AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0890250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0890250 MtrunA17_Chr6g0471271 96.903 226 7 0 1 226 1 226 2.81e-161 444
Msa0890250 MtrunA17_Chr1g0197271 44.944 89 47 1 129 215 5 93 1.71e-21 85.5
Msa0890250 MtrunA17_Chr1g0188891 45.882 85 44 1 133 215 9 93 5.52e-21 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0890250 AT1G05190.1 76.106 226 51 1 1 226 1 223 1.25e-125 355
Msa0890250 AT2G18400.1 46.067 89 46 1 129 215 5 93 6.17e-23 89.7

Find 76 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAAGAAACTTCAACTTAT+TGG 0.159385 6_1:+63078792 Msa0890250:CDS
CCCTTACCTTTGTAGGGTTC+TGG 0.218928 6_1:-63079002 None:intergenic
CAACAAGAGATAAATTTAAA+AGG 0.235266 6_1:-63079104 None:intergenic
ACCAGTTGAGTTGGACTTAT+AGG 0.253284 6_1:-63079237 None:intergenic
TCAGGGATTGTCATCTTAAC+AGG 0.297573 6_1:-63078876 None:intergenic
TTTGATACCCTTACCTTTGT+AGG 0.300119 6_1:-63079009 None:intergenic
ACCTTCACTTTGAGACCTTC+AGG 0.300210 6_1:-63078894 None:intergenic
TTGCGGCTTCGATTAGAAAA+TGG 0.305439 6_1:+63078973 Msa0890250:CDS
ATCCAATGTAACCATCAAAA+TGG 0.306445 6_1:+63077072 Msa0890250:CDS
GAATGTAAGGAATCACGAAT+TGG 0.344454 6_1:+63077028 Msa0890250:CDS
TTTACAAGTGAAAGGTCCTT+TGG 0.350575 6_1:+63077105 Msa0890250:CDS
CTTCGGTTATACTGTGTCTA+TGG 0.354883 6_1:-63075852 None:intergenic
ACATTGGATGGAACGGGAAT+TGG 0.363859 6_1:-63077058 None:intergenic
AACTTATCCTCGAGAAGTTA+AGG 0.378844 6_1:+63077141 Msa0890250:CDS
AACGAAGTAGTCTTGAATCT+TGG 0.379551 6_1:+63078843 Msa0890250:CDS
AGGTTGAGAGGCAAGAAGAA+GGG 0.383370 6_1:+63077161 Msa0890250:CDS
AGGAGAAAGGAAGGAAAAGC+AGG 0.383827 6_1:+63079050 Msa0890250:CDS
AAACGGTAACTACTGTTTGT+TGG 0.403849 6_1:-63075813 None:intergenic
TGGTTGGTTACGCTCTTTGT+TGG 0.408423 6_1:-63075782 None:intergenic
TTCATGTGCTCCTGCTACTC+AGG 0.420074 6_1:+63076982 Msa0890250:CDS
ATGGTTACATTGGATGGAAC+GGG 0.421850 6_1:-63077064 None:intergenic
TCCTATAAGTCCAACTCAAC+TGG 0.421889 6_1:+63079236 Msa0890250:three_prime_UTR
GGATATGACAAGTCTGAGAT+TGG 0.426355 6_1:+63078945 Msa0890250:CDS
AACAAGAGATAAATTTAAAA+GGG 0.426384 6_1:-63079103 None:intergenic
ATATCCACTAACTGTGATTC+TGG 0.428194 6_1:-63078928 None:intergenic
TTACAAGTGAAAGGTCCTTT+GGG 0.428296 6_1:+63077106 Msa0890250:CDS
GGTTATCGTGCTATGGTAGA+AGG 0.428439 6_1:+63078819 Msa0890250:CDS
GTAAGGCAGTCGAAACTAGA+AGG 0.432413 6_1:+63077197 Msa0890250:CDS
AACACCAGAATCACAGTTAG+TGG 0.439924 6_1:+63078924 Msa0890250:CDS
GTCTGAGATTGGGCAGTTTG+CGG 0.442471 6_1:+63078956 Msa0890250:CDS
AAGGTTGAGAGGCAAGAAGA+AGG 0.452066 6_1:+63077160 Msa0890250:CDS
TGTGCTCCTGCTACTCAGGT+TGG 0.454528 6_1:+63076986 Msa0890250:CDS
TAGAAAGACTACCGAATGTA+AGG 0.454853 6_1:+63077015 Msa0890250:CDS
CCTTCACTTTGAGACCTTCA+GGG 0.456450 6_1:-63078893 None:intergenic
CCTTATCCTGTTATCTACTT+CGG 0.464914 6_1:-63075869 None:intergenic
GTATAACCGAAGTAGATAAC+AGG 0.466983 6_1:+63075863 Msa0890250:five_prime_UTR
AATGTAAGGAATCACGAATT+GGG 0.468658 6_1:+63077029 Msa0890250:CDS
GAAGTTGTAAGGAGAAAGGA+AGG 0.473123 6_1:+63079041 Msa0890250:CDS
AATATGAAGATGAAGTTGTA+AGG 0.477736 6_1:+63079030 Msa0890250:CDS
GTAAATTAATCATGGTAAAA+CGG 0.481517 6_1:-63075830 None:intergenic
AATTCGTGATTCCTTACATT+CGG 0.482041 6_1:-63077026 None:intergenic
TTGATACCCTTACCTTTGTA+GGG 0.482564 6_1:-63079008 None:intergenic
GGTTGAGAGGCAAGAAGAAG+GGG 0.482647 6_1:+63077162 Msa0890250:CDS
CCGAAGTAGATAACAGGATA+AGG 0.485746 6_1:+63075869 Msa0890250:five_prime_UTR
AAGAAACCAACCTGAGTAGC+AGG 0.489797 6_1:-63076992 None:intergenic
AGATGAAGTTGTAAGGAGAA+AGG 0.496476 6_1:+63079037 Msa0890250:CDS
TTACCTCTTCGTTTCAACTC+AGG 0.503507 6_1:+63075954 Msa0890250:CDS
TGTCTATGGTAAATTAATCA+TGG 0.518084 6_1:-63075838 None:intergenic
TGGTGTCGGTTATCGTGCTA+TGG 0.520430 6_1:+63078812 Msa0890250:CDS
ATAGTGGTTGGAGTATCTAA+AGG 0.522678 6_1:+63078765 Msa0890250:CDS
TCCAGAACCCTACAAAGGTA+AGG 0.527022 6_1:+63079001 Msa0890250:CDS
AAACTTCAACTTATTGGTGT+CGG 0.535328 6_1:+63078798 Msa0890250:CDS
CTCTCAACCTTAACTTCTCG+AGG 0.537602 6_1:-63077148 None:intergenic
AGCCTTGTGGCTTGTAACAA+TGG 0.539665 6_1:+63075922 Msa0890250:exon
ACAGCATATACCAGTTGAGT+TGG 0.539974 6_1:-63079246 None:intergenic
GATATGACAAGTCTGAGATT+GGG 0.540917 6_1:+63078946 Msa0890250:CDS
GACACTTACGGACAACATAG+TGG 0.544634 6_1:+63078749 Msa0890250:CDS
GGAGAAAGGAAGGAAAAGCA+GGG 0.545189 6_1:+63079051 Msa0890250:CDS
GGGCAATATTTACAAGTGAA+AGG 0.553289 6_1:+63077097 Msa0890250:CDS
AATGTAACCATCAAAATGGA+AGG 0.557563 6_1:+63077076 Msa0890250:CDS
TTACCTTTGTAGGGTTCTGG+AGG 0.564618 6_1:-63078999 None:intergenic
GAACCTGAGTTGAAACGAAG+AGG 0.574279 6_1:-63075957 None:intergenic
GATGGTTACATTGGATGGAA+CGG 0.582292 6_1:-63077065 None:intergenic
GAAGGGCAAATCAAATGCAC+GGG 0.584831 6_1:+63077215 Msa0890250:CDS
AGAAGGGCAAATCAAATGCA+CGG 0.586479 6_1:+63077214 Msa0890250:CDS
CCCTGAAGGTCTCAAAGTGA+AGG 0.587268 6_1:+63078893 Msa0890250:CDS
CTCGAGAAGTTAAGGTTGAG+AGG 0.593903 6_1:+63077149 Msa0890250:CDS
CTTACGGACAACATAGTGGT+TGG 0.597440 6_1:+63078753 Msa0890250:CDS
TAAGGCAGTCGAAACTAGAA+GGG 0.621043 6_1:+63077198 Msa0890250:CDS
CCAGAACCCTACAAAGGTAA+GGG 0.628031 6_1:+63079002 Msa0890250:CDS
ACAAGAGATAAATTTAAAAG+GGG 0.629726 6_1:-63079102 None:intergenic
ATGTAACCATCAAAATGGAA+GGG 0.634581 6_1:+63077077 Msa0890250:CDS
GTTAAGATGACAATCCCTGA+AGG 0.655994 6_1:+63078879 Msa0890250:CDS
AGCCATTGTTACAAGCCACA+AGG 0.662400 6_1:-63075924 None:intergenic
GTTAACGAAAGTTCTCCCAA+AGG 0.680959 6_1:-63077121 None:intergenic
AGACCTCCAGAACCCTACAA+AGG 0.715455 6_1:+63078996 Msa0890250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTATAATTTTTATTT+AGG + chr6_1:63078172-63078191 Msa0890250:intron 0.0%
!!! TTTATTATAATTTTTATTTA+GGG + chr6_1:63078173-63078192 Msa0890250:intron 0.0%
!! AAAACTTAAAAATATATTTG+TGG + chr6_1:63077738-63077757 Msa0890250:intron 10.0%
!! TTAACATTTAATTCATTTAT+TGG + chr6_1:63078036-63078055 Msa0890250:intron 10.0%
!!! TTTTAAATCATGATAATTTA+TGG + chr6_1:63078147-63078166 Msa0890250:intron 10.0%
!! ACTTATTTGTATGATTAAAA+TGG - chr6_1:63076075-63076094 None:intergenic 15.0%
!!! TTATTTCTTCAATTCATAAT+TGG + chr6_1:63076291-63076310 Msa0890250:intron 15.0%
!! TATTTCTTCAATTCATAATT+GGG + chr6_1:63076292-63076311 Msa0890250:intron 15.0%
!!! TGATTTAAAATAACTTAACA+AGG - chr6_1:63078137-63078156 None:intergenic 15.0%
!! ATTAGAATTTGTATTTGATT+AGG + chr6_1:63078253-63078272 Msa0890250:intron 15.0%
!!! TCTAGATAATTCTTTTTTAT+TGG + chr6_1:63078373-63078392 Msa0890250:intron 15.0%
!! AACAAGAGATAAATTTAAAA+GGG - chr6_1:63079106-63079125 None:intergenic 15.0%
!! GTAAATTAATCATGGTAAAA+CGG - chr6_1:63075833-63075852 None:intergenic 20.0%
!! ATCATACAAATAAGTTTCAT+CGG + chr6_1:63076080-63076099 Msa0890250:intron 20.0%
!!! TAACATTTTGAACTCTTTAA+CGG + chr6_1:63076234-63076253 Msa0890250:intron 20.0%
!! ATAGTGTTGTAAATATTTGA+TGG + chr6_1:63076407-63076426 Msa0890250:intron 20.0%
!!! AAAGAAAAGAACAATTGTTT+TGG + chr6_1:63076799-63076818 Msa0890250:intron 20.0%
!!! AATTTTAAGTCATCTTTTGT+TGG + chr6_1:63076938-63076957 Msa0890250:CDS 20.0%
!!! TAAGTTTTTTGTCATATAAG+CGG - chr6_1:63077726-63077745 None:intergenic 20.0%
!!! GTTAGTTATTTTTCTTTTGT+GGG + chr6_1:63077760-63077779 Msa0890250:intron 20.0%
!! AATCATAAGCATTAAATACT+TGG - chr6_1:63078354-63078373 None:intergenic 20.0%
!!! GTCTATATTTTTGTATGTAT+GGG + chr6_1:63078590-63078609 Msa0890250:intron 20.0%
!! ACAAGAGATAAATTTAAAAG+GGG - chr6_1:63079105-63079124 None:intergenic 20.0%
!! CAACAAGAGATAAATTTAAA+AGG - chr6_1:63079107-63079126 None:intergenic 20.0%
!!! TTTTCATTGTTTGTTAGTAA+TGG + chr6_1:63079128-63079147 Msa0890250:three_prime_UTR 20.0%
!!! AAATATGAATTTCTTTTGCT+CGG - chr6_1:63079168-63079187 None:intergenic 20.0%
!! TTTGTTGGATTTTTATTGGT+TGG - chr6_1:63075801-63075820 None:intergenic 25.0%
!!! ACTGTTTGTTGGATTTTTAT+TGG - chr6_1:63075805-63075824 None:intergenic 25.0%
! TGTCTATGGTAAATTAATCA+TGG - chr6_1:63075841-63075860 None:intergenic 25.0%
! TGGTAACTAAAACACAAAAT+GGG - chr6_1:63076188-63076207 None:intergenic 25.0%
! ATGGTAACTAAAACACAAAA+TGG - chr6_1:63076189-63076208 None:intergenic 25.0%
!!! CTCAAATGTTCTAAGAAAAA+TGG - chr6_1:63076208-63076227 None:intergenic 25.0%
! GTTAAAGAGTTCAAAATGTT+AGG - chr6_1:63076235-63076254 None:intergenic 25.0%
! AATTCATAATTGGGTCAAAA+GGG + chr6_1:63076301-63076320 Msa0890250:intron 25.0%
! AAAGGGTTATAATTATTTGC+TGG + chr6_1:63076318-63076337 Msa0890250:intron 25.0%
! TTTGATGGAATTCAATGAAA+TGG + chr6_1:63076422-63076441 Msa0890250:intron 25.0%
!!! AATTGTTTTGGTTGCTTTAT+TGG + chr6_1:63076811-63076830 Msa0890250:intron 25.0%
! TGACTTAAAATTGCTGAAAT+AGG - chr6_1:63076930-63076949 None:intergenic 25.0%
!!! GGTTAGTTATTTTTCTTTTG+TGG + chr6_1:63077759-63077778 Msa0890250:intron 25.0%
! TATCATTATGCTATGATCAT+TGG - chr6_1:63078005-63078024 None:intergenic 25.0%
! TAGGATTATAAATACCACTT+TGG + chr6_1:63078272-63078291 Msa0890250:intron 25.0%
! GTATCAAATCTGGAAAATAT+AGG - chr6_1:63078301-63078320 None:intergenic 25.0%
!! TTTTCATAAAGAGAGAGAAA+TGG + chr6_1:63078453-63078472 Msa0890250:intron 25.0%
!!! TTTTCTGTTTCTATTGAATC+TGG - chr6_1:63078523-63078542 None:intergenic 25.0%
!!! GGTCTATATTTTTGTATGTA+TGG + chr6_1:63078589-63078608 Msa0890250:intron 25.0%
! TAGAAACGATAATTTCACAT+TGG + chr6_1:63078613-63078632 Msa0890250:intron 25.0%
!! TTGTGCAAATAAACGTTTTT+AGG + chr6_1:63078727-63078746 Msa0890250:intron 25.0%
! GAAAAGAAACTTCAACTTAT+TGG + chr6_1:63078792-63078811 Msa0890250:CDS 25.0%
! AATATGAAGATGAAGTTGTA+AGG + chr6_1:63079030-63079049 Msa0890250:CDS 25.0%
!! TTTTTATGAAAGTCAAAGCA+TGG + chr6_1:63079211-63079230 Msa0890250:three_prime_UTR 25.0%
CAATTCATAATTGGGTCAAA+AGG + chr6_1:63076300-63076319 Msa0890250:intron 30.0%
TGTTATTCACATTGTTAGTG+AGG + chr6_1:63076521-63076540 Msa0890250:intron 30.0%
!! ATTGTTAGTGAGGTGTTTTT+AGG + chr6_1:63076531-63076550 Msa0890250:intron 30.0%
TCTGGATGAAATTATTTGTG+TGG + chr6_1:63076609-63076628 Msa0890250:intron 30.0%
TGAAATTATTTGTGTGGAAC+TGG + chr6_1:63076615-63076634 Msa0890250:intron 30.0%
GTTTGGATTGTATGTGAATT+TGG + chr6_1:63076667-63076686 Msa0890250:intron 30.0%
TGAACTTAACGAAATCACAA+AGG - chr6_1:63076755-63076774 None:intergenic 30.0%
TATACAAAGATCTTGATGTG+AGG + chr6_1:63076841-63076860 Msa0890250:intron 30.0%
! GGCTTTTATTAGGTTATAGT+AGG + chr6_1:63076862-63076881 Msa0890250:intron 30.0%
AATTCGTGATTCCTTACATT+CGG - chr6_1:63077029-63077048 None:intergenic 30.0%
AATGTAAGGAATCACGAATT+GGG + chr6_1:63077029-63077048 Msa0890250:CDS 30.0%
!! ATTTTGATGGTTACATTGGA+TGG - chr6_1:63077073-63077092 None:intergenic 30.0%
ATCCAATGTAACCATCAAAA+TGG + chr6_1:63077072-63077091 Msa0890250:CDS 30.0%
!! TTCCATTTTGATGGTTACAT+TGG - chr6_1:63077077-63077096 None:intergenic 30.0%
AATGTAACCATCAAAATGGA+AGG + chr6_1:63077076-63077095 Msa0890250:CDS 30.0%
ATGTAACCATCAAAATGGAA+GGG + chr6_1:63077077-63077096 Msa0890250:CDS 30.0%
AAAAATAGATGTTGCCAATG+AGG + chr6_1:63077289-63077308 Msa0890250:intron 30.0%
AATGATAAAGATCTGAACCA+TGG - chr6_1:63077386-63077405 None:intergenic 30.0%
!!! TTTAGTTTTCACCGATCTAA+AGG - chr6_1:63077445-63077464 None:intergenic 30.0%
TGAGTGAAATTGAGCAAATT+GGG + chr6_1:63077597-63077616 Msa0890250:intron 30.0%
ACAGTGAAATTGAGCATATT+GGG + chr6_1:63077641-63077660 Msa0890250:intron 30.0%
!!! TTTTTTGTCATATAAGCGGT+GGG - chr6_1:63077722-63077741 None:intergenic 30.0%
GTTTCAATCAGTATCAAATC+TGG - chr6_1:63078311-63078330 None:intergenic 30.0%
ATTGAAACAAAATGCTGTCT+TGG + chr6_1:63078323-63078342 Msa0890250:intron 30.0%
TTGAAACAAAATGCTGTCTT+GGG + chr6_1:63078324-63078343 Msa0890250:intron 30.0%
AACTACTTGTAGAAAATGCT+AGG - chr6_1:63078423-63078442 None:intergenic 30.0%
AAGTAACTAATCGTATGAGT+AGG + chr6_1:63078476-63078495 Msa0890250:intron 30.0%
!!! AAACGTTTTTAGGACACTTA+CGG + chr6_1:63078737-63078756 Msa0890250:intron 30.0%
AAACTTCAACTTATTGGTGT+CGG + chr6_1:63078798-63078817 Msa0890250:CDS 30.0%
AAACGGTAACTACTGTTTGT+TGG - chr6_1:63075816-63075835 None:intergenic 35.0%
GTATAACCGAAGTAGATAAC+AGG + chr6_1:63075863-63075882 Msa0890250:five_prime_UTR 35.0%
CCTTATCCTGTTATCTACTT+CGG - chr6_1:63075872-63075891 None:intergenic 35.0%
TTGTGGGTGTATGTTGAATT+TGG + chr6_1:63076351-63076370 Msa0890250:intron 35.0%
TATCATCCACAACTACATCA+TGG - chr6_1:63076390-63076409 None:intergenic 35.0%
CCAAACATACACGTAGTAAA+AGG - chr6_1:63076653-63076672 None:intergenic 35.0%
! CCTTTTACTACGTGTATGTT+TGG + chr6_1:63076650-63076669 Msa0890250:intron 35.0%
TGTGAATTTGGAGAAATCAC+AGG + chr6_1:63076679-63076698 Msa0890250:intron 35.0%
! CCAAACTTTTGCCAAAATCA+AGG - chr6_1:63076711-63076730 None:intergenic 35.0%
!! CCTTGATTTTGGCAAAAGTT+TGG + chr6_1:63076708-63076727 Msa0890250:intron 35.0%
! CTTGATGTGAGGCTTTTATT+AGG + chr6_1:63076852-63076871 Msa0890250:intron 35.0%
TAGAAAGACTACCGAATGTA+AGG + chr6_1:63077015-63077034 Msa0890250:CDS 35.0%
GAATGTAAGGAATCACGAAT+TGG + chr6_1:63077028-63077047 Msa0890250:CDS 35.0%
! ATATTGCCCTTCCATTTTGA+TGG - chr6_1:63077086-63077105 None:intergenic 35.0%
GGGCAATATTTACAAGTGAA+AGG + chr6_1:63077097-63077116 Msa0890250:CDS 35.0%
TTTACAAGTGAAAGGTCCTT+TGG + chr6_1:63077105-63077124 Msa0890250:CDS 35.0%
TTACAAGTGAAAGGTCCTTT+GGG + chr6_1:63077106-63077125 Msa0890250:CDS 35.0%
AACTTATCCTCGAGAAGTTA+AGG + chr6_1:63077141-63077160 Msa0890250:CDS 35.0%
GAACCATGGATTTCATCTAA+TGG - chr6_1:63077372-63077391 None:intergenic 35.0%
AAACGACTTGTCCTTTAGAT+CGG + chr6_1:63077431-63077450 Msa0890250:intron 35.0%
ACAAGAATGAATTGTGTCAG+AGG - chr6_1:63077510-63077529 None:intergenic 35.0%
GTGAGTGAAATTGAGCAAAT+TGG + chr6_1:63077596-63077615 Msa0890250:intron 35.0%
GACAGTGAAATTGAGCATAT+TGG + chr6_1:63077640-63077659 Msa0890250:intron 35.0%
AATACCAATTTCACTGTCAC+TGG - chr6_1:63077682-63077701 None:intergenic 35.0%
!!! GTTTTTTGTCATATAAGCGG+TGG - chr6_1:63077723-63077742 None:intergenic 35.0%
CATCTATTGATGGAACAGTT+TGG + chr6_1:63077812-63077831 Msa0890250:intron 35.0%
! ATAGTAGGTTTTCACTACTG+TGG + chr6_1:63077859-63077878 Msa0890250:intron 35.0%
TCTGAGTCGTTAGTATCAAA+CGG + chr6_1:63077917-63077936 Msa0890250:intron 35.0%
TATGATCATTGGCAAGGATT+TGG - chr6_1:63077994-63078013 None:intergenic 35.0%
TTATGCTATGATCATTGGCA+AGG - chr6_1:63078000-63078019 None:intergenic 35.0%
GAAAATATAGGTAGCCAAAG+TGG - chr6_1:63078289-63078308 None:intergenic 35.0%
CAGAAAACAATATTCTGTCC+TGG + chr6_1:63078536-63078555 Msa0890250:intron 35.0%
ATATTCTGTCCTGGTATGTT+TGG + chr6_1:63078545-63078564 Msa0890250:intron 35.0%
! TATGTTTGGATGGAGGATTT+TGG + chr6_1:63078559-63078578 Msa0890250:intron 35.0%
! ATAGTGGTTGGAGTATCTAA+AGG + chr6_1:63078765-63078784 Msa0890250:CDS 35.0%
! AACGAAGTAGTCTTGAATCT+TGG + chr6_1:63078843-63078862 Msa0890250:CDS 35.0%
ATATCCACTAACTGTGATTC+TGG - chr6_1:63078931-63078950 None:intergenic 35.0%
! GATATGACAAGTCTGAGATT+GGG + chr6_1:63078946-63078965 Msa0890250:CDS 35.0%
TTGATACCCTTACCTTTGTA+GGG - chr6_1:63079011-63079030 None:intergenic 35.0%
TTTGATACCCTTACCTTTGT+AGG - chr6_1:63079012-63079031 None:intergenic 35.0%
AGATGAAGTTGTAAGGAGAA+AGG + chr6_1:63079037-63079056 Msa0890250:CDS 35.0%
CTTCGGTTATACTGTGTCTA+TGG - chr6_1:63075855-63075874 None:intergenic 40.0%
CCGAAGTAGATAACAGGATA+AGG + chr6_1:63075869-63075888 Msa0890250:five_prime_UTR 40.0%
TTACCTCTTCGTTTCAACTC+AGG + chr6_1:63075954-63075973 Msa0890250:CDS 40.0%
! TTGCTGGTTGAAGCAATTTG+TGG + chr6_1:63076334-63076353 Msa0890250:intron 40.0%
! TGCTGGTTGAAGCAATTTGT+GGG + chr6_1:63076335-63076354 Msa0890250:intron 40.0%
GAATCACCATGATGTAGTTG+TGG + chr6_1:63076381-63076400 Msa0890250:intron 40.0%
ATTTCATCCAGAATTCCCTG+TGG - chr6_1:63076601-63076620 None:intergenic 40.0%
CATACACGTAGTAAAAGGCA+TGG - chr6_1:63076648-63076667 None:intergenic 40.0%
! ACAGGAAGTCTCCTTGATTT+TGG + chr6_1:63076697-63076716 Msa0890250:intron 40.0%
ATGGTTACATTGGATGGAAC+GGG - chr6_1:63077067-63077086 None:intergenic 40.0%
GATGGTTACATTGGATGGAA+CGG - chr6_1:63077068-63077087 None:intergenic 40.0%
GTTAACGAAAGTTCTCCCAA+AGG - chr6_1:63077124-63077143 None:intergenic 40.0%
!! GCAAGAAGAAGGGGTTTTAA+AGG + chr6_1:63077171-63077190 Msa0890250:CDS 40.0%
!!! AGGGGTTTTAAAGGTCAGTA+AGG + chr6_1:63077180-63077199 Msa0890250:CDS 40.0%
TAAGGCAGTCGAAACTAGAA+GGG + chr6_1:63077198-63077217 Msa0890250:CDS 40.0%
AGAAGGGCAAATCAAATGCA+CGG + chr6_1:63077214-63077233 Msa0890250:CDS 40.0%
CAGAGAATGTGAATCCTCAT+TGG - chr6_1:63077306-63077325 None:intergenic 40.0%
CAGCCATTAGATGAAATCCA+TGG + chr6_1:63077366-63077385 Msa0890250:intron 40.0%
TTGTTGTCCTCCATAGCAAT+TGG + chr6_1:63077526-63077545 Msa0890250:intron 40.0%
ATTTCACTCACAAGTGGCAT+GGG - chr6_1:63077587-63077606 None:intergenic 40.0%
AATTTCACTCACAAGTGGCA+TGG - chr6_1:63077588-63077607 None:intergenic 40.0%
TGCTCAATTTCACTCACAAG+TGG - chr6_1:63077593-63077612 None:intergenic 40.0%
ATGCTCAATTTCACTGTCAC+TGG - chr6_1:63077638-63077657 None:intergenic 40.0%
AGTACCAGTGACAGTGAAAT+TGG + chr6_1:63077631-63077650 Msa0890250:intron 40.0%
! AGGTTTTCACTACTGTGGTT+TGG + chr6_1:63077864-63077883 Msa0890250:intron 40.0%
! GGTTTTCACTACTGTGGTTT+GGG + chr6_1:63077865-63077884 Msa0890250:intron 40.0%
!! TAACTTTAGAGCGTGAATGC+AGG + chr6_1:63077947-63077966 Msa0890250:intron 40.0%
TTTATCGTCACGACTCGAAA+AGG - chr6_1:63078067-63078086 None:intergenic 40.0%
ACAACAGTTTAGATGCAGCA+TGG + chr6_1:63078107-63078126 Msa0890250:intron 40.0%
GGAAAATAACATGTGCAGTG+AGG - chr6_1:63078402-63078421 None:intergenic 40.0%
TAGGCTCCATTGAATTTGAC+AGG + chr6_1:63078495-63078514 Msa0890250:intron 40.0%
CTGGTTCCTGTCAAATTCAA+TGG - chr6_1:63078504-63078523 None:intergenic 40.0%
TCAGGGATTGTCATCTTAAC+AGG - chr6_1:63078879-63078898 None:intergenic 40.0%
GTTAAGATGACAATCCCTGA+AGG + chr6_1:63078879-63078898 Msa0890250:CDS 40.0%
AACACCAGAATCACAGTTAG+TGG + chr6_1:63078924-63078943 Msa0890250:CDS 40.0%
! GGATATGACAAGTCTGAGAT+TGG + chr6_1:63078945-63078964 Msa0890250:CDS 40.0%
TTGCGGCTTCGATTAGAAAA+TGG + chr6_1:63078973-63078992 Msa0890250:CDS 40.0%
GAAGTTGTAAGGAGAAAGGA+AGG + chr6_1:63079041-63079060 Msa0890250:CDS 40.0%
TCCTATAAGTCCAACTCAAC+TGG + chr6_1:63079236-63079255 Msa0890250:three_prime_UTR 40.0%
!! ACCAGTTGAGTTGGACTTAT+AGG - chr6_1:63079240-63079259 None:intergenic 40.0%
ACAGCATATACCAGTTGAGT+TGG - chr6_1:63079249-63079268 None:intergenic 40.0%
TCGCAAAAAGCAAAGCCTTG+TGG + chr6_1:63075909-63075928 Msa0890250:five_prime_UTR 45.0%
! AGCCTTGTGGCTTGTAACAA+TGG + chr6_1:63075922-63075941 Msa0890250:exon 45.0%
AGCCATTGTTACAAGCCACA+AGG - chr6_1:63075927-63075946 None:intergenic 45.0%
! GAACCTGAGTTGAAACGAAG+AGG - chr6_1:63075960-63075979 None:intergenic 45.0%
TACTTTGTTAGCAGTGCCAC+AGG + chr6_1:63076582-63076601 Msa0890250:intron 45.0%
ACTTTGTTAGCAGTGCCACA+GGG + chr6_1:63076583-63076602 Msa0890250:intron 45.0%
! CTTTTGTTGGCGAGAGAAGT+AGG + chr6_1:63076951-63076970 Msa0890250:CDS 45.0%
AAGAAACCAACCTGAGTAGC+AGG - chr6_1:63076995-63077014 None:intergenic 45.0%
ACATTGGATGGAACGGGAAT+TGG - chr6_1:63077061-63077080 None:intergenic 45.0%
CTCTCAACCTTAACTTCTCG+AGG - chr6_1:63077151-63077170 None:intergenic 45.0%
CTCGAGAAGTTAAGGTTGAG+AGG + chr6_1:63077149-63077168 Msa0890250:CDS 45.0%
AAGGTTGAGAGGCAAGAAGA+AGG + chr6_1:63077160-63077179 Msa0890250:CDS 45.0%
AGGTTGAGAGGCAAGAAGAA+GGG + chr6_1:63077161-63077180 Msa0890250:CDS 45.0%
GTAAGGCAGTCGAAACTAGA+AGG + chr6_1:63077197-63077216 Msa0890250:CDS 45.0%
GAAGGGCAAATCAAATGCAC+GGG + chr6_1:63077215-63077234 Msa0890250:CDS 45.0%
! ATCAAATGCACGGGCTTTTC+AGG + chr6_1:63077224-63077243 Msa0890250:CDS 45.0%
GAAAGGGGAGAGATTGATGA+TGG - chr6_1:63077473-63077492 None:intergenic 45.0%
GTGTCGAAAAAGGGAGAAAG+GGG - chr6_1:63077488-63077507 None:intergenic 45.0%
! GGTGTCGAAAAAGGGAGAAA+GGG - chr6_1:63077489-63077508 None:intergenic 45.0%
!! AGGTGTCGAAAAAGGGAGAA+AGG - chr6_1:63077490-63077509 None:intergenic 45.0%
!! GTGTCAGAGGTGTCGAAAAA+GGG - chr6_1:63077497-63077516 None:intergenic 45.0%
!! TGTGTCAGAGGTGTCGAAAA+AGG - chr6_1:63077498-63077517 None:intergenic 45.0%
ATCCATGCCAATTGCTATGG+AGG - chr6_1:63077536-63077555 None:intergenic 45.0%
GCAATCCATGCCAATTGCTA+TGG - chr6_1:63077539-63077558 None:intergenic 45.0%
! CAAGTGGCATGGGTTGAAAT+TGG - chr6_1:63077577-63077596 None:intergenic 45.0%
GACGAGATCGCATCTATTGA+TGG + chr6_1:63077802-63077821 Msa0890250:intron 45.0%
TCTGTCCTGGTATGTTTGGA+TGG + chr6_1:63078549-63078568 Msa0890250:intron 45.0%
ATCCTCCATCCAAACATACC+AGG - chr6_1:63078557-63078576 None:intergenic 45.0%
! GTTTGGATGGAGGATTTTGG+AGG + chr6_1:63078562-63078581 Msa0890250:intron 45.0%
!! ATGGAGGATTTTGGAGGACT+AGG + chr6_1:63078568-63078587 Msa0890250:intron 45.0%
GACACTTACGGACAACATAG+TGG + chr6_1:63078749-63078768 Msa0890250:CDS 45.0%
CTTACGGACAACATAGTGGT+TGG + chr6_1:63078753-63078772 Msa0890250:CDS 45.0%
GGTTATCGTGCTATGGTAGA+AGG + chr6_1:63078819-63078838 Msa0890250:CDS 45.0%
!! CCTTCACTTTGAGACCTTCA+GGG - chr6_1:63078896-63078915 None:intergenic 45.0%
!! ACCTTCACTTTGAGACCTTC+AGG - chr6_1:63078897-63078916 None:intergenic 45.0%
! TTACCTTTGTAGGGTTCTGG+AGG - chr6_1:63079002-63079021 None:intergenic 45.0%
TCCAGAACCCTACAAAGGTA+AGG + chr6_1:63079001-63079020 Msa0890250:CDS 45.0%
CCAGAACCCTACAAAGGTAA+GGG + chr6_1:63079002-63079021 Msa0890250:CDS 45.0%
AGGAGAAAGGAAGGAAAAGC+AGG + chr6_1:63079050-63079069 Msa0890250:CDS 45.0%
GGAGAAAGGAAGGAAAAGCA+GGG + chr6_1:63079051-63079070 Msa0890250:CDS 45.0%
TTCATGTGCTCCTGCTACTC+AGG + chr6_1:63076982-63077001 Msa0890250:CDS 50.0%
GGTTGAGAGGCAAGAAGAAG+GGG + chr6_1:63077162-63077181 Msa0890250:CDS 50.0%
GTCCTCCATAGCAATTGGCA+TGG + chr6_1:63077531-63077550 Msa0890250:intron 50.0%
GCGGTGGGAAAGAGTTCAAA+GGG - chr6_1:63077707-63077726 None:intergenic 50.0%
AGCGGTGGGAAAGAGTTCAA+AGG - chr6_1:63077708-63077727 None:intergenic 50.0%
! GGGAGCATATCTCTACGATG+AGG + chr6_1:63077780-63077799 Msa0890250:intron 50.0%
TTTGGAAGACGAGTACGCGT+CGG + chr6_1:63077830-63077849 Msa0890250:intron 50.0%
ACGCGTCGGATACGAATAGT+AGG + chr6_1:63077844-63077863 Msa0890250:intron 50.0%
GTCCTGGTATGTTTGGATGG+AGG + chr6_1:63078552-63078571 Msa0890250:intron 50.0%
!! TGGTGTCGGTTATCGTGCTA+TGG + chr6_1:63078812-63078831 Msa0890250:CDS 50.0%
CCCTGAAGGTCTCAAAGTGA+AGG + chr6_1:63078893-63078912 Msa0890250:CDS 50.0%
! GTCTGAGATTGGGCAGTTTG+CGG + chr6_1:63078956-63078975 Msa0890250:CDS 50.0%
AGACCTCCAGAACCCTACAA+AGG + chr6_1:63078996-63079015 Msa0890250:CDS 50.0%
CCCTTACCTTTGTAGGGTTC+TGG - chr6_1:63079005-63079024 None:intergenic 50.0%
AGCAGTGCCACAGGGAATTC+TGG + chr6_1:63076591-63076610 Msa0890250:intron 55.0%
TGTGCTCCTGCTACTCAGGT+TGG + chr6_1:63076986-63077005 Msa0890250:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 63075783 63079273 63075783 ID=Msa0890250;Name=Msa0890250
chr6_1 mRNA 63075783 63079273 63075783 ID=Msa0890250-mRNA-1;Parent=Msa0890250;Name=Msa0890250-mRNA-1;_AED=0.00;_eAED=0.00;_QI=158|1|1|1|1|1|3|188|226
chr6_1 exon 63075783 63075975 63075783 ID=Msa0890250-mRNA-1:exon:11499;Parent=Msa0890250-mRNA-1
chr6_1 exon 63076937 63077245 63076937 ID=Msa0890250-mRNA-1:exon:11500;Parent=Msa0890250-mRNA-1
chr6_1 exon 63078749 63079273 63078749 ID=Msa0890250-mRNA-1:exon:11501;Parent=Msa0890250-mRNA-1
chr6_1 five_prime_UTR 63075783 63075940 63075783 ID=Msa0890250-mRNA-1:five_prime_utr;Parent=Msa0890250-mRNA-1
chr6_1 CDS 63075941 63075975 63075941 ID=Msa0890250-mRNA-1:cds;Parent=Msa0890250-mRNA-1
chr6_1 CDS 63076937 63077245 63076937 ID=Msa0890250-mRNA-1:cds;Parent=Msa0890250-mRNA-1
chr6_1 CDS 63078749 63079085 63078749 ID=Msa0890250-mRNA-1:cds;Parent=Msa0890250-mRNA-1
chr6_1 three_prime_UTR 63079086 63079273 63079086 ID=Msa0890250-mRNA-1:three_prime_utr;Parent=Msa0890250-mRNA-1
Gene Sequence

>Msa0890250

ATGGCTTCTTCAGTTACCTCTTCGTTTCAACTCAGCAATTTTAAGTCATCTTTTGTTGGCGAGAGAAGTAGGATCAGAGTTTCATGTGCTCCTGCTACTCAGGTTGGTTTCTTTAGAAAGACTACCGAATGTAAGGAATCACGAATTGGGAAACAACCAATTCCCGTTCCATCCAATGTAACCATCAAAATGGAAGGGCAATATTTACAAGTGAAAGGTCCTTTGGGAGAACTTTCGTTAACTTATCCTCGAGAAGTTAAGGTTGAGAGGCAAGAAGAAGGGGTTTTAAAGGTCAGTAAGGCAGTCGAAACTAGAAGGGCAAATCAAATGCACGGGCTTTTCAGGACACTTACGGACAACATAGTGGTTGGAGTATCTAAAGGTTTTGAAAAGAAACTTCAACTTATTGGTGTCGGTTATCGTGCTATGGTAGAAGGAAACGAAGTAGTCTTGAATCTTGGATTTTCGCATCCTGTTAAGATGACAATCCCTGAAGGTCTCAAAGTGAAGGTAGACGAAAACACCAGAATCACAGTTAGTGGATATGACAAGTCTGAGATTGGGCAGTTTGCGGCTTCGATTAGAAAATGGAGACCTCCAGAACCCTACAAAGGTAAGGGTATCAAATATGAAGATGAAGTTGTAAGGAGAAAGGAAGGAAAAGCAGGGAAGAAGAAGTGA

Protein sequence

>Msa0890250

MASSVTSSFQLSNFKSSFVGERSRIRVSCAPATQVGFFRKTTECKESRIGKQPIPVPSNVTIKMEGQYLQVKGPLGELSLTYPREVKVERQEEGVLKVSKAVETRRANQMHGLFRTLTDNIVVGVSKGFEKKLQLIGVGYRAMVEGNEVVLNLGFSHPVKMTIPEGLKVKVDENTRITVSGYDKSEIGQFAASIRKWRPPEPYKGKGIKYEDEVVRRKEGKAGKKK*