Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0290440 | GAU30101.1 | 36.413 | 184 | 107 | 4 | 34 | 216 | 248 | 422 | 7.17e-28 | 124 |
| Msa0290440 | GAU30101.1 | 72.365 | 351 | 86 | 2 | 29 | 368 | 3 | 353 | 0.0 | 535 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0290440 | A0A2Z6ME13 | 36.413 | 184 | 107 | 4 | 34 | 216 | 248 | 422 | 3.42e-28 | 124 |
| Msa0290440 | A0A2Z6ME13 | 72.365 | 351 | 86 | 2 | 29 | 368 | 3 | 353 | 0.0 | 535 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0251980 | Msa0290440 | 0.849207 | 3.750607e-60 | -8.615850e-47 |
| Msa0290440 | Msa0328890 | 0.803365 | 3.609068e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0290440 | MtrunA17_Chr2g0310431 | 93.443 | 61 | 4 | 0 | 28 | 88 | 1 | 61 | 1.50e-37 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0290440 | AT1G16290.2 | 55.848 | 342 | 140 | 1 | 27 | 368 | 9 | 339 | 1.73e-137 | 398 |
| Msa0290440 | AT1G16290.2 | 41.860 | 172 | 90 | 5 | 30 | 200 | 230 | 392 | 9.69e-36 | 135 |
| Msa0290440 | AT1G16290.1 | 55.718 | 341 | 140 | 1 | 28 | 368 | 1 | 330 | 1.32e-136 | 396 |
| Msa0290440 | AT1G16290.1 | 41.860 | 172 | 90 | 5 | 30 | 200 | 221 | 383 | 9.10e-36 | 135 |
Find 88 sgRNAs with CRISPR-Local
Find 383 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAACCACACCATTGCTTTC+TGG | 0.178419 | 2_3:+37699451 | None:intergenic |
| TCGCTGCTGCCTATCTTAAA+TGG | 0.208213 | 2_3:-37700313 | Msa0290440:CDS |
| TCTCACATTGCCATTGTCTT+TGG | 0.208651 | 2_3:-37702481 | Msa0290440:CDS |
| CACCTTTCCATGTGTTTCTT+TGG | 0.223630 | 2_3:+37697571 | None:intergenic |
| GTCAAATAAGGCTGGCCTTC+AGG | 0.281392 | 2_3:+37701608 | None:intergenic |
| ATGAAAAGTTCCCACCAAAA+AGG | 0.299692 | 2_3:+37702528 | None:intergenic |
| TACTTACAGATTTAATCTTT+TGG | 0.302332 | 2_3:+37696320 | None:intergenic |
| GGACCAAGACCTGGAATAAT+GGG | 0.309276 | 2_3:-37695911 | Msa0290440:CDS |
| ACAAATCAACATTGCGCTAT+TGG | 0.313860 | 2_3:-37700093 | Msa0290440:CDS |
| CATGTCTTCTCGAGATGCTT+TGG | 0.317971 | 2_3:+37697640 | None:intergenic |
| GTTCCTGTTCATTCTCATAC+TGG | 0.320423 | 2_3:-37699433 | Msa0290440:CDS |
| AACCACTCGGCACTCACTTC+AGG | 0.325760 | 2_3:+37701677 | None:intergenic |
| TGGACCAAGACCTGGAATAA+TGG | 0.330346 | 2_3:-37695912 | Msa0290440:CDS |
| AATGCAGCTTACAGTGCATT+AGG | 0.331785 | 2_3:-37700401 | Msa0290440:intron |
| ATGCAAAAGATGACACATAT+TGG | 0.332150 | 2_3:-37697667 | Msa0290440:CDS |
| ATTTCAGTCTGTGTCAAATA+AGG | 0.338758 | 2_3:+37701596 | None:intergenic |
| ATCATCCCAGTAGCTGAAAT+TGG | 0.339016 | 2_3:+37701739 | None:intergenic |
| CAACTACTTGTTATAAACTA+TGG | 0.357307 | 2_3:-37700925 | Msa0290440:CDS |
| CACATTGCCATTGTCTTTGG+AGG | 0.360792 | 2_3:-37702478 | Msa0290440:intron |
| ATCCCCATTATTCCAGGTCT+TGG | 0.361266 | 2_3:+37695908 | None:intergenic |
| CGCTGCTGCCTATCTTAAAT+GGG | 0.378650 | 2_3:-37700312 | Msa0290440:CDS |
| GCAATGTGAGAGGGAGAGAT+GGG | 0.381777 | 2_3:+37702493 | None:intergenic |
| TTTATTGTAAGGGCATATAA+AGG | 0.393414 | 2_3:-37700136 | Msa0290440:CDS |
| CATTTATGAAAGGCTTGAAT+AGG | 0.398844 | 2_3:+37700342 | None:intergenic |
| TGTTGATCCTCAGGATTTAG+AGG | 0.405970 | 2_3:-37701714 | Msa0290440:CDS |
| ATTTCCACCCGGGAAAGATA+TGG | 0.406385 | 2_3:+37697521 | None:intergenic |
| TGGCGGCCAATTTCAGCTAC+TGG | 0.408185 | 2_3:-37701745 | Msa0290440:CDS |
| TGCAAAAGATGACACATATT+GGG | 0.418121 | 2_3:-37697666 | Msa0290440:CDS |
| ATCCTGTAATCCGAAAAGTA+TGG | 0.424009 | 2_3:-37697601 | Msa0290440:CDS |
| TTTGAATGTTCTGCCGGAAA+AGG | 0.434853 | 2_3:+37699406 | None:intergenic |
| GAAGTGAAGAGTTTATTGTA+AGG | 0.439744 | 2_3:-37700147 | Msa0290440:CDS |
| AGTTGCATAAGCCCGACATT+AGG | 0.451212 | 2_3:+37700886 | None:intergenic |
| AAGTCAATCCCCATTATTCC+AGG | 0.454568 | 2_3:+37695902 | None:intergenic |
| AAACTGTTGAATGGTTGATA+AGG | 0.469062 | 2_3:-37700855 | Msa0290440:intron |
| GTGTGACACCCATTTAAGAT+AGG | 0.470676 | 2_3:+37700304 | None:intergenic |
| CAGACAGTACTTTGTGCCAT+TGG | 0.471505 | 2_3:-37695968 | Msa0290440:CDS |
| TAGCTGACATTGTTATTAGC+AGG | 0.479632 | 2_3:-37701176 | Msa0290440:CDS |
| AGAAGCGACCATATCTTTCC+CGG | 0.479646 | 2_3:-37697529 | Msa0290440:CDS |
| GGATGATTGTGTTGATCCTC+AGG | 0.480334 | 2_3:-37701723 | Msa0290440:CDS |
| GCTAGCATGCGCTTTGTACA+TGG | 0.485765 | 2_3:-37695938 | Msa0290440:CDS |
| GGCAATGTGAGAGGGAGAGA+TGG | 0.495787 | 2_3:+37702492 | None:intergenic |
| GATCCAGTATGAGAATGAAC+AGG | 0.502115 | 2_3:+37699430 | None:intergenic |
| ATATAAAGGTGGTGCGAGAA+AGG | 0.512227 | 2_3:-37700122 | Msa0290440:CDS |
| AAGTGAAGAGTTTATTGTAA+GGG | 0.519105 | 2_3:-37700146 | Msa0290440:CDS |
| TTTCCGGCAGAACATTCAAA+AGG | 0.520644 | 2_3:-37699403 | Msa0290440:intron |
| TCTTTCCCGGGTGGAAATGA+AGG | 0.529950 | 2_3:-37697516 | Msa0290440:intron |
| GCGAAATACACATTTATGAA+AGG | 0.530750 | 2_3:+37700332 | None:intergenic |
| CAAAGCATCTCGAGAAGACA+TGG | 0.532373 | 2_3:-37697639 | Msa0290440:CDS |
| TTGCGGAACTTGAAAGCGAC+AGG | 0.536427 | 2_3:-37700948 | Msa0290440:CDS |
| CAATGTGAGAGGGAGAGATG+GGG | 0.539043 | 2_3:+37702494 | None:intergenic |
| CAGTCTGTGTCAAATAAGGC+TGG | 0.545568 | 2_3:+37701600 | None:intergenic |
| AATGTGAGAGGGAGAGATGG+GGG | 0.550250 | 2_3:+37702495 | None:intergenic |
| GGCGGCCAATTTCAGCTACT+GGG | 0.552817 | 2_3:-37701744 | Msa0290440:CDS |
| AAATCTAAAGAGCCTAATGT+CGG | 0.556894 | 2_3:-37700898 | Msa0290440:CDS |
| CATGGAGATGGACCAAGACC+TGG | 0.559952 | 2_3:-37695920 | Msa0290440:CDS |
| ATCCAAAGAAACACATGGAA+AGG | 0.561633 | 2_3:-37697573 | Msa0290440:CDS |
| ATTTGACACAGACTGAAATG+AGG | 0.564614 | 2_3:-37701592 | Msa0290440:CDS |
| TATCATTCATATGCTGCAGA+AGG | 0.565685 | 2_3:-37700377 | Msa0290440:CDS |
| AATCTAAAGAGCCTAATGTC+GGG | 0.567958 | 2_3:-37700897 | Msa0290440:CDS |
| CATCTCTCTCGTGATCCTGA+AGG | 0.570844 | 2_3:-37701623 | Msa0290440:CDS |
| AGTGCCGAGTGGTTAAAAGC+TGG | 0.572904 | 2_3:-37701668 | Msa0290440:CDS |
| TTCATACCTTCATTTCCACC+CGG | 0.576364 | 2_3:+37697510 | None:intergenic |
| ATGCGCTTTGTACATGGAGA+TGG | 0.587432 | 2_3:-37695932 | Msa0290440:CDS |
| CATGCTAGCAACCTCTCCAA+TGG | 0.590466 | 2_3:+37695952 | None:intergenic |
| ACCACACCATTGCTTTCTGG+AGG | 0.594754 | 2_3:+37699454 | None:intergenic |
| AAAGACAATGGCAATGTGAG+AGG | 0.596169 | 2_3:+37702483 | None:intergenic |
| TTTGACACAGACTGAAATGA+GGG | 0.598026 | 2_3:-37701591 | Msa0290440:intron |
| GGGCATGATTTGTGCTATTG+CGG | 0.598516 | 2_3:-37700965 | Msa0290440:CDS |
| CACATTGCCTCTAAATCCTG+AGG | 0.606507 | 2_3:+37701707 | None:intergenic |
| GAAGCGACCATATCTTTCCC+GGG | 0.606724 | 2_3:-37697528 | Msa0290440:CDS |
| AGTACTTTGTGCCATTGGAG+AGG | 0.611024 | 2_3:-37695963 | Msa0290440:CDS |
| GAGAAGACATGGAAGCTATG+TGG | 0.614861 | 2_3:-37697628 | Msa0290440:CDS |
| GTGAATACCTCCAAAGACAA+TGG | 0.616645 | 2_3:+37702471 | None:intergenic |
| AAGACAATGGCAATGTGAGA+GGG | 0.617950 | 2_3:+37702484 | None:intergenic |
| CTCAGGATTTAGAGGCAATG+TGG | 0.620463 | 2_3:-37701706 | Msa0290440:CDS |
| ATCATTCATATGCTGCAGAA+GGG | 0.621805 | 2_3:-37700376 | Msa0290440:CDS |
| TTAAAAGCTGGAGAGGAAAG+AGG | 0.625391 | 2_3:-37701656 | Msa0290440:CDS |
| TTGTTTGTAGTTCAGGATGG+CGG | 0.628719 | 2_3:-37701762 | Msa0290440:intron |
| ATTGTAAGGGCATATAAAGG+TGG | 0.632413 | 2_3:-37700133 | Msa0290440:CDS |
| TCCTCCAGAAAGCAATGGTG+TGG | 0.633053 | 2_3:-37699455 | Msa0290440:CDS |
| CGAGTGGTTAAAAGCTGGAG+AGG | 0.633106 | 2_3:-37701663 | Msa0290440:CDS |
| TCAACAAGGAACCACCTGGA+AGG | 0.635684 | 2_3:+37700040 | None:intergenic |
| TCATACCTTCATTTCCACCC+GGG | 0.657505 | 2_3:+37697511 | None:intergenic |
| GATAGTCCTCCAGAAAGCAA+TGG | 0.662903 | 2_3:-37699460 | Msa0290440:CDS |
| ATTAAATCCAAAGAAACACA+TGG | 0.678264 | 2_3:-37697578 | Msa0290440:CDS |
| GACCAAGACCTGGAATAATG+GGG | 0.696661 | 2_3:-37695910 | Msa0290440:CDS |
| GCGACCATATCTTTCCCGGG+TGG | 0.707607 | 2_3:-37697525 | Msa0290440:CDS |
| TACCTGAAGTGAGTGCCGAG+TGG | 0.779736 | 2_3:-37701679 | Msa0290440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAAGATTTTATAATTTC+AGG | - | chr2_3:37697865-37697884 | Msa0290440:intron | 10.0% |
| !!! | ATTAAGATTTTATAATTTCA+GGG | - | chr2_3:37697866-37697885 | Msa0290440:intron | 10.0% |
| !! | AGATCAATATTTATTTAAAT+TGG | + | chr2_3:37700609-37700628 | None:intergenic | 10.0% |
| !! | CTATTTAATACAAATTCATA+AGG | - | chr2_3:37695986-37696005 | Msa0290440:intron | 15.0% |
| !!! | AGCTATTTTATTTTGAATTT+TGG | - | chr2_3:37696041-37696060 | Msa0290440:intron | 15.0% |
| !!! | GCTATTTTATTTTGAATTTT+GGG | - | chr2_3:37696042-37696061 | Msa0290440:intron | 15.0% |
| !!! | CTATTTTATTTTGAATTTTG+GGG | - | chr2_3:37696043-37696062 | Msa0290440:intron | 15.0% |
| !! | TAAACACGATAAATTTATTA+GGG | + | chr2_3:37696088-37696107 | None:intergenic | 15.0% |
| !! | TTAAACACGATAAATTTATT+AGG | + | chr2_3:37696089-37696108 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTGGAAACT+TGG | - | chr2_3:37696305-37696324 | Msa0290440:intron | 15.0% |
| !! | CAACAAAAATTCATAAATAA+AGG | + | chr2_3:37696564-37696583 | None:intergenic | 15.0% |
| !!! | TTAAGAATTTTGAAACTTAA+AGG | + | chr2_3:37696987-37697006 | None:intergenic | 15.0% |
| !! | AATGATTAATAACATTAAGT+TGG | + | chr2_3:37697812-37697831 | None:intergenic | 15.0% |
| !!! | TTTGAAATTTTGATAATATG+AGG | - | chr2_3:37697894-37697913 | Msa0290440:intron | 15.0% |
| !!! | TTGAAATTTTGATAATATGA+GGG | - | chr2_3:37697895-37697914 | Msa0290440:intron | 15.0% |
| !! | ATTATTTCATTGTTATGTTA+TGG | - | chr2_3:37697980-37697999 | Msa0290440:intron | 15.0% |
| !! | AAGAAATAACATGTTTAAAT+GGG | + | chr2_3:37699064-37699083 | None:intergenic | 15.0% |
| !! | TAAGAAATAACATGTTTAAA+TGG | + | chr2_3:37699065-37699084 | None:intergenic | 15.0% |
| !! | AAACAAAAGAACAATTAATT+TGG | + | chr2_3:37699906-37699925 | None:intergenic | 15.0% |
| !! | TATAAGTTTGTACTAAATTA+AGG | - | chr2_3:37700044-37700063 | Msa0290440:intron | 15.0% |
| !!! | TTAAAACTTTTAACAAACAA+AGG | + | chr2_3:37700146-37700165 | None:intergenic | 15.0% |
| !!! | TTGTTTGTTAAAAGTTTTAA+TGG | - | chr2_3:37700146-37700165 | Msa0290440:CDS | 15.0% |
| !! | ATATGAAATAACCAAAATTA+AGG | + | chr2_3:37701302-37701321 | None:intergenic | 15.0% |
| !!! | TTTTACACATTAAAAACAAA+AGG | + | chr2_3:37702383-37702402 | None:intergenic | 15.0% |
| !!! | TAAAATTTTGCTACGTTTTA+GGG | + | chr2_3:37696251-37696270 | None:intergenic | 20.0% |
| !!! | ATAAAATTTTGCTACGTTTT+AGG | + | chr2_3:37696252-37696271 | None:intergenic | 20.0% |
| !!! | AAAACGTAGCAAAATTTTAT+AGG | - | chr2_3:37696252-37696271 | Msa0290440:intron | 20.0% |
| !! | TTTGTAAGTGTATTAAAAAG+TGG | - | chr2_3:37697096-37697115 | Msa0290440:intron | 20.0% |
| !! | AAGTGGTTTGAATTAATAAT+AGG | - | chr2_3:37697113-37697132 | Msa0290440:intron | 20.0% |
| !!! | AATATCCCAAAATTATTTCT+GGG | - | chr2_3:37697700-37697719 | Msa0290440:intron | 20.0% |
| !! | TTACATGTAAATATCCAATT+TGG | + | chr2_3:37697954-37697973 | None:intergenic | 20.0% |
| !!! | ATACTGAGTAATGAATTTTT+TGG | - | chr2_3:37698842-37698861 | Msa0290440:intron | 20.0% |
| !!! | TACTGAGTAATGAATTTTTT+GGG | - | chr2_3:37698843-37698862 | Msa0290440:intron | 20.0% |
| !! | CTTTCATGACAATTTATATA+AGG | - | chr2_3:37699270-37699289 | Msa0290440:intron | 20.0% |
| !! | TTCTGATTAATATATCATTG+TGG | + | chr2_3:37699628-37699647 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTAGTATTCACCT+TGG | + | chr2_3:37699779-37699798 | None:intergenic | 20.0% |
| !!! | CATTTTGTAGTTTATCAAAT+TGG | - | chr2_3:37699985-37700004 | Msa0290440:intron | 20.0% |
| !!! | TTTATCAAATTGGTTTGTAT+CGG | - | chr2_3:37699995-37700014 | Msa0290440:intron | 20.0% |
| !!! | TGTTTCATGATTTTACATTA+TGG | + | chr2_3:37700340-37700359 | None:intergenic | 20.0% |
| !! | TATGTAGCAAGAAAATTATT+TGG | + | chr2_3:37700671-37700690 | None:intergenic | 20.0% |
| !! | TGAGAAAAATAATAAGAGTT+TGG | - | chr2_3:37701041-37701060 | Msa0290440:intron | 20.0% |
| !! | AGTTAGCATCAAATTATTAT+TGG | + | chr2_3:37701073-37701092 | None:intergenic | 20.0% |
| !! | CTTGATTTCTCTATTTATTT+AGG | + | chr2_3:37701150-37701169 | None:intergenic | 20.0% |
| !!! | ACAGAAGAATGAATAATTTT+AGG | + | chr2_3:37701227-37701246 | None:intergenic | 20.0% |
| !! | AAAATTATTCATTCTTCTGT+TGG | - | chr2_3:37701227-37701246 | Msa0290440:intron | 20.0% |
| !! | AAATTATTCATTCTTCTGTT+GGG | - | chr2_3:37701228-37701247 | Msa0290440:intron | 20.0% |
| !!! | GTTATAATTCTTTGACATTT+TGG | - | chr2_3:37701367-37701386 | Msa0290440:intron | 20.0% |
| !! | AAAGATAAATATGCTTAGAA+TGG | - | chr2_3:37701460-37701479 | Msa0290440:intron | 20.0% |
| !!! | TGTAGAGATTTTATAGTATT+AGG | - | chr2_3:37701963-37701982 | Msa0290440:intron | 20.0% |
| !!! | ATATTAATCTTTTTTGTTGC+AGG | - | chr2_3:37702036-37702055 | Msa0290440:intron | 20.0% |
| !!! | TACTTACAGATTTAATCTTT+TGG | + | chr2_3:37702099-37702118 | None:intergenic | 20.0% |
| !!! | TTCTTCTTTTGAATATTGTT+TGG | - | chr2_3:37702421-37702440 | Msa0290440:intron | 20.0% |
| !!! | TTATTTTGAATTTTGGGGTA+CGG | - | chr2_3:37696048-37696067 | Msa0290440:intron | 25.0% |
| !! | GTAGCAAAATTTTATAGGTT+AGG | - | chr2_3:37696257-37696276 | Msa0290440:intron | 25.0% |
| ! | TCGAAAAATCTAATAATGCA+TGG | - | chr2_3:37696335-37696354 | Msa0290440:CDS | 25.0% |
| ! | CGAAAAATCTAATAATGCAT+GGG | - | chr2_3:37696336-37696355 | Msa0290440:CDS | 25.0% |
| !!! | GTAAATTTTGTTTGTAGTTC+AGG | - | chr2_3:37696647-37696666 | Msa0290440:intron | 25.0% |
| ! | ATTTACATCATCCTATCTTT+AGG | - | chr2_3:37696850-37696869 | Msa0290440:intron | 25.0% |
| !! | TTGTAAGAAACACAAGTTTT+AGG | - | chr2_3:37696913-37696932 | Msa0290440:intron | 25.0% |
| !! | GATTTTCGTAAAAGAAGTTT+CGG | - | chr2_3:37696935-37696954 | Msa0290440:intron | 25.0% |
| ! | TACACTTACAAATACCTAAA+TGG | + | chr2_3:37697088-37697107 | None:intergenic | 25.0% |
| !!! | AATCCTGTATGTCTTTTTTT+TGG | - | chr2_3:37697281-37697300 | Msa0290440:intron | 25.0% |
| !!! | ATCCTGTATGTCTTTTTTTT+GGG | - | chr2_3:37697282-37697301 | Msa0290440:intron | 25.0% |
| ! | ATAAACTGTGAATAGTTGAA+AGG | + | chr2_3:37697362-37697381 | None:intergenic | 25.0% |
| ! | TTAATTGTTAAGAATTGTCG+TGG | - | chr2_3:37697409-37697428 | Msa0290440:intron | 25.0% |
| !!! | GTTATTTTTTCCTTGTTGTA+GGG | - | chr2_3:37697431-37697450 | Msa0290440:intron | 25.0% |
| !!! | CAACTACTTGTTATAAACTA+TGG | - | chr2_3:37697491-37697510 | Msa0290440:intron | 25.0% |
| !!! | CTCGATTTTTTTCTGTTATT+TGG | + | chr2_3:37697620-37697639 | None:intergenic | 25.0% |
| ! | TATCCAAATTTGTCCTTAAA+TGG | - | chr2_3:37697644-37697663 | Msa0290440:CDS | 25.0% |
| ! | TTACCATTTAAGGACAAATT+TGG | + | chr2_3:37697650-37697669 | None:intergenic | 25.0% |
| !!! | TGAAATGGTTTTACCATTTA+AGG | + | chr2_3:37697660-37697679 | None:intergenic | 25.0% |
| ! | CAATATCCCAAAATTATTTC+TGG | - | chr2_3:37697699-37697718 | Msa0290440:intron | 25.0% |
| !! | TTTGATAATATGAGGGATTT+AGG | - | chr2_3:37697902-37697921 | Msa0290440:intron | 25.0% |
| ! | AAGTGAAGAGTTTATTGTAA+GGG | - | chr2_3:37698270-37698289 | Msa0290440:intron | 25.0% |
| !! | TTTATTGTAAGGGCATATAA+AGG | - | chr2_3:37698280-37698299 | Msa0290440:intron | 25.0% |
| ! | ATGAACTACAATTATCAACA+AGG | + | chr2_3:37698393-37698412 | None:intergenic | 25.0% |
| !!! | GAATTTTTTGGGTTATAAGT+TGG | - | chr2_3:37698854-37698873 | Msa0290440:intron | 25.0% |
| ! | ATGTTTAAATGGGATTATCA+GGG | + | chr2_3:37699054-37699073 | None:intergenic | 25.0% |
| ! | TAGATACGATATTGAGAATA+AGG | - | chr2_3:37699213-37699232 | Msa0290440:intron | 25.0% |
| !!! | TGTCTCATGTTTTAGTTATT+GGG | - | chr2_3:37699406-37699425 | Msa0290440:CDS | 25.0% |
| !!! | ATTTTTAGCTTACTAATCCA+AGG | + | chr2_3:37699823-37699842 | None:intergenic | 25.0% |
| !!! | TGGATTAGTAAGCTAAAAAT+TGG | - | chr2_3:37699823-37699842 | Msa0290440:intron | 25.0% |
| !!! | TTATCAAATTGGTTTGTATC+GGG | - | chr2_3:37699996-37700015 | Msa0290440:intron | 25.0% |
| ! | CTAAATTAAGGAATTACAGA+TGG | - | chr2_3:37700056-37700075 | Msa0290440:CDS | 25.0% |
| !!! | ACAACATTGACTCTAAAAAA+GGG | + | chr2_3:37700175-37700194 | None:intergenic | 25.0% |
| !!! | TACAACATTGACTCTAAAAA+AGG | + | chr2_3:37700176-37700195 | None:intergenic | 25.0% |
| ! | AAAAAGTGATAAAACTACGA+AGG | - | chr2_3:37700363-37700382 | Msa0290440:CDS | 25.0% |
| ! | TAAAACTACGAAGGAAAAAT+AGG | - | chr2_3:37700372-37700391 | Msa0290440:CDS | 25.0% |
| !!! | AACATAACAAAAGTTTTGTC+AGG | + | chr2_3:37700719-37700738 | None:intergenic | 25.0% |
| !! | TGGATTTAATCCATACTTTT+CGG | + | chr2_3:37700828-37700847 | None:intergenic | 25.0% |
| ! | ATTAAATCCAAAGAAACACA+TGG | - | chr2_3:37700838-37700857 | Msa0290440:intron | 25.0% |
| !! | TTCTCTTTTTGTTGAAGTTA+TGG | - | chr2_3:37701002-37701021 | Msa0290440:intron | 25.0% |
| !! | TCTCTTTTTGTTGAAGTTAT+GGG | - | chr2_3:37701003-37701022 | Msa0290440:intron | 25.0% |
| ! | TCTTGTGTCTTTATATATAG+GGG | + | chr2_3:37701119-37701138 | None:intergenic | 25.0% |
| ! | GTCTTGTGTCTTTATATATA+GGG | + | chr2_3:37701120-37701139 | None:intergenic | 25.0% |
| !! | AGTCTTGTGTCTTTATATAT+AGG | + | chr2_3:37701121-37701140 | None:intergenic | 25.0% |
| ! | AATTATTCATTCTTCTGTTG+GGG | - | chr2_3:37701229-37701248 | Msa0290440:intron | 25.0% |
| ! | GAAATAACCAAAATTAAGGA+AGG | + | chr2_3:37701298-37701317 | None:intergenic | 25.0% |
| !! | GAAGTTAAAAAGTTCTGATT+TGG | - | chr2_3:37701389-37701408 | Msa0290440:intron | 25.0% |
| ! | TAAATAAAGTCATCTGCTAT+CGG | - | chr2_3:37701644-37701663 | Msa0290440:CDS | 25.0% |
| !!! | AGTTGATAGTCATTTAGTAT+AGG | - | chr2_3:37701784-37701803 | Msa0290440:intron | 25.0% |
| ! | AATTCAAATGTATGCAAACT+TGG | - | chr2_3:37701826-37701845 | Msa0290440:intron | 25.0% |
| ! | ATTCAAATGTATGCAAACTT+GGG | - | chr2_3:37701827-37701846 | Msa0290440:intron | 25.0% |
| ! | TATAAAATCTCTACAATAGC+GGG | + | chr2_3:37701958-37701977 | None:intergenic | 25.0% |
| ! | CTATAAAATCTCTACAATAG+CGG | + | chr2_3:37701959-37701978 | None:intergenic | 25.0% |
| !! | GCGTAATATTTTCCAATTTA+AGG | + | chr2_3:37702146-37702165 | None:intergenic | 25.0% |
| !!! | ACTTTTTCAATATGTGTTGT+AGG | + | chr2_3:37702188-37702207 | None:intergenic | 25.0% |
| ! | TATATTGTTCAGTACCAAAA+GGG | + | chr2_3:37702217-37702236 | None:intergenic | 25.0% |
| ! | ATATATTGTTCAGTACCAAA+AGG | + | chr2_3:37702218-37702237 | None:intergenic | 25.0% |
| ! | TTTCTTGTGATACATTCTAT+AGG | + | chr2_3:37702246-37702265 | None:intergenic | 25.0% |
| ! | TTCAAAAGAAGAAAAACACA+AGG | + | chr2_3:37702414-37702433 | None:intergenic | 25.0% |
| ! | TTTTTACTCTTTGACGAAGA+AGG | - | chr2_3:37696204-37696223 | Msa0290440:intron | 30.0% |
| !! | GCATTATTAGATTTTTCGAC+TGG | + | chr2_3:37696334-37696353 | None:intergenic | 30.0% |
| CATTTACAATTAACCCACAA+GGG | + | chr2_3:37696502-37696521 | None:intergenic | 30.0% | |
| ACATTTACAATTAACCCACA+AGG | + | chr2_3:37696503-37696522 | None:intergenic | 30.0% | |
| !! | ATTTTGTTTGTAGTTCAGGA+TGG | - | chr2_3:37696651-37696670 | Msa0290440:intron | 30.0% |
| ATTTCAGTCTGTGTCAAATA+AGG | + | chr2_3:37696823-37696842 | None:intergenic | 30.0% | |
| !! | ATCATCCTATCTTTAGGATT+TGG | - | chr2_3:37696856-37696875 | Msa0290440:intron | 30.0% |
| !! | ATTTCGAGTTTCTTGTTTGT+TGG | - | chr2_3:37696883-37696902 | Msa0290440:intron | 30.0% |
| AATGGACATTCAAATGGTAA+AGG | + | chr2_3:37697070-37697089 | None:intergenic | 30.0% | |
| TACCATTTGAATGTCCATTT+AGG | - | chr2_3:37697071-37697090 | Msa0290440:intron | 30.0% | |
| TACCTAAATGGACATTCAAA+TGG | + | chr2_3:37697076-37697095 | None:intergenic | 30.0% | |
| ! | TCGCATAATTGTGTATTTTC+AGG | - | chr2_3:37697214-37697233 | Msa0290440:intron | 30.0% |
| TTCCCAAAAAAAAGACATAC+AGG | + | chr2_3:37697287-37697306 | None:intergenic | 30.0% | |
| !!! | GGTTATTTTTTCCTTGTTGT+AGG | - | chr2_3:37697430-37697449 | Msa0290440:intron | 30.0% |
| AAATCTAAAGAGCCTAATGT+CGG | - | chr2_3:37697518-37697537 | Msa0290440:CDS | 30.0% | |
| TTCTACCAAAAACTGTTGAA+TGG | - | chr2_3:37697552-37697571 | Msa0290440:CDS | 30.0% | |
| ! | ATCAACCATTCAACAGTTTT+TGG | + | chr2_3:37697560-37697579 | None:intergenic | 30.0% |
| ! | AAACTGTTGAATGGTTGATA+AGG | - | chr2_3:37697561-37697580 | Msa0290440:CDS | 30.0% |
| ! | ACAGTCCCAGAAATAATTTT+GGG | + | chr2_3:37697708-37697727 | None:intergenic | 30.0% |
| ! | TACAGTCCCAGAAATAATTT+TGG | + | chr2_3:37697709-37697728 | None:intergenic | 30.0% |
| AAACCTAGTGAATAATGTCA+GGG | + | chr2_3:37697769-37697788 | None:intergenic | 30.0% | |
| AATTTGGCCATTGAAATTGT+AGG | + | chr2_3:37697938-37697957 | None:intergenic | 30.0% | |
| TACAATTTCAATGGCCAAAT+TGG | - | chr2_3:37697937-37697956 | Msa0290440:intron | 30.0% | |
| CATTTATGAAAGGCTTGAAT+AGG | + | chr2_3:37698077-37698096 | None:intergenic | 30.0% | |
| GCGAAATACACATTTATGAA+AGG | + | chr2_3:37698087-37698106 | None:intergenic | 30.0% | |
| TTCCATGTGATTTATGTATG+CGG | - | chr2_3:37698160-37698179 | Msa0290440:intron | 30.0% | |
| TAAATGTTTCAGAACACTCA+TGG | + | chr2_3:37698219-37698238 | None:intergenic | 30.0% | |
| GAAGTGAAGAGTTTATTGTA+AGG | - | chr2_3:37698269-37698288 | Msa0290440:intron | 30.0% | |
| ACAATATTAGCAAAGTACAC+AGG | + | chr2_3:37698463-37698482 | None:intergenic | 30.0% | |
| TATATATCTAGTGTCTCTCT+TGG | - | chr2_3:37698748-37698767 | Msa0290440:intron | 30.0% | |
| !!! | TTTTTGGGTTATAAGTTGGA+AGG | - | chr2_3:37698858-37698877 | Msa0290440:intron | 30.0% |
| TGTTTAAATGGGATTATCAG+GGG | + | chr2_3:37699053-37699072 | None:intergenic | 30.0% | |
| CATGTTTAAATGGGATTATC+AGG | + | chr2_3:37699055-37699074 | None:intergenic | 30.0% | |
| !!! | GTGTCTCATGTTTTAGTTAT+TGG | - | chr2_3:37699405-37699424 | Msa0290440:CDS | 30.0% |
| !! | ACCTTACAATCGTTTTTGTA+AGG | - | chr2_3:37699497-37699516 | Msa0290440:intron | 30.0% |
| TCCTTACAAAAACGATTGTA+AGG | + | chr2_3:37699501-37699520 | None:intergenic | 30.0% | |
| GTGAAACTAATGTTGACATT+GGG | + | chr2_3:37699533-37699552 | None:intergenic | 30.0% | |
| TGTGAAATAATAGCAGTAGA+AGG | + | chr2_3:37699555-37699574 | None:intergenic | 30.0% | |
| !!! | ACCTATTTTTTTAACCATCG+AGG | - | chr2_3:37699581-37699600 | Msa0290440:intron | 30.0% |
| CGCTTTGACAAAAACTATAA+CGG | + | chr2_3:37699850-37699869 | None:intergenic | 30.0% | |
| !! | TTTTCTTGTCTGCTTTTGAA+AGG | - | chr2_3:37700094-37700113 | Msa0290440:CDS | 30.0% |
| !! | TTTCTTGTCTGCTTTTGAAA+GGG | - | chr2_3:37700095-37700114 | Msa0290440:CDS | 30.0% |
| AAAGATACAGAACTATGGAA+AGG | + | chr2_3:37700281-37700300 | None:intergenic | 30.0% | |
| CATTATGGCAATGAAATCTA+GGG | + | chr2_3:37700325-37700344 | None:intergenic | 30.0% | |
| ACATTATGGCAATGAAATCT+AGG | + | chr2_3:37700326-37700345 | None:intergenic | 30.0% | |
| ! | AGGCAATTTTCTTATCTTTG+TGG | - | chr2_3:37700392-37700411 | Msa0290440:intron | 30.0% |
| AGTTGACGTAGTTAAATTGA+TGG | - | chr2_3:37700500-37700519 | Msa0290440:intron | 30.0% | |
| AATATAGCTATGCAAGTACA+CGG | + | chr2_3:37700695-37700714 | None:intergenic | 30.0% | |
| ATGCAAAAGATGACACATAT+TGG | - | chr2_3:37700749-37700768 | Msa0290440:intron | 30.0% | |
| TGCAAAAGATGACACATATT+GGG | - | chr2_3:37700750-37700769 | Msa0290440:intron | 30.0% | |
| ! | TATGATTCCTTGATGACATT+TGG | - | chr2_3:37701197-37701216 | Msa0290440:intron | 30.0% |
| ATTATTCATTCTTCTGTTGG+GGG | - | chr2_3:37701230-37701249 | Msa0290440:intron | 30.0% | |
| ! | ATGAAGCAAATTCCTTGTTT+GGG | - | chr2_3:37701556-37701575 | Msa0290440:intron | 30.0% |
| !! | TTAAGTTGTTTTCCCAAACA+AGG | + | chr2_3:37701571-37701590 | None:intergenic | 30.0% |
| ATCGGAAAATAACTTATGAC+AGG | + | chr2_3:37701740-37701759 | None:intergenic | 30.0% | |
| AACTACTAATGAGACTGTTT+AGG | + | chr2_3:37701768-37701787 | None:intergenic | 30.0% | |
| ! | AGGACATGTACATGATTTTT+AGG | + | chr2_3:37701863-37701882 | None:intergenic | 30.0% |
| GTATTTAAAAGAGGTTGACA+AGG | + | chr2_3:37701883-37701902 | None:intergenic | 30.0% | |
| !! | CCTTAGCTTGTATTTAAAAG+AGG | + | chr2_3:37701892-37701911 | None:intergenic | 30.0% |
| ! | CCTCTTTTAAATACAAGCTA+AGG | - | chr2_3:37701889-37701908 | Msa0290440:intron | 30.0% |
| ATAAAATCTCTACAATAGCG+GGG | + | chr2_3:37701957-37701976 | None:intergenic | 30.0% | |
| ! | GAGATTTTATAGTATTAGGC+CGG | - | chr2_3:37701967-37701986 | Msa0290440:intron | 30.0% |
| GAACACTAAAAAAACAAAGC+CGG | + | chr2_3:37701989-37702008 | None:intergenic | 30.0% | |
| AATCTGTAAGTATACAGAAC+TGG | - | chr2_3:37702107-37702126 | Msa0290440:intron | 30.0% | |
| GGAGTTTGATTACCTTAAAT+TGG | - | chr2_3:37702131-37702150 | Msa0290440:intron | 30.0% | |
| TTTAGATTCATCGATGCTAA+TGG | - | chr2_3:37702284-37702303 | Msa0290440:intron | 30.0% | |
| TGAAAAGTTCCCACCAAAAA+GGG | + | chr2_3:37695890-37695909 | None:intergenic | 35.0% | |
| ATGAAAAGTTCCCACCAAAA+AGG | + | chr2_3:37695891-37695910 | None:intergenic | 35.0% | |
| GTAACGATTGAATGAAGCTT+AGG | - | chr2_3:37696140-37696159 | Msa0290440:intron | 35.0% | |
| ATTTGACACAGACTGAAATG+AGG | - | chr2_3:37696824-37696843 | Msa0290440:intron | 35.0% | |
| TTTGACACAGACTGAAATGA+GGG | - | chr2_3:37696825-37696844 | Msa0290440:intron | 35.0% | |
| TAGTGCCAAATCCTAAAGAT+AGG | + | chr2_3:37696864-37696883 | None:intergenic | 35.0% | |
| TCGTAAAAGAAGTTTCGGTA+TGG | - | chr2_3:37696940-37696959 | Msa0290440:intron | 35.0% | |
| ! | TAGCTGACATTGTTATTAGC+AGG | - | chr2_3:37697240-37697259 | Msa0290440:intron | 35.0% |
| AATCTAAAGAGCCTAATGTC+GGG | - | chr2_3:37697519-37697538 | Msa0290440:CDS | 35.0% | |
| AGGTACCTATTAGATGTTGA+TGG | - | chr2_3:37697581-37697600 | Msa0290440:CDS | 35.0% | |
| GTAAGCCATCAACATCTAAT+AGG | + | chr2_3:37697589-37697608 | None:intergenic | 35.0% | |
| AACCATTTCAACTTAGTCCT+CGG | - | chr2_3:37697670-37697689 | Msa0290440:CDS | 35.0% | |
| TATCCCTGACATTATTCACT+AGG | - | chr2_3:37697763-37697782 | Msa0290440:intron | 35.0% | |
| GAAACCTAGTGAATAATGTC+AGG | + | chr2_3:37697770-37697789 | None:intergenic | 35.0% | |
| !! | ACATTAAGTTGGTGATGTAG+AGG | + | chr2_3:37697801-37697820 | None:intergenic | 35.0% |
| GCTCTACAAATATCATCTGA+AGG | - | chr2_3:37697835-37697854 | Msa0290440:intron | 35.0% | |
| TTGAAATTGTAGGACCGTAT+CGG | + | chr2_3:37697928-37697947 | None:intergenic | 35.0% | |
| ATACGGTCCTACAATTTCAA+TGG | - | chr2_3:37697928-37697947 | Msa0290440:intron | 35.0% | |
| TATCATTCATATGCTGCAGA+AGG | - | chr2_3:37698039-37698058 | Msa0290440:intron | 35.0% | |
| ATCATTCATATGCTGCAGAA+GGG | - | chr2_3:37698040-37698059 | Msa0290440:intron | 35.0% | |
| TACCGCATACATAAATCACA+TGG | + | chr2_3:37698165-37698184 | None:intergenic | 35.0% | |
| ! | ATTGTAAGGGCATATAAAGG+TGG | - | chr2_3:37698283-37698302 | Msa0290440:intron | 35.0% |
| ACAAATCAACATTGCGCTAT+TGG | - | chr2_3:37698323-37698342 | Msa0290440:intron | 35.0% | |
| ! | TCAAAGAAAGTTTTCCTTCC+AGG | - | chr2_3:37698362-37698381 | Msa0290440:intron | 35.0% |
| TATAGTATGCATCCACTCTT+TGG | - | chr2_3:37698579-37698598 | Msa0290440:intron | 35.0% | |
| !! | AATTACCGATTCATCCATTG+AGG | - | chr2_3:37698656-37698675 | Msa0290440:intron | 35.0% |
| AATCTCGACAAGTAGTAATG+TGG | - | chr2_3:37698795-37698814 | Msa0290440:intron | 35.0% | |
| ATCTCGACAAGTAGTAATGT+GGG | - | chr2_3:37698796-37698815 | Msa0290440:intron | 35.0% | |
| ! | ATCAACAGATTTTCTGCACA+AGG | + | chr2_3:37698936-37698955 | None:intergenic | 35.0% |
| GTTTAAATGGGATTATCAGG+GGG | + | chr2_3:37699052-37699071 | None:intergenic | 35.0% | |
| !! | CTTGATGAGAGTTGATAAAG+AGG | - | chr2_3:37699463-37699482 | Msa0290440:CDS | 35.0% |
| ACAAAAACGATTGTAAGGTG+AGG | + | chr2_3:37699496-37699515 | None:intergenic | 35.0% | |
| ! | CGTTTTTGTAAGGATGAGTT+AGG | - | chr2_3:37699507-37699526 | Msa0290440:intron | 35.0% |
| GGTGAAACTAATGTTGACAT+TGG | + | chr2_3:37699534-37699553 | None:intergenic | 35.0% | |
| GCCTCGATGGTTAAAAAAAT+AGG | + | chr2_3:37699585-37699604 | None:intergenic | 35.0% | |
| !!! | ATTTTTTTAACCATCGAGGC+AGG | - | chr2_3:37699585-37699604 | Msa0290440:intron | 35.0% |
| TGTTGAAAAAAGTAGTGCCT+TGG | - | chr2_3:37699803-37699822 | Msa0290440:intron | 35.0% | |
| TAAGGAATTACAGATGGTGA+TGG | - | chr2_3:37700062-37700081 | Msa0290440:CDS | 35.0% | |
| GCGAAAAAGATACAGAACTA+TGG | + | chr2_3:37700286-37700305 | None:intergenic | 35.0% | |
| GCATTCAATTGTACAGATTG+TGG | - | chr2_3:37700461-37700480 | Msa0290440:intron | 35.0% | |
| GCTAAGACACAAAGTAAGAA+CGG | + | chr2_3:37700527-37700546 | None:intergenic | 35.0% | |
| ATATAGCTATGCAAGTACAC+GGG | + | chr2_3:37700694-37700713 | None:intergenic | 35.0% | |
| ATCCTGTAATCCGAAAAGTA+TGG | - | chr2_3:37700815-37700834 | Msa0290440:intron | 35.0% | |
| ! | ATCCATACTTTTCGGATTAC+AGG | + | chr2_3:37700820-37700839 | None:intergenic | 35.0% |
| ATCCAAAGAAACACATGGAA+AGG | - | chr2_3:37700843-37700862 | Msa0290440:intron | 35.0% | |
| ! | GTCGTTTCCTTCCTTAATTT+TGG | - | chr2_3:37701288-37701307 | Msa0290440:intron | 35.0% |
| TAGAGTGACATTTCAAAGAC+AGG | + | chr2_3:37701488-37701507 | None:intergenic | 35.0% | |
| AATGAAATTGTCCGTGTAAG+AGG | - | chr2_3:37701523-37701542 | Msa0290440:intron | 35.0% | |
| GATGAAGCAAATTCCTTGTT+TGG | - | chr2_3:37701555-37701574 | Msa0290440:intron | 35.0% | |
| TATGCAAACTTGGGCTATTT+AGG | - | chr2_3:37701836-37701855 | Msa0290440:intron | 35.0% | |
| !! | TTGACTTTTCCACTGCTTTT+TGG | - | chr2_3:37702530-37702549 | Msa0290440:CDS | 35.0% |
| AAGACAATGGCAATGTGAGA+GGG | + | chr2_3:37695935-37695954 | None:intergenic | 40.0% | |
| AAAGACAATGGCAATGTGAG+AGG | + | chr2_3:37695936-37695955 | None:intergenic | 40.0% | |
| TCTCACATTGCCATTGTCTT+TGG | - | chr2_3:37695935-37695954 | Msa0290440:CDS | 40.0% | |
| GTGAATACCTCCAAAGACAA+TGG | + | chr2_3:37695948-37695967 | None:intergenic | 40.0% | |
| ! | TTTGGGGTACGGATGAATTA+TGG | - | chr2_3:37696059-37696078 | Msa0290440:intron | 40.0% |
| TTGTTTGTAGTTCAGGATGG+CGG | - | chr2_3:37696654-37696673 | Msa0290440:intron | 40.0% | |
| ATCATCCCAGTAGCTGAAAT+TGG | + | chr2_3:37696680-37696699 | None:intergenic | 40.0% | |
| TGTTGATCCTCAGGATTTAG+AGG | - | chr2_3:37696702-37696721 | Msa0290440:intron | 40.0% | |
| TTAAAAGCTGGAGAGGAAAG+AGG | - | chr2_3:37696760-37696779 | Msa0290440:intron | 40.0% | |
| ACAAATCATGCCCTACAACA+AGG | + | chr2_3:37697444-37697463 | None:intergenic | 40.0% | |
| !! | TTGGGATATTGATAATGCCG+AGG | + | chr2_3:37697690-37697709 | None:intergenic | 40.0% |
| TGTTATGTTATGGTCCACCA+AGG | - | chr2_3:37697990-37698009 | Msa0290440:intron | 40.0% | |
| ACTGTAAGCTGCATTAACCT+TGG | + | chr2_3:37698010-37698029 | None:intergenic | 40.0% | |
| AATGCAGCTTACAGTGCATT+AGG | - | chr2_3:37698015-37698034 | Msa0290440:intron | 40.0% | |
| ! | GTGTGACACCCATTTAAGAT+AGG | + | chr2_3:37698115-37698134 | None:intergenic | 40.0% |
| AGAACACTCATGGTAACTAC+TGG | + | chr2_3:37698209-37698228 | None:intergenic | 40.0% | |
| ATATAAAGGTGGTGCGAGAA+AGG | - | chr2_3:37698294-37698313 | Msa0290440:intron | 40.0% | |
| ! | AAGAAAGTTTTCCTTCCAGG+TGG | - | chr2_3:37698365-37698384 | Msa0290440:intron | 40.0% |
| ATTATCAACAAGGAACCACC+TGG | + | chr2_3:37698383-37698402 | None:intergenic | 40.0% | |
| GTACTGTCTGTGTATAGTGT+TGG | - | chr2_3:37698535-37698554 | Msa0290440:intron | 40.0% | |
| AGTGGATGCATACTATAGCA+AGG | + | chr2_3:37698576-37698595 | None:intergenic | 40.0% | |
| AGAGAAAAGAAGCCAAAGAG+TGG | + | chr2_3:37698594-37698613 | None:intergenic | 40.0% | |
| ATGCACCTCAATGGATGAAT+CGG | + | chr2_3:37698664-37698683 | None:intergenic | 40.0% | |
| GTTCCTGTTCATTCTCATAC+TGG | - | chr2_3:37698983-37699002 | Msa0290440:intron | 40.0% | |
| GATCCAGTATGAGAATGAAC+AGG | + | chr2_3:37698989-37699008 | None:intergenic | 40.0% | |
| ! | TCATACTGGATCTCCTTTTC+CGG | - | chr2_3:37698997-37699016 | Msa0290440:intron | 40.0% |
| TTTGAATGTTCTGCCGGAAA+AGG | + | chr2_3:37699013-37699032 | None:intergenic | 40.0% | |
| TTTCCGGCAGAACATTCAAA+AGG | - | chr2_3:37699013-37699032 | Msa0290440:intron | 40.0% | |
| ! | TGACCTTTTGAATGTTCTGC+CGG | + | chr2_3:37699019-37699038 | None:intergenic | 40.0% |
| CCAAATTCCATTCTAGACAG+TGG | + | chr2_3:37699112-37699131 | None:intergenic | 40.0% | |
| ! | CCACTGTCTAGAATGGAATT+TGG | - | chr2_3:37699109-37699128 | Msa0290440:intron | 40.0% |
| !! | GATGAGAGTTGATAAAGAGG+AGG | - | chr2_3:37699466-37699485 | Msa0290440:CDS | 40.0% |
| !! | CACTAGTCTTAGCAGAGAAA+AGG | + | chr2_3:37699676-37699695 | None:intergenic | 40.0% |
| GGTACTATGAATGGGACAAT+TGG | + | chr2_3:37699713-37699732 | None:intergenic | 40.0% | |
| ACCACTCAGGTACTATGAAT+GGG | + | chr2_3:37699721-37699740 | None:intergenic | 40.0% | |
| TACCACTCAGGTACTATGAA+TGG | + | chr2_3:37699722-37699741 | None:intergenic | 40.0% | |
| TTTCCAAGTCTTTACCACTC+AGG | + | chr2_3:37699734-37699753 | None:intergenic | 40.0% | |
| GTGGTAAAGACTTGGAAATC+AGG | - | chr2_3:37699736-37699755 | Msa0290440:intron | 40.0% | |
| ATCAGGTAGTGTCCAACTTA+AGG | - | chr2_3:37699753-37699772 | Msa0290440:intron | 40.0% | |
| !! | TATTCACCTTGGCCTTAAGT+TGG | + | chr2_3:37699768-37699787 | None:intergenic | 40.0% |
| TCAATGTTGCAGGAAACAGT+CGG | + | chr2_3:37699949-37699968 | None:intergenic | 40.0% | |
| CTGAACAACATCAATGTTGC+AGG | + | chr2_3:37699959-37699978 | None:intergenic | 40.0% | |
| CACCTTTCCATGTGTTTCTT+TGG | + | chr2_3:37700848-37700867 | None:intergenic | 40.0% | |
| TTCATACCTTCATTTCCACC+CGG | + | chr2_3:37700909-37700928 | None:intergenic | 40.0% | |
| ! | TCCTTGTTGTACCTCTTACA+CGG | + | chr2_3:37701537-37701556 | None:intergenic | 40.0% |
| CTGTAAGTATACAGAACTGG+AGG | - | chr2_3:37702110-37702129 | Msa0290440:intron | 40.0% | |
| ! | GAAAAAGTCGAGAACCCTTT+TGG | - | chr2_3:37702200-37702219 | Msa0290440:intron | 40.0% |
| AAGTCAATCCCCATTATTCC+AGG | + | chr2_3:37702517-37702536 | None:intergenic | 40.0% | |
| CACATTGCCATTGTCTTTGG+AGG | - | chr2_3:37695938-37695957 | Msa0290440:CDS | 45.0% | |
| ACCAATTCACTGTGCACTAG+TGG | - | chr2_3:37696359-37696378 | Msa0290440:CDS | 45.0% | |
| CCAATTCACTGTGCACTAGT+GGG | - | chr2_3:37696360-37696379 | Msa0290440:CDS | 45.0% | |
| CAATTCACTGTGCACTAGTG+GGG | - | chr2_3:37696361-37696380 | Msa0290440:CDS | 45.0% | |
| ATGCCAACAATTCCTGTGTC+GGG | + | chr2_3:37696424-37696443 | None:intergenic | 45.0% | |
| GATGCCAACAATTCCTGTGT+CGG | + | chr2_3:37696425-37696444 | None:intergenic | 45.0% | |
| ! | TTGGCATCTGAGACCTAAAG+AGG | - | chr2_3:37696437-37696456 | Msa0290440:intron | 45.0% |
| TAGCCTGGTGGTATAGACAT+CGG | + | chr2_3:37696478-37696497 | None:intergenic | 45.0% | |
| ! | GGATGATTGTGTTGATCCTC+AGG | - | chr2_3:37696693-37696712 | Msa0290440:intron | 45.0% |
| CACATTGCCTCTAAATCCTG+AGG | + | chr2_3:37696712-37696731 | None:intergenic | 45.0% | |
| CTCAGGATTTAGAGGCAATG+TGG | - | chr2_3:37696710-37696729 | Msa0290440:intron | 45.0% | |
| ! | CTCTCCAGCTTTTAACCACT+CGG | + | chr2_3:37696755-37696774 | None:intergenic | 45.0% |
| CAGTCTGTGTCAAATAAGGC+TGG | + | chr2_3:37696819-37696838 | None:intergenic | 45.0% | |
| ! | GGGCATGATTTGTGCTATTG+CGG | - | chr2_3:37697451-37697470 | Msa0290440:intron | 45.0% |
| AGTTGCATAAGCCCGACATT+AGG | + | chr2_3:37697533-37697552 | None:intergenic | 45.0% | |
| ! | TGCCGAGGACTAAGTTGAAA+TGG | + | chr2_3:37697675-37697694 | None:intergenic | 45.0% |
| ATGAGGGATTTAGGCCGATA+CGG | - | chr2_3:37697911-37697930 | Msa0290440:intron | 45.0% | |
| GTAAGCTGCATTAACCTTGG+TGG | + | chr2_3:37698007-37698026 | None:intergenic | 45.0% | |
| TCGCTGCTGCCTATCTTAAA+TGG | - | chr2_3:37698103-37698122 | Msa0290440:intron | 45.0% | |
| CGCTGCTGCCTATCTTAAAT+GGG | - | chr2_3:37698104-37698123 | Msa0290440:intron | 45.0% | |
| TCGACAAGTAGTAATGTGGG+AGG | - | chr2_3:37698799-37698818 | Msa0290440:intron | 45.0% | |
| GTTGGAAGGAAAGCTGAAGT+TGG | - | chr2_3:37698872-37698891 | Msa0290440:intron | 45.0% | |
| GATAGTCCTCCAGAAAGCAA+TGG | - | chr2_3:37698956-37698975 | Msa0290440:intron | 45.0% | |
| CAGAACACCACTGTCTAGAA+TGG | - | chr2_3:37699102-37699121 | Msa0290440:intron | 45.0% | |
| TCCCTAAAACACTCCACCTA+TGG | - | chr2_3:37699143-37699162 | Msa0290440:intron | 45.0% | |
| !! | GCCATAGGTGGAGTGTTTTA+GGG | + | chr2_3:37699147-37699166 | None:intergenic | 45.0% |
| !! | TGCCATAGGTGGAGTGTTTT+AGG | + | chr2_3:37699148-37699167 | None:intergenic | 45.0% |
| AATCCAAATGCGTGATCCAG+TGG | + | chr2_3:37699177-37699196 | None:intergenic | 45.0% | |
| GAAAAACCCAAGTCCCACAT+CGG | - | chr2_3:37699428-37699447 | Msa0290440:CDS | 45.0% | |
| ATCTATCCGATGTGGGACTT+GGG | + | chr2_3:37699437-37699456 | None:intergenic | 45.0% | |
| TATCTATCCGATGTGGGACT+TGG | + | chr2_3:37699438-37699457 | None:intergenic | 45.0% | |
| AAGTCCCACATCGGATAGAT+AGG | - | chr2_3:37699437-37699456 | Msa0290440:CDS | 45.0% | |
| GAGTCCTATCTATCCGATGT+GGG | + | chr2_3:37699444-37699463 | None:intergenic | 45.0% | |
| AGAGTCCTATCTATCCGATG+TGG | + | chr2_3:37699445-37699464 | None:intergenic | 45.0% | |
| ! | GTAGAATTTTCCTGCCTCGA+TGG | + | chr2_3:37699598-37699617 | None:intergenic | 45.0% |
| TAAGACTAGTGACCAGTTCC+AGG | - | chr2_3:37699685-37699704 | Msa0290440:intron | 45.0% | |
| TGAATGGGACAATTGGAACC+TGG | + | chr2_3:37699706-37699725 | None:intergenic | 45.0% | |
| TCCCATTCATAGTACCTGAG+TGG | - | chr2_3:37699717-37699736 | Msa0290440:intron | 45.0% | |
| GTACCTGAGTGGTAAAGACT+TGG | - | chr2_3:37699728-37699747 | Msa0290440:intron | 45.0% | |
| TAGTGTCCAACTTAAGGCCA+AGG | - | chr2_3:37699759-37699778 | Msa0290440:intron | 45.0% | |
| TAAAGTGTGTCCGAAGCTTG+AGG | - | chr2_3:37700225-37700244 | Msa0290440:intron | 45.0% | |
| ACTAGCAAAGCCTCAAGCTT+CGG | + | chr2_3:37700238-37700257 | None:intergenic | 45.0% | |
| CATGTCTTCTCGAGATGCTT+TGG | + | chr2_3:37700779-37700798 | None:intergenic | 45.0% | |
| ! | CAAAGCATCTCGAGAAGACA+TGG | - | chr2_3:37700777-37700796 | Msa0290440:intron | 45.0% |
| GAGAAGACATGGAAGCTATG+TGG | - | chr2_3:37700788-37700807 | Msa0290440:intron | 45.0% | |
| AGAAGCGACCATATCTTTCC+CGG | - | chr2_3:37700887-37700906 | Msa0290440:CDS | 45.0% | |
| ATTTCCACCCGGGAAAGATA+TGG | + | chr2_3:37700898-37700917 | None:intergenic | 45.0% | |
| TCATACCTTCATTTCCACCC+GGG | + | chr2_3:37700908-37700927 | None:intergenic | 45.0% | |
| AGGCATGCCAAATGTCATCA+AGG | + | chr2_3:37701207-37701226 | None:intergenic | 45.0% | |
| ! | TCCGTGTAAGAGGTACAACA+AGG | - | chr2_3:37701533-37701552 | Msa0290440:intron | 45.0% |
| ! | GAGACTGTTTAGGAGAGCAT+CGG | + | chr2_3:37701758-37701777 | None:intergenic | 45.0% |
| CAGAGAGTTAGGCTCATCAT+GGG | + | chr2_3:37701929-37701948 | None:intergenic | 45.0% | |
| ACAGAGAGTTAGGCTCATCA+TGG | + | chr2_3:37701930-37701949 | None:intergenic | 45.0% | |
| CAGACAGTACTTTGTGCCAT+TGG | - | chr2_3:37702448-37702467 | Msa0290440:intron | 45.0% | |
| ! | AGTACTTTGTGCCATTGGAG+AGG | - | chr2_3:37702453-37702472 | Msa0290440:intron | 45.0% |
| ATGCGCTTTGTACATGGAGA+TGG | - | chr2_3:37702484-37702503 | Msa0290440:CDS | 45.0% | |
| TGGACCAAGACCTGGAATAA+TGG | - | chr2_3:37702504-37702523 | Msa0290440:CDS | 45.0% | |
| GGACCAAGACCTGGAATAAT+GGG | - | chr2_3:37702505-37702524 | Msa0290440:CDS | 45.0% | |
| GACCAAGACCTGGAATAATG+GGG | - | chr2_3:37702506-37702525 | Msa0290440:CDS | 45.0% | |
| ATCCCCATTATTCCAGGTCT+TGG | + | chr2_3:37702511-37702530 | None:intergenic | 45.0% | |
| !!! | AATTTGTTTTTTTTTTTTTT+TGG | - | chr2_3:37696297-37696316 | Msa0290440:intron | 5.0% |
| AATGTGAGAGGGAGAGATGG+GGG | + | chr2_3:37695924-37695943 | None:intergenic | 50.0% | |
| CAATGTGAGAGGGAGAGATG+GGG | + | chr2_3:37695925-37695944 | None:intergenic | 50.0% | |
| GCAATGTGAGAGGGAGAGAT+GGG | + | chr2_3:37695926-37695945 | None:intergenic | 50.0% | |
| CCCACTAGTGCACAGTGAAT+TGG | + | chr2_3:37696363-37696382 | None:intergenic | 50.0% | |
| TGTATAGACTGACCCGACAC+AGG | - | chr2_3:37696409-37696428 | Msa0290440:intron | 50.0% | |
| TGACCCGACACAGGAATTGT+TGG | - | chr2_3:37696418-37696437 | Msa0290440:intron | 50.0% | |
| ! | CTAGGAGTGTGCTCCTCTTT+AGG | + | chr2_3:37696453-37696472 | None:intergenic | 50.0% |
| ! | CTAAAGAGGAGCACACTCCT+AGG | - | chr2_3:37696451-37696470 | Msa0290440:intron | 50.0% |
| GTGGTATAGACATCGGACCT+AGG | + | chr2_3:37696471-37696490 | None:intergenic | 50.0% | |
| !! | TTAACCCACAAGGGTTAGCC+TGG | + | chr2_3:37696493-37696512 | None:intergenic | 50.0% |
| ! | AGTGCCGAGTGGTTAAAAGC+TGG | - | chr2_3:37696748-37696767 | Msa0290440:intron | 50.0% |
| CGAGTGGTTAAAAGCTGGAG+AGG | - | chr2_3:37696753-37696772 | Msa0290440:intron | 50.0% | |
| CATCTCTCTCGTGATCCTGA+AGG | - | chr2_3:37696793-37696812 | Msa0290440:intron | 50.0% | |
| !! | GTCAAATAAGGCTGGCCTTC+AGG | + | chr2_3:37696811-37696830 | None:intergenic | 50.0% |
| TTGCGGAACTTGAAAGCGAC+AGG | - | chr2_3:37697468-37697487 | Msa0290440:intron | 50.0% | |
| TCAACAAGGAACCACCTGGA+AGG | + | chr2_3:37698379-37698398 | None:intergenic | 50.0% | |
| CAAGCACACATGCACCTCAA+TGG | + | chr2_3:37698673-37698692 | None:intergenic | 50.0% | |
| TCCTCCAGAAAGCAATGGTG+TGG | - | chr2_3:37698961-37698980 | Msa0290440:intron | 50.0% | |
| ACCACACCATTGCTTTCTGG+AGG | + | chr2_3:37698965-37698984 | None:intergenic | 50.0% | |
| GGAACCACACCATTGCTTTC+TGG | + | chr2_3:37698968-37698987 | None:intergenic | 50.0% | |
| AAACACTCCACCTATGGCAG+TGG | - | chr2_3:37699149-37699168 | Msa0290440:intron | 50.0% | |
| GGACAATTGGAACCTGGAAC+TGG | + | chr2_3:37699700-37699719 | None:intergenic | 50.0% | |
| TGTTGCAGGAAACAGTCGGA+TGG | + | chr2_3:37699945-37699964 | None:intergenic | 50.0% | |
| GAAGCGACCATATCTTTCCC+GGG | - | chr2_3:37700888-37700907 | Msa0290440:CDS | 50.0% | |
| TCTTTCCCGGGTGGAAATGA+AGG | - | chr2_3:37700900-37700919 | Msa0290440:CDS | 50.0% | |
| CATGCTAGCAACCTCTCCAA+TGG | + | chr2_3:37702467-37702486 | None:intergenic | 50.0% | |
| GCTAGCATGCGCTTTGTACA+TGG | - | chr2_3:37702478-37702497 | Msa0290440:intron | 50.0% | |
| GGCAATGTGAGAGGGAGAGA+TGG | + | chr2_3:37695927-37695946 | None:intergenic | 55.0% | |
| GGTCCGATGTCTATACCACC+AGG | - | chr2_3:37696472-37696491 | Msa0290440:intron | 55.0% | |
| TACCACCAGGCTAACCCTTG+TGG | - | chr2_3:37696485-37696504 | Msa0290440:intron | 55.0% | |
| ACCACCAGGCTAACCCTTGT+GGG | - | chr2_3:37696486-37696505 | Msa0290440:intron | 55.0% | |
| TGGCGGCCAATTTCAGCTAC+TGG | - | chr2_3:37696671-37696690 | Msa0290440:intron | 55.0% | |
| GGCGGCCAATTTCAGCTACT+GGG | - | chr2_3:37696672-37696691 | Msa0290440:intron | 55.0% | |
| !! | TACCTGAAGTGAGTGCCGAG+TGG | - | chr2_3:37696737-37696756 | Msa0290440:intron | 55.0% |
| AACCACTCGGCACTCACTTC+AGG | + | chr2_3:37696742-37696761 | None:intergenic | 55.0% | |
| GCTCCACTGGATCACGCATT+TGG | - | chr2_3:37699171-37699190 | Msa0290440:intron | 55.0% | |
| GCGGGGTCTAACAGAGAGTT+AGG | + | chr2_3:37701940-37701959 | None:intergenic | 55.0% | |
| CATGGAGATGGACCAAGACC+TGG | - | chr2_3:37702496-37702515 | Msa0290440:CDS | 55.0% | |
| AGAGGGAGAGATGGGGGATG+GGG | + | chr2_3:37695918-37695937 | None:intergenic | 60.0% | |
| GAGAGGGAGAGATGGGGGAT+GGG | + | chr2_3:37695919-37695938 | None:intergenic | 60.0% | |
| TGAGAGGGAGAGATGGGGGA+TGG | + | chr2_3:37695920-37695939 | None:intergenic | 60.0% | |
| !! | ACCCACAAGGGTTAGCCTGG+TGG | + | chr2_3:37696490-37696509 | None:intergenic | 60.0% |
| AGTGGAGCCACTGCCATAGG+TGG | + | chr2_3:37699159-37699178 | None:intergenic | 60.0% | |
| ACCTATGGCAGTGGCTCCAC+TGG | - | chr2_3:37699158-37699177 | Msa0290440:intron | 60.0% | |
| TCCAGTGGAGCCACTGCCAT+AGG | + | chr2_3:37699162-37699181 | None:intergenic | 60.0% | |
| GCGACCATATCTTTCCCGGG+TGG | - | chr2_3:37700891-37700910 | Msa0290440:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 37695880 | 37702558 | 37695880 | ID=Msa0290440;Name=Msa0290440 |
| chr2_3 | mRNA | 37695880 | 37702558 | 37695880 | ID=Msa0290440-mRNA-1;Parent=Msa0290440;Name=Msa0290440-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.55|0.4|0.7|0.88|0.7|10|0|368 |
| chr2_3 | exon | 37702479 | 37702558 | 37702479 | ID=Msa0290440-mRNA-1:exon:12348;Parent=Msa0290440-mRNA-1 |
| chr2_3 | exon | 37701592 | 37701769 | 37701592 | ID=Msa0290440-mRNA-1:exon:12347;Parent=Msa0290440-mRNA-1 |
| chr2_3 | exon | 37701152 | 37701202 | 37701152 | ID=Msa0290440-mRNA-1:exon:12346;Parent=Msa0290440-mRNA-1 |
| chr2_3 | exon | 37700856 | 37700986 | 37700856 | ID=Msa0290440-mRNA-1:exon:12345;Parent=Msa0290440-mRNA-1 |
| chr2_3 | exon | 37700293 | 37700409 | 37700293 | ID=Msa0290440-mRNA-1:exon:12344;Parent=Msa0290440-mRNA-1 |
| chr2_3 | exon | 37700055 | 37700174 | 37700055 | ID=Msa0290440-mRNA-1:exon:12343;Parent=Msa0290440-mRNA-1 |
| chr2_3 | exon | 37699404 | 37699495 | 37699404 | ID=Msa0290440-mRNA-1:exon:12342;Parent=Msa0290440-mRNA-1 |
| chr2_3 | exon | 37697517 | 37697689 | 37697517 | ID=Msa0290440-mRNA-1:exon:12341;Parent=Msa0290440-mRNA-1 |
| chr2_3 | exon | 37696327 | 37696380 | 37696327 | ID=Msa0290440-mRNA-1:exon:12340;Parent=Msa0290440-mRNA-1 |
| chr2_3 | exon | 37695880 | 37695987 | 37695880 | ID=Msa0290440-mRNA-1:exon:12339;Parent=Msa0290440-mRNA-1 |
| chr2_3 | CDS | 37702479 | 37702558 | 37702479 | ID=Msa0290440-mRNA-1:cds;Parent=Msa0290440-mRNA-1 |
| chr2_3 | CDS | 37701592 | 37701769 | 37701592 | ID=Msa0290440-mRNA-1:cds;Parent=Msa0290440-mRNA-1 |
| chr2_3 | CDS | 37701152 | 37701202 | 37701152 | ID=Msa0290440-mRNA-1:cds;Parent=Msa0290440-mRNA-1 |
| chr2_3 | CDS | 37700856 | 37700986 | 37700856 | ID=Msa0290440-mRNA-1:cds;Parent=Msa0290440-mRNA-1 |
| chr2_3 | CDS | 37700293 | 37700409 | 37700293 | ID=Msa0290440-mRNA-1:cds;Parent=Msa0290440-mRNA-1 |
| chr2_3 | CDS | 37700055 | 37700174 | 37700055 | ID=Msa0290440-mRNA-1:cds;Parent=Msa0290440-mRNA-1 |
| chr2_3 | CDS | 37699404 | 37699495 | 37699404 | ID=Msa0290440-mRNA-1:cds;Parent=Msa0290440-mRNA-1 |
| chr2_3 | CDS | 37697517 | 37697689 | 37697517 | ID=Msa0290440-mRNA-1:cds;Parent=Msa0290440-mRNA-1 |
| chr2_3 | CDS | 37696327 | 37696380 | 37696327 | ID=Msa0290440-mRNA-1:cds;Parent=Msa0290440-mRNA-1 |
| chr2_3 | CDS | 37695880 | 37695987 | 37695880 | ID=Msa0290440-mRNA-1:cds;Parent=Msa0290440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
