1:exon:8900;Parent=Msa0284700-mRNA-1
chr2_3	exon	23140925	23141147	23140925	ID=Msa0284700-mRNA-1:exon:8901;Parent=Msa0284700-mRNA-1
chr2_3	exon	23141409	23141534	23141409	ID=Msa0284700-mRNA-1:exon:8902;Parent=Msa0284700-mRNA-1
chr2_3	exon	23141659	23141915	23141659	ID=Msa0284700-mRNA-1:exon:8903;Parent=Msa0284700-mRNA-1
chr2_3	exon	23142204	23142311	23142204	ID=Msa0284700-mRNA-1:exon:8904;Parent=Msa0284700-mRNA-1
chr2_3	exon	23142623	23142764	23142623	ID=Msa0284700-mRNA-1:exon:8905;Parent=Msa0284700-mRNA-1
chr2_3	exon	23142859	23143024	23142859	ID=Msa0284700-mRNA-1:exon:8906;Parent=Msa0284700-mRNA-1
chr2_3	exon	23145128	23145285	23145128	ID=Msa0284700-mRNA-1:exon:8907;Parent=Msa0284700-mRNA-1
chr2_3	exon	23145551	23145874	23145551	ID=Msa0284700-mRNA-1:exon:8908;Parent=Msa0284700-mRNA-1
chr2_3	exon	23145961	23146035	23145961	ID=Msa0284700-mRNA-1:exon:8909;Parent=Msa0284700-mRNA-1
chr2_3	exon	23146135	23146204	23146135	ID=Msa0284700-mRNA-1:exon:8910;Parent=Msa0284700-mRNA-1
chr2_3	exon	23146315	23146472	23146315	ID=Msa0284700-mRNA-1:exon:8911;Parent=Msa0284700-mRNA-1
chr2_3	exon	23146666	23147043	23146666	ID=Msa0284700-mRNA-1:exon:8912;Parent=Msa0284700-mRNA-1
chr2_3	CDS	23138964	23139197	23138964	ID=Msa0284700-mRNA-1:cds;Parent=Msa0284700-mRNA-1
chr2_3	CDS	23139801	23140058	23139801	ID=Msa0284700-mRNA-1:cds;Parent=Msa0284700-mRNA-1
chr2_3	CDS	23140706	23140830	23140706	ID=Msa0284700-mRNA-1:cds;Parent=Msa0284700-mRNA-1
chr2_3	CDS	23140925	23141147	23140925	ID=Msa0284700-mRNA-1:cds;Parent=Msa0284700-mRNA-1
chr2_3	CDS	23141409	23141534	23141409	ID=Msa0284700-mRNA-1:cds;Parent=Msa0284700-mRNA-1
chr2_3	CDS	23141659	23141915	23141659	ID=Msa0284700-mRNA-1:cds;Parent=Msa0284700-mRNA-1
chr2_3	CDS	23142204	23142311	23142204	ID=Msa0284700-mRNA-1:cds;Parent=Msa0284700-mRNA-1
chr2_3	CDS	23142623	23142764	23142623	ID=Msa0284700-mRNA-1:cds;Parent=Msa0284700-mRNA-1
chr2_3	CDS	23142859	23143024	23142859	ID=Msa0284700-mRNA-1:cds;Parent=Msa0284700-mRNA-1
chr2_3	CDS	23145128	23145285	23145128	ID=Msa0284700-mRNA-1:cds;Parent=Msa0284700-mRNA-1
chr2_3	CDS	23145551	23145874	23145551	ID=Msa0284700-mRNA-1:cds;Parent=Msa0284700-mRNA-1
chr2_3	CDS	23145961	23146035	23145961	ID=Msa0284700-mRNA-1:cds;Parent=Msa0284700-mRNA-1
chr2_3	CDS	23146135	23146204	23146135	ID=Msa0284700-mRNA-1:cds;Parent=Msa0284700-mRNA-1
chr2_3	CDS	23146315	23146472	23146315	ID=Msa0284700-mRNA-1:cds;Parent=Msa0284700-mRNA-1
chr2_3	CDS	23146666	23146815	23146666	ID=Msa0284700-mRNA-1:cds;Parent=Msa0284700-mRNA-1
chr2_3	three_prime_UTR	23146816	23147043	23146816	ID=Msa0284700-mRNA-1:three_prime_utr;Parent=Msa0284700-mRNA-1

Gene Sequence

>Msa0284700

ATGGTAGCAATGGCAACCACAACAAAGAGAATCGAAACCTTCGAAGACTTCGCCAAAGTTCACGGAATTCTACTCGCCGCTTCGGGTTTACCGGAATCCCTCCACCGCCGTCTCTTCCACAAACTCTCCACCGAAACCTTCGACGGCGGCGAGCATTTCCAGATCGAACCTTGCGAAGAGAATCGCATGAGACGCCTCGTTTTGACTTCGGATTCTATGGCTAAAGACTCTAATCTGCGTGAAGTTCCGGGATTGGCAGAGAGGATGGGTTCTTTGATGTGTGTGGATATTGATTTGGATAGTGAAACTGAGGTGAATGGTGTTGATGATGATGATGTTTCGGGAGAGAAGGTTAGTGTTGTAGAAATGTTGGAGAGTGAGGTTCGAGAGGTGAAAGAGAAAGGTGACGGTACATTGAGATGGTTGGAGCTTGATGGTCTTGATATCGATGATGATATGTTTCTCTCATTGGACTTGCCTGCTAGATTCCCGAATTTAGTGGCACTTAGCCTGTATGGGAACAAGCTTACAAGACCTGAATTGATTATTCAAGAAGTTATCAAATTTAAACATCTCAAAGGACTCTGGCTGAACAATAATCCAGTTCTTCAGAATTGTGATGGTGATCTTGCAGGTATTATTCTTAAGGAGTTACCAGAACTGGAGATTTATAATTCAACTTTCACAAGCAATTTTGGGGAGTGGGCTTTGGGCTTTTGCGCAGAGATATATGGAAAGGATAACCCATCCCCATCTAATGCTGATCAAGCTGACAGTCCACTGCTGAGTGTATCTAATCTTGATCTTTCAAATAGAAACATTCACAATCTGATCAACAAGGACTTTTCACCCATTTGTTTGCCATCCCTTTCGTACTTGAACATTCGTGGAAATCCATTGGAGCAAAGCTCAGTTACCGACTTGTTAGATTTGCTGAGGCGATTTTCTTGCTTACGTTCATTGGAGGTCGATATTCCTGGTCCTCTTGGGGGAAGTGCCATTGAAATTCTGGAATCTCTTCCAAACATATCTAAACTAAATGGTATCTGTGCATCCAAAATATTGGAAAGTGGAAAGCATGTTATTGATTCAGTGCTTCTTCCTCGCTTTCCTGAATGGACTCCTGATGAGCCTATTCATGACCGTATTATAAGTGCAATGTGGCAATATCTAATGACATATAGACTTGCTGATGAAGAAAAGTTAGACGAAACCTCTGTATGGTACGTGATGGATGAATTTGGTTCTGCTTTGCGGCACAGTGATGAGCCAAACTTTAGAGTGGCACCTTTTCTTTTCATGCCAGAGGGCAATCTAGCATCGGCTGTGAGCTTTTCTATTCTATGGCCAACACGGAATGTTTGGAAAGGCGATGAATGCACTCGTGACTTTCTTCTTGGTATTGGAGAAGATAAACAACGTTCTGCCAGACTTACTGCTTGGTTCAATACCCCAGAGAACTATTTTATCCAAGAGTATGAGAAGTACAATCAGAGATTGCAATCCACCAGTTTAATACCACCCACTGTGCAGTCCTCTGAGAGCAGAAGTATTCGCCCACATGATGGGCGTCCTTTACGGGTATACACAGATATACCTCACGTGGAAGAGTACTTGACACATCCTGAGTTTGCAATCATAAAGGACCCAAAAGATGCAGATATAATATGGACCTGCGTACAGGTTGATGAGGAGTTGAAGAAGGCCACGGGAATAACAGATCAGCAATACATTAATCAATTTCCATTTGAGGCTTGTCTTGTCATGAAGCATCATTTAGCAGAAACAATTCAAAAGGCACATGGATCTCCTCAATGGTTGCATCCTACTTATAATCTTGAAACTCATCTGTCTCAACTTATTGGTGACTATTATGTACGCAAAAGAGAAGGACTAGACAACCTTTGGATCTTAAAACCCTGGAACATGGCCCGCACTATTGATACTACTGTAACTGATAACTTACCAGCCATAATCCGACTCATGGAAACTGGTCCAAAAATATGCCAGAAGTATATTGAACAACCTGCTTTATTCCAGGGGAAAAAGTTTGATCTCCGTTATGTAGTACTGGTTCGGAGCATGCACCCTTTGGAGATATTCCTGTCAGATTGTTTCTGGGTTAGGATAGCTAACAACCAATATTCTTTGGCCAAAAGTAGTCTTTTTGAGTATGAAACTCATTTCACTGTTATGAATTATCGTGGAAGAATAAATCACAAGAATATTAAGGATTTTGTGAGGGAATTTGAGGAAGAACATCAAGTTAAATGGTTGGATATACATGCAAGAGTAAGGACTATGATTCGATCGGTGTTTCAGGCAGCTGCGGTTGCACATCCTGAGATGCATAGTCCAACATCAAGGGCAATTTACGGTGTAGATGTCATGTTAGACAGCTCTTTCCAACCTAAGTTACTAGAGGTGACTTACTGCCCTGATTGTACACGAGCTTGCAAATATGACATGGATATCGTTGTTGGAGAAGGAGGTATTGCCAAAGGTTGTGATTTCTTCAACAATGTTTTCAAGTGTCTCTTTTTGAATGAAATTTCTCAGGTTAGTCAATTGTAA

Protein sequence

>Msa0284700

MVAMATTTKRIETFEDFAKVHGILLAASGLPESLHRRLFHKLSTETFDGGEHFQIEPCEENRMRRLVLTSDSMAKDSNLREVPGLAERMGSLMCVDIDLDSETEVNGVDDDDVSGEKVSVVEMLESEVREVKEKGDGTLRWLELDGLDIDDDMFLSLDLPARFPNLVALSLYGNKLTRPELIIQEVIKFKHLKGLWLNNNPVLQNCDGDLAGIILKELPELEIYNSTFTSNFGEWALGFCAEIYGKDNPSPSNADQADSPLLSVSNLDLSNRNIHNLINKDFSPICLPSLSYLNIRGNPLEQSSVTDLLDLLRRFSCLRSLEVDIPGPLGGSAIEILESLPNISKLNGICASKILESGKHVIDSVLLPRFPEWTPDEPIHDRIISAMWQYLMTYRLADEEKLDETSVWYVMDEFGSALRHSDEPNFRVAPFLFMPEGNLASAVSFSILWPTRNVWKGDECTRDFLLGIGEDKQRSARLTAWFNTPENYFIQEYEKYNQRLQSTSLIPPTVQSSESRSIRPHDGRPLRVYTDIPHVEEYLTHPEFAIIKDPKDADIIWTCVQVDEELKKATGITDQQYINQFPFEACLVMKHHLAETIQKAHGSPQWLHPTYNLETHLSQLIGDYYVRKREGLDNLWILKPWNMARTIDTTVTDNLPAIIRLMETGPKICQKYIEQPALFQGKKFDLRYVVLVRSMHPLEIFLSDCFWVRIANNQYSLAKSSLFEYETHFTVMNYRGRINHKNIKDFVREFEEEHQVKWLDIHARVRTMIRSVFQAAAVAHPEMHSPTSRAIYGVDVMLDSSFQPKLLEVTYCPDCTRACKYDMDIVVGEGGIAKGCDFFNNVFKCLFLNEISQVSQL*