Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289970 | AES66101.1 | 84.965 | 286 | 34 | 2 | 7 | 283 | 283 | 568 | 6.48e-172 | 497 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289970 | sp|Q9SYK0|HEXO2_ARATH | 66.187 | 278 | 89 | 2 | 6 | 282 | 302 | 575 | 2.25e-127 | 377 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289970 | G7IQQ5 | 84.965 | 286 | 34 | 2 | 7 | 283 | 283 | 568 | 3.10e-172 | 497 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0075310 | Msa0289970 | 0.803773 | 2.970707e-49 | -8.615850e-47 |
| Msa0289970 | Msa0890250 | 0.824016 | 1.014265e-53 | -8.615850e-47 |
| Msa0289970 | Msa1044340 | 0.813168 | 2.934192e-51 | -8.615850e-47 |
| Msa0289970 | Msa1237030 | 0.815106 | 1.095773e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289970 | MtrunA17_Chr2g0309231 | 84.965 | 286 | 34 | 2 | 7 | 283 | 321 | 606 | 8.28e-176 | 498 |
| Msa0289970 | MtrunA17_Chr1g0212791 | 26.582 | 237 | 134 | 8 | 46 | 277 | 332 | 533 | 1.89e-16 | 79.0 |
| Msa0289970 | MtrunA17_Chr7g0222681 | 27.731 | 238 | 130 | 10 | 46 | 277 | 354 | 555 | 4.09e-15 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289970 | AT1G05590.2 | 66.187 | 278 | 89 | 2 | 6 | 282 | 302 | 575 | 2.29e-128 | 377 |
| Msa0289970 | AT1G05590.3 | 66.187 | 278 | 89 | 2 | 6 | 282 | 302 | 575 | 2.29e-128 | 377 |
| Msa0289970 | AT1G05590.1 | 66.187 | 278 | 89 | 2 | 6 | 282 | 302 | 575 | 2.29e-128 | 377 |
| Msa0289970 | AT3G55260.1 | 26.160 | 237 | 135 | 8 | 46 | 277 | 337 | 538 | 2.68e-15 | 76.3 |
| Msa0289970 | AT1G65590.1 | 26.244 | 221 | 126 | 8 | 46 | 265 | 334 | 518 | 1.62e-13 | 70.9 |
Find 68 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCTTTGTTACCTAATTA+TGG | 0.102045 | 2_3:-36585165 | Msa0289970:CDS |
| TGCAAAATCACATGTTCTTT+AGG | 0.228672 | 2_3:+36583951 | None:intergenic |
| CTGCTGGTGATCCCATAATT+AGG | 0.273715 | 2_3:+36585153 | None:intergenic |
| GACTGAAGAAGAAGCGAAAT+TGG | 0.276871 | 2_3:-36583700 | Msa0289970:CDS |
| TACAATTATGATATAACTTA+TGG | 0.278390 | 2_3:-36583726 | Msa0289970:CDS |
| CAGAAATTTCTATCAAATAA+TGG | 0.278468 | 2_3:-36584104 | Msa0289970:CDS |
| GCAAAATCACATGTTCTTTA+GGG | 0.282000 | 2_3:+36583952 | None:intergenic |
| TGTGGACACGGCGACTTTAC+TGG | 0.284986 | 2_3:-36583837 | Msa0289970:CDS |
| ACAAGCCGATGAAACTGTTT+TGG | 0.297680 | 2_3:-36583646 | Msa0289970:CDS |
| ATGGACATGACAACACTAAA+AGG | 0.308012 | 2_3:-36583917 | Msa0289970:CDS |
| CGTGCTATTGGAAGATTATC+TGG | 0.308706 | 2_3:-36585252 | Msa0289970:CDS |
| TCTCTTTGTTACCTAATTAT+GGG | 0.319062 | 2_3:-36585164 | Msa0289970:CDS |
| TGATAAACGTCTCAAGGATT+TGG | 0.327332 | 2_3:+36584072 | None:intergenic |
| GATAGAAATTTCTGAATTGT+TGG | 0.328121 | 2_3:+36584113 | None:intergenic |
| CAACCGCACTGTTGTCTATT+GGG | 0.335798 | 2_3:-36584021 | Msa0289970:CDS |
| TTCAACCACTTTGGTGTGTT+AGG | 0.344290 | 2_3:-36583470 | Msa0289970:CDS |
| GATCACTTGTTACGTGCTAT+TGG | 0.346033 | 2_3:-36585264 | None:intergenic |
| TCAACCGCACTGTTGTCTAT+TGG | 0.349238 | 2_3:-36584022 | Msa0289970:CDS |
| AGTCCTTGTGGTCAGGCAAT+AGG | 0.362517 | 2_3:-36583587 | Msa0289970:CDS |
| CGTGTTTGTCACTTCCTGTT+TGG | 0.383588 | 2_3:+36583793 | None:intergenic |
| TCAGCCATTGCAGAAGTTCT+AGG | 0.394283 | 2_3:+36583609 | None:intergenic |
| AGAATGGTGAGCAGAGGTAT+AGG | 0.395039 | 2_3:-36583504 | Msa0289970:CDS |
| GTCCTTGTGGTCAGGCAATA+GGG | 0.416098 | 2_3:-36583586 | Msa0289970:CDS |
| ACACACCAAAGTGGTTGAAT+AGG | 0.427892 | 2_3:+36583474 | None:intergenic |
| AATAGACAACAGTGCGGTTG+AGG | 0.434104 | 2_3:+36584024 | None:intergenic |
| CAACAGATAGATTGAATGAA+TGG | 0.452558 | 2_3:-36583533 | Msa0289970:CDS |
| GTCAGGCAATAGGGATGAAA+CGG | 0.459955 | 2_3:-36583577 | Msa0289970:CDS |
| ATTGGAAGATTATCTGGAAA+AGG | 0.469137 | 2_3:-36585246 | Msa0289970:CDS |
| AGTATTTACGACAACCAAAC+AGG | 0.473889 | 2_3:-36583807 | Msa0289970:CDS |
| ACTAAAAGGATAGTATCTTC+TGG | 0.481580 | 2_3:-36583903 | Msa0289970:CDS |
| ACAAACACGATGGCGGCTCT+TGG | 0.490527 | 2_3:-36583779 | Msa0289970:CDS |
| TACTACCTTGACTGTGGACA+CGG | 0.490926 | 2_3:-36583849 | Msa0289970:CDS |
| GAAGGCTAGAATCGTGGAAA+AGG | 0.493594 | 2_3:-36585190 | Msa0289970:CDS |
| ATGGCTGAGTCCTTGTGGTC+AGG | 0.502527 | 2_3:-36583594 | Msa0289970:CDS |
| TGTACTGTGTTGCACATACC+AGG | 0.508347 | 2_3:+36583444 | None:intergenic |
| ATAGACAACAGTGCGGTTGA+GGG | 0.511127 | 2_3:+36584025 | None:intergenic |
| CTGAGCCTATTCAACCACTT+TGG | 0.522499 | 2_3:-36583479 | Msa0289970:CDS |
| TACAATTGAAAATGCATCGA+AGG | 0.522984 | 2_3:-36585208 | Msa0289970:CDS |
| CACGATGGCGGCTCTTGGTG+TGG | 0.523166 | 2_3:-36583774 | Msa0289970:CDS |
| CTAATTATGGGATCACCAGC+AGG | 0.540701 | 2_3:-36585152 | Msa0289970:CDS |
| ATCCCTATTGCCTGACCACA+AGG | 0.540723 | 2_3:+36583584 | None:intergenic |
| TATGGGATCACCAGCAGGAA+AGG | 0.541703 | 2_3:-36585147 | Msa0289970:intron |
| CGAATCCAAAACAGTTTCAT+CGG | 0.549544 | 2_3:+36583641 | None:intergenic |
| TGTTGTTGATAAACGTCTCA+AGG | 0.551943 | 2_3:+36584066 | None:intergenic |
| CTTTGGTGTGTTAGGAACCC+TGG | 0.555049 | 2_3:-36583462 | Msa0289970:CDS |
| CGGTTGAGGGATAAAATGAA+AGG | 0.557641 | 2_3:+36584038 | None:intergenic |
| TTGGAATAGACCTTTCCTGC+TGG | 0.562114 | 2_3:+36585137 | None:intergenic |
| TCAGGCAATAGGGATGAAAC+GGG | 0.571000 | 2_3:-36583576 | Msa0289970:CDS |
| CTGCAATGGCTGAGTCCTTG+TGG | 0.573090 | 2_3:-36583599 | Msa0289970:CDS |
| GGAAGATTATCTGGAAAAGG+TGG | 0.573573 | 2_3:-36585243 | Msa0289970:CDS |
| GGAGAATCGTCGATGGAACA+TGG | 0.579419 | 2_3:+36583973 | None:intergenic |
| GGTGTGGACCTTTCAAAACA+TGG | 0.593385 | 2_3:-36583758 | Msa0289970:CDS |
| TTGGCCTAGAACTTCTGCAA+TGG | 0.607551 | 2_3:-36583613 | Msa0289970:CDS |
| AGTCGCCGTGTCCACAGTCA+AGG | 0.611408 | 2_3:+36583844 | None:intergenic |
| GGTTGAGGGATAAAATGAAA+GGG | 0.626699 | 2_3:+36584039 | None:intergenic |
| AGAAGCAGAATGGTGAGCAG+AGG | 0.627024 | 2_3:-36583510 | Msa0289970:CDS |
| TGCATCGAAGGCTAGAATCG+TGG | 0.629789 | 2_3:-36585196 | Msa0289970:CDS |
| GAATGAATGGAGAAGCAGAA+TGG | 0.631006 | 2_3:-36583520 | Msa0289970:CDS |
| TCTTTAGGGAGAATCGTCGA+TGG | 0.674370 | 2_3:+36583966 | None:intergenic |
| GGAAGTGACAAACACGATGG+CGG | 0.686289 | 2_3:-36583786 | Msa0289970:CDS |
| GGGTTCCTAACACACCAAAG+TGG | 0.688027 | 2_3:+36583465 | None:intergenic |
| GGGTCTGAAGCGATACGCAG+AGG | 0.696558 | 2_3:-36583556 | Msa0289970:CDS |
| TAGGTGGGGAGGTAGCGTTG+TGG | 0.723910 | 2_3:-36583674 | Msa0289970:CDS |
| AAAGTCTGATGATGACACGA+TGG | 0.724589 | 2_3:+36583872 | None:intergenic |
| CTGATGATGACACGATGGCG+TGG | 0.724872 | 2_3:+36583877 | None:intergenic |
| GTACTGTGTTGCACATACCA+GGG | 0.730881 | 2_3:+36583445 | None:intergenic |
| ACAGGAAGTGACAAACACGA+TGG | 0.750654 | 2_3:-36583789 | Msa0289970:CDS |
| CTTCCCAATAGACAACAGTG+CGG | 0.829451 | 2_3:+36584018 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTACAAAAATATCAAATTTT+GGG | - | chr2_3:36583672-36583691 | Msa0289970:CDS | 10.0% |
| !!! | TTACAAAAATATCAAATTTT+GGG | - | chr2_3:36583672-36583691 | Msa0289970:CDS | 10.0% |
| !!! | GTTACAAAAATATCAAATTT+TGG | - | chr2_3:36583671-36583690 | Msa0289970:CDS | 15.0% |
| !! | TACAATTATGATATAACTTA+TGG | - | chr2_3:36584966-36584985 | Msa0289970:intron | 15.0% |
| !!! | GTTACAAAAATATCAAATTT+TGG | - | chr2_3:36583671-36583690 | Msa0289970:CDS | 15.0% |
| !! | TACAATTATGATATAACTTA+TGG | - | chr2_3:36584966-36584985 | Msa0289970:intron | 15.0% |
| !!! | CAAGATATATATTGTTGTTT+TGG | + | chr2_3:36583854-36583873 | None:intergenic | 20.0% |
| !! | CAAAACAACAATATATATCT+TGG | - | chr2_3:36583852-36583871 | Msa0289970:CDS | 20.0% |
| !! | TAAAGCGATATCAATATTAA+AGG | + | chr2_3:36584026-36584045 | None:intergenic | 20.0% |
| !! | CAGAAATTTCTATCAAATAA+TGG | - | chr2_3:36584588-36584607 | Msa0289970:intron | 20.0% |
| !!! | CAAGATATATATTGTTGTTT+TGG | + | chr2_3:36583854-36583873 | None:intergenic | 20.0% |
| !! | CAAAACAACAATATATATCT+TGG | - | chr2_3:36583852-36583871 | Msa0289970:CDS | 20.0% |
| !! | TAAAGCGATATCAATATTAA+AGG | + | chr2_3:36584026-36584045 | None:intergenic | 20.0% |
| !! | CAGAAATTTCTATCAAATAA+TGG | - | chr2_3:36584588-36584607 | Msa0289970:intron | 20.0% |
| !! | TGCATTTTCAATTGTAAACT+TGG | + | chr2_3:36583480-36583499 | None:intergenic | 25.0% |
| ! | ATCTCTTTGTTACCTAATTA+TGG | - | chr2_3:36583527-36583546 | Msa0289970:CDS | 25.0% |
| ! | TCTCTTTGTTACCTAATTAT+GGG | - | chr2_3:36583528-36583547 | Msa0289970:CDS | 25.0% |
| ! | TACTTATTTATGAATGCTTG+CGG | - | chr2_3:36583641-36583660 | Msa0289970:CDS | 25.0% |
| ! | AATTCTTTCATTACAAGACA+AGG | + | chr2_3:36583701-36583720 | None:intergenic | 25.0% |
| !!! | AGTATTGATGATAAAGGAAA+GGG | + | chr2_3:36584065-36584084 | None:intergenic | 25.0% |
| !!! | AAGTATTGATGATAAAGGAA+AGG | + | chr2_3:36584066-36584085 | None:intergenic | 25.0% |
| !! | TCTGTCTTTGTATTTTATCA+GGG | + | chr2_3:36584421-36584440 | None:intergenic | 25.0% |
| !! | ATCTGTCTTTGTATTTTATC+AGG | + | chr2_3:36584422-36584441 | None:intergenic | 25.0% |
| ! | GATAAAATACAAAGACAGAT+AGG | - | chr2_3:36584422-36584441 | Msa0289970:intron | 25.0% |
| ! | GATAGAAATTTCTGAATTGT+TGG | + | chr2_3:36584582-36584601 | None:intergenic | 25.0% |
| !!! | ATATTTTGCCATGTTTTGAA+AGG | + | chr2_3:36584945-36584964 | None:intergenic | 25.0% |
| !! | TGCATTTTCAATTGTAAACT+TGG | + | chr2_3:36583480-36583499 | None:intergenic | 25.0% |
| ! | ATCTCTTTGTTACCTAATTA+TGG | - | chr2_3:36583527-36583546 | Msa0289970:CDS | 25.0% |
| ! | TCTCTTTGTTACCTAATTAT+GGG | - | chr2_3:36583528-36583547 | Msa0289970:CDS | 25.0% |
| ! | TACTTATTTATGAATGCTTG+CGG | - | chr2_3:36583641-36583660 | Msa0289970:CDS | 25.0% |
| ! | AATTCTTTCATTACAAGACA+AGG | + | chr2_3:36583701-36583720 | None:intergenic | 25.0% |
| !!! | AGTATTGATGATAAAGGAAA+GGG | + | chr2_3:36584065-36584084 | None:intergenic | 25.0% |
| !!! | AAGTATTGATGATAAAGGAA+AGG | + | chr2_3:36584066-36584085 | None:intergenic | 25.0% |
| !! | TCTGTCTTTGTATTTTATCA+GGG | + | chr2_3:36584421-36584440 | None:intergenic | 25.0% |
| !! | ATCTGTCTTTGTATTTTATC+AGG | + | chr2_3:36584422-36584441 | None:intergenic | 25.0% |
| ! | GATAAAATACAAAGACAGAT+AGG | - | chr2_3:36584422-36584441 | Msa0289970:intron | 25.0% |
| ! | GATAGAAATTTCTGAATTGT+TGG | + | chr2_3:36584582-36584601 | None:intergenic | 25.0% |
| !!! | ATATTTTGCCATGTTTTGAA+AGG | + | chr2_3:36584945-36584964 | None:intergenic | 25.0% |
| ATTGGAAGATTATCTGGAAA+AGG | - | chr2_3:36583446-36583465 | Msa0289970:CDS | 30.0% | |
| TACAATTGAAAATGCATCGA+AGG | - | chr2_3:36583484-36583503 | Msa0289970:CDS | 30.0% | |
| ! | TGAACAATTTTCCAAGTGAA+TGG | - | chr2_3:36583981-36584000 | Msa0289970:CDS | 30.0% |
| TCCTTTATCATCAATACTTC+AGG | - | chr2_3:36584067-36584086 | Msa0289970:CDS | 30.0% | |
| !! | ACCTGAAGTATTGATGATAA+AGG | + | chr2_3:36584071-36584090 | None:intergenic | 30.0% |
| TTATCATCAATACTTCAGGT+TGG | - | chr2_3:36584071-36584090 | Msa0289970:CDS | 30.0% | |
| ! | TATCATCAATACTTCAGGTT+GGG | - | chr2_3:36584072-36584091 | Msa0289970:CDS | 30.0% |
| TTTCATTGTGATGCTCAATT+TGG | + | chr2_3:36584224-36584243 | None:intergenic | 30.0% | |
| AAATCGCATACAAAGTCTTA+AGG | - | chr2_3:36584314-36584333 | Msa0289970:intron | 30.0% | |
| ! | CTGTCTTTGTATTTTATCAG+GGG | + | chr2_3:36584420-36584439 | None:intergenic | 30.0% |
| GCAAAATCACATGTTCTTTA+GGG | + | chr2_3:36584743-36584762 | None:intergenic | 30.0% | |
| TGCAAAATCACATGTTCTTT+AGG | + | chr2_3:36584744-36584763 | None:intergenic | 30.0% | |
| ACTAAAAGGATAGTATCTTC+TGG | - | chr2_3:36584789-36584808 | Msa0289970:intron | 30.0% | |
| CAACAGATAGATTGAATGAA+TGG | - | chr2_3:36585159-36585178 | Msa0289970:CDS | 30.0% | |
| ATTGGAAGATTATCTGGAAA+AGG | - | chr2_3:36583446-36583465 | Msa0289970:CDS | 30.0% | |
| TACAATTGAAAATGCATCGA+AGG | - | chr2_3:36583484-36583503 | Msa0289970:CDS | 30.0% | |
| ! | TGAACAATTTTCCAAGTGAA+TGG | - | chr2_3:36583981-36584000 | Msa0289970:CDS | 30.0% |
| TCCTTTATCATCAATACTTC+AGG | - | chr2_3:36584067-36584086 | Msa0289970:CDS | 30.0% | |
| !! | ACCTGAAGTATTGATGATAA+AGG | + | chr2_3:36584071-36584090 | None:intergenic | 30.0% |
| TTATCATCAATACTTCAGGT+TGG | - | chr2_3:36584071-36584090 | Msa0289970:CDS | 30.0% | |
| ! | TATCATCAATACTTCAGGTT+GGG | - | chr2_3:36584072-36584091 | Msa0289970:CDS | 30.0% |
| TTTCATTGTGATGCTCAATT+TGG | + | chr2_3:36584224-36584243 | None:intergenic | 30.0% | |
| AAATCGCATACAAAGTCTTA+AGG | - | chr2_3:36584314-36584333 | Msa0289970:intron | 30.0% | |
| ! | CTGTCTTTGTATTTTATCAG+GGG | + | chr2_3:36584420-36584439 | None:intergenic | 30.0% |
| GCAAAATCACATGTTCTTTA+GGG | + | chr2_3:36584743-36584762 | None:intergenic | 30.0% | |
| TGCAAAATCACATGTTCTTT+AGG | + | chr2_3:36584744-36584763 | None:intergenic | 30.0% | |
| ACTAAAAGGATAGTATCTTC+TGG | - | chr2_3:36584789-36584808 | Msa0289970:intron | 30.0% | |
| CAACAGATAGATTGAATGAA+TGG | - | chr2_3:36585159-36585178 | Msa0289970:CDS | 30.0% | |
| TATTTATGAATGCTTGCGGA+TGG | - | chr2_3:36583645-36583664 | Msa0289970:CDS | 35.0% | |
| ! | CTGTCAATTCCTTTTCCTTT+TGG | - | chr2_3:36583775-36583794 | Msa0289970:CDS | 35.0% |
| ! | ATTCCTTTTCCTTTTGGACA+AGG | - | chr2_3:36583781-36583800 | Msa0289970:CDS | 35.0% |
| TTGCACAAGTGTTTGTATTC+TGG | - | chr2_3:36583827-36583846 | Msa0289970:CDS | 35.0% | |
| TTCCAAGTGAATGGTTCATA+TGG | - | chr2_3:36583990-36584009 | Msa0289970:CDS | 35.0% | |
| TTCCATATGAACCATTCACT+TGG | + | chr2_3:36583995-36584014 | None:intergenic | 35.0% | |
| ATCTACCTACCTTCTATGAA+CGG | - | chr2_3:36584246-36584265 | Msa0289970:intron | 35.0% | |
| ! | TCCATTAGTCTAATGTGTCT+TGG | + | chr2_3:36584372-36584391 | None:intergenic | 35.0% |
| TGATAAACGTCTCAAGGATT+TGG | + | chr2_3:36584623-36584642 | None:intergenic | 35.0% | |
| ! | TGTTGTTGATAAACGTCTCA+AGG | + | chr2_3:36584629-36584648 | None:intergenic | 35.0% |
| GGTTGAGGGATAAAATGAAA+GGG | + | chr2_3:36584656-36584675 | None:intergenic | 35.0% | |
| ! | AACATGTGATTTTGCAGACA+TGG | - | chr2_3:36584748-36584767 | Msa0289970:intron | 35.0% |
| ! | ATTTTGCAGACATGGAACAA+TGG | - | chr2_3:36584756-36584775 | Msa0289970:intron | 35.0% |
| ATGGACATGACAACACTAAA+AGG | - | chr2_3:36584775-36584794 | Msa0289970:intron | 35.0% | |
| AGTATTTACGACAACCAAAC+AGG | - | chr2_3:36584885-36584904 | Msa0289970:intron | 35.0% | |
| !!! | GAAGAAGCGAAATTGGTTTT+AGG | - | chr2_3:36584999-36585018 | Msa0289970:intron | 35.0% |
| !!! | AAGCGAAATTGGTTTTAGGT+GGG | - | chr2_3:36585003-36585022 | Msa0289970:intron | 35.0% |
| CGAATCCAAAACAGTTTCAT+CGG | + | chr2_3:36585054-36585073 | None:intergenic | 35.0% | |
| TATTTATGAATGCTTGCGGA+TGG | - | chr2_3:36583645-36583664 | Msa0289970:CDS | 35.0% | |
| ! | CTGTCAATTCCTTTTCCTTT+TGG | - | chr2_3:36583775-36583794 | Msa0289970:CDS | 35.0% |
| ! | ATTCCTTTTCCTTTTGGACA+AGG | - | chr2_3:36583781-36583800 | Msa0289970:CDS | 35.0% |
| TTGCACAAGTGTTTGTATTC+TGG | - | chr2_3:36583827-36583846 | Msa0289970:CDS | 35.0% | |
| TTCCAAGTGAATGGTTCATA+TGG | - | chr2_3:36583990-36584009 | Msa0289970:CDS | 35.0% | |
| TTCCATATGAACCATTCACT+TGG | + | chr2_3:36583995-36584014 | None:intergenic | 35.0% | |
| ATCTACCTACCTTCTATGAA+CGG | - | chr2_3:36584246-36584265 | Msa0289970:intron | 35.0% | |
| ! | TCCATTAGTCTAATGTGTCT+TGG | + | chr2_3:36584372-36584391 | None:intergenic | 35.0% |
| TGATAAACGTCTCAAGGATT+TGG | + | chr2_3:36584623-36584642 | None:intergenic | 35.0% | |
| ! | TGTTGTTGATAAACGTCTCA+AGG | + | chr2_3:36584629-36584648 | None:intergenic | 35.0% |
| GGTTGAGGGATAAAATGAAA+GGG | + | chr2_3:36584656-36584675 | None:intergenic | 35.0% | |
| ! | AACATGTGATTTTGCAGACA+TGG | - | chr2_3:36584748-36584767 | Msa0289970:intron | 35.0% |
| ! | ATTTTGCAGACATGGAACAA+TGG | - | chr2_3:36584756-36584775 | Msa0289970:intron | 35.0% |
| ATGGACATGACAACACTAAA+AGG | - | chr2_3:36584775-36584794 | Msa0289970:intron | 35.0% | |
| AGTATTTACGACAACCAAAC+AGG | - | chr2_3:36584885-36584904 | Msa0289970:intron | 35.0% | |
| !!! | GAAGAAGCGAAATTGGTTTT+AGG | - | chr2_3:36584999-36585018 | Msa0289970:intron | 35.0% |
| !!! | AAGCGAAATTGGTTTTAGGT+GGG | - | chr2_3:36585003-36585022 | Msa0289970:intron | 35.0% |
| CGAATCCAAAACAGTTTCAT+CGG | + | chr2_3:36585054-36585073 | None:intergenic | 35.0% | |
| ! | CGTGCTATTGGAAGATTATC+TGG | - | chr2_3:36583440-36583459 | Msa0289970:CDS | 40.0% |
| GGAAGATTATCTGGAAAAGG+TGG | - | chr2_3:36583449-36583468 | Msa0289970:CDS | 40.0% | |
| TTCTGCCATCCTAGAAGTAA+CGG | + | chr2_3:36583589-36583608 | None:intergenic | 40.0% | |
| !! | TTACTTCTAGGATGGCAGAA+TGG | - | chr2_3:36583589-36583608 | Msa0289970:CDS | 40.0% |
| TCTCCTTGTCCAAAAGGAAA+AGG | + | chr2_3:36583787-36583806 | None:intergenic | 40.0% | |
| TACAACCGTTCATAGAAGGT+AGG | + | chr2_3:36584254-36584273 | None:intergenic | 40.0% | |
| TCTCTACAACCGTTCATAGA+AGG | + | chr2_3:36584258-36584277 | None:intergenic | 40.0% | |
| ! | ATTTTCTGCTGTCCAAGTTC+AGG | + | chr2_3:36584298-36584317 | None:intergenic | 40.0% |
| TTGGTGTAGCTTAGTTGGAA+TGG | + | chr2_3:36584346-36584365 | None:intergenic | 40.0% | |
| TTCCAACTAAGCTACACCAA+TGG | - | chr2_3:36584346-36584365 | Msa0289970:intron | 40.0% | |
| GCCAAGACACATTAGACTAA+TGG | - | chr2_3:36584368-36584387 | Msa0289970:intron | 40.0% | |
| CGGTTGAGGGATAAAATGAA+AGG | + | chr2_3:36584657-36584676 | None:intergenic | 40.0% | |
| ! | AAAGTCTGATGATGACACGA+TGG | + | chr2_3:36584823-36584842 | None:intergenic | 40.0% |
| ! | GACTTTTACTACCTTGACTG+TGG | - | chr2_3:36584837-36584856 | Msa0289970:intron | 40.0% |
| GACTGAAGAAGAAGCGAAAT+TGG | - | chr2_3:36584992-36585011 | Msa0289970:intron | 40.0% | |
| !!! | GAAGCGAAATTGGTTTTAGG+TGG | - | chr2_3:36585002-36585021 | Msa0289970:intron | 40.0% |
| !!! | AGCGAAATTGGTTTTAGGTG+GGG | - | chr2_3:36585004-36585023 | Msa0289970:intron | 40.0% |
| ! | ACAAGCCGATGAAACTGTTT+TGG | - | chr2_3:36585046-36585065 | Msa0289970:intron | 40.0% |
| GAATGAATGGAGAAGCAGAA+TGG | - | chr2_3:36585172-36585191 | Msa0289970:CDS | 40.0% | |
| ACACACCAAAGTGGTTGAAT+AGG | + | chr2_3:36585221-36585240 | None:intergenic | 40.0% | |
| ! | TTCAACCACTTTGGTGTGTT+AGG | - | chr2_3:36585222-36585241 | Msa0289970:CDS | 40.0% |
| ! | CGTGCTATTGGAAGATTATC+TGG | - | chr2_3:36583440-36583459 | Msa0289970:CDS | 40.0% |
| GGAAGATTATCTGGAAAAGG+TGG | - | chr2_3:36583449-36583468 | Msa0289970:CDS | 40.0% | |
| TTCTGCCATCCTAGAAGTAA+CGG | + | chr2_3:36583589-36583608 | None:intergenic | 40.0% | |
| !! | TTACTTCTAGGATGGCAGAA+TGG | - | chr2_3:36583589-36583608 | Msa0289970:CDS | 40.0% |
| TCTCCTTGTCCAAAAGGAAA+AGG | + | chr2_3:36583787-36583806 | None:intergenic | 40.0% | |
| TACAACCGTTCATAGAAGGT+AGG | + | chr2_3:36584254-36584273 | None:intergenic | 40.0% | |
| TCTCTACAACCGTTCATAGA+AGG | + | chr2_3:36584258-36584277 | None:intergenic | 40.0% | |
| ! | ATTTTCTGCTGTCCAAGTTC+AGG | + | chr2_3:36584298-36584317 | None:intergenic | 40.0% |
| TTGGTGTAGCTTAGTTGGAA+TGG | + | chr2_3:36584346-36584365 | None:intergenic | 40.0% | |
| TTCCAACTAAGCTACACCAA+TGG | - | chr2_3:36584346-36584365 | Msa0289970:intron | 40.0% | |
| GCCAAGACACATTAGACTAA+TGG | - | chr2_3:36584368-36584387 | Msa0289970:intron | 40.0% | |
| CGGTTGAGGGATAAAATGAA+AGG | + | chr2_3:36584657-36584676 | None:intergenic | 40.0% | |
| ! | AAAGTCTGATGATGACACGA+TGG | + | chr2_3:36584823-36584842 | None:intergenic | 40.0% |
| ! | GACTTTTACTACCTTGACTG+TGG | - | chr2_3:36584837-36584856 | Msa0289970:intron | 40.0% |
| GACTGAAGAAGAAGCGAAAT+TGG | - | chr2_3:36584992-36585011 | Msa0289970:intron | 40.0% | |
| !!! | GAAGCGAAATTGGTTTTAGG+TGG | - | chr2_3:36585002-36585021 | Msa0289970:intron | 40.0% |
| !!! | AGCGAAATTGGTTTTAGGTG+GGG | - | chr2_3:36585004-36585023 | Msa0289970:intron | 40.0% |
| ! | ACAAGCCGATGAAACTGTTT+TGG | - | chr2_3:36585046-36585065 | Msa0289970:intron | 40.0% |
| GAATGAATGGAGAAGCAGAA+TGG | - | chr2_3:36585172-36585191 | Msa0289970:CDS | 40.0% | |
| ACACACCAAAGTGGTTGAAT+AGG | + | chr2_3:36585221-36585240 | None:intergenic | 40.0% | |
| ! | TTCAACCACTTTGGTGTGTT+AGG | - | chr2_3:36585222-36585241 | Msa0289970:CDS | 40.0% |
| GAAGGCTAGAATCGTGGAAA+AGG | - | chr2_3:36583502-36583521 | Msa0289970:CDS | 45.0% | |
| CTGCTGGTGATCCCATAATT+AGG | + | chr2_3:36583542-36583561 | None:intergenic | 45.0% | |
| CTAATTATGGGATCACCAGC+AGG | - | chr2_3:36583540-36583559 | Msa0289970:CDS | 45.0% | |
| TTGGAATAGACCTTTCCTGC+TGG | + | chr2_3:36583558-36583577 | None:intergenic | 45.0% | |
| AGAAGTAACGGCTCTCAACT+TGG | + | chr2_3:36583577-36583596 | None:intergenic | 45.0% | |
| AGTTGAGAGCCGTTACTTCT+AGG | - | chr2_3:36583577-36583596 | Msa0289970:CDS | 45.0% | |
| CACTGTTCTCCTTGTCCAAA+AGG | + | chr2_3:36583793-36583812 | None:intergenic | 45.0% | |
| ! | CTTTTGGACAAGGAGAACAG+TGG | - | chr2_3:36583791-36583810 | Msa0289970:CDS | 45.0% |
| ! | CTCTGTCGTTTACCTGAACT+TGG | - | chr2_3:36584283-36584302 | Msa0289970:intron | 45.0% |
| GTCTAATGTGTCTTGGCCAT+TGG | + | chr2_3:36584365-36584384 | None:intergenic | 45.0% | |
| ATGAAGTCATACCAGGTTGC+TGG | - | chr2_3:36584547-36584566 | Msa0289970:intron | 45.0% | |
| ATAGACAACAGTGCGGTTGA+GGG | + | chr2_3:36584670-36584689 | None:intergenic | 45.0% | |
| AATAGACAACAGTGCGGTTG+AGG | + | chr2_3:36584671-36584690 | None:intergenic | 45.0% | |
| TCAACCGCACTGTTGTCTAT+TGG | - | chr2_3:36584670-36584689 | Msa0289970:intron | 45.0% | |
| CAACCGCACTGTTGTCTATT+GGG | - | chr2_3:36584671-36584690 | Msa0289970:intron | 45.0% | |
| CTTCCCAATAGACAACAGTG+CGG | + | chr2_3:36584677-36584696 | None:intergenic | 45.0% | |
| ! | TCTTTAGGGAGAATCGTCGA+TGG | + | chr2_3:36584729-36584748 | None:intergenic | 45.0% |
| TACTACCTTGACTGTGGACA+CGG | - | chr2_3:36584843-36584862 | Msa0289970:intron | 45.0% | |
| ! | CGTGTTTGTCACTTCCTGTT+TGG | + | chr2_3:36584902-36584921 | None:intergenic | 45.0% |
| ACAGGAAGTGACAAACACGA+TGG | - | chr2_3:36584903-36584922 | Msa0289970:intron | 45.0% | |
| GGTGTGGACCTTTCAAAACA+TGG | - | chr2_3:36584934-36584953 | Msa0289970:intron | 45.0% | |
| !!! | GAAATTGGTTTTAGGTGGGG+AGG | - | chr2_3:36585007-36585026 | Msa0289970:intron | 45.0% |
| !! | CTGTTTTGGATTCGCGACTT+TGG | - | chr2_3:36585060-36585079 | Msa0289970:intron | 45.0% |
| TTGGCCTAGAACTTCTGCAA+TGG | - | chr2_3:36585079-36585098 | Msa0289970:intron | 45.0% | |
| TCAGCCATTGCAGAAGTTCT+AGG | + | chr2_3:36585086-36585105 | None:intergenic | 45.0% | |
| GTCAGGCAATAGGGATGAAA+CGG | - | chr2_3:36585115-36585134 | Msa0289970:intron | 45.0% | |
| TCAGGCAATAGGGATGAAAC+GGG | - | chr2_3:36585116-36585135 | Msa0289970:intron | 45.0% | |
| ! | AGAATGGTGAGCAGAGGTAT+AGG | - | chr2_3:36585188-36585207 | Msa0289970:CDS | 45.0% |
| CTGAGCCTATTCAACCACTT+TGG | - | chr2_3:36585213-36585232 | Msa0289970:CDS | 45.0% | |
| GTACTGTGTTGCACATACCA+GGG | + | chr2_3:36585250-36585269 | None:intergenic | 45.0% | |
| TGTACTGTGTTGCACATACC+AGG | + | chr2_3:36585251-36585270 | None:intergenic | 45.0% | |
| GAAGGCTAGAATCGTGGAAA+AGG | - | chr2_3:36583502-36583521 | Msa0289970:CDS | 45.0% | |
| CTGCTGGTGATCCCATAATT+AGG | + | chr2_3:36583542-36583561 | None:intergenic | 45.0% | |
| CTAATTATGGGATCACCAGC+AGG | - | chr2_3:36583540-36583559 | Msa0289970:CDS | 45.0% | |
| TTGGAATAGACCTTTCCTGC+TGG | + | chr2_3:36583558-36583577 | None:intergenic | 45.0% | |
| AGAAGTAACGGCTCTCAACT+TGG | + | chr2_3:36583577-36583596 | None:intergenic | 45.0% | |
| AGTTGAGAGCCGTTACTTCT+AGG | - | chr2_3:36583577-36583596 | Msa0289970:CDS | 45.0% | |
| CACTGTTCTCCTTGTCCAAA+AGG | + | chr2_3:36583793-36583812 | None:intergenic | 45.0% | |
| ! | CTTTTGGACAAGGAGAACAG+TGG | - | chr2_3:36583791-36583810 | Msa0289970:CDS | 45.0% |
| ! | CTCTGTCGTTTACCTGAACT+TGG | - | chr2_3:36584283-36584302 | Msa0289970:intron | 45.0% |
| GTCTAATGTGTCTTGGCCAT+TGG | + | chr2_3:36584365-36584384 | None:intergenic | 45.0% | |
| ATGAAGTCATACCAGGTTGC+TGG | - | chr2_3:36584547-36584566 | Msa0289970:intron | 45.0% | |
| ATAGACAACAGTGCGGTTGA+GGG | + | chr2_3:36584670-36584689 | None:intergenic | 45.0% | |
| AATAGACAACAGTGCGGTTG+AGG | + | chr2_3:36584671-36584690 | None:intergenic | 45.0% | |
| TCAACCGCACTGTTGTCTAT+TGG | - | chr2_3:36584670-36584689 | Msa0289970:intron | 45.0% | |
| CAACCGCACTGTTGTCTATT+GGG | - | chr2_3:36584671-36584690 | Msa0289970:intron | 45.0% | |
| CTTCCCAATAGACAACAGTG+CGG | + | chr2_3:36584677-36584696 | None:intergenic | 45.0% | |
| ! | TCTTTAGGGAGAATCGTCGA+TGG | + | chr2_3:36584729-36584748 | None:intergenic | 45.0% |
| TACTACCTTGACTGTGGACA+CGG | - | chr2_3:36584843-36584862 | Msa0289970:intron | 45.0% | |
| ! | CGTGTTTGTCACTTCCTGTT+TGG | + | chr2_3:36584902-36584921 | None:intergenic | 45.0% |
| ACAGGAAGTGACAAACACGA+TGG | - | chr2_3:36584903-36584922 | Msa0289970:intron | 45.0% | |
| GGTGTGGACCTTTCAAAACA+TGG | - | chr2_3:36584934-36584953 | Msa0289970:intron | 45.0% | |
| !!! | GAAATTGGTTTTAGGTGGGG+AGG | - | chr2_3:36585007-36585026 | Msa0289970:intron | 45.0% |
| !! | CTGTTTTGGATTCGCGACTT+TGG | - | chr2_3:36585060-36585079 | Msa0289970:intron | 45.0% |
| TTGGCCTAGAACTTCTGCAA+TGG | - | chr2_3:36585079-36585098 | Msa0289970:intron | 45.0% | |
| TCAGCCATTGCAGAAGTTCT+AGG | + | chr2_3:36585086-36585105 | None:intergenic | 45.0% | |
| GTCAGGCAATAGGGATGAAA+CGG | - | chr2_3:36585115-36585134 | Msa0289970:intron | 45.0% | |
| TCAGGCAATAGGGATGAAAC+GGG | - | chr2_3:36585116-36585135 | Msa0289970:intron | 45.0% | |
| ! | AGAATGGTGAGCAGAGGTAT+AGG | - | chr2_3:36585188-36585207 | Msa0289970:CDS | 45.0% |
| CTGAGCCTATTCAACCACTT+TGG | - | chr2_3:36585213-36585232 | Msa0289970:CDS | 45.0% | |
| GTACTGTGTTGCACATACCA+GGG | + | chr2_3:36585250-36585269 | None:intergenic | 45.0% | |
| TGTACTGTGTTGCACATACC+AGG | + | chr2_3:36585251-36585270 | None:intergenic | 45.0% | |
| TGCATCGAAGGCTAGAATCG+TGG | - | chr2_3:36583496-36583515 | Msa0289970:CDS | 50.0% | |
| TATGGGATCACCAGCAGGAA+AGG | - | chr2_3:36583545-36583564 | Msa0289970:CDS | 50.0% | |
| ! | GAGAGCCGTTACTTCTAGGA+TGG | - | chr2_3:36583581-36583600 | Msa0289970:CDS | 50.0% |
| GGCCATTGGTGTAGCTTAGT+TGG | + | chr2_3:36584351-36584370 | None:intergenic | 50.0% | |
| ! | AGGGGTGTGAGTTGTGTTTG+AGG | + | chr2_3:36584402-36584421 | None:intergenic | 50.0% |
| ! | GGATCAGTTTTCCAGCAACC+TGG | + | chr2_3:36584561-36584580 | None:intergenic | 50.0% |
| GGAGAATCGTCGATGGAACA+TGG | + | chr2_3:36584722-36584741 | None:intergenic | 50.0% | |
| GGAAGTGACAAACACGATGG+CGG | - | chr2_3:36584906-36584925 | Msa0289970:intron | 50.0% | |
| AGTCCTTGTGGTCAGGCAAT+AGG | - | chr2_3:36585105-36585124 | Msa0289970:intron | 50.0% | |
| GTCCTTGTGGTCAGGCAATA+GGG | - | chr2_3:36585106-36585125 | Msa0289970:intron | 50.0% | |
| ATCCCTATTGCCTGACCACA+AGG | + | chr2_3:36585111-36585130 | None:intergenic | 50.0% | |
| AGAAGCAGAATGGTGAGCAG+AGG | - | chr2_3:36585182-36585201 | Msa0289970:CDS | 50.0% | |
| GGGTTCCTAACACACCAAAG+TGG | + | chr2_3:36585230-36585249 | None:intergenic | 50.0% | |
| ! | CTTTGGTGTGTTAGGAACCC+TGG | - | chr2_3:36585230-36585249 | Msa0289970:CDS | 50.0% |
| TGCATCGAAGGCTAGAATCG+TGG | - | chr2_3:36583496-36583515 | Msa0289970:CDS | 50.0% | |
| TATGGGATCACCAGCAGGAA+AGG | - | chr2_3:36583545-36583564 | Msa0289970:CDS | 50.0% | |
| ! | GAGAGCCGTTACTTCTAGGA+TGG | - | chr2_3:36583581-36583600 | Msa0289970:CDS | 50.0% |
| GGCCATTGGTGTAGCTTAGT+TGG | + | chr2_3:36584351-36584370 | None:intergenic | 50.0% | |
| ! | AGGGGTGTGAGTTGTGTTTG+AGG | + | chr2_3:36584402-36584421 | None:intergenic | 50.0% |
| ! | GGATCAGTTTTCCAGCAACC+TGG | + | chr2_3:36584561-36584580 | None:intergenic | 50.0% |
| GGAGAATCGTCGATGGAACA+TGG | + | chr2_3:36584722-36584741 | None:intergenic | 50.0% | |
| GGAAGTGACAAACACGATGG+CGG | - | chr2_3:36584906-36584925 | Msa0289970:intron | 50.0% | |
| AGTCCTTGTGGTCAGGCAAT+AGG | - | chr2_3:36585105-36585124 | Msa0289970:intron | 50.0% | |
| GTCCTTGTGGTCAGGCAATA+GGG | - | chr2_3:36585106-36585125 | Msa0289970:intron | 50.0% | |
| ATCCCTATTGCCTGACCACA+AGG | + | chr2_3:36585111-36585130 | None:intergenic | 50.0% | |
| AGAAGCAGAATGGTGAGCAG+AGG | - | chr2_3:36585182-36585201 | Msa0289970:CDS | 50.0% | |
| GGGTTCCTAACACACCAAAG+TGG | + | chr2_3:36585230-36585249 | None:intergenic | 50.0% | |
| ! | CTTTGGTGTGTTAGGAACCC+TGG | - | chr2_3:36585230-36585249 | Msa0289970:CDS | 50.0% |
| ! | CTGATGATGACACGATGGCG+TGG | + | chr2_3:36584818-36584837 | None:intergenic | 55.0% |
| TGTGGACACGGCGACTTTAC+TGG | - | chr2_3:36584855-36584874 | Msa0289970:intron | 55.0% | |
| ! | ACAAACACGATGGCGGCTCT+TGG | - | chr2_3:36584913-36584932 | Msa0289970:intron | 55.0% |
| CTGCAATGGCTGAGTCCTTG+TGG | - | chr2_3:36585093-36585112 | Msa0289970:intron | 55.0% | |
| ATGGCTGAGTCCTTGTGGTC+AGG | - | chr2_3:36585098-36585117 | Msa0289970:intron | 55.0% | |
| ! | CTGATGATGACACGATGGCG+TGG | + | chr2_3:36584818-36584837 | None:intergenic | 55.0% |
| TGTGGACACGGCGACTTTAC+TGG | - | chr2_3:36584855-36584874 | Msa0289970:intron | 55.0% | |
| ! | ACAAACACGATGGCGGCTCT+TGG | - | chr2_3:36584913-36584932 | Msa0289970:intron | 55.0% |
| CTGCAATGGCTGAGTCCTTG+TGG | - | chr2_3:36585093-36585112 | Msa0289970:intron | 55.0% | |
| ATGGCTGAGTCCTTGTGGTC+AGG | - | chr2_3:36585098-36585117 | Msa0289970:intron | 55.0% | |
| AGTCGCCGTGTCCACAGTCA+AGG | + | chr2_3:36584851-36584870 | None:intergenic | 60.0% | |
| TAGGTGGGGAGGTAGCGTTG+TGG | - | chr2_3:36585018-36585037 | Msa0289970:intron | 60.0% | |
| ! | GGGTCTGAAGCGATACGCAG+AGG | - | chr2_3:36585136-36585155 | Msa0289970:intron | 60.0% |
| AGTCGCCGTGTCCACAGTCA+AGG | + | chr2_3:36584851-36584870 | None:intergenic | 60.0% | |
| TAGGTGGGGAGGTAGCGTTG+TGG | - | chr2_3:36585018-36585037 | Msa0289970:intron | 60.0% | |
| ! | GGGTCTGAAGCGATACGCAG+AGG | - | chr2_3:36585136-36585155 | Msa0289970:intron | 60.0% |
| ! | CACGATGGCGGCTCTTGGTG+TGG | - | chr2_3:36584918-36584937 | Msa0289970:intron | 65.0% |
| ! | CACGATGGCGGCTCTTGGTG+TGG | - | chr2_3:36584918-36584937 | Msa0289970:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 36583434 | 36585280 | 36583434 | ID=Msa0289970;Name=Msa0289970 |
| chr2_3 | mRNA | 36583434 | 36585280 | 36583434 | ID=Msa0289970-mRNA-1;Parent=Msa0289970;Name=Msa0289970-mRNA-1;_AED=0.91;_eAED=0.94;_QI=0|0|0|0.5|1|1|2|0|283 |
| chr2_3 | exon | 36585148 | 36585280 | 36585148 | ID=Msa0289970-mRNA-1:exon:11972;Parent=Msa0289970-mRNA-1 |
| chr2_3 | exon | 36583434 | 36584152 | 36583434 | ID=Msa0289970-mRNA-1:exon:11971;Parent=Msa0289970-mRNA-1 |
| chr2_3 | CDS | 36585148 | 36585280 | 36585148 | ID=Msa0289970-mRNA-1:cds;Parent=Msa0289970-mRNA-1 |
| chr2_3 | CDS | 36583434 | 36584152 | 36583434 | ID=Msa0289970-mRNA-1:cds;Parent=Msa0289970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
